Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117760 | RHN79225.1 | 75.238 | 315 | 46 | 4 | 1 | 312 | 1 | 286 | 1.91e-138 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117760 | A0A396JSM8 | 75.238 | 315 | 46 | 4 | 1 | 312 | 1 | 286 | 9.12e-139 | 403 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117760 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117760 | MtrunA17_Chr1g0174871 | 75.238 | 315 | 46 | 4 | 1 | 312 | 1 | 286 | 1.76e-142 | 403 |
| Msa0117760 | MtrunA17_Chr1g0174861 | 53.030 | 264 | 87 | 10 | 17 | 275 | 16 | 247 | 1.21e-69 | 216 |
| Msa0117760 | MtrunA17_Chr1g0169521 | 31.902 | 326 | 134 | 12 | 26 | 310 | 37 | 315 | 3.64e-30 | 116 |
| Msa0117760 | MtrunA17_Chr1g0169561 | 32.110 | 327 | 130 | 13 | 26 | 309 | 37 | 314 | 3.30e-29 | 113 |
| Msa0117760 | MtrunA17_Chr1g0172861 | 31.210 | 314 | 160 | 14 | 5 | 308 | 11 | 278 | 1.33e-22 | 95.1 |
| Msa0117760 | MtrunA17_Chr1g0172961 | 32.127 | 221 | 124 | 9 | 27 | 229 | 30 | 242 | 2.07e-18 | 83.2 |
| Msa0117760 | MtrunA17_Chr7g0214511 | 31.183 | 279 | 122 | 12 | 39 | 310 | 71 | 286 | 4.34e-18 | 82.8 |
| Msa0117760 | MtrunA17_Chr4g0037041 | 37.143 | 140 | 69 | 4 | 5 | 136 | 11 | 139 | 3.01e-16 | 75.9 |
| Msa0117760 | MtrunA17_Chr1g0174001 | 30.901 | 233 | 104 | 9 | 96 | 310 | 1 | 194 | 6.16e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTCCAGCTCCGTTTCT+TGG | 0.269877 | 1_3:+39394860 | None:intergenic |
| GAAGAAAGTTGTTGCCTCTA+TGG | 0.295075 | 1_3:+39395108 | None:intergenic |
| AGAGGCAACAACTTTCTTCT+AGG | 0.323367 | 1_3:-39395104 | Msa0117760:CDS |
| TGAGGAACCAACTCATGAAT+TGG | 0.350528 | 1_3:-39394418 | Msa0117760:CDS |
| ACTCTCATCACAAACCAAAA+AGG | 0.357704 | 1_3:-39395223 | Msa0117760:CDS |
| GTTCTCTTCATTATCATCAT+TGG | 0.362989 | 1_3:+39394545 | None:intergenic |
| TCTTCGAAGTCGAACCATAT+TGG | 0.367921 | 1_3:+39394961 | None:intergenic |
| ATGAAATCGCACAGCCAATA+TGG | 0.368027 | 1_3:-39394975 | Msa0117760:CDS |
| TCATCTTCACCAGTGTTGTT+TGG | 0.374435 | 1_3:+39394450 | None:intergenic |
| TCATCTTCACCAGTGTTGTT+TGG | 0.380635 | 1_3:+39394486 | None:intergenic |
| ATCATTGGAAGCAGATTGAT+TGG | 0.381296 | 1_3:+39394560 | None:intergenic |
| GAGGAACCAACTCATGAATT+GGG | 0.382420 | 1_3:-39394417 | Msa0117760:CDS |
| AAATACTTTCTCAAATCAAT+TGG | 0.400225 | 1_3:+39394903 | None:intergenic |
| TGATTCCCAACAAGGTTGTT+AGG | 0.405927 | 1_3:+39394780 | None:intergenic |
| TGCAGAAATGTGGGTGGGAA+TGG | 0.425504 | 1_3:-39394732 | Msa0117760:CDS |
| CGATCACCTAACAACCTTGT+TGG | 0.429642 | 1_3:-39394786 | Msa0117760:CDS |
| TGCCTCTATGGAATGCTTTG+TGG | 0.438332 | 1_3:+39395120 | None:intergenic |
| TCATGTTGCTGAAGCAATGC+TGG | 0.444801 | 1_3:-39394820 | Msa0117760:CDS |
| GATCACCTAACAACCTTGTT+GGG | 0.460149 | 1_3:-39394785 | Msa0117760:CDS |
| TTCTTGGTCACATAACTCAT+TGG | 0.463818 | 1_3:+39394876 | None:intergenic |
| CAATTGGTGGAAATTGATCT+AGG | 0.480999 | 1_3:+39394919 | None:intergenic |
| TACTTTCTCAAATCAATTGG+TGG | 0.486384 | 1_3:+39394906 | None:intergenic |
| GCAGAAATGTGGGTGGGAAT+GGG | 0.488317 | 1_3:-39394731 | Msa0117760:CDS |
| GAATGCTTTGTGGCCGCCGA+GGG | 0.493083 | 1_3:+39395130 | None:intergenic |
| TTTAACCCCAATTCATGAGT+TGG | 0.505846 | 1_3:+39394411 | None:intergenic |
| GGAATCACCGTGTCACGAAA+AGG | 0.512728 | 1_3:-39394764 | Msa0117760:CDS |
| GATCAAACTTTGCAGAAATG+TGG | 0.524856 | 1_3:-39394742 | Msa0117760:CDS |
| ATATGGTTCGACTTCGAAGA+AGG | 0.528018 | 1_3:-39394958 | Msa0117760:CDS |
| TTGGTCACATAACTCATTGG+TGG | 0.531076 | 1_3:+39394879 | None:intergenic |
| TTCACCACTGGTAACGCCCT+CGG | 0.552306 | 1_3:-39395146 | Msa0117760:CDS |
| ATCAAACTTTGCAGAAATGT+GGG | 0.554714 | 1_3:-39394741 | Msa0117760:CDS |
| TGAGTTATGTGACCAAGAAA+CGG | 0.560971 | 1_3:-39394872 | Msa0117760:CDS |
| AAAAGGAGTGTTGTTGATCA+TGG | 0.562216 | 1_3:-39395206 | Msa0117760:CDS |
| AAAAGAACAGCTTGGTGGTG+AGG | 0.570897 | 1_3:-39394626 | Msa0117760:CDS |
| TCATCTGTCAATGCTCTCAA+CGG | 0.575258 | 1_3:-39395002 | Msa0117760:CDS |
| TCATCTGCATCATCATCCAC+TGG | 0.575486 | 1_3:+39394357 | None:intergenic |
| AAACAATGAAAAGAACAGCT+TGG | 0.582230 | 1_3:-39394634 | Msa0117760:CDS |
| CAATGAAAAGAACAGCTTGG+TGG | 0.584869 | 1_3:-39394631 | Msa0117760:CDS |
| AACTTTGCAGAAATGTGGGT+GGG | 0.585412 | 1_3:-39394737 | Msa0117760:CDS |
| GGAATGCTTTGTGGCCGCCG+AGG | 0.588007 | 1_3:+39395129 | None:intergenic |
| GCAACGAACACATGAATGGT+TGG | 0.590907 | 1_3:+39395037 | None:intergenic |
| TGAAGATGATGAAGCAAATG+AGG | 0.593094 | 1_3:-39394436 | Msa0117760:CDS |
| CGATTTGAATGAGCTGCCAG+TGG | 0.597243 | 1_3:-39394373 | Msa0117760:CDS |
| ATGTGACCAAGAAACGGAGC+TGG | 0.597485 | 1_3:-39394866 | Msa0117760:CDS |
| AAGATGAAGATCAGAGAGCA+AGG | 0.598147 | 1_3:-39394708 | Msa0117760:CDS |
| TATGGTTCGACTTCGAAGAA+GGG | 0.600043 | 1_3:-39394957 | Msa0117760:CDS |
| GCCGCCGAGGGCGTTACCAG+TGG | 0.610498 | 1_3:+39395142 | None:intergenic |
| TGTGACAGAGAATTCACCAC+TGG | 0.614086 | 1_3:-39395158 | Msa0117760:CDS |
| TGACACGGTGATTCCCAACA+AGG | 0.616814 | 1_3:+39394772 | None:intergenic |
| AAACTTTGCAGAAATGTGGG+TGG | 0.628923 | 1_3:-39394738 | Msa0117760:CDS |
| AGGAACCAACTCATGAATTG+GGG | 0.629510 | 1_3:-39394416 | Msa0117760:CDS |
| GGCCACAAAGCATTCCATAG+AGG | 0.645608 | 1_3:-39395122 | Msa0117760:CDS |
| GACGAGGAACCAAACAACAC+TGG | 0.652317 | 1_3:-39394495 | Msa0117760:CDS |
| TGCTGCAACGAACACATGAA+TGG | 0.655011 | 1_3:+39395033 | None:intergenic |
| AATGAAGAGAACAACAACAC+TGG | 0.663304 | 1_3:-39394534 | Msa0117760:CDS |
| GTGAGGTTAAAGATTCCGAA+TGG | 0.667579 | 1_3:-39394609 | Msa0117760:CDS |
| GATGAGGAACCAAACAACAC+TGG | 0.675447 | 1_3:-39394459 | Msa0117760:CDS |
| ACCACTGGTAACGCCCTCGG+CGG | 0.680554 | 1_3:-39395143 | Msa0117760:CDS |
| TGGTGAAGATGATGTAGATG+AGG | 0.685852 | 1_3:-39394475 | Msa0117760:CDS |
| TGAAGATGATGAAACAGACG+AGG | 0.739030 | 1_3:-39394511 | Msa0117760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACTTTCTCAAATCAAT+TGG | + | chr1_3:39394704-39394723 | None:intergenic | 20.0% |
| !! | AAATACTTTCTCAAATCAAT+TGG | + | chr1_3:39394704-39394723 | None:intergenic | 20.0% |
| AACAAAGAAAAACATGCTGA+TGG | - | chr1_3:39394530-39394549 | Msa0117760:CDS | 30.0% | |
| TACTTTCTCAAATCAATTGG+TGG | + | chr1_3:39394701-39394720 | None:intergenic | 30.0% | |
| ATCAAACTTTGCAGAAATGT+GGG | - | chr1_3:39394863-39394882 | Msa0117760:CDS | 30.0% | |
| AAACAATGAAAAGAACAGCT+TGG | - | chr1_3:39394970-39394989 | Msa0117760:CDS | 30.0% | |
| ! | CTTCTGATTTTTGAATGACA+AGG | + | chr1_3:39395021-39395040 | None:intergenic | 30.0% |
| GTTCTCTTCATTATCATCAT+TGG | + | chr1_3:39395062-39395081 | None:intergenic | 30.0% | |
| AACAAAGAAAAACATGCTGA+TGG | - | chr1_3:39394530-39394549 | Msa0117760:CDS | 30.0% | |
| TACTTTCTCAAATCAATTGG+TGG | + | chr1_3:39394701-39394720 | None:intergenic | 30.0% | |
| ATCAAACTTTGCAGAAATGT+GGG | - | chr1_3:39394863-39394882 | Msa0117760:CDS | 30.0% | |
| AAACAATGAAAAGAACAGCT+TGG | - | chr1_3:39394970-39394989 | Msa0117760:CDS | 30.0% | |
| ! | CTTCTGATTTTTGAATGACA+AGG | + | chr1_3:39395021-39395040 | None:intergenic | 30.0% |
| GTTCTCTTCATTATCATCAT+TGG | + | chr1_3:39395062-39395081 | None:intergenic | 30.0% | |
| ACTCTCATCACAAACCAAAA+AGG | - | chr1_3:39394381-39394400 | Msa0117760:CDS | 35.0% | |
| ! | TGATCAACAACACTCCTTTT+TGG | + | chr1_3:39394398-39394417 | None:intergenic | 35.0% |
| !! | AAAAGGAGTGTTGTTGATCA+TGG | - | chr1_3:39394398-39394417 | Msa0117760:CDS | 35.0% |
| CAATTGGTGGAAATTGATCT+AGG | + | chr1_3:39394688-39394707 | None:intergenic | 35.0% | |
| TTCTTGGTCACATAACTCAT+TGG | + | chr1_3:39394731-39394750 | None:intergenic | 35.0% | |
| TGAGTTATGTGACCAAGAAA+CGG | - | chr1_3:39394732-39394751 | Msa0117760:CDS | 35.0% | |
| GATCAAACTTTGCAGAAATG+TGG | - | chr1_3:39394862-39394881 | Msa0117760:CDS | 35.0% | |
| ! | TTTTGAATGACAAGGCCATT+CGG | + | chr1_3:39395013-39395032 | None:intergenic | 35.0% |
| ATCATTGGAAGCAGATTGAT+TGG | + | chr1_3:39395047-39395066 | None:intergenic | 35.0% | |
| AATGAAGAGAACAACAACAC+TGG | - | chr1_3:39395070-39395089 | Msa0117760:CDS | 35.0% | |
| TGAAGATGATGAAGCAAATG+AGG | - | chr1_3:39395168-39395187 | Msa0117760:CDS | 35.0% | |
| TTTAACCCCAATTCATGAGT+TGG | + | chr1_3:39395196-39395215 | None:intergenic | 35.0% | |
| ACTCTCATCACAAACCAAAA+AGG | - | chr1_3:39394381-39394400 | Msa0117760:CDS | 35.0% | |
| ! | TGATCAACAACACTCCTTTT+TGG | + | chr1_3:39394398-39394417 | None:intergenic | 35.0% |
| !! | AAAAGGAGTGTTGTTGATCA+TGG | - | chr1_3:39394398-39394417 | Msa0117760:CDS | 35.0% |
| CAATTGGTGGAAATTGATCT+AGG | + | chr1_3:39394688-39394707 | None:intergenic | 35.0% | |
| TTCTTGGTCACATAACTCAT+TGG | + | chr1_3:39394731-39394750 | None:intergenic | 35.0% | |
| TGAGTTATGTGACCAAGAAA+CGG | - | chr1_3:39394732-39394751 | Msa0117760:CDS | 35.0% | |
| GATCAAACTTTGCAGAAATG+TGG | - | chr1_3:39394862-39394881 | Msa0117760:CDS | 35.0% | |
| ! | TTTTGAATGACAAGGCCATT+CGG | + | chr1_3:39395013-39395032 | None:intergenic | 35.0% |
| ATCATTGGAAGCAGATTGAT+TGG | + | chr1_3:39395047-39395066 | None:intergenic | 35.0% | |
| AATGAAGAGAACAACAACAC+TGG | - | chr1_3:39395070-39395089 | Msa0117760:CDS | 35.0% | |
| TGAAGATGATGAAGCAAATG+AGG | - | chr1_3:39395168-39395187 | Msa0117760:CDS | 35.0% | |
| TTTAACCCCAATTCATGAGT+TGG | + | chr1_3:39395196-39395215 | None:intergenic | 35.0% | |
| GAAGAAAGTTGTTGCCTCTA+TGG | + | chr1_3:39394499-39394518 | None:intergenic | 40.0% | |
| AGAGGCAACAACTTTCTTCT+AGG | - | chr1_3:39394500-39394519 | Msa0117760:CDS | 40.0% | |
| TCATCTGTCAATGCTCTCAA+CGG | - | chr1_3:39394602-39394621 | Msa0117760:CDS | 40.0% | |
| ATGAAATCGCACAGCCAATA+TGG | - | chr1_3:39394629-39394648 | Msa0117760:CDS | 40.0% | |
| TCTTCGAAGTCGAACCATAT+TGG | + | chr1_3:39394646-39394665 | None:intergenic | 40.0% | |
| ATATGGTTCGACTTCGAAGA+AGG | - | chr1_3:39394646-39394665 | Msa0117760:CDS | 40.0% | |
| TATGGTTCGACTTCGAAGAA+GGG | - | chr1_3:39394647-39394666 | Msa0117760:CDS | 40.0% | |
| TTGGTCACATAACTCATTGG+TGG | + | chr1_3:39394728-39394747 | None:intergenic | 40.0% | |
| ATAATTCCAGCTCCGTTTCT+TGG | + | chr1_3:39394747-39394766 | None:intergenic | 40.0% | |
| GATCACCTAACAACCTTGTT+GGG | - | chr1_3:39394819-39394838 | Msa0117760:CDS | 40.0% | |
| TGATTCCCAACAAGGTTGTT+AGG | + | chr1_3:39394827-39394846 | None:intergenic | 40.0% | |
| ! | GTTTGATCCTTTTCGTGACA+CGG | + | chr1_3:39394850-39394869 | None:intergenic | 40.0% |
| AAACTTTGCAGAAATGTGGG+TGG | - | chr1_3:39394866-39394885 | Msa0117760:CDS | 40.0% | |
| AACTTTGCAGAAATGTGGGT+GGG | - | chr1_3:39394867-39394886 | Msa0117760:CDS | 40.0% | |
| AAGATGAAGATCAGAGAGCA+AGG | - | chr1_3:39394896-39394915 | Msa0117760:CDS | 40.0% | |
| CAATGAAAAGAACAGCTTGG+TGG | - | chr1_3:39394973-39394992 | Msa0117760:CDS | 40.0% | |
| GTGAGGTTAAAGATTCCGAA+TGG | - | chr1_3:39394995-39395014 | Msa0117760:CDS | 40.0% | |
| TGAAGATGATGAAACAGACG+AGG | - | chr1_3:39395093-39395112 | Msa0117760:CDS | 40.0% | |
| ! | TCATCTTCACCAGTGTTGTT+TGG | + | chr1_3:39395082-39395101 | None:intergenic | 40.0% |
| TGGTGAAGATGATGTAGATG+AGG | - | chr1_3:39395129-39395148 | Msa0117760:CDS | 40.0% | |
| ! | TCATCTTCACCAGTGTTGTT+TGG | + | chr1_3:39395082-39395101 | None:intergenic | 40.0% |
| TGAGGAACCAACTCATGAAT+TGG | - | chr1_3:39395186-39395205 | Msa0117760:CDS | 40.0% | |
| GAGGAACCAACTCATGAATT+GGG | - | chr1_3:39395187-39395206 | Msa0117760:CDS | 40.0% | |
| AGGAACCAACTCATGAATTG+GGG | - | chr1_3:39395188-39395207 | Msa0117760:CDS | 40.0% | |
| GAAGAAAGTTGTTGCCTCTA+TGG | + | chr1_3:39394499-39394518 | None:intergenic | 40.0% | |
| AGAGGCAACAACTTTCTTCT+AGG | - | chr1_3:39394500-39394519 | Msa0117760:CDS | 40.0% | |
| TCATCTGTCAATGCTCTCAA+CGG | - | chr1_3:39394602-39394621 | Msa0117760:CDS | 40.0% | |
| ATGAAATCGCACAGCCAATA+TGG | - | chr1_3:39394629-39394648 | Msa0117760:CDS | 40.0% | |
| TCTTCGAAGTCGAACCATAT+TGG | + | chr1_3:39394646-39394665 | None:intergenic | 40.0% | |
| ATATGGTTCGACTTCGAAGA+AGG | - | chr1_3:39394646-39394665 | Msa0117760:CDS | 40.0% | |
| TATGGTTCGACTTCGAAGAA+GGG | - | chr1_3:39394647-39394666 | Msa0117760:CDS | 40.0% | |
| TTGGTCACATAACTCATTGG+TGG | + | chr1_3:39394728-39394747 | None:intergenic | 40.0% | |
| ATAATTCCAGCTCCGTTTCT+TGG | + | chr1_3:39394747-39394766 | None:intergenic | 40.0% | |
| GATCACCTAACAACCTTGTT+GGG | - | chr1_3:39394819-39394838 | Msa0117760:CDS | 40.0% | |
| TGATTCCCAACAAGGTTGTT+AGG | + | chr1_3:39394827-39394846 | None:intergenic | 40.0% | |
| ! | GTTTGATCCTTTTCGTGACA+CGG | + | chr1_3:39394850-39394869 | None:intergenic | 40.0% |
| AAACTTTGCAGAAATGTGGG+TGG | - | chr1_3:39394866-39394885 | Msa0117760:CDS | 40.0% | |
| AACTTTGCAGAAATGTGGGT+GGG | - | chr1_3:39394867-39394886 | Msa0117760:CDS | 40.0% | |
| AAGATGAAGATCAGAGAGCA+AGG | - | chr1_3:39394896-39394915 | Msa0117760:CDS | 40.0% | |
| CAATGAAAAGAACAGCTTGG+TGG | - | chr1_3:39394973-39394992 | Msa0117760:CDS | 40.0% | |
| GTGAGGTTAAAGATTCCGAA+TGG | - | chr1_3:39394995-39395014 | Msa0117760:CDS | 40.0% | |
| TGAAGATGATGAAACAGACG+AGG | - | chr1_3:39395093-39395112 | Msa0117760:CDS | 40.0% | |
| ! | TCATCTTCACCAGTGTTGTT+TGG | + | chr1_3:39395082-39395101 | None:intergenic | 40.0% |
| TGGTGAAGATGATGTAGATG+AGG | - | chr1_3:39395129-39395148 | Msa0117760:CDS | 40.0% | |
| ! | TCATCTTCACCAGTGTTGTT+TGG | + | chr1_3:39395082-39395101 | None:intergenic | 40.0% |
| TGAGGAACCAACTCATGAAT+TGG | - | chr1_3:39395186-39395205 | Msa0117760:CDS | 40.0% | |
| GAGGAACCAACTCATGAATT+GGG | - | chr1_3:39395187-39395206 | Msa0117760:CDS | 40.0% | |
| AGGAACCAACTCATGAATTG+GGG | - | chr1_3:39395188-39395207 | Msa0117760:CDS | 40.0% | |
| TGTGACAGAGAATTCACCAC+TGG | - | chr1_3:39394446-39394465 | Msa0117760:CDS | 45.0% | |
| TGCCTCTATGGAATGCTTTG+TGG | + | chr1_3:39394487-39394506 | None:intergenic | 45.0% | |
| GCAACGAACACATGAATGGT+TGG | + | chr1_3:39394570-39394589 | None:intergenic | 45.0% | |
| TGCTGCAACGAACACATGAA+TGG | + | chr1_3:39394574-39394593 | None:intergenic | 45.0% | |
| TCATGTTGCTGAAGCAATGC+TGG | - | chr1_3:39394784-39394803 | Msa0117760:CDS | 45.0% | |
| CGATCACCTAACAACCTTGT+TGG | - | chr1_3:39394818-39394837 | Msa0117760:CDS | 45.0% | |
| !! | AAAAGAACAGCTTGGTGGTG+AGG | - | chr1_3:39394978-39394997 | Msa0117760:CDS | 45.0% |
| GATGAGGAACCAAACAACAC+TGG | - | chr1_3:39395145-39395164 | Msa0117760:CDS | 45.0% | |
| TCATCTGCATCATCATCCAC+TGG | + | chr1_3:39395250-39395269 | None:intergenic | 45.0% | |
| TGTGACAGAGAATTCACCAC+TGG | - | chr1_3:39394446-39394465 | Msa0117760:CDS | 45.0% | |
| TGCCTCTATGGAATGCTTTG+TGG | + | chr1_3:39394487-39394506 | None:intergenic | 45.0% | |
| GCAACGAACACATGAATGGT+TGG | + | chr1_3:39394570-39394589 | None:intergenic | 45.0% | |
| TGCTGCAACGAACACATGAA+TGG | + | chr1_3:39394574-39394593 | None:intergenic | 45.0% | |
| TCATGTTGCTGAAGCAATGC+TGG | - | chr1_3:39394784-39394803 | Msa0117760:CDS | 45.0% | |
| CGATCACCTAACAACCTTGT+TGG | - | chr1_3:39394818-39394837 | Msa0117760:CDS | 45.0% | |
| !! | AAAAGAACAGCTTGGTGGTG+AGG | - | chr1_3:39394978-39394997 | Msa0117760:CDS | 45.0% |
| GATGAGGAACCAAACAACAC+TGG | - | chr1_3:39395145-39395164 | Msa0117760:CDS | 45.0% | |
| TCATCTGCATCATCATCCAC+TGG | + | chr1_3:39395250-39395269 | None:intergenic | 45.0% | |
| ! | GGCCACAAAGCATTCCATAG+AGG | - | chr1_3:39394482-39394501 | Msa0117760:CDS | 50.0% |
| ATGTGACCAAGAAACGGAGC+TGG | - | chr1_3:39394738-39394757 | Msa0117760:CDS | 50.0% | |
| TGACACGGTGATTCCCAACA+AGG | + | chr1_3:39394835-39394854 | None:intergenic | 50.0% | |
| GGAATCACCGTGTCACGAAA+AGG | - | chr1_3:39394840-39394859 | Msa0117760:CDS | 50.0% | |
| TGCAGAAATGTGGGTGGGAA+TGG | - | chr1_3:39394872-39394891 | Msa0117760:CDS | 50.0% | |
| GCAGAAATGTGGGTGGGAAT+GGG | - | chr1_3:39394873-39394892 | Msa0117760:CDS | 50.0% | |
| GACGAGGAACCAAACAACAC+TGG | - | chr1_3:39395109-39395128 | Msa0117760:CDS | 50.0% | |
| CGATTTGAATGAGCTGCCAG+TGG | - | chr1_3:39395231-39395250 | Msa0117760:CDS | 50.0% | |
| ! | GGCCACAAAGCATTCCATAG+AGG | - | chr1_3:39394482-39394501 | Msa0117760:CDS | 50.0% |
| ATGTGACCAAGAAACGGAGC+TGG | - | chr1_3:39394738-39394757 | Msa0117760:CDS | 50.0% | |
| TGACACGGTGATTCCCAACA+AGG | + | chr1_3:39394835-39394854 | None:intergenic | 50.0% | |
| GGAATCACCGTGTCACGAAA+AGG | - | chr1_3:39394840-39394859 | Msa0117760:CDS | 50.0% | |
| TGCAGAAATGTGGGTGGGAA+TGG | - | chr1_3:39394872-39394891 | Msa0117760:CDS | 50.0% | |
| GCAGAAATGTGGGTGGGAAT+GGG | - | chr1_3:39394873-39394892 | Msa0117760:CDS | 50.0% | |
| GACGAGGAACCAAACAACAC+TGG | - | chr1_3:39395109-39395128 | Msa0117760:CDS | 50.0% | |
| CGATTTGAATGAGCTGCCAG+TGG | - | chr1_3:39395231-39395250 | Msa0117760:CDS | 50.0% | |
| ! | TTCACCACTGGTAACGCCCT+CGG | - | chr1_3:39394458-39394477 | Msa0117760:CDS | 55.0% |
| ! | TTCACCACTGGTAACGCCCT+CGG | - | chr1_3:39394458-39394477 | Msa0117760:CDS | 55.0% |
| GAATGCTTTGTGGCCGCCGA+GGG | + | chr1_3:39394477-39394496 | None:intergenic | 60.0% | |
| GAATGCTTTGTGGCCGCCGA+GGG | + | chr1_3:39394477-39394496 | None:intergenic | 60.0% | |
| ! | ACCACTGGTAACGCCCTCGG+CGG | - | chr1_3:39394461-39394480 | Msa0117760:CDS | 65.0% |
| GGAATGCTTTGTGGCCGCCG+AGG | + | chr1_3:39394478-39394497 | None:intergenic | 65.0% | |
| ! | ACCACTGGTAACGCCCTCGG+CGG | - | chr1_3:39394461-39394480 | Msa0117760:CDS | 65.0% |
| GGAATGCTTTGTGGCCGCCG+AGG | + | chr1_3:39394478-39394497 | None:intergenic | 65.0% | |
| !! | GCCGCCGAGGGCGTTACCAG+TGG | + | chr1_3:39394465-39394484 | None:intergenic | 75.0% |
| !! | GCCGCCGAGGGCGTTACCAG+TGG | + | chr1_3:39394465-39394484 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 39394344 | 39395282 | 39394344 | ID=Msa0117760;Name=Msa0117760 |
| chr1_3 | mRNA | 39394344 | 39395282 | 39394344 | ID=Msa0117760-mRNA-1;Parent=Msa0117760;Name=Msa0117760-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|312 |
| chr1_3 | exon | 39394344 | 39395282 | 39394344 | ID=Msa0117760-mRNA-1:exon:12189;Parent=Msa0117760-mRNA-1 |
| chr1_3 | CDS | 39394344 | 39395282 | 39394344 | ID=Msa0117760-mRNA-1:cds;Parent=Msa0117760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
