AlfalfaGEDB | Msa0117780

M. sativa cultivar zhongmu-4 / Msa0117780

KEGG: -
GO: -
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117780	A0A072VJQ5	86.707	331	34	2	1	329	1	323	0.0	566

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TFs/TRs:

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Gene ID	Type	Classification
Msa0117780	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117780	MtrunA17_Chr1g0174911	86.707	331	34	2	1	329	1	323	0.0	566
Msa0117780	MtrunA17_Chr1g0168571	57.593	349	102	11	1	328	1	324	5.08e-116	338
Msa0117780	MtrunA17_Chr7g0274971	60.976	205	53	6	1	183	1	200	4.35e-76	233
Msa0117780	MtrunA17_Chr7g0214071	32.143	168	91	9	11	170	19	171	4.83e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 59 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATCGTATTCAAGAA+TGG	0.519788	1_3:+39436788	None:intergenic
AAAGAATCCTTGGGATATTT+GGG	0.338135	1_3:-39436757	Msa0117780:CDS
AAATATCCCAAGGATTCTTT+AGG	0.262491	1_3:+39436760	None:intergenic
AAATGATGGTGAAAGCATTG+TGG	0.661701	1_3:-39435272	Msa0117780:CDS
AACTCTTCATGAAACTTATT+GGG	0.303213	1_3:+39435142	None:intergenic
AACTCTTCCCAAATATCCCA+AGG	0.585203	1_3:+39436750	None:intergenic
AATAGTGGCACTTACCATGA+TGG	0.645072	1_3:-39436528	Msa0117780:CDS
AATATCCCAAGGATTCTTTA+GGG	0.371252	1_3:+39436761	None:intergenic
AATCAAGTAACTTACAGATA+TGG	0.426262	1_3:+39436267	None:intergenic
AGAAAGAATATTCATGCACA+AGG	0.627598	1_3:-39436331	Msa0117780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCAATTCTTCTTCAAGTA+AGG	-	chr1_3:39435119-39435138	Msa0117780:CDS	30.0%
TCAAGAATGGTGATATAGTT+GGG	+	chr1_3:39435216-39435235	None:intergenic	30.0%
TTCAAGAATGGTGATATAGT+TGG	+	chr1_3:39435217-39435236	None:intergenic	30.0%
AATATCCCAAGGATTCTTTA+GGG	+	chr1_3:39435256-39435275	None:intergenic	30.0%
AAATATCCCAAGGATTCTTT+AGG	+	chr1_3:39435257-39435276	None:intergenic	30.0%
TAAAGAATCCTTGGGATATT+TGG	-	chr1_3:39435256-39435275	Msa0117780:CDS	30.0%
AAAGAATCCTTGGGATATTT+GGG	-	chr1_3:39435257-39435276	Msa0117780:CDS	30.0%
TCAAAAGTAGTTCGTTCTAT+TGG	-	chr1_3:39435366-39435385	Msa0117780:intron	30.0%
TTCTTATCAAAGATTTGTCG+AGG	+	chr1_3:39435536-39435555	None:intergenic	30.0%
TCTGCATAGAACATAATTGT+TGG	+	chr1_3:39435660-39435679	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	39435114	39436922	39435114	ID=Msa0117780;Name=Msa0117780
chr1_3	mRNA	39435114	39436922	39435114	ID=Msa0117780-mRNA-1;Parent=Msa0117780;Name=Msa0117780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|4\|0\|329
chr1_3	exon	39436473	39436922	39436473	ID=Msa0117780-mRNA-1:exon:12188;Parent=Msa0117780-mRNA-1
chr1_3	exon	39436282	39436380	39436282	ID=Msa0117780-mRNA-1:exon:12187;Parent=Msa0117780-mRNA-1
chr1_3	exon	39435983	39436165	39435983	ID=Msa0117780-mRNA-1:exon:12186;Parent=Msa0117780-mRNA-1
chr1_3	exon	39435114	39435371	39435114	ID=Msa0117780-mRNA-1:exon:12185;Parent=Msa0117780-mRNA-1
chr1_3	CDS	39436473	39436922	39436473	ID=Msa0117780-mRNA-1:cds;Parent=Msa0117780-mRNA-1
chr1_3	CDS	39436282	39436380	39436282	ID=Msa0117780-mRNA-1:cds;Parent=Msa0117780-mRNA-1
chr1_3	CDS	39435983	39436165	39435983	ID=Msa0117780-mRNA-1:cds;Parent=Msa0117780-mRNA-1
chr1_3	CDS	39435114	39435371	39435114	ID=Msa0117780-mRNA-1:cds;Parent=Msa0117780-mRNA-1

Gene Sequence

>Msa0117780

ATGGCTCTCAATTCTTCTTCAAGTAAGGATTTCAAATTCACACTCAGAGATGATGAACTTCTACGTTTCCTCTACAACAAAATCCATAACAAATCTCTGCCCAACTATATCACCATTCTTGAATACGATTTGTTTGGTACCCTAAAGAATCCTTGGGATATTTGGGAAGAGTTTGGAGCTTCTCGCTCATATTGTGAAAAAGACCTATACTTCTTCACTACCTTAACCCTAGAGAAGAAATCTACCACTAGCTCAAAAGTAGTTCGTTCTATTGGAATTGGTGCATGGGAAGGTGAAGAAGACACTGGAAAAATTATAGTTGCAAAAAACAAGAACCAACTCCTTGGTGTGAAAAAATGTTTTCGATTTGAGAATAGTGGCACTTACCATGATGGTGCATGGATCTTGCATGAATATAGCCTCGACAAATCTTTGATAAGAAATCCTTTGGCCAACAATTATGTTCTATGCAGATTTAGAAAGAATATTCATGCACAAGGTAAAGAAAGAAAGACCATTGTTCCTGGACGTGCAGAAACCACCATATCTGGAAATAAAGATTCGTTGACAAAATATATAATTTATAAAGAACCAAGAAACGAATCAAATGGTGGACACAATGGCACAAATATGGTTAATACAGAGTCTCATTATAAGAAAGAAGAAAAAGATGTTAGAAATATTTGGCCAAGAGAGACAACCATTCTTGGACTCGAAGCAGCCAACAAATTTGAGAATATCGACCAAAATCAAATAGTTCAACCTGACAATGAAGATGATGATGATGGTGAATGCATTGTGGACAAAGAAAATGATGGTGAAAGCATTGTGGACGAAGAAGATGATGATGCTGGTATGTCTTGGCCTGAGATTTTTGCAAAGGAGCTGATAGAGATTAATGAAGGATGCTTGTTAGAAGAGGAAGAGGTTCAAATGATTCCCAATAAGTTTCATGAAGAGTTATTATTGGATAATACTAACATAAAATAA

Protein sequence

>Msa0117780

MALNSSSSKDFKFTLRDDELLRFLYNKIHNKSLPNYITILEYDLFGTLKNPWDIWEEFGASRSYCEKDLYFFTTLTLEKKSTTSSKVVRSIGIGAWEGEEDTGKIIVAKNKNQLLGVKKCFRFENSGTYHDGAWILHEYSLDKSLIRNPLANNYVLCRFRKNIHAQGKERKTIVPGRAETTISGNKDSLTKYIIYKEPRNESNGGHNGTNMVNTESHYKKEEKDVRNIWPRETTILGLEAANKFENIDQNQIVQPDNEDDDDGECIVDKENDGESIVDEEDDDAGMSWPEIFAKELIEINEGCLLEEEEVQMIPNKFHEELLLDNTNIK*