Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117810 | QOV03071.1 | 88.442 | 398 | 0 | 1 | 1 | 398 | 1 | 352 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117810 | sp|Q9M2Q6|SPL15_ARATH | 37.963 | 324 | 97 | 12 | 23 | 331 | 27 | 261 | 8.72e-43 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117810 | A0A7U3NI63 | 88.442 | 398 | 0 | 1 | 1 | 398 | 1 | 352 | 0.0 | 704 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117810 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117810 | MtrunA17_Chr1g0175021 | 91.739 | 230 | 19 | 0 | 169 | 398 | 8 | 237 | 2.19e-154 | 435 |
| Msa0117810 | MtrunA17_Chr7g0258471 | 45.669 | 381 | 123 | 12 | 23 | 395 | 91 | 395 | 1.84e-78 | 248 |
| Msa0117810 | MtrunA17_Chr1g0175031 | 87.500 | 112 | 12 | 1 | 17 | 128 | 17 | 126 | 4.75e-56 | 181 |
| Msa0117810 | MtrunA17_Chr3g0122411 | 32.298 | 322 | 147 | 8 | 8 | 322 | 111 | 368 | 1.22e-31 | 124 |
| Msa0117810 | MtrunA17_Chr7g0231911 | 37.234 | 188 | 50 | 3 | 20 | 200 | 101 | 227 | 1.94e-26 | 108 |
| Msa0117810 | MtrunA17_Chr8g0334671 | 36.500 | 200 | 62 | 4 | 2 | 197 | 124 | 262 | 2.76e-26 | 107 |
| Msa0117810 | MtrunA17_Chr5g0420051 | 40.667 | 150 | 42 | 2 | 76 | 225 | 181 | 283 | 5.85e-26 | 108 |
| Msa0117810 | MtrunA17_Chr4g0061651 | 44.366 | 142 | 31 | 2 | 58 | 197 | 103 | 198 | 1.85e-25 | 107 |
| Msa0117810 | MtrunA17_Chr3g0132091 | 34.807 | 181 | 72 | 1 | 18 | 198 | 15 | 149 | 1.96e-25 | 105 |
| Msa0117810 | MtrunA17_Chr8g0360361 | 44.000 | 125 | 24 | 1 | 76 | 200 | 65 | 143 | 3.60e-25 | 101 |
| Msa0117810 | MtrunA17_Chr2g0308321 | 45.082 | 122 | 21 | 1 | 76 | 197 | 171 | 246 | 1.08e-24 | 105 |
| Msa0117810 | MtrunA17_Chr4g0046991 | 43.165 | 139 | 30 | 2 | 57 | 195 | 57 | 146 | 1.42e-24 | 98.6 |
| Msa0117810 | MtrunA17_Chr2g0282521 | 44.167 | 120 | 21 | 1 | 76 | 195 | 64 | 137 | 1.40e-23 | 95.5 |
| Msa0117810 | MtrunA17_Chr8g0386271 | 31.298 | 262 | 95 | 7 | 76 | 304 | 99 | 308 | 1.73e-23 | 100 |
| Msa0117810 | MtrunA17_Chr2g0302791 | 42.400 | 125 | 26 | 1 | 76 | 200 | 139 | 217 | 8.02e-23 | 100 |
| Msa0117810 | MtrunA17_Chr8g0377401 | 35.754 | 179 | 49 | 3 | 16 | 194 | 122 | 234 | 3.37e-22 | 94.7 |
| Msa0117810 | MtrunA17_Chr7g0224821 | 39.535 | 129 | 32 | 1 | 76 | 204 | 77 | 159 | 3.44e-22 | 97.1 |
| Msa0117810 | MtrunA17_Chr1g0162871 | 41.045 | 134 | 33 | 1 | 76 | 209 | 104 | 191 | 1.07e-21 | 97.4 |
| Msa0117810 | MtrunA17_Chr7g0270541 | 42.500 | 120 | 23 | 1 | 76 | 195 | 145 | 218 | 2.80e-21 | 96.3 |
| Msa0117810 | MtrunA17_Chr1g0194121 | 43.333 | 120 | 22 | 1 | 76 | 195 | 147 | 220 | 4.98e-21 | 95.5 |
| Msa0117810 | MtrunA17_Chr8g0377421 | 39.024 | 123 | 29 | 1 | 73 | 195 | 129 | 205 | 5.97e-19 | 86.7 |
| Msa0117810 | MtrunA17_Chr2g0317041 | 63.830 | 47 | 17 | 0 | 76 | 122 | 99 | 145 | 5.15e-14 | 69.3 |
| Msa0117810 | MtrunA17_Chr8g0377431 | 40.625 | 96 | 52 | 1 | 25 | 120 | 105 | 195 | 2.12e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117810 | AT3G57920.1 | 37.963 | 324 | 97 | 12 | 23 | 331 | 27 | 261 | 8.86e-44 | 156 |
| Msa0117810 | AT2G42200.1 | 38.621 | 290 | 105 | 8 | 23 | 305 | 32 | 255 | 2.41e-40 | 147 |
| Msa0117810 | AT5G43270.3 | 34.118 | 255 | 77 | 7 | 22 | 271 | 119 | 287 | 5.15e-27 | 112 |
| Msa0117810 | AT5G43270.1 | 34.118 | 255 | 77 | 7 | 22 | 271 | 119 | 287 | 5.15e-27 | 112 |
| Msa0117810 | AT5G43270.2 | 34.118 | 255 | 77 | 7 | 22 | 271 | 119 | 287 | 5.15e-27 | 112 |
| Msa0117810 | AT2G33810.1 | 45.000 | 120 | 20 | 1 | 76 | 195 | 54 | 127 | 4.64e-26 | 102 |
| Msa0117810 | AT3G15270.1 | 42.188 | 128 | 28 | 1 | 74 | 201 | 61 | 142 | 4.03e-25 | 101 |
| Msa0117810 | AT1G69170.1 | 45.455 | 121 | 20 | 1 | 76 | 196 | 124 | 198 | 3.75e-24 | 103 |
| Msa0117810 | AT5G50570.1 | 37.368 | 190 | 65 | 4 | 15 | 198 | 36 | 177 | 4.37e-24 | 102 |
| Msa0117810 | AT5G50570.2 | 37.368 | 190 | 65 | 4 | 15 | 198 | 36 | 177 | 4.37e-24 | 102 |
| Msa0117810 | AT5G50670.1 | 37.368 | 190 | 65 | 4 | 15 | 198 | 36 | 177 | 4.37e-24 | 102 |
| Msa0117810 | AT5G50670.2 | 37.368 | 190 | 65 | 4 | 15 | 198 | 36 | 177 | 4.37e-24 | 102 |
| Msa0117810 | AT1G53160.3 | 42.520 | 127 | 27 | 1 | 74 | 200 | 52 | 132 | 1.42e-23 | 96.7 |
| Msa0117810 | AT2G47070.1 | 44.355 | 124 | 23 | 1 | 76 | 199 | 106 | 183 | 1.44e-23 | 103 |
| Msa0117810 | AT1G02065.1 | 36.571 | 175 | 49 | 3 | 22 | 195 | 148 | 261 | 1.47e-23 | 100 |
| Msa0117810 | AT1G27370.6 | 33.684 | 190 | 66 | 3 | 13 | 197 | 117 | 251 | 1.88e-23 | 100 |
| Msa0117810 | AT1G53160.2 | 43.443 | 122 | 23 | 1 | 74 | 195 | 52 | 127 | 2.32e-23 | 96.3 |
| Msa0117810 | AT1G53160.1 | 43.443 | 122 | 23 | 1 | 74 | 195 | 52 | 127 | 2.32e-23 | 96.3 |
| Msa0117810 | AT1G27370.1 | 41.463 | 123 | 26 | 1 | 75 | 197 | 175 | 251 | 3.78e-23 | 100 |
| Msa0117810 | AT1G27370.5 | 41.463 | 123 | 26 | 1 | 75 | 197 | 175 | 251 | 3.78e-23 | 100 |
| Msa0117810 | AT1G27370.3 | 41.463 | 123 | 26 | 1 | 75 | 197 | 175 | 251 | 3.78e-23 | 100 |
| Msa0117810 | AT1G27370.2 | 41.463 | 123 | 26 | 1 | 75 | 197 | 175 | 251 | 3.78e-23 | 100 |
| Msa0117810 | AT1G27370.4 | 41.463 | 123 | 26 | 1 | 75 | 197 | 175 | 251 | 3.78e-23 | 100 |
| Msa0117810 | AT1G27370.7 | 41.463 | 123 | 26 | 1 | 75 | 197 | 175 | 251 | 3.78e-23 | 100 |
| Msa0117810 | AT1G27360.2 | 42.276 | 123 | 25 | 1 | 75 | 197 | 174 | 250 | 5.23e-23 | 100 |
| Msa0117810 | AT1G27360.1 | 42.276 | 123 | 25 | 1 | 75 | 197 | 174 | 250 | 5.23e-23 | 100 |
| Msa0117810 | AT1G27360.3 | 42.276 | 123 | 25 | 1 | 75 | 197 | 174 | 250 | 5.23e-23 | 100 |
| Msa0117810 | AT1G27360.4 | 42.276 | 123 | 25 | 1 | 75 | 197 | 174 | 250 | 5.23e-23 | 100 |
| Msa0117810 | AT1G20980.1 | 35.484 | 186 | 72 | 3 | 69 | 253 | 114 | 252 | 8.13e-23 | 101 |
| Msa0117810 | AT3G60030.1 | 40.580 | 138 | 33 | 2 | 67 | 201 | 115 | 206 | 1.21e-22 | 100 |
| Msa0117810 | AT1G76580.1 | 41.985 | 131 | 29 | 2 | 71 | 201 | 110 | 193 | 3.11e-22 | 99.8 |
| Msa0117810 | AT1G76580.2 | 41.985 | 131 | 29 | 2 | 71 | 201 | 110 | 193 | 3.15e-22 | 99.4 |
| Msa0117810 | AT1G76580.3 | 41.985 | 131 | 29 | 2 | 71 | 201 | 110 | 193 | 3.41e-22 | 99.4 |
| Msa0117810 | AT1G02065.2 | 42.157 | 102 | 43 | 2 | 22 | 122 | 148 | 234 | 3.44e-16 | 78.2 |
Find 103 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTTCTGTTGTTGTTTC+TGG | 0.016193 | 1_3:-39579691 | Msa0117810:CDS |
| GCCTGTTGTTGCAAGCATTT+TGG | 0.098366 | 1_3:-39578108 | Msa0117810:CDS |
| TTGGGTTCTTTGCTGGCCTT+TGG | 0.207138 | 1_3:-39578172 | Msa0117810:CDS |
| TTCAAACAAATGCTTCTTCT+TGG | 0.212145 | 1_3:-39576135 | Msa0117810:CDS |
| TGGGTTCTTTGCTGGCCTTT+GGG | 0.217976 | 1_3:-39578171 | Msa0117810:CDS |
| TCATTGTAGTTATCCATTAT+TGG | 0.242355 | 1_3:+39576310 | None:intergenic |
| CTTTCAGGCATTATTTGTTT+TGG | 0.242801 | 1_3:-39575813 | Msa0117810:three_prime_UTR |
| GCTTTCTCCGCCTTTCATTA+TGG | 0.263953 | 1_3:+39576861 | None:intergenic |
| ATTTGTTTGAAGATGATAAT+TGG | 0.265913 | 1_3:+39576147 | None:intergenic |
| CTCTTTGGAGAGTTAGGTTT+GGG | 0.266287 | 1_3:-39578190 | Msa0117810:CDS |
| TATTCCCTCTTTGGAGAGTT+AGG | 0.267604 | 1_3:-39578196 | Msa0117810:CDS |
| TCTTCATCATCTTCATCTTC+AGG | 0.271781 | 1_3:-39579829 | Msa0117810:CDS |
| AGGGTGGGGTATTCCCTCTT+TGG | 0.278805 | 1_3:-39578205 | Msa0117810:CDS |
| GTTAGGTTTGGGTTCTTTGC+TGG | 0.282774 | 1_3:-39578179 | Msa0117810:CDS |
| CATTTCCCATAGAAAACTTT+TGG | 0.292972 | 1_3:+39576470 | None:intergenic |
| TTCTGTTGTTGTTTCTGGTT+TGG | 0.298755 | 1_3:-39579686 | Msa0117810:CDS |
| GAAAGTAGGTGAGGAGAGTT+TGG | 0.319002 | 1_3:+39576805 | None:intergenic |
| CCCGAGGCTGTTCCTGCTCT+TGG | 0.325755 | 1_3:-39576076 | Msa0117810:CDS |
| TCATCTACCGAGTTTCTTGA+TGG | 0.335549 | 1_3:-39579958 | Msa0117810:CDS |
| CCACCAACACCAACAGCATT+AGG | 0.337043 | 1_3:+39579862 | None:intergenic |
| TTTCTTGATGGATTAAAGTT+TGG | 0.342712 | 1_3:-39579946 | Msa0117810:CDS |
| TACTAGACATCCTCCAATAA+TGG | 0.345407 | 1_3:-39576323 | Msa0117810:CDS |
| CTGGCACCACCAATGAGTTC+AGG | 0.351780 | 1_3:-39580012 | None:intergenic |
| CCCAAAATGCTTGCAACAAC+AGG | 0.365415 | 1_3:+39578107 | None:intergenic |
| CCAAGAGCAGGAACAGCCTC+GGG | 0.384160 | 1_3:+39576076 | None:intergenic |
| CCTAATGCTGTTGGTGTTGG+TGG | 0.385726 | 1_3:-39579862 | Msa0117810:CDS |
| AACAACTTGTTGAATTTCAA+TGG | 0.386985 | 1_3:-39576202 | Msa0117810:CDS |
| GGGTTCTTTGCTGGCCTTTG+GGG | 0.387809 | 1_3:-39578170 | Msa0117810:CDS |
| GTCATTTGTGAAATTATAAC+TGG | 0.390812 | 1_3:-39575951 | Msa0117810:three_prime_UTR |
| AGATCAGCCGAGCCAGTTCC+TGG | 0.394151 | 1_3:-39576433 | Msa0117810:CDS |
| CCTCTTTGGAGAGTTAGGTT+TGG | 0.397055 | 1_3:-39578191 | Msa0117810:CDS |
| CATGGAAGTTTGTTCCTTGT+AGG | 0.402971 | 1_3:+39576353 | None:intergenic |
| GAAATTATAACTGGTGGTAT+TGG | 0.405660 | 1_3:-39575942 | Msa0117810:three_prime_UTR |
| CACAAGGCAAGAACCATTAC+TGG | 0.410261 | 1_3:-39575997 | Msa0117810:CDS |
| GCTGTTCCTGCTCTTGGTCT+CGG | 0.413748 | 1_3:-39576070 | Msa0117810:CDS |
| TTGTTTCTGGTTTGGAGCAA+AGG | 0.417760 | 1_3:-39579678 | Msa0117810:CDS |
| AATTGTGTTGTTTGATTACC+AGG | 0.420845 | 1_3:+39576415 | None:intergenic |
| TGTTTCTAGAGTACCATGTT+TGG | 0.425256 | 1_3:+39576248 | None:intergenic |
| AAACTCTCCTCACCTACTTT+CGG | 0.426870 | 1_3:-39576803 | Msa0117810:intron |
| AGAAACTCGGTAGATGAGTT+AGG | 0.444243 | 1_3:+39579964 | None:intergenic |
| GTTGTTTGATTACCAGGAAC+TGG | 0.451194 | 1_3:+39576421 | None:intergenic |
| AGTTGCCGCAGGCGTTTAGC+TGG | 0.453018 | 1_3:-39576884 | Msa0117810:CDS |
| ACCAAGAGCAGGAACAGCCT+CGG | 0.457849 | 1_3:+39576075 | None:intergenic |
| GATGAGTTAGGTTGTGAAGA+GGG | 0.463824 | 1_3:+39579976 | None:intergenic |
| TTTGTTTGAAGATGATAATT+GGG | 0.467753 | 1_3:+39576148 | None:intergenic |
| GTTTGTTTCAACTTATGAGC+AGG | 0.471293 | 1_3:-39575856 | Msa0117810:three_prime_UTR |
| GGAACTGGCTCGGCTGATCT+CGG | 0.479236 | 1_3:+39576436 | None:intergenic |
| ATTATTGGAGGATGTCTAGT+AGG | 0.503531 | 1_3:+39576325 | None:intergenic |
| AGCTAATAATGACTTTCTGA+TGG | 0.505146 | 1_3:-39576506 | Msa0117810:CDS |
| CAGCTTCCTGAATTCGATCA+AGG | 0.515316 | 1_3:-39576914 | Msa0117810:CDS |
| GGTACAAAACCTGAACTCAT+TGG | 0.518582 | 1_3:+39580003 | None:intergenic |
| CAAATCAAACCTAATGCTGT+TGG | 0.533702 | 1_3:-39579871 | Msa0117810:CDS |
| AGCAAACAAGAGTATTAAAG+TGG | 0.540068 | 1_3:+39575974 | None:intergenic |
| CTCTTCTGTCAAACCAAACA+TGG | 0.546120 | 1_3:-39576261 | Msa0117810:CDS |
| AGTAGATCTGAGTGGTGCTA+AGG | 0.546255 | 1_3:-39579755 | Msa0117810:CDS |
| AAAGTAGGTGAGGAGAGTTT+GGG | 0.546461 | 1_3:+39576806 | None:intergenic |
| AGTATTAAAGTGGCCAGTAA+TGG | 0.550747 | 1_3:+39575984 | None:intergenic |
| CCAAACCTAACTCTCCAAAG+AGG | 0.551666 | 1_3:+39578191 | None:intergenic |
| TTGGCCTATGTGAACAATGT+GGG | 0.552994 | 1_3:-39575794 | Msa0117810:three_prime_UTR |
| GTTTAGCTGGCCATAATGAA+AGG | 0.554237 | 1_3:-39576871 | Msa0117810:CDS |
| TTCATCTTCAGGAATGAAGA+GGG | 0.561883 | 1_3:-39579818 | Msa0117810:CDS |
| AGATGAGTTAGGTTGTGAAG+AGG | 0.562239 | 1_3:+39579975 | None:intergenic |
| GGTTCTTTGCTGGCCTTTGG+GGG | 0.562338 | 1_3:-39578169 | Msa0117810:CDS |
| AATAGTTTCTAACCGAAAGT+AGG | 0.562750 | 1_3:+39576791 | None:intergenic |
| AAACCAGAAACAACAACAGA+AGG | 0.564585 | 1_3:+39579688 | None:intergenic |
| TGGTCTCGGTCAAAATTCGC+AGG | 0.564733 | 1_3:-39576056 | Msa0117810:CDS |
| ATCAAACAACACAATTTACC+TGG | 0.566011 | 1_3:-39576408 | Msa0117810:CDS |
| AAGTTGAAACAAACAAAAGC+AGG | 0.570923 | 1_3:+39575865 | None:intergenic |
| TTGATTACCAGGAACTGGCT+CGG | 0.574349 | 1_3:+39576426 | None:intergenic |
| TTAGGTTGTGAAGAGGGAGA+AGG | 0.574494 | 1_3:+39579982 | None:intergenic |
| CTACAAGGAACAAACTTCCA+TGG | 0.576359 | 1_3:-39576352 | Msa0117810:CDS |
| CTTTAATCCATCAAGAAACT+CGG | 0.578305 | 1_3:+39579951 | None:intergenic |
| GCTATTCATAGCGATCTTCG+TGG | 0.587187 | 1_3:-39576034 | Msa0117810:CDS |
| AAGGAAAACGAAGTTGCCGC+AGG | 0.588964 | 1_3:-39576895 | Msa0117810:CDS |
| TTGTAGTTATCCATTATTGG+AGG | 0.589950 | 1_3:+39576313 | None:intergenic |
| AAACCTAATGCTGTTGGTGT+TGG | 0.593485 | 1_3:-39579865 | Msa0117810:CDS |
| TATGTGAAACTTTCAGACAT+GGG | 0.598364 | 1_3:-39575760 | None:intergenic |
| CTTCATCTTCAGGAATGAAG+AGG | 0.601953 | 1_3:-39579819 | Msa0117810:CDS |
| CAAACCTAACTCTCCAAAGA+GGG | 0.603290 | 1_3:+39578192 | None:intergenic |
| GTATGTGAAACTTTCAGACA+TGG | 0.604908 | 1_3:-39575761 | None:intergenic |
| TTTGTGTCAACAGGTAACAA+TGG | 0.606651 | 1_3:-39576532 | Msa0117810:intron |
| AAACAACTCATCGACACCAT+CGG | 0.609352 | 1_3:-39576383 | Msa0117810:CDS |
| ATTGGAGGATGTCTAGTAGG+AGG | 0.622162 | 1_3:+39576328 | None:intergenic |
| AAGTTGTTCATCTCAACACT+TGG | 0.626493 | 1_3:+39576217 | None:intergenic |
| TTTGGCCTATGTGAACAATG+TGG | 0.627820 | 1_3:-39575795 | Msa0117810:three_prime_UTR |
| GGTGAGGTCAACGTGTCACA+AGG | 0.630256 | 1_3:-39576013 | Msa0117810:CDS |
| CATGTGACCTGCTACACTGT+TGG | 0.632750 | 1_3:+39579650 | None:intergenic |
| CAAGAGCAGGAACAGCCTCG+GGG | 0.634386 | 1_3:+39576077 | None:intergenic |
| TCAACCCACATTGTTCACAT+AGG | 0.637989 | 1_3:+39575790 | None:intergenic |
| CCTTGTAGGATAAAATCCGA+TGG | 0.645398 | 1_3:+39576367 | None:intergenic |
| TCATAGCGATCTTCGTGGTG+AGG | 0.646398 | 1_3:-39576029 | Msa0117810:CDS |
| AAGAGCAGGAACAGCCTCGG+GGG | 0.653642 | 1_3:+39576078 | None:intergenic |
| GGAGAGTTTGGGAAAACGCG+AGG | 0.654140 | 1_3:+39576817 | None:intergenic |
| TTTCTAACCGAAAGTAGGTG+AGG | 0.656699 | 1_3:+39576796 | None:intergenic |
| TATGGCCAGCTAAACGCCTG+CGG | 0.658585 | 1_3:+39576879 | None:intergenic |
| ATTTGTGAAATTATAACTGG+TGG | 0.659707 | 1_3:-39575948 | Msa0117810:three_prime_UTR |
| ATGTGAAACTTTCAGACATG+GGG | 0.660576 | 1_3:-39575759 | None:intergenic |
| GATGTCTAGTAGGAGGACCA+TGG | 0.664660 | 1_3:+39576335 | None:intergenic |
| TCATCTTCAGGAATGAAGAG+GGG | 0.688645 | 1_3:-39579817 | Msa0117810:CDS |
| GCTTCAACTTGACACCTACG+TGG | 0.700305 | 1_3:+39579784 | None:intergenic |
| TAGCTGGCCATAATGAAAGG+CGG | 0.703070 | 1_3:-39576868 | Msa0117810:CDS |
| GGGGAAATAATCATCCACGT+AGG | 0.738243 | 1_3:-39579798 | Msa0117810:CDS |
| GCTTGTAAAGTAGATCTGAG+TGG | 0.795108 | 1_3:-39579763 | Msa0117810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAATATTAAATTATA+TGG | - | chr1_3:39578268-39578287 | Msa0117810:intron | 0.0% |
| !!! | ATTTTAATATTAAATTATAT+GGG | - | chr1_3:39578269-39578288 | Msa0117810:intron | 0.0% |
| !!! | TTTTAATATATATTGTTTGT+TGG | - | chr1_3:39576324-39576343 | Msa0117810:CDS | 10.0% |
| !!! | ATTTTGTATTTCAATTTAAA+AGG | - | chr1_3:39576883-39576902 | Msa0117810:CDS | 10.0% |
| !!! | TTTGTAATTTGTTTAAATAA+AGG | + | chr1_3:39577786-39577805 | None:intergenic | 10.0% |
| !! | AATTATAAACAAAAGTAGAA+TGG | + | chr1_3:39576161-39576180 | None:intergenic | 15.0% |
| !! | AAAGAAAAAAACACTAAAAA+AGG | + | chr1_3:39576207-39576226 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTCTTTCTATAAT+GGG | - | chr1_3:39576214-39576233 | Msa0117810:CDS | 15.0% |
| !! | ATTTCATTTGAATTTGATAA+TGG | - | chr1_3:39576411-39576430 | Msa0117810:CDS | 15.0% |
| !!! | ATAATTTGTAAATGTATGTT+TGG | - | chr1_3:39576920-39576939 | Msa0117810:CDS | 15.0% |
| !!! | TTTAAAATGTATGATGTTTT+AGG | - | chr1_3:39577153-39577172 | Msa0117810:intron | 15.0% |
| !! | ACAACAAAAGAAAAAAAAAA+CGG | + | chr1_3:39577192-39577211 | None:intergenic | 15.0% |
| !!! | ATGTTTCAAATAAATGTTTT+GGG | - | chr1_3:39577249-39577268 | Msa0117810:intron | 15.0% |
| !! | AATTCTCAAATAAAAAGTTA+GGG | + | chr1_3:39579098-39579117 | None:intergenic | 15.0% |
| !!! | GTGTTTTTTTCTTTCTATAA+TGG | - | chr1_3:39576213-39576232 | Msa0117810:CDS | 20.0% |
| !! | TAAAAAAGACAAAATGAGTT+AGG | + | chr1_3:39576275-39576294 | None:intergenic | 20.0% |
| !! | ATCCTAGTAAAAATAAATGT+AGG | + | chr1_3:39576515-39576534 | None:intergenic | 20.0% |
| !!! | TACATTTATTTTTACTAGGA+TGG | - | chr1_3:39576514-39576533 | Msa0117810:CDS | 20.0% |
| !!! | TCATAAAATTCTGAAATTTC+AGG | + | chr1_3:39576555-39576574 | None:intergenic | 20.0% |
| !! | TCCAAATTTCAAAGAAAAAA+TGG | - | chr1_3:39576587-39576606 | Msa0117810:intron | 20.0% |
| !!! | ACCATTTTTTCTTTGAAATT+TGG | + | chr1_3:39576591-39576610 | None:intergenic | 20.0% |
| !! | TATTTCAATTTAAAAGGCTT+TGG | - | chr1_3:39576889-39576908 | Msa0117810:CDS | 20.0% |
| !! | ATTTGTGATTACTTAGAAAA+AGG | - | chr1_3:39577014-39577033 | Msa0117810:intron | 20.0% |
| !!! | ATTACAATACCAGATATTTT+AGG | - | chr1_3:39577117-39577136 | Msa0117810:intron | 20.0% |
| !!! | CATGTTTCAAATAAATGTTT+TGG | - | chr1_3:39577248-39577267 | Msa0117810:intron | 20.0% |
| !! | TAAATTACATCTTAGGTTTA+GGG | - | chr1_3:39577460-39577479 | Msa0117810:intron | 20.0% |
| !! | TCATTTAAAAGATTTGTGTA+AGG | + | chr1_3:39578193-39578212 | None:intergenic | 20.0% |
| !! | TCATTTATAGTAAAGAAATG+TGG | - | chr1_3:39578450-39578469 | Msa0117810:intron | 20.0% |
| !! | TCTCCATAGATATAAAAATT+TGG | + | chr1_3:39578621-39578640 | None:intergenic | 20.0% |
| !!! | AATTTTTATATCTATGGAGA+AGG | - | chr1_3:39578621-39578640 | Msa0117810:intron | 20.0% |
| !! | CAATTCTCAAATAAAAAGTT+AGG | + | chr1_3:39579099-39579118 | None:intergenic | 20.0% |
| !! | TTGATGAAACTATTTATCAT+AGG | + | chr1_3:39579165-39579184 | None:intergenic | 20.0% |
| !! | TTTGTTTGAAGATGATAATT+GGG | + | chr1_3:39579617-39579636 | None:intergenic | 20.0% |
| !! | ATTTGTTTGAAGATGATAAT+TGG | + | chr1_3:39579618-39579637 | None:intergenic | 20.0% |
| !!! | TACTAGTGCTTATTTTATTT+TGG | - | chr1_3:39579863-39579882 | Msa0117810:CDS | 20.0% |
| !!! | CTTATTTTATTTTGGAACTT+TGG | - | chr1_3:39579871-39579890 | Msa0117810:CDS | 20.0% |
| !!! | TTTCTTGATGGATTAAAGTT+TGG | - | chr1_3:39575816-39575835 | Msa0117810:three_prime_UTR | 25.0% |
| !!! | TTTTCTTTCTATAATGGGTA+TGG | - | chr1_3:39576219-39576238 | Msa0117810:CDS | 25.0% |
| ! | ATAGATTTCTTAGATGTTGT+TGG | - | chr1_3:39576377-39576396 | Msa0117810:CDS | 25.0% |
| ! | TCCTAATGTTCTTCTATTAT+TGG | - | chr1_3:39576448-39576467 | Msa0117810:CDS | 25.0% |
| ! | TCCAATAATAGAAGAACATT+AGG | + | chr1_3:39576452-39576471 | None:intergenic | 25.0% |
| !!! | TGCCTACATTTATTTTTACT+AGG | - | chr1_3:39576510-39576529 | Msa0117810:CDS | 25.0% |
| !!! | TCTTTGAAATTTGGAAAGAA+TGG | + | chr1_3:39576582-39576601 | None:intergenic | 25.0% |
| !! | TAATAAATAACTTGCCATGT+GGG | + | chr1_3:39576663-39576682 | None:intergenic | 25.0% |
| !! | TTAATAAATAACTTGCCATG+TGG | + | chr1_3:39576664-39576683 | None:intergenic | 25.0% |
| !!! | CAACATCTTACACTTTTTTT+TGG | + | chr1_3:39576983-39577002 | None:intergenic | 25.0% |
| !! | AAGTGTAAGATGTTGTTTAT+TGG | - | chr1_3:39576988-39577007 | Msa0117810:intron | 25.0% |
| !!! | AGAAAGTGTAGATTTTGAAA+AGG | - | chr1_3:39577074-39577093 | Msa0117810:intron | 25.0% |
| ! | TTTGAAAAGGCAAATGTATT+TGG | - | chr1_3:39577087-39577106 | Msa0117810:intron | 25.0% |
| ! | CAAAAGAAAAAAAAAACGGA+GGG | + | chr1_3:39577188-39577207 | None:intergenic | 25.0% |
| ! | ACAAAAGAAAAAAAAAACGG+AGG | + | chr1_3:39577189-39577208 | None:intergenic | 25.0% |
| !! | TTTTGTATATTAAACCTTCG+AGG | - | chr1_3:39577375-39577394 | Msa0117810:intron | 25.0% |
| ! | GTAAATTACATCTTAGGTTT+AGG | - | chr1_3:39577459-39577478 | Msa0117810:intron | 25.0% |
| ! | AAGAAATGTGGAAATAATCT+TGG | - | chr1_3:39578462-39578481 | Msa0117810:intron | 25.0% |
| ! | ATTAAGAAATTGAAATGCAG+GGG | + | chr1_3:39578536-39578555 | None:intergenic | 25.0% |
| ! | CATTAAGAAATTGAAATGCA+GGG | + | chr1_3:39578537-39578556 | None:intergenic | 25.0% |
| ! | TCATTAAGAAATTGAAATGC+AGG | + | chr1_3:39578538-39578557 | None:intergenic | 25.0% |
| !! | GAGCCAAATTTTTATATCTA+TGG | - | chr1_3:39578615-39578634 | Msa0117810:intron | 25.0% |
| !! | TTTTTAAACTCAAACTGACT+TGG | + | chr1_3:39578679-39578698 | None:intergenic | 25.0% |
| ! | CTTCGATCAAACAAATAAAA+AGG | + | chr1_3:39579039-39579058 | None:intergenic | 25.0% |
| !! | TTCATACCAAAAGTTTTCTA+TGG | - | chr1_3:39579286-39579305 | Msa0117810:intron | 25.0% |
| !! | TCATACCAAAAGTTTTCTAT+GGG | - | chr1_3:39579287-39579306 | Msa0117810:intron | 25.0% |
| ! | TCATTGTAGTTATCCATTAT+TGG | + | chr1_3:39579455-39579474 | None:intergenic | 25.0% |
| !!! | AACAACTTGTTGAATTTCAA+TGG | - | chr1_3:39579560-39579579 | Msa0117810:intron | 25.0% |
| ! | GTCATTTGTGAAATTATAAC+TGG | - | chr1_3:39579811-39579830 | Msa0117810:CDS | 25.0% |
| ! | ATTTGTGAAATTATAACTGG+TGG | - | chr1_3:39579814-39579833 | Msa0117810:CDS | 25.0% |
| CTTTAATCCATCAAGAAACT+CGG | + | chr1_3:39575814-39575833 | None:intergenic | 30.0% | |
| TGGTCAAAAAATCTACTTTG+AGG | - | chr1_3:39575836-39575855 | Msa0117810:three_prime_UTR | 30.0% | |
| TATTCATTCACCATTATACC+TGG | - | chr1_3:39576707-39576726 | Msa0117810:intron | 30.0% | |
| TCTTAATGAAGGATAAGCAT+GGG | - | chr1_3:39576798-39576817 | Msa0117810:intron | 30.0% | |
| ! | TTTAAAAGGCTTTGGTTGAT+TGG | - | chr1_3:39576897-39576916 | Msa0117810:CDS | 30.0% |
| AGTTGAAGTCCTAAAATATC+TGG | + | chr1_3:39577129-39577148 | None:intergenic | 30.0% | |
| AGTAAGAGAGTGAAGTTTAT+TGG | - | chr1_3:39577333-39577352 | Msa0117810:intron | 30.0% | |
| GATGTAATTTACACATCCTT+TGG | + | chr1_3:39577451-39577470 | None:intergenic | 30.0% | |
| GGATGTGTAAATTACATCTT+AGG | - | chr1_3:39577453-39577472 | Msa0117810:intron | 30.0% | |
| ! | GAAGATTTGCTTAATGTTGT+TGG | - | chr1_3:39578036-39578055 | Msa0117810:intron | 30.0% |
| AAACTTGAAATCCTTCATTG+TGG | + | chr1_3:39578078-39578097 | None:intergenic | 30.0% | |
| !!! | CAATGAAGGATTTCAAGTTT+TGG | - | chr1_3:39578078-39578097 | Msa0117810:intron | 30.0% |
| !!! | TTCAAGTTTTGGTGCTTAAA+TGG | - | chr1_3:39578089-39578108 | Msa0117810:intron | 30.0% |
| !!! | TCAAGTTTTGGTGCTTAAAT+GGG | - | chr1_3:39578090-39578109 | Msa0117810:intron | 30.0% |
| CATTATGGATATGTCTACAA+CGG | - | chr1_3:39578342-39578361 | Msa0117810:intron | 30.0% | |
| ATTATGGATATGTCTACAAC+GGG | - | chr1_3:39578343-39578362 | Msa0117810:intron | 30.0% | |
| TAGCTTATCTCTATAAGCAT+TGG | + | chr1_3:39578383-39578402 | None:intergenic | 30.0% | |
| GTTAATTTCTATGTGTGGAT+TGG | + | chr1_3:39578514-39578533 | None:intergenic | 30.0% | |
| CTTATGAAAAAGTTAGACGT+AGG | + | chr1_3:39578566-39578585 | None:intergenic | 30.0% | |
| !!! | CTTTTTCATAAGCATCGATA+AGG | - | chr1_3:39578574-39578593 | Msa0117810:intron | 30.0% |
| AATAGTTTCTAACCGAAAGT+AGG | + | chr1_3:39578974-39578993 | None:intergenic | 30.0% | |
| ! | ATTCCTTCTGTTACCTTTTA+AGG | - | chr1_3:39578991-39579010 | Msa0117810:intron | 30.0% |
| ! | TTCCTTCTGTTACCTTTTAA+GGG | - | chr1_3:39578992-39579011 | Msa0117810:intron | 30.0% |
| CTAAACAAATGACCCTTAAA+AGG | + | chr1_3:39579007-39579026 | None:intergenic | 30.0% | |
| GAGAATTGAGATAGAGAATT+AGG | - | chr1_3:39579111-39579130 | Msa0117810:intron | 30.0% | |
| AATGAGAGGATTACTAGTTA+AGG | - | chr1_3:39579137-39579156 | Msa0117810:intron | 30.0% | |
| ATGAGAGGATTACTAGTTAA+GGG | - | chr1_3:39579138-39579157 | Msa0117810:intron | 30.0% | |
| !!! | TGTTTTGTTTTTGTGTCAAC+AGG | - | chr1_3:39579221-39579240 | Msa0117810:intron | 30.0% |
| AGCTAATAATGACTTTCTGA+TGG | - | chr1_3:39579256-39579275 | Msa0117810:intron | 30.0% | |
| ! | CATTTCCCATAGAAAACTTT+TGG | + | chr1_3:39579295-39579314 | None:intergenic | 30.0% |
| !! | AATTGTGTTGTTTGATTACC+AGG | + | chr1_3:39579350-39579369 | None:intergenic | 30.0% |
| ATCAAACAACACAATTTACC+TGG | - | chr1_3:39579354-39579373 | Msa0117810:intron | 30.0% | |
| TTGTAGTTATCCATTATTGG+AGG | + | chr1_3:39579452-39579471 | None:intergenic | 30.0% | |
| TTCAAACAAATGCTTCTTCT+TGG | - | chr1_3:39579627-39579646 | Msa0117810:intron | 30.0% | |
| !! | TGCTTCTTCTTGGTTTTTAA+AGG | - | chr1_3:39579637-39579656 | Msa0117810:intron | 30.0% |
| !! | GCTTCTTCTTGGTTTTTAAA+GGG | - | chr1_3:39579638-39579657 | Msa0117810:intron | 30.0% |
| !! | AGCAAACAAGAGTATTAAAG+TGG | + | chr1_3:39579791-39579810 | None:intergenic | 30.0% |
| GAAATTATAACTGGTGGTAT+TGG | - | chr1_3:39579820-39579839 | Msa0117810:CDS | 30.0% | |
| AAGTTGAAACAAACAAAAGC+AGG | + | chr1_3:39579900-39579919 | None:intergenic | 30.0% | |
| ! | TATCATTTTGTGGAACTTTC+AGG | - | chr1_3:39579934-39579953 | Msa0117810:CDS | 30.0% |
| ! | CTTTCAGGCATTATTTGTTT+TGG | - | chr1_3:39579949-39579968 | Msa0117810:CDS | 30.0% |
| CAAATCAAACCTAATGCTGT+TGG | - | chr1_3:39575891-39575910 | Msa0117810:three_prime_UTR | 35.0% | |
| TCTTCATCATCTTCATCTTC+AGG | - | chr1_3:39575933-39575952 | Msa0117810:three_prime_UTR | 35.0% | |
| TTCATCTTCAGGAATGAAGA+GGG | - | chr1_3:39575944-39575963 | Msa0117810:three_prime_UTR | 35.0% | |
| AAACCAGAAACAACAACAGA+AGG | + | chr1_3:39576077-39576096 | None:intergenic | 35.0% | |
| !! | TTCTGTTGTTGTTTCTGGTT+TGG | - | chr1_3:39576076-39576095 | Msa0117810:CDS | 35.0% |
| !! | TTTCTATAATGGGTATGGTC+TGG | - | chr1_3:39576224-39576243 | Msa0117810:CDS | 35.0% |
| ATGAGTTAGGCAAAACAAGA+AGG | + | chr1_3:39576262-39576281 | None:intergenic | 35.0% | |
| GTTCTTCTATTATTGGAGAC+TGG | - | chr1_3:39576455-39576474 | Msa0117810:CDS | 35.0% | |
| ATTGACATCAACTTCTCAAG+GGG | + | chr1_3:39576615-39576634 | None:intergenic | 35.0% | |
| GATTGACATCAACTTCTCAA+GGG | + | chr1_3:39576616-39576635 | None:intergenic | 35.0% | |
| AGATTGACATCAACTTCTCA+AGG | + | chr1_3:39576617-39576636 | None:intergenic | 35.0% | |
| GTAGAAAAAATGATCCCACA+TGG | - | chr1_3:39576646-39576665 | Msa0117810:intron | 35.0% | |
| TCACATGGCTAAAGCTAAAA+GGG | + | chr1_3:39576737-39576756 | None:intergenic | 35.0% | |
| GTCTTAATGAAGGATAAGCA+TGG | - | chr1_3:39576797-39576816 | Msa0117810:intron | 35.0% | |
| ATATTAAACCTTCGAGGCAT+AGG | - | chr1_3:39577381-39577400 | Msa0117810:intron | 35.0% | |
| GTAATTTACACATCCTTTGG+TGG | + | chr1_3:39577448-39577467 | None:intergenic | 35.0% | |
| !! | CATCTTAGGTTTAGGGTTTT+TGG | - | chr1_3:39577467-39577486 | Msa0117810:intron | 35.0% |
| ACATCACTTGTGTGACATTA+TGG | - | chr1_3:39577713-39577732 | Msa0117810:intron | 35.0% | |
| CATGAGAAAAACTACAAGAG+GGG | + | chr1_3:39577960-39577979 | None:intergenic | 35.0% | |
| GCATGAGAAAAACTACAAGA+GGG | + | chr1_3:39577961-39577980 | None:intergenic | 35.0% | |
| TGCATGAGAAAAACTACAAG+AGG | + | chr1_3:39577962-39577981 | None:intergenic | 35.0% | |
| ATCCATAATGGTACCTATTG+AGG | + | chr1_3:39578332-39578351 | None:intergenic | 35.0% | |
| CGTTGTAGACATATCCATAA+TGG | + | chr1_3:39578344-39578363 | None:intergenic | 35.0% | |
| TTATGGATATGTCTACAACG+GGG | - | chr1_3:39578344-39578363 | Msa0117810:intron | 35.0% | |
| !! | TATAAGCATTGGTACCTCAT+AGG | + | chr1_3:39578372-39578391 | None:intergenic | 35.0% |
| !!! | ATAAGCATCGATAAGGCTTT+TGG | - | chr1_3:39578581-39578600 | Msa0117810:intron | 35.0% |
| ! | GAGAAGGTCTTATGAATTAG+AGG | - | chr1_3:39578637-39578656 | Msa0117810:intron | 35.0% |
| TTGAGATAAAAACGATCCCA+CGG | + | chr1_3:39578786-39578805 | None:intergenic | 35.0% | |
| GTTAAAAATGAGCTTGGTTG+GGG | + | chr1_3:39578926-39578945 | None:intergenic | 35.0% | |
| GGTTAAAAATGAGCTTGGTT+GGG | + | chr1_3:39578927-39578946 | None:intergenic | 35.0% | |
| AGGTTAAAAATGAGCTTGGT+TGG | + | chr1_3:39578928-39578947 | None:intergenic | 35.0% | |
| AGAGAATTAGGCTAAATGAG+AGG | - | chr1_3:39579123-39579142 | Msa0117810:intron | 35.0% | |
| TTTGTGTCAACAGGTAACAA+TGG | - | chr1_3:39579230-39579249 | Msa0117810:intron | 35.0% | |
| ATTATTGGAGGATGTCTAGT+AGG | + | chr1_3:39579440-39579459 | None:intergenic | 35.0% | |
| TACTAGACATCCTCCAATAA+TGG | - | chr1_3:39579439-39579458 | Msa0117810:intron | 35.0% | |
| !! | TGTTTCTAGAGTACCATGTT+TGG | + | chr1_3:39579517-39579536 | None:intergenic | 35.0% |
| AAGTTGTTCATCTCAACACT+TGG | + | chr1_3:39579548-39579567 | None:intergenic | 35.0% | |
| AGTATTAAAGTGGCCAGTAA+TGG | + | chr1_3:39579781-39579800 | None:intergenic | 35.0% | |
| GTTTGTTTCAACTTATGAGC+AGG | - | chr1_3:39579906-39579925 | Msa0117810:CDS | 35.0% | |
| ! | GCAGGATCTTTATCATTTTG+TGG | - | chr1_3:39579924-39579943 | Msa0117810:CDS | 35.0% |
| ! | GATGAGTTAGGTTGTGAAGA+GGG | + | chr1_3:39575789-39575808 | None:intergenic | 40.0% |
| ! | AGATGAGTTAGGTTGTGAAG+AGG | + | chr1_3:39575790-39575809 | None:intergenic | 40.0% |
| AGAAACTCGGTAGATGAGTT+AGG | + | chr1_3:39575801-39575820 | None:intergenic | 40.0% | |
| TCATCTACCGAGTTTCTTGA+TGG | - | chr1_3:39575804-39575823 | Msa0117810:three_prime_UTR | 40.0% | |
| AAACCTAATGCTGTTGGTGT+TGG | - | chr1_3:39575897-39575916 | Msa0117810:three_prime_UTR | 40.0% | |
| CTTCATCTTCAGGAATGAAG+AGG | - | chr1_3:39575943-39575962 | Msa0117810:three_prime_UTR | 40.0% | |
| TCATCTTCAGGAATGAAGAG+GGG | - | chr1_3:39575945-39575964 | Msa0117810:three_prime_UTR | 40.0% | |
| GCTTGTAAAGTAGATCTGAG+TGG | - | chr1_3:39575999-39576018 | Msa0117810:CDS | 40.0% | |
| !! | TCTCCTTCTGTTGTTGTTTC+TGG | - | chr1_3:39576071-39576090 | Msa0117810:CDS | 40.0% |
| !! | TTGTTTCTGGTTTGGAGCAA+AGG | - | chr1_3:39576084-39576103 | Msa0117810:CDS | 40.0% |
| TTGACATCAACTTCTCAAGG+GGG | + | chr1_3:39576614-39576633 | None:intergenic | 40.0% | |
| AAAGGGTCTTCCAGGTATAA+TGG | + | chr1_3:39576720-39576739 | None:intergenic | 40.0% | |
| TAAAGCTAAAAGGGTCTTCC+AGG | + | chr1_3:39576728-39576747 | None:intergenic | 40.0% | |
| GTCACATGGCTAAAGCTAAA+AGG | + | chr1_3:39576738-39576757 | None:intergenic | 40.0% | |
| TGTCCTACTGGTAAAAGAAG+TGG | - | chr1_3:39576759-39576778 | Msa0117810:intron | 40.0% | |
| GTCCTACTGGTAAAAGAAGT+GGG | - | chr1_3:39576760-39576779 | Msa0117810:intron | 40.0% | |
| ! | TACCCACTTCTTTTACCAGT+AGG | + | chr1_3:39576765-39576784 | None:intergenic | 40.0% |
| TAAAAGAAGTGGGTAGTGAG+AGG | - | chr1_3:39576770-39576789 | Msa0117810:intron | 40.0% | |
| AAAAGAAGTGGGTAGTGAGA+GGG | - | chr1_3:39576771-39576790 | Msa0117810:intron | 40.0% | |
| !! | GAGAGGGTTAGTCTTAATGA+AGG | - | chr1_3:39576787-39576806 | Msa0117810:intron | 40.0% |
| !!! | TTTAGGGTTTTTGGTTGCTC+TGG | - | chr1_3:39577476-39577495 | Msa0117810:intron | 40.0% |
| !!! | TTAGGGTTTTTGGTTGCTCT+GGG | - | chr1_3:39577477-39577496 | Msa0117810:intron | 40.0% |
| !!! | AGTTCTCTCTCTGGCTTTTT+AGG | - | chr1_3:39577537-39577556 | Msa0117810:intron | 40.0% |
| !!! | GTTCTCTCTCTGGCTTTTTA+GGG | - | chr1_3:39577538-39577557 | Msa0117810:intron | 40.0% |
| ! | TATTCCCTCTTTGGAGAGTT+AGG | - | chr1_3:39577566-39577585 | Msa0117810:intron | 40.0% |
| CAAACCTAACTCTCCAAAGA+GGG | + | chr1_3:39577573-39577592 | None:intergenic | 40.0% | |
| ! | CTCTTTGGAGAGTTAGGTTT+GGG | - | chr1_3:39577572-39577591 | Msa0117810:intron | 40.0% |
| ! | CCTGTTGTTGCAAGCATTTT+GGG | - | chr1_3:39577655-39577674 | Msa0117810:intron | 40.0% |
| ! | CTGTTGTTGCAAGCATTTTG+GGG | - | chr1_3:39577656-39577675 | Msa0117810:intron | 40.0% |
| ! | TGTTGTTGCAAGCATTTTGG+GGG | - | chr1_3:39577657-39577676 | Msa0117810:intron | 40.0% |
| TGACACTACAATGTCAACCA+AGG | - | chr1_3:39577878-39577897 | Msa0117810:intron | 40.0% | |
| CGAAAACAACAGACAAACCT+TGG | + | chr1_3:39577898-39577917 | None:intergenic | 40.0% | |
| !!! | GGTTTGTCTGTTGTTTTCGT+TGG | - | chr1_3:39577899-39577918 | Msa0117810:intron | 40.0% |
| TATGAGATCCTCTCCTCAAT+AGG | - | chr1_3:39578316-39578335 | Msa0117810:intron | 40.0% | |
| TAATGGTACCTATTGAGGAG+AGG | + | chr1_3:39578327-39578346 | None:intergenic | 40.0% | |
| CTCCTCAATAGGTACCATTA+TGG | - | chr1_3:39578327-39578346 | Msa0117810:intron | 40.0% | |
| TAGAGATAAGCTAACCCCAT+TGG | - | chr1_3:39578390-39578409 | Msa0117810:intron | 40.0% | |
| AGAGATAAGCTAACCCCATT+GGG | - | chr1_3:39578391-39578410 | Msa0117810:intron | 40.0% | |
| CAGGGGTTAATTTCTATGTG+TGG | + | chr1_3:39578519-39578538 | None:intergenic | 40.0% | |
| CTGTGCAAGTTCTATCAAAG+AGG | + | chr1_3:39578821-39578840 | None:intergenic | 40.0% | |
| CTCTTTGATAGAACTTGCAC+AGG | - | chr1_3:39578819-39578838 | Msa0117810:intron | 40.0% | |
| ! | CGTTTTCCTTGATCGAATTC+AGG | + | chr1_3:39578857-39578876 | None:intergenic | 40.0% |
| GTTTAGCTGGCCATAATGAA+AGG | - | chr1_3:39578891-39578910 | Msa0117810:intron | 40.0% | |
| AAAGTAGGTGAGGAGAGTTT+GGG | + | chr1_3:39578959-39578978 | None:intergenic | 40.0% | |
| AAACTCTCCTCACCTACTTT+CGG | - | chr1_3:39578959-39578978 | Msa0117810:intron | 40.0% | |
| TTTCTAACCGAAAGTAGGTG+AGG | + | chr1_3:39578969-39578988 | None:intergenic | 40.0% | |
| GACCCTTAAAAGGTAACAGA+AGG | + | chr1_3:39578997-39579016 | None:intergenic | 40.0% | |
| GTTGTTTGATTACCAGGAAC+TGG | + | chr1_3:39579344-39579363 | None:intergenic | 40.0% | |
| AAACAACTCATCGACACCAT+CGG | - | chr1_3:39579379-39579398 | Msa0117810:intron | 40.0% | |
| CCTTGTAGGATAAAATCCGA+TGG | + | chr1_3:39579398-39579417 | None:intergenic | 40.0% | |
| ! | CCATCGGATTTTATCCTACA+AGG | - | chr1_3:39579395-39579414 | Msa0117810:intron | 40.0% |
| ! | CATGGAAGTTTGTTCCTTGT+AGG | + | chr1_3:39579412-39579431 | None:intergenic | 40.0% |
| CTACAAGGAACAAACTTCCA+TGG | - | chr1_3:39579410-39579429 | Msa0117810:intron | 40.0% | |
| CTCTTCTGTCAAACCAAACA+TGG | - | chr1_3:39579501-39579520 | Msa0117810:intron | 40.0% | |
| TTTGGCCTATGTGAACAATG+TGG | - | chr1_3:39579967-39579986 | Msa0117810:CDS | 40.0% | |
| TTGGCCTATGTGAACAATGT+GGG | - | chr1_3:39579968-39579987 | Msa0117810:CDS | 40.0% | |
| TCAACCCACATTGTTCACAT+AGG | + | chr1_3:39579975-39579994 | None:intergenic | 40.0% | |
| ! | TTAGGTTGTGAAGAGGGAGA+AGG | + | chr1_3:39575783-39575802 | None:intergenic | 45.0% |
| GGGGAAATAATCATCCACGT+AGG | - | chr1_3:39575964-39575983 | Msa0117810:three_prime_UTR | 45.0% | |
| ! | AGTAGATCTGAGTGGTGCTA+AGG | - | chr1_3:39576007-39576026 | Msa0117810:CDS | 45.0% |
| TACCAGTAGGACATGTCACA+TGG | + | chr1_3:39576752-39576771 | None:intergenic | 45.0% | |
| CAATGCATGAACACCACCAA+AGG | - | chr1_3:39577432-39577451 | Msa0117810:intron | 45.0% | |
| !!! | TCTCTCTGGCTTTTTAGGGT+GGG | - | chr1_3:39577542-39577561 | Msa0117810:intron | 45.0% |
| CCAAACCTAACTCTCCAAAG+AGG | + | chr1_3:39577574-39577593 | None:intergenic | 45.0% | |
| ! | CCTCTTTGGAGAGTTAGGTT+TGG | - | chr1_3:39577571-39577590 | Msa0117810:intron | 45.0% |
| ! | GTTAGGTTTGGGTTCTTTGC+TGG | - | chr1_3:39577583-39577602 | Msa0117810:intron | 45.0% |
| ! | GCCTGTTGTTGCAAGCATTT+TGG | - | chr1_3:39577654-39577673 | Msa0117810:intron | 45.0% |
| CCCAAAATGCTTGCAACAAC+AGG | + | chr1_3:39577658-39577677 | None:intergenic | 45.0% | |
| ! | GTTGTTGCAAGCATTTTGGG+GGG | - | chr1_3:39577658-39577677 | Msa0117810:intron | 45.0% |
| !! | AGCATTTTGGGGGGTTTCTT+TGG | - | chr1_3:39577667-39577686 | Msa0117810:intron | 45.0% |
| !! | GCATTTTGGGGGGTTTCTTT+GGG | - | chr1_3:39577668-39577687 | Msa0117810:intron | 45.0% |
| GTCACGTGACACACTATGAT+TGG | + | chr1_3:39577761-39577780 | None:intergenic | 45.0% | |
| GAAAACCAGATGTCACGTTG+TGG | - | chr1_3:39577834-39577853 | Msa0117810:intron | 45.0% | |
| GTGTCAATGTCATGTCGCAT+TGG | + | chr1_3:39577864-39577883 | None:intergenic | 45.0% | |
| !! | ACCAAGAGCATCCACAATGA+AGG | - | chr1_3:39578064-39578083 | Msa0117810:intron | 45.0% |
| TCCTTCATTGTGGATGCTCT+TGG | + | chr1_3:39578068-39578087 | None:intergenic | 45.0% | |
| GTGCTTAAATGGGTCATACG+CGG | - | chr1_3:39578100-39578119 | Msa0117810:CDS | 45.0% | |
| TATGGGACCAACAAAGAGAG+AGG | - | chr1_3:39578286-39578305 | Msa0117810:intron | 45.0% | |
| ATGGGACCAACAAAGAGAGA+GGG | - | chr1_3:39578287-39578306 | Msa0117810:intron | 45.0% | |
| TAAGCACCCTCTCTCTTTGT+TGG | + | chr1_3:39578296-39578315 | None:intergenic | 45.0% | |
| GAGATAAGCTAACCCCATTG+GGG | - | chr1_3:39578392-39578411 | Msa0117810:intron | 45.0% | |
| !! | GACTTGGCTCTGGTTCAAAT+TGG | + | chr1_3:39578663-39578682 | None:intergenic | 45.0% |
| !! | AACTCAAACTGACTTGGCTC+TGG | + | chr1_3:39578673-39578692 | None:intergenic | 45.0% |
| ACCACACTGTTACATAACCG+TGG | - | chr1_3:39578766-39578785 | Msa0117810:intron | 45.0% | |
| CCACACTGTTACATAACCGT+GGG | - | chr1_3:39578767-39578786 | Msa0117810:intron | 45.0% | |
| CAGCTTCCTGAATTCGATCA+AGG | - | chr1_3:39578848-39578867 | Msa0117810:intron | 45.0% | |
| TAGCTGGCCATAATGAAAGG+CGG | - | chr1_3:39578894-39578913 | Msa0117810:intron | 45.0% | |
| GCTTTCTCCGCCTTTCATTA+TGG | + | chr1_3:39578904-39578923 | None:intergenic | 45.0% | |
| CGCGAGGTTAAAAATGAGCT+TGG | + | chr1_3:39578932-39578951 | None:intergenic | 45.0% | |
| GAAAGTAGGTGAGGAGAGTT+TGG | + | chr1_3:39578960-39578979 | None:intergenic | 45.0% | |
| TTGATTACCAGGAACTGGCT+CGG | + | chr1_3:39579339-39579358 | None:intergenic | 45.0% | |
| !! | TGTCGATGAGTTGTTTTGCC+AGG | + | chr1_3:39579375-39579394 | None:intergenic | 45.0% |
| ATTGGAGGATGTCTAGTAGG+AGG | + | chr1_3:39579437-39579456 | None:intergenic | 45.0% | |
| GCTATTCATAGCGATCTTCG+TGG | - | chr1_3:39579728-39579747 | Msa0117810:CDS | 45.0% | |
| CACAAGGCAAGAACCATTAC+TGG | - | chr1_3:39579765-39579784 | Msa0117810:CDS | 45.0% | |
| !! | AAATATCTTTAAATTTAAAT+TGG | + | chr1_3:39576957-39576976 | None:intergenic | 5.0% |
| CCACCAACACCAACAGCATT+AGG | + | chr1_3:39575903-39575922 | None:intergenic | 50.0% | |
| !! | CCTAATGCTGTTGGTGTTGG+TGG | - | chr1_3:39575900-39575919 | Msa0117810:three_prime_UTR | 50.0% |
| GCTTCAACTTGACACCTACG+TGG | + | chr1_3:39575981-39576000 | None:intergenic | 50.0% | |
| ! | GGTTTTGCCAACAGTGTAGC+AGG | - | chr1_3:39576105-39576124 | Msa0117810:CDS | 50.0% |
| CATGTGACCTGCTACACTGT+TGG | + | chr1_3:39576115-39576134 | None:intergenic | 50.0% | |
| AGCCATGTGACATGTCCTAC+TGG | - | chr1_3:39576747-39576766 | Msa0117810:intron | 50.0% | |
| CAGCAAAACCTATGCCTCGA+AGG | + | chr1_3:39577392-39577411 | None:intergenic | 50.0% | |
| ! | CTTCGAGGCATAGGTTTTGC+TGG | - | chr1_3:39577390-39577409 | Msa0117810:intron | 50.0% |
| AGAGAACTCCACCAGGAGAA+CGG | + | chr1_3:39577525-39577544 | None:intergenic | 50.0% | |
| !!! | CTCTCTCTGGCTTTTTAGGG+TGG | - | chr1_3:39577541-39577560 | Msa0117810:intron | 50.0% |
| !!! | CTCTCTGGCTTTTTAGGGTG+GGG | - | chr1_3:39577543-39577562 | Msa0117810:intron | 50.0% |
| !! | TTGGGTTCTTTGCTGGCCTT+TGG | - | chr1_3:39577590-39577609 | Msa0117810:intron | 50.0% |
| !! | TGGGTTCTTTGCTGGCCTTT+GGG | - | chr1_3:39577591-39577610 | Msa0117810:intron | 50.0% |
| TAAGCAAACACGACCCCCAA+AGG | + | chr1_3:39577609-39577628 | None:intergenic | 50.0% | |
| TTTGGGGGTCGTGTTTGCTT+AGG | - | chr1_3:39577608-39577627 | Msa0117810:intron | 50.0% | |
| GTCAACCACAACGTGACATC+TGG | + | chr1_3:39577842-39577861 | None:intergenic | 50.0% | |
| ! | TTGTTTTCGTTGGCCATCGC+TGG | - | chr1_3:39577909-39577928 | Msa0117810:intron | 50.0% |
| CATGCAATACCAAGCAGGGA+AGG | + | chr1_3:39577937-39577956 | None:intergenic | 50.0% | |
| ! | TCTACAACGGGGTACCTATG+AGG | - | chr1_3:39578355-39578374 | Msa0117810:intron | 50.0% |
| TAAGCTAACCCCATTGGGGA+TGG | - | chr1_3:39578396-39578415 | Msa0117810:intron | 50.0% | |
| CTCTTAGACCATCCCCAATG+GGG | + | chr1_3:39578407-39578426 | None:intergenic | 50.0% | |
| GCTCTTAGACCATCCCCAAT+GGG | + | chr1_3:39578408-39578427 | None:intergenic | 50.0% | |
| AGCTCTTAGACCATCCCCAA+TGG | + | chr1_3:39578409-39578428 | None:intergenic | 50.0% | |
| CCCACGGTTATGTAACAGTG+TGG | + | chr1_3:39578770-39578789 | None:intergenic | 50.0% | |
| AAGGAAAACGAAGTTGCCGC+AGG | - | chr1_3:39578867-39578886 | Msa0117810:intron | 50.0% | |
| GATGTCTAGTAGGAGGACCA+TGG | + | chr1_3:39579430-39579449 | None:intergenic | 50.0% | |
| ! | TTTTGACCGAGACCAAGAGC+AGG | + | chr1_3:39579701-39579720 | None:intergenic | 50.0% |
| TGGTCTCGGTCAAAATTCGC+AGG | - | chr1_3:39579706-39579725 | Msa0117810:CDS | 50.0% | |
| TCATAGCGATCTTCGTGGTG+AGG | - | chr1_3:39579733-39579752 | Msa0117810:CDS | 50.0% | |
| !!! | GGGTTTTTGGTTGCTCTGGG+CGG | - | chr1_3:39577480-39577499 | Msa0117810:intron | 55.0% |
| TCCTGGTGGAGTTCTCTCTC+TGG | - | chr1_3:39577528-39577547 | Msa0117810:intron | 55.0% | |
| ! | AGGGTGGGGTATTCCCTCTT+TGG | - | chr1_3:39577557-39577576 | Msa0117810:intron | 55.0% |
| !! | GGGTTCTTTGCTGGCCTTTG+GGG | - | chr1_3:39577592-39577611 | Msa0117810:intron | 55.0% |
| !! | GGTTCTTTGCTGGCCTTTGG+GGG | - | chr1_3:39577593-39577612 | Msa0117810:intron | 55.0% |
| GGGGCATGCAATACCAAGCA+GGG | + | chr1_3:39577941-39577960 | None:intergenic | 55.0% | |
| ! | AGGGGCATGCAATACCAAGC+AGG | + | chr1_3:39577942-39577961 | None:intergenic | 55.0% |
| TATGGCCAGCTAAACGCCTG+CGG | + | chr1_3:39578886-39578905 | None:intergenic | 55.0% | |
| GGAGAGTTTGGGAAAACGCG+AGG | + | chr1_3:39578948-39578967 | None:intergenic | 55.0% | |
| TCGTAACTGTTTGTCCCCCG+AGG | - | chr1_3:39579670-39579689 | Msa0117810:CDS | 55.0% | |
| ACCAAGAGCAGGAACAGCCT+CGG | + | chr1_3:39579690-39579709 | None:intergenic | 55.0% | |
| GCTGTTCCTGCTCTTGGTCT+CGG | - | chr1_3:39579692-39579711 | Msa0117810:CDS | 55.0% | |
| GGTGAGGTCAACGTGTCACA+AGG | - | chr1_3:39579749-39579768 | Msa0117810:CDS | 55.0% | |
| CTTGTCCTCAGCCGTTCTCC+TGG | - | chr1_3:39577511-39577530 | Msa0117810:intron | 60.0% | |
| GCCAGAGAGAGAACTCCACC+AGG | + | chr1_3:39577532-39577551 | None:intergenic | 60.0% | |
| AGTTGCCGCAGGCGTTTAGC+TGG | - | chr1_3:39578878-39578897 | Msa0117810:intron | 60.0% | |
| !! | GGAACTGGCTCGGCTGATCT+CGG | + | chr1_3:39579329-39579348 | None:intergenic | 60.0% |
| AGATCAGCCGAGCCAGTTCC+TGG | - | chr1_3:39579329-39579348 | Msa0117810:intron | 60.0% | |
| AAGAGCAGGAACAGCCTCGG+GGG | + | chr1_3:39579687-39579706 | None:intergenic | 60.0% | |
| CAAGAGCAGGAACAGCCTCG+GGG | + | chr1_3:39579688-39579707 | None:intergenic | 60.0% | |
| CCAAGAGCAGGAACAGCCTC+GGG | + | chr1_3:39579689-39579708 | None:intergenic | 60.0% | |
| GTCCTCAGCCGTTCTCCTGG+TGG | - | chr1_3:39577514-39577533 | Msa0117810:intron | 65.0% | |
| CTCCACCAGGAGAACGGCTG+AGG | + | chr1_3:39577519-39577538 | None:intergenic | 65.0% | |
| !! | AGCAGGGAAGGCACCAGCGA+TGG | + | chr1_3:39577925-39577944 | None:intergenic | 65.0% |
| TCGCTGGTGCCTTCCCTGCT+TGG | - | chr1_3:39577925-39577944 | Msa0117810:intron | 65.0% | |
| CCCGAGGCTGTTCCTGCTCT+TGG | - | chr1_3:39579686-39579705 | Msa0117810:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 39575762 | 39580022 | 39575762 | ID=Msa0117810;Name=Msa0117810 |
| chr1_3 | mRNA | 39575762 | 39580022 | 39575762 | ID=Msa0117810-mRNA-1;Parent=Msa0117810;Name=Msa0117810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.33|0.5|0.75|1|1|4|226|398 |
| chr1_3 | exon | 39575762 | 39576541 | 39575762 | ID=Msa0117810-mRNA-1:exon:12199;Parent=Msa0117810-mRNA-1 |
| chr1_3 | exon | 39576804 | 39576943 | 39576804 | ID=Msa0117810-mRNA-1:exon:12198;Parent=Msa0117810-mRNA-1 |
| chr1_3 | exon | 39578095 | 39578225 | 39578095 | ID=Msa0117810-mRNA-1:exon:12197;Parent=Msa0117810-mRNA-1 |
| chr1_3 | exon | 39579651 | 39580022 | 39579651 | ID=Msa0117810-mRNA-1:exon:12196;Parent=Msa0117810-mRNA-1 |
| chr1_3 | CDS | 39579651 | 39580022 | 39579651 | ID=Msa0117810-mRNA-1:cds;Parent=Msa0117810-mRNA-1 |
| chr1_3 | CDS | 39578095 | 39578225 | 39578095 | ID=Msa0117810-mRNA-1:cds;Parent=Msa0117810-mRNA-1 |
| chr1_3 | CDS | 39576804 | 39576943 | 39576804 | ID=Msa0117810-mRNA-1:cds;Parent=Msa0117810-mRNA-1 |
| chr1_3 | CDS | 39575988 | 39576541 | 39575988 | ID=Msa0117810-mRNA-1:cds;Parent=Msa0117810-mRNA-1 |
| chr1_3 | three_prime_UTR | 39575762 | 39575987 | 39575762 | ID=Msa0117810-mRNA-1:three_prime_utr;Parent=Msa0117810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
