Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117870 | KEH41692.1 | 88.889 | 99 | 11 | 0 | 5 | 103 | 1 | 99 | 1.12e-59 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117870 | sp|Q0WVU3|PHL5_ARATH | 65.854 | 82 | 27 | 1 | 23 | 103 | 193 | 274 | 3.81e-31 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117870 | A0A072VIP1 | 88.889 | 99 | 11 | 0 | 5 | 103 | 1 | 99 | 5.33e-60 | 188 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117870 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117870 | MtrunA17_Chr1g0175081 | 84.783 | 92 | 14 | 0 | 1 | 92 | 1 | 92 | 4.98e-54 | 164 |
| Msa0117870 | MtrunA17_Chr1g0175091 | 77.451 | 102 | 23 | 0 | 2 | 103 | 238 | 339 | 2.09e-47 | 156 |
| Msa0117870 | MtrunA17_Chr7g0258551 | 69.318 | 88 | 26 | 1 | 17 | 103 | 207 | 294 | 1.05e-34 | 122 |
| Msa0117870 | MtrunA17_Chr7g0261911 | 48.936 | 94 | 46 | 2 | 12 | 103 | 252 | 345 | 3.84e-27 | 103 |
| Msa0117870 | MtrunA17_Chr1g0190301 | 56.790 | 81 | 34 | 1 | 12 | 91 | 164 | 244 | 1.03e-25 | 98.6 |
| Msa0117870 | MtrunA17_Chr7g0274471 | 54.878 | 82 | 35 | 2 | 24 | 103 | 220 | 301 | 6.39e-24 | 94.4 |
| Msa0117870 | MtrunA17_Chr7g0254981 | 47.436 | 78 | 37 | 2 | 24 | 97 | 52 | 129 | 1.19e-20 | 83.6 |
| Msa0117870 | MtrunA17_Chr6g0461641 | 60.000 | 55 | 22 | 0 | 24 | 78 | 44 | 98 | 4.95e-20 | 83.2 |
| Msa0117870 | MtrunA17_Chr2g0321461 | 46.835 | 79 | 39 | 1 | 5 | 80 | 25 | 103 | 9.20e-20 | 82.4 |
| Msa0117870 | MtrunA17_Chr5g0417521 | 54.545 | 55 | 25 | 0 | 24 | 78 | 17 | 71 | 3.82e-19 | 80.5 |
| Msa0117870 | MtrunA17_Chr2g0291021 | 50.746 | 67 | 33 | 0 | 24 | 90 | 51 | 117 | 4.08e-19 | 80.1 |
| Msa0117870 | MtrunA17_Chr7g0242521 | 52.778 | 72 | 31 | 1 | 24 | 92 | 15 | 86 | 8.15e-18 | 75.5 |
| Msa0117870 | MtrunA17_Chr2g0290991 | 46.154 | 78 | 41 | 1 | 1 | 78 | 19 | 95 | 8.77e-18 | 76.3 |
| Msa0117870 | MtrunA17_Chr2g0320231 | 45.238 | 84 | 45 | 1 | 24 | 107 | 99 | 181 | 1.98e-17 | 75.9 |
| Msa0117870 | MtrunA17_Chr5g0409731 | 51.786 | 56 | 27 | 0 | 24 | 79 | 27 | 82 | 4.65e-17 | 74.3 |
| Msa0117870 | MtrunA17_Chr8g0379121 | 56.364 | 55 | 24 | 0 | 24 | 78 | 113 | 167 | 1.74e-16 | 73.6 |
| Msa0117870 | MtrunA17_Chr4g0042451 | 50.909 | 55 | 27 | 0 | 24 | 78 | 19 | 73 | 2.80e-16 | 72.4 |
| Msa0117870 | MtrunA17_Chr1g0197171 | 54.545 | 55 | 25 | 0 | 24 | 78 | 46 | 100 | 6.30e-16 | 71.2 |
| Msa0117870 | MtrunA17_Chr1g0175071 | 52.239 | 67 | 32 | 0 | 24 | 90 | 179 | 245 | 1.53e-15 | 70.5 |
| Msa0117870 | MtrunA17_Chr2g0288601 | 50.820 | 61 | 30 | 0 | 12 | 72 | 61 | 121 | 2.08e-15 | 67.0 |
| Msa0117870 | MtrunA17_Chr3g0095611 | 50.847 | 59 | 29 | 0 | 20 | 78 | 17 | 75 | 2.48e-15 | 68.6 |
| Msa0117870 | MtrunA17_Chr7g0243081 | 42.000 | 100 | 53 | 2 | 1 | 96 | 46 | 144 | 3.88e-15 | 69.3 |
| Msa0117870 | MtrunA17_Chr1g0162931 | 45.333 | 75 | 34 | 1 | 24 | 98 | 20 | 87 | 4.48e-15 | 68.6 |
| Msa0117870 | MtrunA17_Chr6g0479431 | 50.820 | 61 | 30 | 0 | 24 | 84 | 204 | 264 | 5.35e-15 | 68.9 |
| Msa0117870 | MtrunA17_Chr7g0258531 | 52.381 | 63 | 30 | 0 | 14 | 76 | 205 | 267 | 6.34e-15 | 68.9 |
| Msa0117870 | MtrunA17_Chr8g0356501 | 50.909 | 55 | 27 | 0 | 24 | 78 | 39 | 93 | 7.14e-15 | 68.6 |
| Msa0117870 | MtrunA17_Chr8g0366281 | 42.045 | 88 | 43 | 2 | 24 | 103 | 175 | 262 | 1.37e-14 | 67.8 |
| Msa0117870 | MtrunA17_Chr4g0062921 | 47.297 | 74 | 35 | 1 | 2 | 75 | 219 | 288 | 1.38e-14 | 68.2 |
| Msa0117870 | MtrunA17_Chr1g0210911 | 44.872 | 78 | 43 | 0 | 1 | 78 | 1 | 78 | 1.96e-14 | 67.4 |
| Msa0117870 | MtrunA17_Chr3g0109981 | 50.820 | 61 | 30 | 0 | 24 | 84 | 276 | 336 | 2.67e-14 | 67.4 |
| Msa0117870 | MtrunA17_Chr4g0045361 | 51.786 | 56 | 27 | 0 | 20 | 75 | 272 | 327 | 3.74e-14 | 66.6 |
| Msa0117870 | MtrunA17_Chr2g0310011 | 50.909 | 55 | 27 | 0 | 24 | 78 | 37 | 91 | 5.52e-14 | 66.2 |
| Msa0117870 | MtrunA17_Chr2g0304841 | 55.769 | 52 | 22 | 1 | 24 | 75 | 215 | 265 | 3.27e-13 | 64.3 |
| Msa0117870 | MtrunA17_Chr2g0283951 | 50.847 | 59 | 25 | 1 | 24 | 78 | 91 | 149 | 3.59e-13 | 63.9 |
| Msa0117870 | MtrunA17_Chr5g0410741 | 52.727 | 55 | 26 | 0 | 24 | 78 | 221 | 275 | 3.92e-13 | 63.9 |
| Msa0117870 | MtrunA17_Chr1g0154261 | 43.243 | 74 | 42 | 0 | 24 | 97 | 128 | 201 | 7.31e-13 | 62.8 |
| Msa0117870 | MtrunA17_Chr7g0255711 | 45.588 | 68 | 36 | 1 | 8 | 75 | 77 | 143 | 1.33e-12 | 62.0 |
| Msa0117870 | MtrunA17_Chr1g0198601 | 50.000 | 52 | 26 | 0 | 24 | 75 | 213 | 264 | 3.80e-12 | 61.2 |
| Msa0117870 | MtrunA17_Chr4g0031961 | 46.032 | 63 | 33 | 1 | 13 | 75 | 122 | 183 | 8.33e-12 | 60.1 |
| Msa0117870 | MtrunA17_Chr4g0009901 | 48.077 | 52 | 26 | 1 | 24 | 75 | 170 | 220 | 1.34e-11 | 59.3 |
| Msa0117870 | MtrunA17_Chr5g0422621 | 48.077 | 52 | 27 | 0 | 24 | 75 | 200 | 251 | 1.52e-11 | 59.3 |
| Msa0117870 | MtrunA17_Chr4g0009851 | 48.077 | 52 | 26 | 1 | 24 | 75 | 171 | 221 | 1.68e-11 | 58.9 |
| Msa0117870 | MtrunA17_Chr4g0054981 | 46.774 | 62 | 32 | 1 | 24 | 85 | 312 | 372 | 1.72e-11 | 59.3 |
| Msa0117870 | MtrunA17_Chr5g0400241 | 50.909 | 55 | 26 | 1 | 24 | 78 | 313 | 366 | 2.69e-11 | 58.9 |
| Msa0117870 | MtrunA17_Chr4g0040481 | 44.643 | 56 | 30 | 1 | 23 | 78 | 159 | 213 | 5.71e-11 | 57.8 |
| Msa0117870 | MtrunA17_Chr5g0402631 | 50.000 | 56 | 28 | 0 | 20 | 75 | 212 | 267 | 6.41e-11 | 57.4 |
| Msa0117870 | MtrunA17_Chr1g0161431 | 46.552 | 58 | 30 | 1 | 18 | 75 | 196 | 252 | 7.22e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117870 | AT5G06800.1 | 65.854 | 82 | 27 | 1 | 23 | 103 | 193 | 274 | 3.87e-32 | 115 |
| Msa0117870 | AT5G06800.3 | 76.562 | 64 | 15 | 0 | 23 | 86 | 193 | 256 | 1.03e-30 | 110 |
| Msa0117870 | AT5G06800.2 | 62.069 | 87 | 27 | 2 | 23 | 103 | 193 | 279 | 8.81e-30 | 109 |
| Msa0117870 | AT4G28610.1 | 51.020 | 98 | 41 | 3 | 12 | 102 | 211 | 308 | 1.90e-25 | 98.6 |
| Msa0117870 | AT5G29000.1 | 48.148 | 108 | 50 | 4 | 1 | 103 | 168 | 274 | 2.54e-25 | 97.8 |
| Msa0117870 | AT5G29000.3 | 48.148 | 108 | 50 | 4 | 1 | 103 | 168 | 274 | 2.54e-25 | 97.8 |
| Msa0117870 | AT5G29000.2 | 50.526 | 95 | 42 | 3 | 14 | 103 | 223 | 317 | 3.47e-25 | 97.8 |
| Msa0117870 | AT5G29000.4 | 50.000 | 88 | 42 | 1 | 14 | 99 | 223 | 310 | 2.67e-24 | 94.4 |
| Msa0117870 | AT3G04450.3 | 59.091 | 66 | 27 | 0 | 17 | 82 | 233 | 298 | 5.51e-24 | 93.6 |
| Msa0117870 | AT3G04450.4 | 59.091 | 66 | 27 | 0 | 17 | 82 | 193 | 258 | 6.25e-24 | 94.4 |
| Msa0117870 | AT3G04450.2 | 59.091 | 66 | 27 | 0 | 17 | 82 | 193 | 258 | 6.25e-24 | 94.4 |
| Msa0117870 | AT3G04450.1 | 59.091 | 66 | 27 | 0 | 17 | 82 | 233 | 298 | 8.78e-24 | 94.4 |
| Msa0117870 | AT2G20400.2 | 55.696 | 79 | 33 | 2 | 24 | 100 | 233 | 311 | 2.15e-22 | 90.1 |
| Msa0117870 | AT2G20400.1 | 56.410 | 78 | 33 | 1 | 24 | 100 | 233 | 310 | 2.44e-22 | 90.1 |
| Msa0117870 | AT3G13040.3 | 54.545 | 77 | 32 | 1 | 17 | 93 | 236 | 309 | 3.63e-21 | 87.0 |
| Msa0117870 | AT3G13040.1 | 54.545 | 77 | 32 | 1 | 17 | 93 | 236 | 309 | 3.63e-21 | 87.0 |
| Msa0117870 | AT3G13040.2 | 54.545 | 77 | 32 | 1 | 17 | 93 | 236 | 309 | 3.63e-21 | 87.0 |
| Msa0117870 | AT2G01060.1 | 47.436 | 78 | 38 | 1 | 5 | 82 | 1 | 75 | 4.25e-20 | 82.8 |
| Msa0117870 | AT3G04030.1 | 57.895 | 57 | 24 | 0 | 24 | 80 | 47 | 103 | 1.29e-19 | 82.4 |
| Msa0117870 | AT3G04030.3 | 57.895 | 57 | 24 | 0 | 24 | 80 | 47 | 103 | 1.33e-19 | 82.4 |
| Msa0117870 | AT5G18240.2 | 57.895 | 57 | 24 | 0 | 24 | 80 | 47 | 103 | 2.28e-19 | 81.6 |
| Msa0117870 | AT5G18240.3 | 57.895 | 57 | 24 | 0 | 24 | 80 | 47 | 103 | 2.28e-19 | 81.6 |
| Msa0117870 | AT5G18240.5 | 57.895 | 57 | 24 | 0 | 24 | 80 | 47 | 103 | 2.30e-19 | 81.6 |
| Msa0117870 | AT5G18240.1 | 57.895 | 57 | 24 | 0 | 24 | 80 | 47 | 103 | 2.34e-19 | 81.6 |
| Msa0117870 | AT5G18240.4 | 57.895 | 57 | 24 | 0 | 24 | 80 | 47 | 103 | 2.34e-19 | 81.6 |
| Msa0117870 | AT5G45580.1 | 47.619 | 84 | 32 | 3 | 24 | 100 | 9 | 87 | 6.94e-19 | 79.0 |
| Msa0117870 | AT5G45580.2 | 47.619 | 84 | 32 | 3 | 24 | 100 | 25 | 103 | 7.95e-19 | 79.3 |
| Msa0117870 | AT1G69580.1 | 56.364 | 55 | 24 | 0 | 24 | 78 | 36 | 90 | 3.75e-17 | 75.1 |
| Msa0117870 | AT1G69580.2 | 56.364 | 55 | 24 | 0 | 24 | 78 | 36 | 90 | 3.92e-17 | 75.1 |
| Msa0117870 | AT3G04030.2 | 54.386 | 57 | 25 | 1 | 24 | 80 | 47 | 102 | 1.11e-16 | 74.3 |
| Msa0117870 | AT2G38300.1 | 54.545 | 55 | 25 | 0 | 24 | 78 | 56 | 110 | 9.59e-16 | 71.2 |
| Msa0117870 | AT2G40260.1 | 50.000 | 64 | 31 | 1 | 24 | 87 | 84 | 146 | 1.06e-15 | 71.6 |
| Msa0117870 | AT3G12730.1 | 52.727 | 55 | 26 | 0 | 24 | 78 | 25 | 79 | 1.10e-15 | 70.1 |
| Msa0117870 | AT4G04605.1 | 45.455 | 77 | 41 | 1 | 11 | 87 | 3 | 78 | 1.49e-15 | 69.7 |
| Msa0117870 | AT2G42660.1 | 50.769 | 65 | 30 | 1 | 20 | 84 | 48 | 110 | 1.56e-15 | 70.1 |
| Msa0117870 | AT2G03500.1 | 49.206 | 63 | 32 | 0 | 13 | 75 | 224 | 286 | 8.95e-15 | 68.9 |
| Msa0117870 | AT4G13640.2 | 49.091 | 55 | 28 | 0 | 24 | 78 | 39 | 93 | 9.30e-15 | 68.6 |
| Msa0117870 | AT3G24120.1 | 49.091 | 55 | 28 | 0 | 24 | 78 | 43 | 97 | 9.49e-15 | 68.2 |
| Msa0117870 | AT3G24120.2 | 49.091 | 55 | 28 | 0 | 24 | 78 | 43 | 97 | 9.51e-15 | 68.6 |
| Msa0117870 | AT4G13640.1 | 49.091 | 55 | 28 | 0 | 24 | 78 | 39 | 93 | 9.57e-15 | 68.2 |
| Msa0117870 | AT4G04580.1 | 45.588 | 68 | 37 | 0 | 11 | 78 | 3 | 70 | 1.40e-14 | 65.9 |
| Msa0117870 | AT1G14600.1 | 52.727 | 55 | 26 | 0 | 24 | 78 | 25 | 79 | 2.05e-14 | 67.0 |
| Msa0117870 | AT2G02060.2 | 55.769 | 52 | 23 | 0 | 24 | 75 | 31 | 82 | 3.54e-14 | 66.2 |
| Msa0117870 | AT2G02060.1 | 55.769 | 52 | 23 | 0 | 24 | 75 | 31 | 82 | 3.54e-14 | 66.2 |
| Msa0117870 | AT5G42630.2 | 47.826 | 69 | 34 | 1 | 24 | 90 | 107 | 175 | 6.09e-14 | 65.5 |
| Msa0117870 | AT5G42630.1 | 47.826 | 69 | 34 | 1 | 24 | 90 | 107 | 175 | 7.00e-14 | 65.9 |
| Msa0117870 | AT5G16560.1 | 42.391 | 92 | 48 | 1 | 12 | 98 | 209 | 300 | 9.79e-14 | 65.9 |
| Msa0117870 | AT4G17695.1 | 47.059 | 68 | 34 | 1 | 24 | 89 | 166 | 233 | 1.22e-13 | 65.5 |
| Msa0117870 | AT2G06020.1 | 34.343 | 99 | 52 | 2 | 24 | 109 | 88 | 186 | 2.04e-13 | 64.7 |
| Msa0117870 | AT1G79430.2 | 50.909 | 55 | 27 | 0 | 24 | 78 | 36 | 90 | 2.08e-13 | 65.1 |
| Msa0117870 | AT1G32240.2 | 52.727 | 55 | 26 | 0 | 24 | 78 | 215 | 269 | 3.76e-13 | 64.3 |
| Msa0117870 | AT1G32240.1 | 52.727 | 55 | 26 | 0 | 24 | 78 | 215 | 269 | 4.42e-13 | 64.3 |
| Msa0117870 | AT5G59570.2 | 42.466 | 73 | 41 | 1 | 3 | 75 | 122 | 193 | 1.21e-12 | 62.8 |
| Msa0117870 | AT5G59570.1 | 42.466 | 73 | 41 | 1 | 3 | 75 | 122 | 193 | 1.21e-12 | 62.8 |
| Msa0117870 | AT1G25550.1 | 51.923 | 52 | 25 | 0 | 24 | 75 | 211 | 262 | 1.46e-12 | 62.4 |
| Msa0117870 | AT5G05090.1 | 53.846 | 52 | 23 | 1 | 24 | 75 | 83 | 133 | 2.59e-12 | 61.6 |
| Msa0117870 | AT3G16857.1 | 55.769 | 52 | 22 | 1 | 24 | 75 | 239 | 289 | 5.02e-12 | 61.2 |
| Msa0117870 | AT3G46640.2 | 51.923 | 52 | 24 | 1 | 24 | 75 | 146 | 196 | 7.33e-12 | 60.5 |
| Msa0117870 | AT3G46640.1 | 51.923 | 52 | 24 | 1 | 24 | 75 | 146 | 196 | 7.33e-12 | 60.5 |
| Msa0117870 | AT3G46640.3 | 51.923 | 52 | 24 | 1 | 24 | 75 | 146 | 196 | 1.03e-11 | 60.1 |
| Msa0117870 | AT2G40970.1 | 51.923 | 52 | 24 | 1 | 24 | 75 | 107 | 157 | 1.32e-11 | 59.3 |
| Msa0117870 | AT1G68670.1 | 50.000 | 52 | 26 | 0 | 24 | 75 | 217 | 268 | 2.00e-11 | 59.3 |
| Msa0117870 | AT2G01760.3 | 40.230 | 87 | 48 | 3 | 20 | 103 | 133 | 218 | 3.14e-11 | 58.9 |
| Msa0117870 | AT4G37180.2 | 55.769 | 52 | 23 | 0 | 24 | 75 | 219 | 270 | 3.20e-11 | 58.9 |
| Msa0117870 | AT4G37180.1 | 55.769 | 52 | 23 | 0 | 24 | 75 | 212 | 263 | 4.38e-11 | 58.5 |
| Msa0117870 | AT5G58080.1 | 42.105 | 76 | 41 | 2 | 17 | 92 | 189 | 261 | 5.05e-11 | 58.5 |
| Msa0117870 | AT2G01760.2 | 40.230 | 87 | 48 | 3 | 20 | 103 | 226 | 311 | 5.21e-11 | 58.2 |
| Msa0117870 | AT3G62670.1 | 48.276 | 58 | 26 | 1 | 24 | 77 | 213 | 270 | 5.46e-11 | 58.2 |
| Msa0117870 | AT2G20570.1 | 44.000 | 75 | 30 | 2 | 15 | 78 | 135 | 208 | 7.65e-11 | 57.8 |
| Msa0117870 | AT2G01760.1 | 40.230 | 87 | 48 | 3 | 20 | 103 | 198 | 283 | 9.45e-11 | 57.4 |
Find 14 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACAATGTCAACAACTTC+TGG | 0.277598 | 1_3:-39892436 | Msa0117870:CDS |
| ATCAGCATTAATATAGCTTT+CGG | 0.341029 | 1_3:+39891996 | None:intergenic |
| ATACATTGCTGAACCAGCTC+AGG | 0.417044 | 1_3:-39891910 | Msa0117870:CDS |
| ACAAACTTCTCATGAAGATC+AGG | 0.435376 | 1_3:+39892358 | None:intergenic |
| ACTGCTGATGTATTAGTAGC+AGG | 0.461243 | 1_3:+39892409 | None:intergenic |
| CTAACAAATTTACCCTGAGC+TGG | 0.503929 | 1_3:+39891897 | None:intergenic |
| GTTGAGTGTGTGAATCGCCT+TGG | 0.507842 | 1_3:-39892337 | Msa0117870:CDS |
| GAAAGCTATATTAATGCTGA+TGG | 0.529517 | 1_3:-39891994 | Msa0117870:CDS |
| CTGCTGATGTATTAGTAGCA+GGG | 0.536658 | 1_3:+39892410 | None:intergenic |
| GAGTGTGTGAATCGCCTTGG+CGG | 0.593858 | 1_3:-39892334 | Msa0117870:CDS |
| TACATTGCTGAACCAGCTCA+GGG | 0.606294 | 1_3:-39891909 | Msa0117870:intron |
| ACGTACTCTCGGCACCGCCA+AGG | 0.624771 | 1_3:+39892320 | None:intergenic |
| CAAGTAATACAAGAATAACA+TGG | 0.643229 | 1_3:-39892384 | Msa0117870:CDS |
| TTAATGCTGATGGAATCAGA+TGG | 0.680378 | 1_3:-39891984 | Msa0117870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTACATTTTTTTGT+GGG | + | chr1_3:39891439-39891458 | None:intergenic | 10.0% |
| !!! | TAAATATTTACATTTTTTTG+TGG | + | chr1_3:39891440-39891459 | None:intergenic | 10.0% |
| !!! | AAATATTTACATTTTTTTGT+GGG | + | chr1_3:39891439-39891458 | None:intergenic | 10.0% |
| !!! | TAAATATTTACATTTTTTTG+TGG | + | chr1_3:39891440-39891459 | None:intergenic | 10.0% |
| !! | ATAATATAAAGTACATTACT+TGG | - | chr1_3:39891644-39891663 | Msa0117870:intron | 15.0% |
| !! | ATAATATAAAGTACATTACT+TGG | - | chr1_3:39891644-39891663 | Msa0117870:intron | 15.0% |
| ! | CAAGTAATACAAGAATAACA+TGG | - | chr1_3:39891111-39891130 | Msa0117870:intron | 25.0% |
| !!! | TTGACGCATGTTTATTTTAT+AGG | + | chr1_3:39891244-39891263 | None:intergenic | 25.0% |
| ! | ATCAGCATTAATATAGCTTT+CGG | + | chr1_3:39891502-39891521 | None:intergenic | 25.0% |
| !!! | TCTTCAAATGACTTTTAACT+TGG | + | chr1_3:39891549-39891568 | None:intergenic | 25.0% |
| ! | AGCATTCATGTTATAAATTG+TGG | - | chr1_3:39891681-39891700 | Msa0117870:intron | 25.0% |
| ! | ACAAGTTGTTTATCTAAACA+GGG | + | chr1_3:39891762-39891781 | None:intergenic | 25.0% |
| ! | TACAAGTTGTTTATCTAAAC+AGG | + | chr1_3:39891763-39891782 | None:intergenic | 25.0% |
| !! | AATACAATTTGACTTTGTCT+TGG | + | chr1_3:39891813-39891832 | None:intergenic | 25.0% |
| ! | GTCAACAAAAAAAACTATGA+AGG | + | chr1_3:39891990-39892009 | None:intergenic | 25.0% |
| ! | TTCTATAGCTAAAACTGAAA+GGG | - | chr1_3:39892020-39892039 | Msa0117870:intron | 25.0% |
| ! | CATTTCAAACGAATTCAATT+AGG | + | chr1_3:39892060-39892079 | None:intergenic | 25.0% |
| !! | GAATTCGTTTGAAATGTAAA+CGG | - | chr1_3:39892064-39892083 | Msa0117870:intron | 25.0% |
| ! | AACGGAGTTGTAATAAAAAA+AGG | - | chr1_3:39892082-39892101 | Msa0117870:intron | 25.0% |
| ! | TTAGACTTTAGATCCTTTAA+AGG | + | chr1_3:39892350-39892369 | None:intergenic | 25.0% |
| ! | CAAGTAATACAAGAATAACA+TGG | - | chr1_3:39891111-39891130 | Msa0117870:intron | 25.0% |
| !!! | TTGACGCATGTTTATTTTAT+AGG | + | chr1_3:39891244-39891263 | None:intergenic | 25.0% |
| ! | ATCAGCATTAATATAGCTTT+CGG | + | chr1_3:39891502-39891521 | None:intergenic | 25.0% |
| !!! | TCTTCAAATGACTTTTAACT+TGG | + | chr1_3:39891549-39891568 | None:intergenic | 25.0% |
| ! | AGCATTCATGTTATAAATTG+TGG | - | chr1_3:39891681-39891700 | Msa0117870:intron | 25.0% |
| ! | ACAAGTTGTTTATCTAAACA+GGG | + | chr1_3:39891762-39891781 | None:intergenic | 25.0% |
| ! | TACAAGTTGTTTATCTAAAC+AGG | + | chr1_3:39891763-39891782 | None:intergenic | 25.0% |
| !! | AATACAATTTGACTTTGTCT+TGG | + | chr1_3:39891813-39891832 | None:intergenic | 25.0% |
| ! | GTCAACAAAAAAAACTATGA+AGG | + | chr1_3:39891990-39892009 | None:intergenic | 25.0% |
| ! | TTCTATAGCTAAAACTGAAA+GGG | - | chr1_3:39892020-39892039 | Msa0117870:intron | 25.0% |
| ! | CATTTCAAACGAATTCAATT+AGG | + | chr1_3:39892060-39892079 | None:intergenic | 25.0% |
| !! | GAATTCGTTTGAAATGTAAA+CGG | - | chr1_3:39892064-39892083 | Msa0117870:intron | 25.0% |
| ! | AACGGAGTTGTAATAAAAAA+AGG | - | chr1_3:39892082-39892101 | Msa0117870:intron | 25.0% |
| ! | TTAGACTTTAGATCCTTTAA+AGG | + | chr1_3:39892350-39892369 | None:intergenic | 25.0% |
| TAAATGTGTCCGTTTACTTT+CGG | - | chr1_3:39891197-39891216 | Msa0117870:intron | 30.0% | |
| AAAATGATGCTCGAAAGTAA+AGG | - | chr1_3:39891406-39891425 | Msa0117870:intron | 30.0% | |
| AAATGATGCTCGAAAGTAAA+GGG | - | chr1_3:39891407-39891426 | Msa0117870:intron | 30.0% | |
| GAAAGCTATATTAATGCTGA+TGG | - | chr1_3:39891501-39891520 | Msa0117870:intron | 30.0% | |
| !!! | TTCAGTTTTAGCTATAGAAG+TGG | + | chr1_3:39892019-39892038 | None:intergenic | 30.0% |
| CTTCTATAGCTAAAACTGAA+AGG | - | chr1_3:39892019-39892038 | Msa0117870:intron | 30.0% | |
| ! | TAAAACTGAAAGGGTATGAT+AGG | - | chr1_3:39892029-39892048 | Msa0117870:intron | 30.0% |
| CTTCTTGTACCAATATTTGT+GGG | + | chr1_3:39892212-39892231 | None:intergenic | 30.0% | |
| TCTTCTTGTACCAATATTTG+TGG | + | chr1_3:39892213-39892232 | None:intergenic | 30.0% | |
| ! | ATCGACTTTACTTCCTTTAA+AGG | - | chr1_3:39892334-39892353 | Msa0117870:CDS | 30.0% |
| TAAATGTGTCCGTTTACTTT+CGG | - | chr1_3:39891197-39891216 | Msa0117870:intron | 30.0% | |
| AAAATGATGCTCGAAAGTAA+AGG | - | chr1_3:39891406-39891425 | Msa0117870:intron | 30.0% | |
| AAATGATGCTCGAAAGTAAA+GGG | - | chr1_3:39891407-39891426 | Msa0117870:intron | 30.0% | |
| GAAAGCTATATTAATGCTGA+TGG | - | chr1_3:39891501-39891520 | Msa0117870:intron | 30.0% | |
| !!! | TTCAGTTTTAGCTATAGAAG+TGG | + | chr1_3:39892019-39892038 | None:intergenic | 30.0% |
| CTTCTATAGCTAAAACTGAA+AGG | - | chr1_3:39892019-39892038 | Msa0117870:intron | 30.0% | |
| ! | TAAAACTGAAAGGGTATGAT+AGG | - | chr1_3:39892029-39892048 | Msa0117870:intron | 30.0% |
| CTTCTTGTACCAATATTTGT+GGG | + | chr1_3:39892212-39892231 | None:intergenic | 30.0% | |
| TCTTCTTGTACCAATATTTG+TGG | + | chr1_3:39892213-39892232 | None:intergenic | 30.0% | |
| ! | ATCGACTTTACTTCCTTTAA+AGG | - | chr1_3:39892334-39892353 | Msa0117870:CDS | 30.0% |
| TCAACAATGTCAACAACTTC+TGG | - | chr1_3:39891059-39891078 | Msa0117870:CDS | 35.0% | |
| ACAAACTTCTCATGAAGATC+AGG | + | chr1_3:39891140-39891159 | None:intergenic | 35.0% | |
| CAGAAAACACCGAAAGTAAA+CGG | + | chr1_3:39891209-39891228 | None:intergenic | 35.0% | |
| !!! | TTACATTTTTTTGTGGGCTG+TGG | + | chr1_3:39891433-39891452 | None:intergenic | 35.0% |
| TTAATGCTGATGGAATCAGA+TGG | - | chr1_3:39891511-39891530 | Msa0117870:intron | 35.0% | |
| ! | ACAGGGTTAGCATAGTTTAT+AGG | + | chr1_3:39891745-39891764 | None:intergenic | 35.0% |
| TTGTCTTGGACATAAGTAGA+TGG | + | chr1_3:39891799-39891818 | None:intergenic | 35.0% | |
| AAGCTATCAGATAGAGCTTA+TGG | - | chr1_3:39891851-39891870 | Msa0117870:intron | 35.0% | |
| TGACACAATTACTAGTGAGA+CGG | + | chr1_3:39891935-39891954 | None:intergenic | 35.0% | |
| !!! | ACTATGAAGGCTGTTTTGAT+CGG | + | chr1_3:39891977-39891996 | None:intergenic | 35.0% |
| TTAGCTATAGAAGTGGAAGT+AGG | + | chr1_3:39892012-39892031 | None:intergenic | 35.0% | |
| !! | CCATAGCTTTGGCTATAAAT+TGG | + | chr1_3:39892184-39892203 | None:intergenic | 35.0% |
| CCAATTTATAGCCAAAGCTA+TGG | - | chr1_3:39892181-39892200 | Msa0117870:intron | 35.0% | |
| TTTCCGTTGAAAACCAACAT+GGG | + | chr1_3:39892298-39892317 | None:intergenic | 35.0% | |
| ATTTCCGTTGAAAACCAACA+TGG | + | chr1_3:39892299-39892318 | None:intergenic | 35.0% | |
| ACAAACTGTTATCATGTTGC+AGG | - | chr1_3:39892369-39892388 | Msa0117870:CDS | 35.0% | |
| CAAACTGTTATCATGTTGCA+GGG | - | chr1_3:39892370-39892389 | Msa0117870:CDS | 35.0% | |
| AAACTGTTATCATGTTGCAG+GGG | - | chr1_3:39892371-39892390 | Msa0117870:CDS | 35.0% | |
| TCAACAATGTCAACAACTTC+TGG | - | chr1_3:39891059-39891078 | Msa0117870:CDS | 35.0% | |
| ACAAACTTCTCATGAAGATC+AGG | + | chr1_3:39891140-39891159 | None:intergenic | 35.0% | |
| CAGAAAACACCGAAAGTAAA+CGG | + | chr1_3:39891209-39891228 | None:intergenic | 35.0% | |
| !!! | TTACATTTTTTTGTGGGCTG+TGG | + | chr1_3:39891433-39891452 | None:intergenic | 35.0% |
| TTAATGCTGATGGAATCAGA+TGG | - | chr1_3:39891511-39891530 | Msa0117870:intron | 35.0% | |
| ! | ACAGGGTTAGCATAGTTTAT+AGG | + | chr1_3:39891745-39891764 | None:intergenic | 35.0% |
| TTGTCTTGGACATAAGTAGA+TGG | + | chr1_3:39891799-39891818 | None:intergenic | 35.0% | |
| AAGCTATCAGATAGAGCTTA+TGG | - | chr1_3:39891851-39891870 | Msa0117870:intron | 35.0% | |
| TGACACAATTACTAGTGAGA+CGG | + | chr1_3:39891935-39891954 | None:intergenic | 35.0% | |
| !!! | ACTATGAAGGCTGTTTTGAT+CGG | + | chr1_3:39891977-39891996 | None:intergenic | 35.0% |
| TTAGCTATAGAAGTGGAAGT+AGG | + | chr1_3:39892012-39892031 | None:intergenic | 35.0% | |
| !! | CCATAGCTTTGGCTATAAAT+TGG | + | chr1_3:39892184-39892203 | None:intergenic | 35.0% |
| CCAATTTATAGCCAAAGCTA+TGG | - | chr1_3:39892181-39892200 | Msa0117870:intron | 35.0% | |
| TTTCCGTTGAAAACCAACAT+GGG | + | chr1_3:39892298-39892317 | None:intergenic | 35.0% | |
| ATTTCCGTTGAAAACCAACA+TGG | + | chr1_3:39892299-39892318 | None:intergenic | 35.0% | |
| ACAAACTGTTATCATGTTGC+AGG | - | chr1_3:39892369-39892388 | Msa0117870:CDS | 35.0% | |
| CAAACTGTTATCATGTTGCA+GGG | - | chr1_3:39892370-39892389 | Msa0117870:CDS | 35.0% | |
| AAACTGTTATCATGTTGCAG+GGG | - | chr1_3:39892371-39892390 | Msa0117870:CDS | 35.0% | |
| CTGCTGATGTATTAGTAGCA+GGG | + | chr1_3:39891088-39891107 | None:intergenic | 40.0% | |
| ACTGCTGATGTATTAGTAGC+AGG | + | chr1_3:39891089-39891108 | None:intergenic | 40.0% | |
| TCTTGACTGCTTGATTGTAG+AGG | - | chr1_3:39891471-39891490 | Msa0117870:intron | 40.0% | |
| CTAACAAATTTACCCTGAGC+TGG | + | chr1_3:39891601-39891620 | None:intergenic | 40.0% | |
| GACATAGAGCTTAGAACACA+TGG | - | chr1_3:39891715-39891734 | Msa0117870:intron | 40.0% | |
| CAAGTTACCAATGCTTTGTC+CGG | - | chr1_3:39892129-39892148 | Msa0117870:intron | 40.0% | |
| AAGTTACCAATGCTTTGTCC+GGG | - | chr1_3:39892130-39892149 | Msa0117870:intron | 40.0% | |
| !! | ATGGACTAGCCCACAAATAT+TGG | - | chr1_3:39892200-39892219 | Msa0117870:intron | 40.0% |
| TTTCAACCTGAAACCTTGAG+AGG | - | chr1_3:39892233-39892252 | Msa0117870:intron | 40.0% | |
| !!! | CAACCCATGTTGGTTTTCAA+CGG | - | chr1_3:39892292-39892311 | Msa0117870:intron | 40.0% |
| CTGCTGATGTATTAGTAGCA+GGG | + | chr1_3:39891088-39891107 | None:intergenic | 40.0% | |
| ACTGCTGATGTATTAGTAGC+AGG | + | chr1_3:39891089-39891108 | None:intergenic | 40.0% | |
| TCTTGACTGCTTGATTGTAG+AGG | - | chr1_3:39891471-39891490 | Msa0117870:intron | 40.0% | |
| CTAACAAATTTACCCTGAGC+TGG | + | chr1_3:39891601-39891620 | None:intergenic | 40.0% | |
| GACATAGAGCTTAGAACACA+TGG | - | chr1_3:39891715-39891734 | Msa0117870:intron | 40.0% | |
| CAAGTTACCAATGCTTTGTC+CGG | - | chr1_3:39892129-39892148 | Msa0117870:intron | 40.0% | |
| AAGTTACCAATGCTTTGTCC+GGG | - | chr1_3:39892130-39892149 | Msa0117870:intron | 40.0% | |
| !! | ATGGACTAGCCCACAAATAT+TGG | - | chr1_3:39892200-39892219 | Msa0117870:intron | 40.0% |
| TTTCAACCTGAAACCTTGAG+AGG | - | chr1_3:39892233-39892252 | Msa0117870:intron | 40.0% | |
| !!! | CAACCCATGTTGGTTTTCAA+CGG | - | chr1_3:39892292-39892311 | Msa0117870:intron | 40.0% |
| CGGACACATTTACGTACTCT+CGG | + | chr1_3:39891189-39891208 | None:intergenic | 45.0% | |
| ATACATTGCTGAACCAGCTC+AGG | - | chr1_3:39891585-39891604 | Msa0117870:intron | 45.0% | |
| TACATTGCTGAACCAGCTCA+GGG | - | chr1_3:39891586-39891605 | Msa0117870:intron | 45.0% | |
| ACTAGTGAGACGGTTTGCAA+TGG | + | chr1_3:39891925-39891944 | None:intergenic | 45.0% | |
| AGTTACCAATGCTTTGTCCG+GGG | - | chr1_3:39892131-39892150 | Msa0117870:intron | 45.0% | |
| CTATAAATTGGCCCCCTTAG+TGG | + | chr1_3:39892172-39892191 | None:intergenic | 45.0% | |
| AGGGTGAAGACTTAGAACCT+TGG | + | chr1_3:39892267-39892286 | None:intergenic | 45.0% | |
| CGTTGAAAACCAACATGGGT+TGG | + | chr1_3:39892294-39892313 | None:intergenic | 45.0% | |
| CGGACACATTTACGTACTCT+CGG | + | chr1_3:39891189-39891208 | None:intergenic | 45.0% | |
| ATACATTGCTGAACCAGCTC+AGG | - | chr1_3:39891585-39891604 | Msa0117870:intron | 45.0% | |
| TACATTGCTGAACCAGCTCA+GGG | - | chr1_3:39891586-39891605 | Msa0117870:intron | 45.0% | |
| ACTAGTGAGACGGTTTGCAA+TGG | + | chr1_3:39891925-39891944 | None:intergenic | 45.0% | |
| AGTTACCAATGCTTTGTCCG+GGG | - | chr1_3:39892131-39892150 | Msa0117870:intron | 45.0% | |
| CTATAAATTGGCCCCCTTAG+TGG | + | chr1_3:39892172-39892191 | None:intergenic | 45.0% | |
| AGGGTGAAGACTTAGAACCT+TGG | + | chr1_3:39892267-39892286 | None:intergenic | 45.0% | |
| CGTTGAAAACCAACATGGGT+TGG | + | chr1_3:39892294-39892313 | None:intergenic | 45.0% | |
| GTTGAGTGTGTGAATCGCCT+TGG | - | chr1_3:39891158-39891177 | Msa0117870:intron | 50.0% | |
| GTTACCAATGCTTTGTCCGG+GGG | - | chr1_3:39892132-39892151 | Msa0117870:intron | 50.0% | |
| ACTAATCTCACCGGCCACTA+AGG | - | chr1_3:39892155-39892174 | Msa0117870:intron | 50.0% | |
| CTAATCTCACCGGCCACTAA+GGG | - | chr1_3:39892156-39892175 | Msa0117870:intron | 50.0% | |
| TAATCTCACCGGCCACTAAG+GGG | - | chr1_3:39892157-39892176 | Msa0117870:intron | 50.0% | |
| !! | TGTGGGCTAGTCCATAGCTT+TGG | + | chr1_3:39892195-39892214 | None:intergenic | 50.0% |
| TGTGCTCCTCTCAAGGTTTC+AGG | + | chr1_3:39892242-39892261 | None:intergenic | 50.0% | |
| !! | ACCAACATGGGTTGGCGTAA+GGG | + | chr1_3:39892286-39892305 | None:intergenic | 50.0% |
| !! | AACCAACATGGGTTGGCGTA+AGG | + | chr1_3:39892287-39892306 | None:intergenic | 50.0% |
| GTTGAGTGTGTGAATCGCCT+TGG | - | chr1_3:39891158-39891177 | Msa0117870:intron | 50.0% | |
| GTTACCAATGCTTTGTCCGG+GGG | - | chr1_3:39892132-39892151 | Msa0117870:intron | 50.0% | |
| ACTAATCTCACCGGCCACTA+AGG | - | chr1_3:39892155-39892174 | Msa0117870:intron | 50.0% | |
| CTAATCTCACCGGCCACTAA+GGG | - | chr1_3:39892156-39892175 | Msa0117870:intron | 50.0% | |
| TAATCTCACCGGCCACTAAG+GGG | - | chr1_3:39892157-39892176 | Msa0117870:intron | 50.0% | |
| !! | TGTGGGCTAGTCCATAGCTT+TGG | + | chr1_3:39892195-39892214 | None:intergenic | 50.0% |
| TGTGCTCCTCTCAAGGTTTC+AGG | + | chr1_3:39892242-39892261 | None:intergenic | 50.0% | |
| !! | ACCAACATGGGTTGGCGTAA+GGG | + | chr1_3:39892286-39892305 | None:intergenic | 50.0% |
| !! | AACCAACATGGGTTGGCGTA+AGG | + | chr1_3:39892287-39892306 | None:intergenic | 50.0% |
| GAGTGTGTGAATCGCCTTGG+CGG | - | chr1_3:39891161-39891180 | Msa0117870:intron | 55.0% | |
| TAGTCCCCCGGACAAAGCAT+TGG | + | chr1_3:39892139-39892158 | None:intergenic | 55.0% | |
| AATCTCACCGGCCACTAAGG+GGG | - | chr1_3:39892158-39892177 | Msa0117870:intron | 55.0% | |
| AAATTGGCCCCCTTAGTGGC+CGG | + | chr1_3:39892168-39892187 | None:intergenic | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | + | chr1_3:39892249-39892268 | None:intergenic | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | - | chr1_3:39892247-39892266 | Msa0117870:intron | 55.0% |
| ACCCTTACGCCAACCCATGT+TGG | - | chr1_3:39892282-39892301 | Msa0117870:intron | 55.0% | |
| GAGTGTGTGAATCGCCTTGG+CGG | - | chr1_3:39891161-39891180 | Msa0117870:intron | 55.0% | |
| TAGTCCCCCGGACAAAGCAT+TGG | + | chr1_3:39892139-39892158 | None:intergenic | 55.0% | |
| AATCTCACCGGCCACTAAGG+GGG | - | chr1_3:39892158-39892177 | Msa0117870:intron | 55.0% | |
| AAATTGGCCCCCTTAGTGGC+CGG | + | chr1_3:39892168-39892187 | None:intergenic | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | + | chr1_3:39892249-39892268 | None:intergenic | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | - | chr1_3:39892247-39892266 | Msa0117870:intron | 55.0% |
| ACCCTTACGCCAACCCATGT+TGG | - | chr1_3:39892282-39892301 | Msa0117870:intron | 55.0% | |
| GTCCGGGGGACTAATCTCAC+CGG | - | chr1_3:39892146-39892165 | Msa0117870:intron | 60.0% | |
| GTCCGGGGGACTAATCTCAC+CGG | - | chr1_3:39892146-39892165 | Msa0117870:intron | 60.0% | |
| ACGTACTCTCGGCACCGCCA+AGG | + | chr1_3:39891178-39891197 | None:intergenic | 65.0% | |
| ! | GGCCGGTGAGATTAGTCCCC+CGG | + | chr1_3:39892151-39892170 | None:intergenic | 65.0% |
| ACGTACTCTCGGCACCGCCA+AGG | + | chr1_3:39891178-39891197 | None:intergenic | 65.0% | |
| ! | GGCCGGTGAGATTAGTCCCC+CGG | + | chr1_3:39892151-39892170 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 39891053 | 39892464 | 39891053 | ID=Msa0117870;Name=Msa0117870 |
| chr1_3 | mRNA | 39891053 | 39892464 | 39891053 | ID=Msa0117870-mRNA-1;Parent=Msa0117870;Name=Msa0117870-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0|0|0.66|1|1|3|0|109 |
| chr1_3 | exon | 39892326 | 39892464 | 39892326 | ID=Msa0117870-mRNA-1:exon:12239;Parent=Msa0117870-mRNA-1 |
| chr1_3 | exon | 39891910 | 39892026 | 39891910 | ID=Msa0117870-mRNA-1:exon:12238;Parent=Msa0117870-mRNA-1 |
| chr1_3 | exon | 39891053 | 39891126 | 39891053 | ID=Msa0117870-mRNA-1:exon:12237;Parent=Msa0117870-mRNA-1 |
| chr1_3 | CDS | 39892326 | 39892464 | 39892326 | ID=Msa0117870-mRNA-1:cds;Parent=Msa0117870-mRNA-1 |
| chr1_3 | CDS | 39891910 | 39892026 | 39891910 | ID=Msa0117870-mRNA-1:cds;Parent=Msa0117870-mRNA-1 |
| chr1_3 | CDS | 39891053 | 39891126 | 39891053 | ID=Msa0117870-mRNA-1:cds;Parent=Msa0117870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
