AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0117880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117880 MtrunA17_Chr1g0175091 94.723 379 15 3 1 376 51 427 0.0 689
Msa0117880 MtrunA17_Chr7g0258551 60.929 366 116 8 17 369 20 371 2.24e-135 391
Msa0117880 MtrunA17_Chr7g0261911 51.648 182 79 3 200 372 252 433 2.46e-56 191
Msa0117880 MtrunA17_Chr1g0190301 54.878 164 60 4 205 354 166 329 3.14e-50 173
Msa0117880 MtrunA17_Chr2g0291021 50.296 169 66 3 210 360 49 217 3.26e-50 171
Msa0117880 MtrunA17_Chr7g0254981 51.282 156 63 4 201 343 33 188 3.21e-49 167
Msa0117880 MtrunA17_Chr7g0274471 49.727 183 64 4 209 363 217 399 2.28e-48 169
Msa0117880 MtrunA17_Chr1g0175081 72.222 90 25 0 192 281 4 93 4.54e-40 137
Msa0117880 MtrunA17_Chr6g0461641 45.562 169 66 3 206 352 38 202 3.74e-39 144
Msa0117880 MtrunA17_Chr2g0321461 44.086 186 73 5 188 351 27 203 2.35e-38 141
Msa0117880 MtrunA17_Chr1g0175071 43.350 203 107 4 146 346 118 314 2.15e-37 137
Msa0117880 MtrunA17_Chr7g0242521 50.365 137 63 3 198 330 2 137 3.15e-36 132
Msa0117880 MtrunA17_Chr5g0409731 45.455 143 64 2 210 338 25 167 1.11e-34 129
Msa0117880 MtrunA17_Chr4g0042451 42.282 149 71 3 206 340 13 160 2.90e-33 126
Msa0117880 MtrunA17_Chr5g0417521 39.073 151 78 1 206 342 11 161 3.12e-33 127
Msa0117880 MtrunA17_Chr2g0290991 40.373 161 73 4 191 333 21 176 3.19e-31 120
Msa0117880 MtrunA17_Chr8g0356501 42.657 143 71 3 206 340 33 172 1.63e-30 119
Msa0117880 MtrunA17_Chr2g0310011 45.802 131 66 1 206 331 31 161 2.86e-30 119
Msa0117880 MtrunA17_Chr7g0258531 35.470 234 116 7 114 340 139 344 2.12e-28 114
Msa0117880 MtrunA17_Chr1g0197171 40.288 139 64 3 210 333 44 178 1.39e-26 107
Msa0117880 MtrunA17_Chr6g0479431 57.377 61 26 0 212 272 204 264 8.64e-17 80.9
Msa0117880 MtrunA17_Chr7g0243081 52.055 73 34 1 212 284 73 144 1.54e-16 80.1
Msa0117880 MtrunA17_Chr2g0320231 58.209 67 27 1 212 278 99 164 1.96e-16 80.1
Msa0117880 MtrunA17_Chr3g0109981 57.377 61 26 0 212 272 276 336 2.69e-16 80.1
Msa0117880 MtrunA17_Chr8g0379121 58.065 62 25 1 212 273 113 173 4.64e-16 79.3
Msa0117880 MtrunA17_Chr2g0288601 55.738 61 27 0 200 260 61 121 5.16e-16 73.9
Msa0117880 MtrunA17_Chr8g0366281 38.136 118 64 2 212 329 175 283 1.12e-15 77.4
Msa0117880 MtrunA17_Chr5g0410741 60.000 55 22 0 212 266 221 275 1.89e-15 77.4
Msa0117880 MtrunA17_Chr1g0162931 62.069 58 21 1 207 263 14 71 3.37e-15 75.1
Msa0117880 MtrunA17_Chr1g0210911 63.462 52 19 0 212 263 24 75 6.79e-15 75.1
Msa0117880 MtrunA17_Chr3g0095611 54.237 59 27 0 208 266 17 75 1.11e-14 72.4
Msa0117880 MtrunA17_Chr1g0154261 48.000 75 38 1 201 274 116 190 1.19e-14 73.9
Msa0117880 MtrunA17_Chr4g0062921 43.478 92 47 1 181 272 211 297 1.06e-13 72.0
Msa0117880 MtrunA17_Chr2g0283951 58.491 53 22 0 208 260 87 139 3.13e-13 70.5
Msa0117880 MtrunA17_Chr7g0275401 54.098 61 27 1 203 263 185 244 4.91e-13 68.9
Msa0117880 MtrunA17_Chr1g0198601 51.667 60 29 0 210 269 211 270 1.25e-12 68.6
Msa0117880 MtrunA17_Chr4g0009901 50.877 57 27 1 208 264 166 221 2.87e-12 66.6
Msa0117880 MtrunA17_Chr4g0045361 54.386 57 26 0 208 264 272 328 8.36e-12 66.2
Msa0117880 MtrunA17_Chr5g0400241 45.570 79 39 2 191 266 289 366 1.08e-11 66.2
Msa0117880 MtrunA17_Chr5g0422621 41.304 92 48 2 178 264 162 252 1.72e-11 65.1
Msa0117880 MtrunA17_Chr2g0304841 54.545 55 24 1 210 264 213 266 1.72e-11 65.9
Msa0117880 MtrunA17_Chr5g0402631 54.386 57 26 0 208 264 212 268 2.22e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117880 AT5G06800.1 80.000 135 26 1 210 343 192 326 1.04e-70 226
Msa0117880 AT5G06800.2 77.143 140 26 2 210 343 192 331 2.86e-68 220
Msa0117880 AT4G28610.1 56.522 161 63 4 193 350 212 368 1.50e-52 180
Msa0117880 AT5G29000.1 45.755 212 89 5 141 339 124 322 2.59e-51 176
Msa0117880 AT5G29000.3 45.755 212 89 5 141 339 124 322 2.59e-51 176
Msa0117880 AT5G29000.2 45.755 212 89 5 141 339 167 365 4.76e-51 176
Msa0117880 AT2G01060.1 53.503 157 68 3 205 358 10 164 3.69e-50 170
Msa0117880 AT3G04450.4 45.366 205 94 6 162 361 157 348 4.79e-50 173
Msa0117880 AT3G04450.2 45.366 205 94 6 162 361 157 348 4.79e-50 173
Msa0117880 AT3G04450.1 45.366 205 94 6 162 361 197 388 8.83e-50 173
Msa0117880 AT3G13040.3 46.561 189 89 5 183 360 211 398 5.72e-46 163
Msa0117880 AT3G13040.1 46.561 189 89 5 183 360 211 398 5.72e-46 163
Msa0117880 AT3G13040.2 46.561 189 89 5 183 360 211 398 5.72e-46 163
Msa0117880 AT2G20400.1 56.923 130 54 2 210 337 231 360 1.72e-43 155
Msa0117880 AT2G20400.2 56.489 131 54 3 210 337 231 361 9.38e-42 151
Msa0117880 AT5G18240.1 43.976 166 76 2 206 354 41 206 4.71e-38 141
Msa0117880 AT5G18240.4 43.976 166 76 2 206 354 41 206 4.71e-38 141
Msa0117880 AT3G04030.3 48.466 163 62 4 206 351 41 198 1.40e-37 140
Msa0117880 AT1G69580.1 45.806 155 63 3 206 340 30 183 1.06e-36 136
Msa0117880 AT5G06800.3 90.769 65 6 0 210 274 192 256 1.45e-36 134
Msa0117880 AT1G69580.2 44.516 155 66 2 206 340 30 184 3.37e-36 135
Msa0117880 AT3G24120.1 42.515 167 75 2 195 340 26 192 8.68e-36 132
Msa0117880 AT4G13640.1 42.515 167 80 3 189 339 14 180 2.41e-35 131
Msa0117880 AT5G18240.5 43.373 166 75 3 206 354 41 204 5.15e-35 133
Msa0117880 AT1G79430.2 47.445 137 65 3 210 340 34 169 1.48e-34 130
Msa0117880 AT3G04030.2 47.239 163 63 5 206 351 41 197 1.62e-34 131
Msa0117880 AT3G24120.2 41.765 170 75 3 195 340 26 195 1.01e-33 127
Msa0117880 AT4G13640.2 41.765 170 80 4 189 339 14 183 2.33e-33 126
Msa0117880 AT5G45580.1 42.500 160 62 4 210 344 7 161 7.27e-33 124
Msa0117880 AT5G45580.2 42.500 160 62 4 210 344 23 177 1.03e-32 124
Msa0117880 AT5G18240.2 41.566 166 74 3 206 354 41 200 1.28e-32 126
Msa0117880 AT5G18240.3 41.566 166 74 3 206 354 41 200 1.28e-32 126
Msa0117880 AT3G04030.1 46.012 163 60 5 206 351 41 192 3.74e-32 125
Msa0117880 AT2G01060.2 52.137 117 51 3 245 358 1 115 3.79e-30 116
Msa0117880 AT3G04450.3 55.556 90 34 2 181 270 215 298 1.65e-26 108
Msa0117880 AT3G12730.1 37.500 176 91 6 210 369 23 195 1.73e-26 106
Msa0117880 AT5G29000.4 42.754 138 58 3 141 270 167 291 2.20e-25 105
Msa0117880 AT3G04030.5 44.094 127 49 4 242 351 1 122 3.49e-18 84.7
Msa0117880 AT1G79430.1 42.857 105 53 3 242 340 1 104 5.56e-18 84.0
Msa0117880 AT4G04605.1 54.412 68 31 0 199 266 3 70 4.78e-17 79.7
Msa0117880 AT2G42660.1 53.731 67 31 0 208 274 48 114 1.76e-16 79.0
Msa0117880 AT5G16560.1 57.377 61 26 0 212 272 221 281 3.02e-16 80.1
Msa0117880 AT5G42630.2 53.623 69 30 1 212 278 107 175 3.42e-16 77.4
Msa0117880 AT5G42630.1 53.623 69 30 1 212 278 107 175 4.99e-16 77.8
Msa0117880 AT2G02060.2 49.383 81 33 1 191 263 2 82 7.32e-16 77.0
Msa0117880 AT2G02060.1 49.383 81 33 1 191 263 2 82 7.32e-16 77.0
Msa0117880 AT2G06020.1 46.053 76 40 1 191 266 68 142 7.39e-16 77.8
Msa0117880 AT2G40260.1 54.545 77 29 3 203 274 70 145 7.59e-16 79.0
Msa0117880 AT1G14600.1 63.462 52 19 0 212 263 25 76 2.24e-15 75.9
Msa0117880 AT2G38300.1 60.000 55 22 0 212 266 56 110 2.33e-15 77.0
Msa0117880 AT4G17695.1 55.738 61 27 0 212 272 166 226 2.45e-15 76.6
Msa0117880 AT1G32240.2 60.000 55 22 0 212 266 215 269 2.62e-15 77.0
Msa0117880 AT1G32240.1 60.000 55 22 0 212 266 215 269 2.89e-15 77.0
Msa0117880 AT4G04580.1 49.231 65 33 0 199 263 3 67 5.68e-14 69.7
Msa0117880 AT4G37180.1 62.264 53 20 0 212 264 212 264 6.17e-14 72.8
Msa0117880 AT4G37180.2 62.264 53 20 0 212 264 219 271 8.18e-14 72.4
Msa0117880 AT5G18240.6 37.795 127 51 4 242 351 1 116 9.27e-14 72.0
Msa0117880 AT2G03500.1 52.381 63 30 0 210 272 233 295 1.92e-13 71.6
Msa0117880 AT3G04030.4 40.945 127 47 5 242 351 1 116 3.28e-13 70.1
Msa0117880 AT5G58080.1 46.154 78 39 2 203 280 187 261 2.04e-12 68.9
Msa0117880 AT3G16857.3 58.182 55 22 1 210 264 167 220 5.58e-12 67.8
Msa0117880 AT3G16857.2 58.182 55 22 1 210 264 237 290 7.45e-12 67.4
Msa0117880 AT3G16857.1 58.182 55 22 1 210 264 237 290 7.54e-12 67.4
Msa0117880 AT4G04555.1 56.604 53 23 0 214 266 18 70 1.88e-11 60.8
Msa0117880 AT4G37180.3 61.224 49 19 0 212 260 212 260 2.05e-11 64.3

Find 54 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTGAACACTCAAAATT+TGG 0.191936 1_3:-39911889 Msa0117880:CDS
TTCTAATAAGGTTAATGATT+TGG 0.230770 1_3:-39914562 Msa0117880:CDS
TTTCCATTAGAATGAATTAA+TGG 0.240080 1_3:+39914321 None:intergenic
TCCATTACAAGCAGGGTTTC+CGG 0.269736 1_3:+39914082 None:intergenic
AGTCCATTAATTCATTCTAA+TGG 0.307810 1_3:-39914324 Msa0117880:CDS
TACTACTTGTCTTCTGTTGT+TGG 0.310590 1_3:+39911916 None:intergenic
ATTTAGTCAACCATTGGTTA+TGG 0.320692 1_3:-39914790 Msa0117880:exon
CAACACCGAAAGCGATATTA+AGG 0.350678 1_3:-39913686 Msa0117880:CDS
ACTCAAAATTGTGGCTAGAT+TGG 0.356646 1_3:+39914490 None:intergenic
GAATTACCCTGAGCTGGTTC+TGG 0.358434 1_3:+39913588 None:intergenic
ACATTTCCTGTTGACATAGT+TGG 0.364026 1_3:+39914116 None:intergenic
ATGGTAACCTCAATATCTTT+TGG 0.370533 1_3:+39911843 None:intergenic
GGAAATGTATCAACGAATTC+CGG 0.376595 1_3:-39914101 Msa0117880:CDS
ATCAGCCTTAATATCGCTTT+CGG 0.385906 1_3:+39913681 None:intergenic
GAAAATTGAGATATCAAAAG+AGG 0.399023 1_3:+39914585 None:intergenic
CCACAATATGATTACCAAGT+TGG 0.422118 1_3:-39914624 Msa0117880:CDS
GGAATTCCCTTTGTATCAAA+GGG 0.429673 1_3:-39914541 Msa0117880:CDS
ATTGGTTTGTTGTTGAATCA+AGG 0.432732 1_3:+39914508 None:intergenic
CTGTCTCCAACTATGTCAAC+AGG 0.441628 1_3:-39914122 Msa0117880:CDS
TACTACTTTCATTTCCAACT+TGG 0.455279 1_3:+39914610 None:intergenic
GAGAAATTCAGCTGTGAACC+TGG 0.457308 1_3:+39914161 None:intergenic
TGGAATTCCCTTTGTATCAA+AGG 0.460488 1_3:-39914542 Msa0117880:CDS
TCCGGAAACCCTGCTTGTAA+TGG 0.462303 1_3:-39914083 Msa0117880:CDS
ATATATGCCAGAACCAGCTC+AGG 0.465721 1_3:-39913595 Msa0117880:CDS
CTGAAGTTGGTGACTCAAAA+CGG 0.487919 1_3:+39914679 None:intergenic
AAAATTACAGTTGCGAATAG+AGG 0.499177 1_3:-39911970 Msa0117880:CDS
CTCCAAGAAAATTCCCACAT+TGG 0.501031 1_3:+39914409 None:intergenic
CCAACTTGGTAATCATATTG+TGG 0.502891 1_3:+39914624 None:intergenic
CCCTGCTTGTAATGGATCAT+CGG 0.507035 1_3:-39914075 Msa0117880:CDS
GTTGAGTGTGTGAATCGCCT+TGG 0.507842 1_3:-39914002 Msa0117880:CDS
TTATGCAACTGAAATTTGCA+TGG 0.523528 1_3:-39914652 Msa0117880:CDS
ACCGATGATCCATTACAAGC+AGG 0.527035 1_3:+39914074 None:intergenic
CAAGTAAAACACGAATAAGA+TGG 0.534054 1_3:-39914049 Msa0117880:CDS
TGATATACCAAAAGATATTG+AGG 0.549715 1_3:-39911850 Msa0117880:CDS
CAGTGGCTTGCAAATTAGAG+AGG 0.550038 1_3:-39912796 Msa0117880:CDS
ATAACAGAATTACCCTGAGC+TGG 0.551604 1_3:+39913582 None:intergenic
TATGCAACTGAAATTTGCAT+GGG 0.562190 1_3:-39914651 Msa0117880:CDS
CCGATGATCCATTACAAGCA+GGG 0.564544 1_3:+39914075 None:intergenic
CAAAACCAAAACCAAGGACA+AGG 0.566148 1_3:-39914741 Msa0117880:CDS
AACTTGACAACTCAAAATTG+TGG 0.571457 1_3:+39914481 None:intergenic
AAAATTGAGATATCAAAAGA+GGG 0.579511 1_3:+39914586 None:intergenic
AGCTGCAGCTAGACGTTCAG+AGG 0.587380 1_3:-39912767 Msa0117880:CDS
GAAAGCGATATTAAGGCTGA+TGG 0.589838 1_3:-39913679 Msa0117880:CDS
GAGTGTGTGAATCGCCTTGG+CGG 0.593858 1_3:-39913999 Msa0117880:CDS
TTAAGGCTGATGGATTCAGA+TGG 0.601499 1_3:-39913669 Msa0117880:CDS
AATCCAATAAAATCCAATGT+GGG 0.615499 1_3:-39914422 Msa0117880:CDS
AAATCCAATAAAATCCAATG+TGG 0.616777 1_3:-39914423 Msa0117880:CDS
ACTTACTCTCGGCACCGCCA+AGG 0.616888 1_3:+39913985 None:intergenic
CAACAGAAGACAAGTAGTAG+TGG 0.631876 1_3:-39911912 Msa0117880:CDS
GCGTCTTCATGAACAACTAG+AGG 0.636358 1_3:-39912745 Msa0117880:intron
GATGATTGTTCCATAACCAA+TGG 0.643571 1_3:+39914780 None:intergenic
CAAAGTCAAAACCAAAACCA+AGG 0.666219 1_3:-39914747 Msa0117880:CDS
TATATGCCAGAACCAGCTCA+GGG 0.672812 1_3:-39913594 Msa0117880:intron
CAGTTGCGAATAGAGGAACA+AGG 0.704497 1_3:-39911963 Msa0117880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAAAAGTAAATTATA+AGG + chr1_3:39912343-39912362 None:intergenic 10.0%
!! AATTATTAAATGATAAATAG+AGG - chr1_3:39913478-39913497 Msa0117880:intron 10.0%
!!! TTGTTTCTATTTTCATTTAT+TGG - chr1_3:39912358-39912377 Msa0117880:intron 15.0%
!! TTAGAATTTATATTCAGTAA+GGG + chr1_3:39913606-39913625 None:intergenic 15.0%
!!! TTTAGAATTTATATTCAGTA+AGG + chr1_3:39913607-39913626 None:intergenic 15.0%
!! TATTATAATAAACAATCACT+CGG - chr1_3:39914315-39914334 Msa0117880:CDS 15.0%
!! TAATAAGGGAAAATAAATTA+AGG - chr1_3:39914377-39914396 Msa0117880:CDS 15.0%
!! AATAAGGGAAAATAAATTAA+GGG - chr1_3:39914378-39914397 Msa0117880:CDS 15.0%
!! AAAATTGAGATATCAAAAGA+GGG + chr1_3:39912020-39912039 None:intergenic 20.0%
!!! ATCTCAATTTTCTTCTAATA+AGG - chr1_3:39912029-39912048 Msa0117880:intron 20.0%
!! TTCTAATAAGGTTAATGATT+TGG - chr1_3:39912041-39912060 Msa0117880:intron 20.0%
!! TTTCCATTAGAATGAATTAA+TGG + chr1_3:39912285-39912304 None:intergenic 20.0%
!! AAATGTTGTTAGAAAGTAAA+CGG - chr1_3:39912851-39912870 Msa0117880:intron 20.0%
!! TATCTATAATGTAAAGTACA+TGG - chr1_3:39913061-39913080 Msa0117880:intron 20.0%
!!! AAACTTTATTACAACTTTTC+AGG + chr1_3:39913421-39913440 None:intergenic 20.0%
!! GAATTATAGAACATAACAAT+CGG + chr1_3:39913725-39913744 None:intergenic 20.0%
!! ATTGTTATGTTCTATAATTC+CGG - chr1_3:39913725-39913744 Msa0117880:intron 20.0%
!!! TTTATTTTCATAATTTGCAG+TGG - chr1_3:39913790-39913809 Msa0117880:intron 20.0%
!! AGTCACAAAATAATGTATAA+AGG + chr1_3:39913899-39913918 None:intergenic 20.0%
!!! AATTCAACTATAGATGATTT+TGG + chr1_3:39914261-39914280 None:intergenic 20.0%
!! ATTTCTCTTACATTAATTTC+TGG - chr1_3:39914596-39914615 Msa0117880:CDS 20.0%
! GAAAATTGAGATATCAAAAG+AGG + chr1_3:39912021-39912040 None:intergenic 25.0%
!! TGGATTTTATTGGATTTTTC+AGG + chr1_3:39912177-39912196 None:intergenic 25.0%
! AAATCCAATAAAATCCAATG+TGG - chr1_3:39912180-39912199 Msa0117880:intron 25.0%
! AATCCAATAAAATCCAATGT+GGG - chr1_3:39912181-39912200 Msa0117880:intron 25.0%
! AGTCCATTAATTCATTCTAA+TGG - chr1_3:39912279-39912298 Msa0117880:intron 25.0%
! ATAATGCATTTACTTACTCT+CGG + chr1_3:39912632-39912651 None:intergenic 25.0%
! AGAAAGAAGATGAAAGATAA+CGG + chr1_3:39912762-39912781 None:intergenic 25.0%
! AAAAAGCTCAAAACAACTTA+TGG - chr1_3:39913293-39913312 Msa0117880:intron 25.0%
!! ACTTTTCTCTAACATATGAA+AGG + chr1_3:39913456-39913475 None:intergenic 25.0%
! ATAGCTTATACTTAAGAACA+AGG - chr1_3:39913930-39913949 Msa0117880:intron 25.0%
! TATCGTAATATCAAGTTTCA+TGG + chr1_3:39913977-39913996 None:intergenic 25.0%
! ATTATGAGTACGTTGAAATA+CGG + chr1_3:39914048-39914067 None:intergenic 25.0%
! TGAACTTCAAATTTCATAGA+TGG + chr1_3:39914126-39914145 None:intergenic 25.0%
! AAGTGTAGTCTTTACTAATA+AGG - chr1_3:39914362-39914381 Msa0117880:CDS 25.0%
! AGTGTAGTCTTTACTAATAA+GGG - chr1_3:39914363-39914382 Msa0117880:CDS 25.0%
! GGAAAATAAATTAAGGGTAA+AGG - chr1_3:39914384-39914403 Msa0117880:CDS 25.0%
! ATAAATTAAGGGTAAAGGAA+TGG - chr1_3:39914389-39914408 Msa0117880:CDS 25.0%
!! TTTTTATGTCTTAGATACAG+CGG + chr1_3:39914482-39914501 None:intergenic 25.0%
! TGATATACCAAAAGATATTG+AGG - chr1_3:39914753-39914772 Msa0117880:CDS 25.0%
! ATTTAGTCAACCATTGGTTA+TGG - chr1_3:39911813-39911832 Msa0117880:CDS 30.0%
TTATGCAACTGAAATTTGCA+TGG - chr1_3:39911951-39911970 Msa0117880:CDS 30.0%
TATGCAACTGAAATTTGCAT+GGG - chr1_3:39911952-39911971 Msa0117880:CDS 30.0%
TACTACTTTCATTTCCAACT+TGG + chr1_3:39911996-39912015 None:intergenic 30.0%
! GATTTTCCCTTTGATACAAA+GGG + chr1_3:39912071-39912090 None:intergenic 30.0%
! TGATTTTCCCTTTGATACAA+AGG + chr1_3:39912072-39912091 None:intergenic 30.0%
!! ATTGGTTTGTTGTTGAATCA+AGG + chr1_3:39912098-39912117 None:intergenic 30.0%
AACTTGACAACTCAAAATTG+TGG + chr1_3:39912125-39912144 None:intergenic 30.0%
!! TTTTCAGGAGATCTAAGAAT+TGG + chr1_3:39912162-39912181 None:intergenic 30.0%
! ATTCCCACATTGGATTTTAT+TGG + chr1_3:39912187-39912206 None:intergenic 30.0%
CAAGTAAAACACGAATAAGA+TGG - chr1_3:39912554-39912573 Msa0117880:intron 30.0%
TTACTTTGTATGTAAATCGC+TGG + chr1_3:39912824-39912843 None:intergenic 30.0%
CGAAAATTTGATTGTGTTCT+TGG - chr1_3:39912877-39912896 Msa0117880:intron 30.0%
! TCTGCAAATGACTTTTAACA+TGG + chr1_3:39912972-39912991 None:intergenic 30.0%
! AACAGTTTCATAAGTGCTTT+TGG - chr1_3:39913349-39913368 Msa0117880:intron 30.0%
AAGTGAAGATTAAGACTAAC+TGG + chr1_3:39913543-39913562 None:intergenic 30.0%
AGTCTTAATCTTCACTTCAA+TGG - chr1_3:39913546-39913565 Msa0117880:intron 30.0%
AAGTAAGTAGCATTACGATT+TGG + chr1_3:39913696-39913715 None:intergenic 30.0%
!! GTACTCATAATTTGTTATCG+AGG - chr1_3:39914057-39914076 Msa0117880:CDS 30.0%
! TTATCGAGGTGTTATAATCA+GGG - chr1_3:39914071-39914090 Msa0117880:CDS 30.0%
CCTCTAATAAAATCCAAACA+TGG + chr1_3:39914103-39914122 None:intergenic 30.0%
! CCATGTTTGGATTTTATTAG+AGG - chr1_3:39914100-39914119 Msa0117880:CDS 30.0%
! TCTAAGACAATGAAACACTT+CGG - chr1_3:39914420-39914439 Msa0117880:CDS 30.0%
!! GGGCTTTAAAAAAATGTCTA+TGG + chr1_3:39914532-39914551 None:intergenic 30.0%
AAAATTACAGTTGCGAATAG+AGG - chr1_3:39914633-39914652 Msa0117880:CDS 30.0%
!! CCAAATTTTGAGTGTTCAAT+TGG + chr1_3:39914717-39914736 None:intergenic 30.0%
CCAATTGAACACTCAAAATT+TGG - chr1_3:39914714-39914733 Msa0117880:CDS 30.0%
! ATGGTAACCTCAATATCTTT+TGG + chr1_3:39914763-39914782 None:intergenic 30.0%
!! ATTGAGGTTACCATTTTTGA+AGG - chr1_3:39914769-39914788 Msa0117880:CDS 30.0%
!! TTGAGGTTACCATTTTTGAA+GGG - chr1_3:39914770-39914789 Msa0117880:CDS 30.0%
GATGATTGTTCCATAACCAA+TGG + chr1_3:39911826-39911845 None:intergenic 35.0%
!!! CTTGGTTTTGGTTTTGACTT+TGG + chr1_3:39911858-39911877 None:intergenic 35.0%
CAAAGTCAAAACCAAAACCA+AGG - chr1_3:39911856-39911875 Msa0117880:CDS 35.0%
! ATTTTCCTTGTCCTTGGTTT+TGG + chr1_3:39911870-39911889 None:intergenic 35.0%
! ATGATGATTTTCCTTGTCCT+TGG + chr1_3:39911876-39911895 None:intergenic 35.0%
GTTGCATAAAAAGCTGAAGT+TGG + chr1_3:39911940-39911959 None:intergenic 35.0%
! CCAACTTGGTAATCATATTG+TGG + chr1_3:39911982-39912001 None:intergenic 35.0%
CCACAATATGATTACCAAGT+TGG - chr1_3:39911979-39911998 Msa0117880:CDS 35.0%
TGGAATTCCCTTTGTATCAA+AGG - chr1_3:39912061-39912080 Msa0117880:intron 35.0%
GGAATTCCCTTTGTATCAAA+GGG - chr1_3:39912062-39912081 Msa0117880:intron 35.0%
ACTCAAAATTGTGGCTAGAT+TGG + chr1_3:39912116-39912135 None:intergenic 35.0%
! ATCCAATGTGGGAATTTTCT+TGG - chr1_3:39912192-39912211 Msa0117880:intron 35.0%
! TCGAATCTTTCGTGTTTTGT+AGG - chr1_3:39912396-39912415 Msa0117880:intron 35.0%
! TGTGGTTCATATGATTTTCC+AGG - chr1_3:39912424-39912443 Msa0117880:intron 35.0%
ACATTTCCTGTTGACATAGT+TGG + chr1_3:39912490-39912509 None:intergenic 35.0%
GGAAATGTATCAACGAATTC+CGG - chr1_3:39912502-39912521 Msa0117880:intron 35.0%
ATCAGCCTTAATATCGCTTT+CGG + chr1_3:39912925-39912944 None:intergenic 35.0%
TGACATAGTACTTAGAACAC+AGG - chr1_3:39913132-39913151 Msa0117880:intron 35.0%
GACATAGTACTTAGAACACA+GGG - chr1_3:39913133-39913152 Msa0117880:intron 35.0%
ACATAGTACTTAGAACACAG+GGG - chr1_3:39913134-39913153 Msa0117880:intron 35.0%
ACAAACTGCTAACATGTTTC+AGG - chr1_3:39913626-39913645 Msa0117880:CDS 35.0%
CAAACTGCTAACATGTTTCA+GGG - chr1_3:39913627-39913646 Msa0117880:CDS 35.0%
! CTCTACATGAGTTCTTTTCT+CGG + chr1_3:39913657-39913676 None:intergenic 35.0%
! GTTATCGAGGTGTTATAATC+AGG - chr1_3:39914070-39914089 Msa0117880:CDS 35.0%
AGTGTTTCATTGTCTTAGAC+CGG + chr1_3:39914419-39914438 None:intergenic 35.0%
GAAAACACAAATACTGAGCA+GGG + chr1_3:39914552-39914571 None:intergenic 35.0%
AGAAAACACAAATACTGAGC+AGG + chr1_3:39914553-39914572 None:intergenic 35.0%
TACTACTTGTCTTCTGTTGT+TGG + chr1_3:39914690-39914709 None:intergenic 35.0%
AGAATGAGACCCTTCAAAAA+TGG + chr1_3:39914782-39914801 None:intergenic 35.0%
CAAAACCAAAACCAAGGACA+AGG - chr1_3:39911862-39911881 Msa0117880:CDS 40.0%
!! CTGAAGTTGGTGACTCAAAA+CGG + chr1_3:39911927-39911946 None:intergenic 40.0%
CTCCAAGAAAATTCCCACAT+TGG + chr1_3:39912197-39912216 None:intergenic 40.0%
! CGTGTTTTGTAGGTTTCTTG+TGG - chr1_3:39912406-39912425 Msa0117880:intron 40.0%
TCTTGGATGCTTGATTGTAG+AGG - chr1_3:39912894-39912913 Msa0117880:intron 40.0%
CAACACCGAAAGCGATATTA+AGG - chr1_3:39912917-39912936 Msa0117880:intron 40.0%
GAAAGCGATATTAAGGCTGA+TGG - chr1_3:39912924-39912943 Msa0117880:intron 40.0%
!! TTAAGGCTGATGGATTCAGA+TGG - chr1_3:39912934-39912953 Msa0117880:CDS 40.0%
ATAACAGAATTACCCTGAGC+TGG + chr1_3:39913024-39913043 None:intergenic 40.0%
GCTCAAAACAACTTATGGAC+AGG - chr1_3:39913298-39913317 Msa0117880:intron 40.0%
TAAGCGAGAAATGATTGCAC+CGG + chr1_3:39913747-39913766 None:intergenic 40.0%
GACTGATGTGGCTTCAATTA+TGG - chr1_3:39914451-39914470 Msa0117880:CDS 40.0%
AAATGTCTATGGATGCGATC+TGG + chr1_3:39914521-39914540 None:intergenic 40.0%
CAACAGAAGACAAGTAGTAG+TGG - chr1_3:39914691-39914710 Msa0117880:CDS 40.0%
GAGAAATTCAGCTGTGAACC+TGG + chr1_3:39912445-39912464 None:intergenic 45.0%
CTGTCTCCAACTATGTCAAC+AGG - chr1_3:39912481-39912500 Msa0117880:intron 45.0%
TCCATTACAAGCAGGGTTTC+CGG + chr1_3:39912524-39912543 None:intergenic 45.0%
CCGATGATCCATTACAAGCA+GGG + chr1_3:39912531-39912550 None:intergenic 45.0%
!! CCCTGCTTGTAATGGATCAT+CGG - chr1_3:39912528-39912547 Msa0117880:intron 45.0%
ACCGATGATCCATTACAAGC+AGG + chr1_3:39912532-39912551 None:intergenic 45.0%
! AACGGAAGTCAACGCGTTTT+TGG + chr1_3:39912744-39912763 None:intergenic 45.0%
ATATATGCCAGAACCAGCTC+AGG - chr1_3:39913008-39913027 Msa0117880:intron 45.0%
TATATGCCAGAACCAGCTCA+GGG - chr1_3:39913009-39913028 Msa0117880:intron 45.0%
! CAGTGGCTTGCAAATTAGAG+AGG - chr1_3:39913807-39913826 Msa0117880:intron 45.0%
GCGTCTTCATGAACAACTAG+AGG - chr1_3:39913858-39913877 Msa0117880:intron 45.0%
ATCAGGGACAGATCCATGTT+TGG - chr1_3:39914087-39914106 Msa0117880:CDS 45.0%
AGACTACACTTCGCAACTAC+AGG + chr1_3:39914353-39914372 None:intergenic 45.0%
TCGGTCAAATGTGACTGATG+TGG - chr1_3:39914439-39914458 Msa0117880:CDS 45.0%
CAGTTGCGAATAGAGGAACA+AGG - chr1_3:39914640-39914659 Msa0117880:CDS 45.0%
TCCGGAAACCCTGCTTGTAA+TGG - chr1_3:39912520-39912539 Msa0117880:intron 50.0%
GTTGAGTGTGTGAATCGCCT+TGG - chr1_3:39912601-39912620 Msa0117880:intron 50.0%
! GAATTACCCTGAGCTGGTTC+TGG + chr1_3:39913018-39913037 None:intergenic 50.0%
AGGGTAAAGGAATGGCGTTC+CGG - chr1_3:39914397-39914416 Msa0117880:CDS 50.0%
ATGTCTTAGATACAGCGGCG+TGG + chr1_3:39914477-39914496 None:intergenic 50.0%
GAGTGTGTGAATCGCCTTGG+CGG - chr1_3:39912604-39912623 Msa0117880:intron 55.0%
AGCTGCAGCTAGACGTTCAG+AGG - chr1_3:39913836-39913855 Msa0117880:intron 55.0%
CGATCTGGACTGCAACATCG+AGG + chr1_3:39914506-39914525 None:intergenic 55.0%
ACTTACTCTCGGCACCGCCA+AGG + chr1_3:39912621-39912640 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 39911812 39914813 39911812 ID=Msa0117880;Name=Msa0117880
chr1_3 mRNA 39911812 39914813 39911812 ID=Msa0117880-mRNA-1;Parent=Msa0117880;Name=Msa0117880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=20|1|0.83|1|1|1|6|0|376
chr1_3 exon 39911812 39912000 39911812 ID=Msa0117880-mRNA-1:exon:12236;Parent=Msa0117880-mRNA-1
chr1_3 exon 39912746 39912815 39912746 ID=Msa0117880-mRNA-1:exon:12235;Parent=Msa0117880-mRNA-1
chr1_3 exon 39912926 39912977 39912926 ID=Msa0117880-mRNA-1:exon:12234;Parent=Msa0117880-mRNA-1
chr1_3 exon 39913595 39913711 39913595 ID=Msa0117880-mRNA-1:exon:12233;Parent=Msa0117880-mRNA-1
chr1_3 exon 39913991 39914207 39913991 ID=Msa0117880-mRNA-1:exon:12232;Parent=Msa0117880-mRNA-1
chr1_3 exon 39914308 39914813 39914308 ID=Msa0117880-mRNA-1:exon:12231;Parent=Msa0117880-mRNA-1
chr1_3 five_prime_UTR 39914794 39914813 39914794 ID=Msa0117880-mRNA-1:five_prime_utr;Parent=Msa0117880-mRNA-1
chr1_3 CDS 39914308 39914793 39914308 ID=Msa0117880-mRNA-1:cds;Parent=Msa0117880-mRNA-1
chr1_3 CDS 39913991 39914207 39913991 ID=Msa0117880-mRNA-1:cds;Parent=Msa0117880-mRNA-1
chr1_3 CDS 39913595 39913711 39913595 ID=Msa0117880-mRNA-1:cds;Parent=Msa0117880-mRNA-1
chr1_3 CDS 39912926 39912977 39912926 ID=Msa0117880-mRNA-1:cds;Parent=Msa0117880-mRNA-1
chr1_3 CDS 39912746 39912815 39912746 ID=Msa0117880-mRNA-1:cds;Parent=Msa0117880-mRNA-1
chr1_3 CDS 39911812 39912000 39911812 ID=Msa0117880-mRNA-1:cds;Parent=Msa0117880-mRNA-1
Gene Sequence

>Msa0117880

ATGGAACAATCATCATACATATTCCAAAGTCAAAACCAAAACCAAGGACAAGGAAAATCATCATCATCATCATCATCAAGCACAATTATGAGCCGTTTTGAGTCACCAACTTCAGCTTTTTATGCAACTGAAATTTGCATGGGTTTTCCACAATATGATTACCAAGTTGGAAATGAAAGTAGTAACCCTCTTTTGATATCTCAATTTTCTTCTAATAAGGTTAATGATTTGGAATTCCCTTTGTATCAAAGGGAAAATCATTACCTTGATTCAACAACAAACCAATCTAGCCACAATTTTGAGTTGTCAAGTTTAAACACTTTGCAACCAATTCTTAGATCTCCTGAAAAATCCAATAAAATCCAATGTGGGAATTTTCTTGGAGAAAATTTTCTCTCAGTTGAGCAACATAAATTCTTCATTGATGATGCTGCATCAGTTAGTATGAGTCCATTAATTCATTCTAATGGAAATCAAGATCATAAAGTTTCTTGTGGTTCATATGATTTTCCAGGTTCACAGCTGAATTTCTCTTATCAGCAAGATAAACTGTCTCCAACTATGTCAACAGGAAATGTATCAACGAATTCCGGAAACCCTGCTTGTAATGGATCATCGGTTTCAAGTAAAACACGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGCGGTGCCGAGAAGGCAACACCGAAAGCGATATTAAGGCTGATGGATTCAGATGGATTGACAATTTTCCATGTTAAAAGTCATTTGCAGAAGTATAGAATTGCAAAATATATGCCAGAACCAGCTCAGGGGAAATCCGAGAAAAGAACTCATGTAGAGAATGTGAATCTTGATGCCAAATCTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGACGTTCAGAGGCGTCTTCATGAACAACTAGAGATTCAGCGAAAATTACAGTTGCGAATAGAGGAACAAGGAAAGCAGTTGAAGATGATGTTTGACCAACAACAGAAGACAAGTAGTAGTGGCCAATTGAACACTCAAAATTTGGACAATACAACAAACAATGATATACCAAAAGATATTGAGGTTACCATTTTTGAAGGGTCTCATTCTCAATGCTCATAA
Protein sequence

>Msa0117880

MEQSSYIFQSQNQNQGQGKSSSSSSSSTIMSRFESPTSAFYATEICMGFPQYDYQVGNESSNPLLISQFSSNKVNDLEFPLYQRENHYLDSTTNQSSHNFELSSLNTLQPILRSPEKSNKIQCGNFLGENFLSVEQHKFFIDDAASVSMSPLIHSNGNQDHKVSCGSYDFPGSQLNFSYQQDKLSPTMSTGNVSTNSGNPACNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPEPAQGKSEKRTHVENVNLDAKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSSSGQLNTQNLDNTTNNDIPKDIEVTIFEGSHSQCS*