Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117950 | sp|Q9SWG3|FAR1_ARATH | 26.721 | 494 | 304 | 7 | 108 | 599 | 224 | 661 | 8.06e-54 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117950 | D3YBB9 | 46.602 | 103 | 55 | 0 | 1 | 103 | 49 | 151 | 2.01e-20 | 108 |
| Msa0117950 | D3YBB9 | 78.824 | 595 | 109 | 4 | 94 | 679 | 261 | 847 | 0.0 | 964 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117950 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117950 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 499 | 679 | 1 | 184 | 1.64e-104 | 316 |
| Msa0117950 | MtrunA17_Chr3g0082121 | 34.749 | 518 | 276 | 14 | 95 | 608 | 196 | 655 | 6.15e-88 | 290 |
| Msa0117950 | MtrunA17_Chr2g0324011 | 32.308 | 455 | 255 | 7 | 94 | 546 | 168 | 571 | 9.55e-83 | 273 |
| Msa0117950 | MtrunA17_Chr1g0203721 | 29.205 | 541 | 314 | 11 | 95 | 620 | 225 | 711 | 1.10e-68 | 241 |
| Msa0117950 | MtrunA17_Chr1g0202341 | 30.022 | 453 | 260 | 11 | 95 | 543 | 210 | 609 | 6.97e-60 | 213 |
| Msa0117950 | MtrunA17_Chr6g0458391 | 29.581 | 453 | 249 | 9 | 101 | 543 | 373 | 765 | 5.30e-59 | 212 |
| Msa0117950 | MtrunA17_Chr8g0363841 | 29.360 | 453 | 270 | 7 | 95 | 546 | 177 | 580 | 4.86e-58 | 208 |
| Msa0117950 | MtrunA17_Chr6g0477261 | 28.745 | 494 | 294 | 13 | 94 | 580 | 40 | 482 | 7.37e-58 | 207 |
| Msa0117950 | MtrunA17_Chr1g0164591 | 40.506 | 237 | 134 | 3 | 95 | 329 | 76 | 307 | 9.04e-57 | 196 |
| Msa0117950 | MtrunA17_Chr2g0296781 | 28.628 | 503 | 301 | 13 | 94 | 589 | 151 | 602 | 1.02e-55 | 202 |
| Msa0117950 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 11 | 102 | 600 | 111 | 557 | 2.05e-52 | 193 |
| Msa0117950 | MtrunA17_Chr5g0448761 | 26.898 | 461 | 274 | 10 | 94 | 546 | 223 | 628 | 5.72e-52 | 192 |
| Msa0117950 | MtrunA17_Chr5g0440451 | 26.892 | 502 | 309 | 11 | 102 | 600 | 214 | 660 | 6.09e-51 | 191 |
| Msa0117950 | MtrunA17_Chr2g0287651 | 27.074 | 458 | 275 | 8 | 91 | 543 | 229 | 632 | 3.55e-49 | 185 |
| Msa0117950 | MtrunA17_Chr1g0207551 | 26.347 | 501 | 297 | 11 | 108 | 599 | 204 | 641 | 1.41e-48 | 182 |
| Msa0117950 | MtrunA17_Chr5g0441581 | 26.383 | 470 | 286 | 10 | 108 | 570 | 193 | 609 | 1.31e-46 | 176 |
| Msa0117950 | MtrunA17_Chr3g0080351 | 25.960 | 547 | 331 | 13 | 93 | 633 | 223 | 701 | 9.40e-46 | 174 |
| Msa0117950 | MtrunA17_Chr2g0329031 | 26.984 | 441 | 267 | 9 | 101 | 539 | 170 | 557 | 1.61e-45 | 173 |
| Msa0117950 | MtrunA17_Chr1g0196541 | 25.499 | 451 | 290 | 9 | 94 | 543 | 151 | 556 | 4.10e-44 | 169 |
| Msa0117950 | MtrunA17_Chr5g0448511 | 25.885 | 452 | 281 | 10 | 97 | 546 | 1 | 400 | 4.09e-43 | 163 |
| Msa0117950 | MtrunA17_Chr1g0172971 | 80.808 | 99 | 18 | 1 | 1 | 98 | 1 | 99 | 5.87e-43 | 163 |
| Msa0117950 | MtrunA17_Chr2g0287061 | 25.828 | 453 | 275 | 11 | 97 | 546 | 310 | 704 | 1.26e-42 | 165 |
| Msa0117950 | MtrunA17_Chr1g0198761 | 28.910 | 422 | 235 | 10 | 126 | 541 | 248 | 610 | 1.25e-41 | 162 |
| Msa0117950 | MtrunA17_Chr1g0203051 | 23.575 | 386 | 249 | 4 | 133 | 518 | 277 | 616 | 6.95e-36 | 144 |
| Msa0117950 | MtrunA17_Chr2g0291581 | 24.374 | 439 | 283 | 9 | 108 | 543 | 229 | 621 | 2.24e-35 | 142 |
| Msa0117950 | MtrunA17_Chr2g0290391 | 27.619 | 420 | 235 | 13 | 127 | 541 | 256 | 611 | 5.25e-35 | 141 |
| Msa0117950 | MtrunA17_Chr2g0291591 | 28.425 | 292 | 204 | 2 | 90 | 380 | 214 | 501 | 7.13e-35 | 140 |
| Msa0117950 | MtrunA17_Chr7g0258861 | 47.619 | 126 | 64 | 1 | 94 | 217 | 169 | 294 | 4.35e-34 | 132 |
| Msa0117950 | MtrunA17_Chr2g0276841 | 27.765 | 443 | 248 | 14 | 118 | 551 | 258 | 637 | 5.99e-33 | 135 |
| Msa0117950 | MtrunA17_Chr5g0431001 | 31.760 | 233 | 149 | 3 | 126 | 354 | 262 | 488 | 1.36e-29 | 123 |
| Msa0117950 | MtrunA17_Chr2g0294841 | 32.922 | 243 | 149 | 5 | 127 | 363 | 245 | 479 | 6.31e-27 | 116 |
| Msa0117950 | MtrunA17_Chr6g0475591 | 89.583 | 48 | 5 | 0 | 94 | 141 | 26 | 73 | 1.73e-22 | 91.7 |
| Msa0117950 | MtrunA17_Chr1g0149131 | 31.933 | 119 | 71 | 3 | 214 | 328 | 1 | 113 | 1.99e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117950 | AT4G15090.1 | 26.721 | 494 | 304 | 7 | 108 | 599 | 224 | 661 | 8.19e-55 | 201 |
| Msa0117950 | AT4G15090.5 | 26.721 | 494 | 304 | 7 | 108 | 599 | 224 | 661 | 8.19e-55 | 201 |
| Msa0117950 | AT4G15090.3 | 26.721 | 494 | 304 | 7 | 108 | 599 | 224 | 661 | 8.19e-55 | 201 |
| Msa0117950 | AT4G15090.2 | 26.721 | 494 | 304 | 7 | 108 | 599 | 224 | 661 | 8.19e-55 | 201 |
| Msa0117950 | AT4G15090.4 | 26.721 | 494 | 304 | 7 | 108 | 599 | 224 | 661 | 8.19e-55 | 201 |
| Msa0117950 | AT2G27110.3 | 27.063 | 521 | 322 | 12 | 82 | 600 | 25 | 489 | 2.21e-53 | 196 |
| Msa0117950 | AT2G27110.2 | 27.063 | 521 | 322 | 12 | 82 | 600 | 170 | 634 | 9.11e-53 | 196 |
| Msa0117950 | AT2G27110.1 | 27.063 | 521 | 322 | 12 | 82 | 600 | 170 | 634 | 9.11e-53 | 196 |
| Msa0117950 | AT4G38180.1 | 26.593 | 455 | 280 | 9 | 94 | 546 | 235 | 637 | 9.28e-52 | 192 |
| Msa0117950 | AT3G06250.2 | 26.000 | 450 | 274 | 9 | 95 | 542 | 311 | 703 | 1.62e-45 | 174 |
| Msa0117950 | AT3G06250.1 | 26.000 | 450 | 274 | 9 | 95 | 542 | 311 | 703 | 1.62e-45 | 174 |
| Msa0117950 | AT3G06250.3 | 26.000 | 450 | 274 | 9 | 95 | 542 | 311 | 703 | 1.62e-45 | 174 |
| Msa0117950 | AT4G38170.1 | 25.986 | 431 | 261 | 12 | 116 | 543 | 24 | 399 | 8.58e-45 | 169 |
| Msa0117950 | AT3G22170.2 | 23.540 | 531 | 330 | 10 | 108 | 634 | 233 | 691 | 1.61e-43 | 168 |
| Msa0117950 | AT3G22170.1 | 23.540 | 531 | 330 | 10 | 108 | 634 | 233 | 691 | 1.61e-43 | 168 |
| Msa0117950 | AT1G76320.3 | 25.049 | 515 | 322 | 11 | 90 | 600 | 143 | 597 | 3.42e-42 | 163 |
| Msa0117950 | AT1G76320.1 | 25.049 | 515 | 322 | 11 | 90 | 600 | 143 | 597 | 7.08e-42 | 162 |
| Msa0117950 | AT1G76320.4 | 25.049 | 515 | 322 | 11 | 90 | 600 | 143 | 597 | 7.08e-42 | 162 |
| Msa0117950 | AT1G76320.2 | 24.854 | 515 | 323 | 11 | 90 | 600 | 143 | 597 | 7.81e-42 | 162 |
| Msa0117950 | AT5G18960.2 | 25.330 | 454 | 279 | 10 | 92 | 542 | 331 | 727 | 1.91e-41 | 162 |
| Msa0117950 | AT5G18960.1 | 25.330 | 454 | 279 | 10 | 92 | 542 | 331 | 727 | 1.91e-41 | 162 |
| Msa0117950 | AT2G32250.5 | 23.960 | 505 | 314 | 12 | 124 | 624 | 184 | 622 | 3.78e-34 | 139 |
| Msa0117950 | AT2G32250.7 | 23.960 | 505 | 314 | 12 | 124 | 624 | 143 | 581 | 5.44e-34 | 139 |
| Msa0117950 | AT2G32250.6 | 23.960 | 505 | 314 | 12 | 124 | 624 | 184 | 622 | 6.04e-34 | 139 |
| Msa0117950 | AT2G32250.1 | 23.960 | 505 | 314 | 12 | 124 | 624 | 184 | 622 | 6.04e-34 | 139 |
| Msa0117950 | AT2G32250.3 | 23.960 | 505 | 314 | 12 | 124 | 624 | 184 | 622 | 6.04e-34 | 139 |
| Msa0117950 | AT2G32250.8 | 23.960 | 505 | 314 | 12 | 124 | 624 | 143 | 581 | 6.07e-34 | 139 |
| Msa0117950 | AT2G32250.2 | 23.960 | 505 | 314 | 12 | 124 | 624 | 184 | 622 | 6.23e-34 | 139 |
| Msa0117950 | AT2G32250.4 | 23.960 | 505 | 314 | 12 | 124 | 624 | 184 | 622 | 6.23e-34 | 139 |
| Msa0117950 | AT1G80010.1 | 24.062 | 453 | 291 | 11 | 95 | 543 | 258 | 661 | 4.72e-32 | 133 |
| Msa0117950 | AT1G10240.2 | 26.714 | 423 | 242 | 13 | 125 | 540 | 243 | 604 | 1.56e-31 | 131 |
| Msa0117950 | AT1G10240.1 | 26.714 | 423 | 242 | 13 | 125 | 540 | 243 | 604 | 1.56e-31 | 131 |
| Msa0117950 | AT5G28530.1 | 26.625 | 477 | 268 | 18 | 76 | 541 | 214 | 619 | 2.09e-30 | 127 |
| Msa0117950 | AT1G52520.1 | 24.379 | 443 | 278 | 14 | 108 | 543 | 246 | 638 | 4.17e-30 | 127 |
| Msa0117950 | AT5G28530.3 | 26.415 | 477 | 265 | 19 | 76 | 541 | 214 | 615 | 1.04e-29 | 125 |
| Msa0117950 | AT5G28530.2 | 26.415 | 477 | 265 | 19 | 76 | 541 | 214 | 615 | 1.04e-29 | 125 |
| Msa0117950 | AT4G19990.1 | 27.612 | 268 | 187 | 3 | 100 | 364 | 106 | 369 | 5.52e-26 | 114 |
| Msa0117950 | AT4G19990.1 | 36.792 | 106 | 53 | 3 | 472 | 575 | 438 | 531 | 1.13e-12 | 71.6 |
| Msa0117950 | AT4G19990.7 | 27.612 | 268 | 187 | 3 | 100 | 364 | 177 | 440 | 5.83e-26 | 114 |
| Msa0117950 | AT4G19990.7 | 36.792 | 106 | 53 | 3 | 472 | 575 | 509 | 602 | 1.12e-12 | 72.0 |
| Msa0117950 | AT4G19990.5 | 27.612 | 268 | 187 | 3 | 100 | 364 | 163 | 426 | 6.57e-26 | 114 |
| Msa0117950 | AT4G19990.5 | 36.792 | 106 | 53 | 3 | 472 | 575 | 495 | 588 | 1.09e-12 | 72.0 |
| Msa0117950 | AT4G19990.3 | 27.612 | 268 | 187 | 3 | 100 | 364 | 163 | 426 | 6.88e-26 | 114 |
| Msa0117950 | AT4G19990.3 | 36.792 | 106 | 53 | 3 | 472 | 575 | 495 | 588 | 1.09e-12 | 72.0 |
| Msa0117950 | AT4G19990.4 | 27.612 | 268 | 187 | 3 | 100 | 364 | 163 | 426 | 6.88e-26 | 114 |
| Msa0117950 | AT4G19990.4 | 36.792 | 106 | 53 | 3 | 472 | 575 | 495 | 588 | 1.09e-12 | 72.0 |
| Msa0117950 | AT4G19990.6 | 27.612 | 268 | 187 | 3 | 100 | 364 | 163 | 426 | 9.02e-26 | 113 |
| Msa0117950 | AT4G19990.6 | 36.792 | 106 | 53 | 3 | 472 | 575 | 495 | 588 | 1.17e-12 | 72.0 |
| Msa0117950 | AT4G19990.2 | 27.612 | 268 | 187 | 3 | 100 | 364 | 163 | 426 | 9.02e-26 | 113 |
| Msa0117950 | AT4G19990.2 | 36.792 | 106 | 53 | 3 | 472 | 575 | 495 | 588 | 1.17e-12 | 72.0 |
| Msa0117950 | AT5G28530.4 | 25.337 | 371 | 200 | 16 | 182 | 541 | 252 | 556 | 6.34e-17 | 85.1 |
| Msa0117950 | AT5G28530.5 | 25.067 | 371 | 197 | 17 | 182 | 541 | 252 | 552 | 3.07e-16 | 83.2 |
Find 102 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 1_3:-40115199 | Msa0117950:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 1_3:+40114064 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1_3:-40114932 | Msa0117950:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 1_3:-40115480 | Msa0117950:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 1_3:-40115993 | Msa0117950:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 1_3:-40115447 | Msa0117950:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 1_3:+40115353 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 1_3:+40114070 | None:intergenic |
| GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 1_3:-40114635 | Msa0117950:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 1_3:-40115158 | Msa0117950:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.335577 | 1_3:-40114218 | Msa0117950:CDS |
| ACCAGTCTGGTCTGTGTATA+TGG | 0.340492 | 1_3:+40115335 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1_3:+40115943 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 1_3:-40113821 | Msa0117950:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 1_3:+40114002 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 1_3:-40114899 | Msa0117950:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.360236 | 1_3:-40116390 | Msa0117950:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 1_3:+40114342 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 1_3:-40115058 | Msa0117950:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 1_3:-40113840 | Msa0117950:three_prime_UTR |
| CTCAGCGGTGTTCTTGAGGC+AGG | 0.384154 | 1_3:-40114226 | Msa0117950:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 1_3:-40115936 | Msa0117950:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 1_3:-40114890 | Msa0117950:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1_3:-40115944 | Msa0117950:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 1_3:-40115059 | Msa0117950:CDS |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 1_3:-40114078 | Msa0117950:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 1_3:+40114088 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1_3:-40114758 | Msa0117950:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 1_3:-40114193 | Msa0117950:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 1_3:+40116471 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 1_3:-40116461 | Msa0117950:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 1_3:-40114510 | Msa0117950:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 1_3:+40114587 | None:intergenic |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 1_3:-40114552 | Msa0117950:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 1_3:+40114586 | None:intergenic |
| TGGTCTGTGTATATGGTTTG+AGG | 0.446650 | 1_3:+40115342 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 1_3:-40116307 | Msa0117950:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 1_3:-40116536 | Msa0117950:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 1_3:-40115268 | Msa0117950:CDS |
| CGCTTTAAAACGTATTGTGC+AGG | 0.458834 | 1_3:+40114409 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 1_3:-40114509 | Msa0117950:CDS |
| GGTCTTTAAATCTATAAAAG+AGG | 0.461888 | 1_3:-40116440 | Msa0117950:CDS |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 1_3:-40115104 | Msa0117950:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 1_3:-40116341 | Msa0117950:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1_3:+40114756 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 1_3:-40116403 | Msa0117950:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 1_3:-40116153 | Msa0117950:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 1_3:-40116347 | Msa0117950:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1_3:-40114742 | Msa0117950:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 1_3:+40115467 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 1_3:-40115157 | Msa0117950:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 1_3:-40116140 | Msa0117950:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.493911 | 1_3:+40114838 | None:intergenic |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1_3:-40114918 | Msa0117950:CDS |
| ACTTCAACAACGCACCAGTC+TGG | 0.501785 | 1_3:+40115322 | None:intergenic |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 1_3:+40116048 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 1_3:-40115071 | Msa0117950:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 1_3:-40114573 | Msa0117950:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 1_3:-40115053 | Msa0117950:CDS |
| AATCGAACACGTGAATGGTC+TGG | 0.516023 | 1_3:+40114955 | None:intergenic |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 1_3:+40114593 | None:intergenic |
| TAAAGAATCGAACACGTGAA+TGG | 0.523471 | 1_3:+40114950 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 1_3:-40114572 | Msa0117950:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1_3:+40114761 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 1_3:-40114012 | Msa0117950:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 1_3:-40114352 | Msa0117950:CDS |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1_3:-40114741 | Msa0117950:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 1_3:-40116471 | Msa0117950:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.559431 | 1_3:-40116296 | Msa0117950:intron |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 1_3:-40116086 | Msa0117950:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 1_3:-40116512 | Msa0117950:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 1_3:-40114266 | Msa0117950:CDS |
| ACCATATACACAGACCAGAC+TGG | 0.573964 | 1_3:-40115336 | Msa0117950:CDS |
| AGACCGCATAAGCTGACTGT+TGG | 0.574899 | 1_3:+40114837 | None:intergenic |
| ATTTCTCAGCGGTGTTCTTG+AGG | 0.580879 | 1_3:-40114230 | Msa0117950:CDS |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 1_3:-40113987 | Msa0117950:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 1_3:-40113925 | Msa0117950:three_prime_UTR |
| GCTGTCTGTGAACCATCTGT+TGG | 0.593238 | 1_3:-40114118 | Msa0117950:CDS |
| TCAGCGGTGTTCTTGAGGCA+GGG | 0.594592 | 1_3:-40114225 | Msa0117950:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 1_3:+40114150 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 1_3:-40116147 | Msa0117950:CDS |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 1_3:-40114603 | Msa0117950:CDS |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 1_3:-40113968 | Msa0117950:exon |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 1_3:+40114318 | None:intergenic |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 1_3:-40116144 | Msa0117950:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.603670 | 1_3:-40114840 | Msa0117950:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 1_3:-40114263 | Msa0117950:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1_3:-40114755 | Msa0117950:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 1_3:-40114657 | Msa0117950:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 1_3:-40116547 | Msa0117950:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 1_3:+40115102 | None:intergenic |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 1_3:-40114656 | Msa0117950:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 1_3:-40113969 | Msa0117950:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 1_3:+40114588 | None:intergenic |
| TTTGGTGCAGTACCAACAGA+TGG | 0.635771 | 1_3:+40114106 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 1_3:-40115267 | Msa0117950:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1_3:-40114917 | Msa0117950:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 1_3:+40114367 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 1_3:+40114796 | None:intergenic |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 1_3:+40114491 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 1_3:-40114508 | Msa0117950:CDS |
| GCATCTGAAATATTTCTCAG+CGG | 0.759841 | 1_3:-40114241 | Msa0117950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATGAAAAATTATTTTAA+TGG | - | chr1_3:40115248-40115267 | Msa0117950:CDS | 10.0% |
| !!! | TGAAAAATTATTTTAATGGA+AGG | - | chr1_3:40115252-40115271 | Msa0117950:CDS | 15.0% |
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr1_3:40116439-40116458 | Msa0117950:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr1_3:40113974-40113993 | Msa0117950:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr1_3:40114030-40114049 | Msa0117950:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr1_3:40114588-40114607 | Msa0117950:CDS | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr1_3:40116537-40116556 | Msa0117950:CDS | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr1_3:40113865-40113884 | Msa0117950:three_prime_UTR | 25.0% |
| ! | GGTCTTTAAATCTATAAAAG+AGG | - | chr1_3:40113937-40113956 | Msa0117950:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr1_3:40114026-40114045 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr1_3:40114036-40114055 | Msa0117950:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr1_3:40114111-40114130 | Msa0117950:CDS | 25.0% |
| !! | AAATCTTCCTTTTCGATTTT+CGG | - | chr1_3:40114188-40114207 | Msa0117950:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr1_3:40114346-40114365 | Msa0117950:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr1_3:40114347-40114366 | Msa0117950:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr1_3:40114433-40114452 | Msa0117950:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr1_3:40114459-40114478 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr1_3:40114506-40114525 | Msa0117950:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr1_3:40114608-40114627 | Msa0117950:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr1_3:40114868-40114887 | Msa0117950:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACAAT+CGG | + | chr1_3:40115086-40115105 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr1_3:40115178-40115197 | Msa0117950:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr1_3:40115445-40115464 | Msa0117950:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr1_3:40115584-40115603 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr1_3:40115619-40115638 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr1_3:40115619-40115638 | Msa0117950:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr1_3:40115720-40115739 | Msa0117950:intron | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr1_3:40115721-40115740 | Msa0117950:intron | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | - | chr1_3:40116338-40116357 | Msa0117950:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | - | chr1_3:40116339-40116358 | Msa0117950:CDS | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | + | chr1_3:40113909-40113928 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr1_3:40113906-40113925 | Msa0117950:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr1_3:40113916-40113935 | Msa0117950:three_prime_UTR | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr1_3:40114081-40114100 | Msa0117950:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr1_3:40114144-40114163 | Msa0117950:CDS | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr1_3:40114198-40114217 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr1_3:40114312-40114331 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr1_3:40114384-40114403 | Msa0117950:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr1_3:40114437-40114456 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr1_3:40114441-40114460 | Msa0117950:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr1_3:40114520-40114539 | Msa0117950:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr1_3:40114545-40114564 | Msa0117950:CDS | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr1_3:40114827-40114846 | Msa0117950:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr1_3:40114913-40114932 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr1_3:40115027-40115046 | None:intergenic | 30.0% |
| !! | TCAATTCCGATTGTTTTTCA+AGG | - | chr1_3:40115077-40115096 | Msa0117950:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr1_3:40115089-40115108 | Msa0117950:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr1_3:40115134-40115153 | Msa0117950:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr1_3:40115219-40115238 | Msa0117950:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr1_3:40115220-40115239 | Msa0117950:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr1_3:40115624-40115643 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr1_3:40115622-40115641 | Msa0117950:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr1_3:40115679-40115698 | Msa0117950:intron | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | - | chr1_3:40115742-40115761 | Msa0117950:intron | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr1_3:40115792-40115811 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr1_3:40115793-40115812 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr1_3:40115804-40115823 | Msa0117950:intron | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr1_3:40115805-40115824 | Msa0117950:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr1_3:40115901-40115920 | Msa0117950:intron | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | - | chr1_3:40115911-40115930 | Msa0117950:intron | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr1_3:40116184-40116203 | Msa0117950:intron | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr1_3:40116292-40116311 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr1_3:40116299-40116318 | Msa0117950:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr1_3:40116310-40116329 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr1_3:40116408-40116427 | Msa0117950:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr1_3:40116452-40116471 | Msa0117950:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr1_3:40116470-40116489 | Msa0117950:CDS | 30.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr1_3:40113830-40113849 | Msa0117950:three_prime_UTR | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr1_3:40113987-40114006 | Msa0117950:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr1_3:40114070-40114089 | Msa0117950:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr1_3:40114143-40114162 | Msa0117950:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr1_3:40114224-40114243 | Msa0117950:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr1_3:40114526-40114545 | Msa0117950:CDS | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | + | chr1_3:40114646-40114665 | None:intergenic | 35.0% |
| TGTACAGAGCACAAATTCTA+AGG | + | chr1_3:40114655-40114674 | None:intergenic | 35.0% | |
| AAACGCATATGATCTTTCCA+TGG | + | chr1_3:40114679-40114698 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr1_3:40114930-40114949 | Msa0117950:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr1_3:40114973-40114992 | Msa0117950:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr1_3:40115102-40115121 | Msa0117950:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr1_3:40115306-40115325 | Msa0117950:CDS | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr1_3:40115319-40115338 | Msa0117950:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr1_3:40115389-40115408 | Msa0117950:CDS | 35.0% |
| TAAAGAATCGAACACGTGAA+TGG | + | chr1_3:40115430-40115449 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr1_3:40115459-40115478 | Msa0117950:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr1_3:40115460-40115479 | Msa0117950:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr1_3:40115794-40115813 | None:intergenic | 35.0% | |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | - | chr1_3:40115914-40115933 | Msa0117950:intron | 35.0% |
| !!! | CTGCACAATACGTTTTAAAG+CGG | - | chr1_3:40115969-40115988 | Msa0117950:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | - | chr1_3:40116025-40116044 | Msa0117950:CDS | 35.0% | |
| ! | GCATCTGAAATATTTCTCAG+CGG | - | chr1_3:40116136-40116155 | Msa0117950:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr1_3:40116238-40116257 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr1_3:40116365-40116384 | Msa0117950:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr1_3:40116390-40116409 | Msa0117950:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | - | chr1_3:40116409-40116428 | Msa0117950:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr1_3:40113841-40113860 | Msa0117950:three_prime_UTR | 40.0% | |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr1_3:40114150-40114169 | Msa0117950:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr1_3:40114354-40114373 | Msa0117950:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr1_3:40114773-40114792 | Msa0117950:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr1_3:40114777-40114796 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr1_3:40114897-40114916 | Msa0117950:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr1_3:40115038-40115057 | None:intergenic | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr1_3:40115278-40115297 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr1_3:40115318-40115337 | Msa0117950:CDS | 40.0% |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr1_3:40115478-40115497 | Msa0117950:intron | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr1_3:40115487-40115506 | Msa0117950:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr1_3:40115635-40115654 | Msa0117950:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr1_3:40115636-40115655 | Msa0117950:intron | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr1_3:40115758-40115777 | Msa0117950:intron | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr1_3:40115867-40115886 | Msa0117950:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr1_3:40115868-40115887 | Msa0117950:intron | 40.0% | |
| !! | CGCTTTAAAACGTATTGTGC+AGG | + | chr1_3:40115971-40115990 | None:intergenic | 40.0% |
| !!! | CACAATACGTTTTAAAGCGG+TGG | - | chr1_3:40115972-40115991 | Msa0117950:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr1_3:40116013-40116032 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr1_3:40116038-40116057 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr1_3:40116062-40116081 | None:intergenic | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr1_3:40116230-40116249 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr1_3:40116316-40116335 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr1_3:40116378-40116397 | None:intergenic | 40.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr1_3:40114230-40114249 | Msa0117950:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr1_3:40114233-40114252 | Msa0117950:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr1_3:40114291-40114310 | Msa0117950:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr1_3:40114332-40114351 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr1_3:40114659-40114678 | Msa0117950:CDS | 45.0% | |
| ACCATATACACAGACCAGAC+TGG | - | chr1_3:40115041-40115060 | Msa0117950:CDS | 45.0% | |
| ACCAGTCTGGTCTGTGTATA+TGG | + | chr1_3:40115045-40115064 | None:intergenic | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr1_3:40115273-40115292 | Msa0117950:CDS | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr1_3:40115324-40115343 | Msa0117950:CDS | 45.0% |
| AATCGAACACGTGAATGGTC+TGG | + | chr1_3:40115425-40115444 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr1_3:40115537-40115556 | Msa0117950:intron | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr1_3:40115774-40115793 | Msa0117950:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr1_3:40115787-40115806 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr1_3:40115869-40115888 | Msa0117950:intron | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr1_3:40115889-40115908 | None:intergenic | 45.0% | |
| ATTTCTCAGCGGTGTTCTTG+AGG | - | chr1_3:40116147-40116166 | Msa0117950:CDS | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr1_3:40116159-40116178 | Msa0117950:CDS | 45.0% | |
| ! | TTTGGTGCAGTACCAACAGA+TGG | + | chr1_3:40116274-40116293 | None:intergenic | 45.0% |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr1_3:40114156-40114175 | Msa0117950:CDS | 50.0% |
| ACTTCAACAACGCACCAGTC+TGG | + | chr1_3:40115058-40115077 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr1_3:40115109-40115128 | Msa0117950:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr1_3:40115110-40115129 | Msa0117950:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr1_3:40115542-40115561 | None:intergenic | 50.0% | |
| AGACCGCATAAGCTGACTGT+TGG | + | chr1_3:40115543-40115562 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr1_3:40115825-40115844 | Msa0117950:intron | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr1_3:40116111-40116130 | Msa0117950:CDS | 50.0% | |
| TGAGGCAGGGAAAAAGGAAG+AGG | - | chr1_3:40116165-40116184 | Msa0117950:intron | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr1_3:40116259-40116278 | Msa0117950:intron | 50.0% | |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr1_3:40114159-40114178 | Msa0117950:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr1_3:40114237-40114256 | Msa0117950:CDS | 55.0% |
| TCAGCGGTGTTCTTGAGGCA+GGG | - | chr1_3:40116152-40116171 | Msa0117950:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr1_3:40114164-40114183 | Msa0117950:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr1_3:40116114-40116133 | Msa0117950:CDS | 60.0% | |
| CTCAGCGGTGTTCTTGAGGC+AGG | - | chr1_3:40116151-40116170 | Msa0117950:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 40113821 | 40116578 | 40113821 | ID=Msa0117950;Name=Msa0117950 |
| chr1_3 | mRNA | 40113821 | 40116578 | 40113821 | ID=Msa0117950-mRNA-1;Parent=Msa0117950;Name=Msa0117950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.33|1|1|1|3|152|681 |
| chr1_3 | exon | 40113821 | 40115492 | 40113821 | ID=Msa0117950-mRNA-1:exon:12266;Parent=Msa0117950-mRNA-1 |
| chr1_3 | exon | 40115937 | 40116180 | 40115937 | ID=Msa0117950-mRNA-1:exon:12265;Parent=Msa0117950-mRNA-1 |
| chr1_3 | exon | 40116297 | 40116578 | 40116297 | ID=Msa0117950-mRNA-1:exon:12264;Parent=Msa0117950-mRNA-1 |
| chr1_3 | CDS | 40116297 | 40116578 | 40116297 | ID=Msa0117950-mRNA-1:cds;Parent=Msa0117950-mRNA-1 |
| chr1_3 | CDS | 40115937 | 40116180 | 40115937 | ID=Msa0117950-mRNA-1:cds;Parent=Msa0117950-mRNA-1 |
| chr1_3 | CDS | 40113973 | 40115492 | 40113973 | ID=Msa0117950-mRNA-1:cds;Parent=Msa0117950-mRNA-1 |
| chr1_3 | three_prime_UTR | 40113821 | 40113972 | 40113821 | ID=Msa0117950-mRNA-1:three_prime_utr;Parent=Msa0117950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
