AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118210 MtrunA17_Chr1g0175201 96.928 293 6 1 1 290 1 293 0.0 579
Msa0118210 MtrunA17_Chr7g0258611 70.395 304 70 9 1 287 1 301 9.83e-136 385
Msa0118210 MtrunA17_Chr1g0213721 59.533 257 91 6 43 290 6 258 3.18e-99 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118210 AT3G12130.1 50.498 301 84 9 1 290 1 247 2.71e-81 246
Msa0118210 AT5G06770.6 50.935 214 89 7 87 290 10 217 9.54e-58 184
Msa0118210 AT5G06770.6 71.698 53 15 0 20 72 4 56 7.96e-21 89.0
Msa0118210 AT5G06770.1 50.935 214 89 7 87 290 32 239 1.30e-57 185
Msa0118210 AT5G06770.1 66.667 78 20 2 1 72 1 78 2.96e-28 109
Msa0118210 AT5G06770.3 51.244 201 82 7 100 290 18 212 3.04e-54 176
Msa0118210 AT5G06770.2 51.244 201 82 7 100 290 18 212 3.04e-54 176
Msa0118210 AT5G06770.4 51.244 201 82 7 100 290 18 212 3.04e-54 176
Msa0118210 AT3G12130.2 62.658 158 51 4 139 290 20 175 3.68e-53 171
Msa0118210 AT5G06770.5 58.667 150 57 4 141 290 23 167 1.59e-50 164

Find 129 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCAATGTTTCTAAGATT+TGG 0.218015 1_3:-40491258 None:intergenic
TCTGCTGAAGGCTGCAAATT+TGG 0.233846 1_3:+40490952 Msa0118210:CDS
GGAGCACCCGGGGTGGATTT+AGG 0.239916 1_3:-40491360 None:intergenic
TATCTCTTCTATCTAGGGTT+AGG 0.257191 1_3:+40487819 Msa0118210:five_prime_UTR
TTGGTCTTGATGTTTCTTCC+AGG 0.287578 1_3:-40491405 None:intergenic
ATGTTTCTTCCAGGTGCGGC+TGG 0.289209 1_3:-40491396 None:intergenic
CCCATTCACCATGGGCAAAA+TGG 0.307326 1_3:-40490984 None:intergenic
GTTCAATGTTTCTAAGATTT+GGG 0.309393 1_3:-40491257 None:intergenic
GATCAGTGTAGAAGCTTCTT+TGG 0.311263 1_3:+40491143 Msa0118210:CDS
TCATCCTTACGGTTAGGGTT+AGG 0.315619 1_3:+40487776 Msa0118210:five_prime_UTR
TAAGATTTGGGTCAGATTCA+TGG 0.329032 1_3:-40491245 None:intergenic
CAGGTTTAAGATTCATCATC+TGG 0.330164 1_3:-40490843 None:intergenic
AGGGTTGATTCTGCTGTTAA+TGG 0.335856 1_3:+40487922 Msa0118210:CDS
ACTGATCTTGGCAGTGGAAT+TGG 0.339065 1_3:-40491127 None:intergenic
GCTCTCTATCTCTTCTATCT+AGG 0.344285 1_3:+40487813 Msa0118210:five_prime_UTR
GCTAAAGGATCCTGCACATT+TGG 0.348312 1_3:+40491444 Msa0118210:CDS
CCCTCGTTTGCGGGCATCCA+TGG 0.349169 1_3:-40487899 None:intergenic
CACTTCTCACATCATGTTCC+CGG 0.349238 1_3:+40490802 Msa0118210:CDS
TTCAATTCATCCTTACGGTT+AGG 0.350116 1_3:+40487770 Msa0118210:five_prime_UTR
GGTCGAGTTGAGGCTCCTTC+TGG 0.361759 1_3:+40491081 Msa0118210:CDS
ATCAACCCTCCCTCGTTTGC+GGG 0.367443 1_3:-40487908 None:intergenic
TTGAAAATTTGACTCCTGTT+TGG 0.371380 1_3:-40491215 None:intergenic
TTATTGTTGTTTGTTGCAAA+TGG 0.376679 1_3:+40491698 Msa0118210:three_prime_UTR
CATCCTTACGGTTAGGGTTA+GGG 0.379351 1_3:+40487777 Msa0118210:five_prime_UTR
TCAATTCATCCTTACGGTTA+GGG 0.382082 1_3:+40487771 Msa0118210:five_prime_UTR
TCTTTGGCTGGAGCTATCAT+TGG 0.389153 1_3:+40491159 Msa0118210:CDS
TGAATTGAACGGAGGAAGAT+GGG 0.390001 1_3:-40487756 None:intergenic
ATCTCTTCTATCTAGGGTTA+GGG 0.390884 1_3:+40487820 Msa0118210:five_prime_UTR
GTTGAGGCTCCTTCTGGTCT+AGG 0.393390 1_3:+40491087 Msa0118210:CDS
AGCATTGCTGGCTGTCCATT+TGG 0.402746 1_3:+40490769 Msa0118210:intron
TCCACCCCGGGTGCTCCTGC+TGG 0.410973 1_3:+40491366 Msa0118210:CDS
GCACCCGGGGTGGATTTAGG+TGG 0.419235 1_3:-40491357 None:intergenic
CTCCGTTCAATTCATCCTTA+CGG 0.421055 1_3:+40487765 Msa0118210:five_prime_UTR
GGTGGGGCGGCAACATTTCT+AGG 0.421558 1_3:-40490874 None:intergenic
GGTCTAGGCGGTACTAGCTT+TGG 0.431440 1_3:+40491102 Msa0118210:CDS
AGAAGCTTCTACACTGATCT+TGG 0.443492 1_3:-40491139 None:intergenic
TATTGTTGTTTGTTGCAAAT+GGG 0.444298 1_3:+40491699 Msa0118210:three_prime_UTR
ATGAATTGAACGGAGGAAGA+TGG 0.445228 1_3:-40487757 None:intergenic
AGCAAAATTCTCACACAGCT+TGG 0.448378 1_3:-40491424 None:intergenic
GCCGCTGAATTGCGAAAGAT+AGG 0.451682 1_3:+40491492 Msa0118210:CDS
GGTGGTGGCCCAGCCGCACC+TGG 0.454343 1_3:+40491387 Msa0118210:CDS
GCAACAGAAATGGACTCAAC+TGG 0.458170 1_3:+40488951 Msa0118210:intron
CTTAGAAACATTGAACTTGA+GGG 0.465557 1_3:+40491264 Msa0118210:CDS
CCACCACCAGCAGGAGCACC+CGG 0.465994 1_3:-40491372 None:intergenic
GGCATACGACCAACATTTGT+AGG 0.466912 1_3:-40491057 None:intergenic
ACAAATGTTGGTCGTATGCC+TGG 0.469504 1_3:+40491060 Msa0118210:CDS
GCGGCTGGGCCACCACCAGC+AGG 0.473223 1_3:-40491381 None:intergenic
TATTATTAATCTTATTGTTG+TGG 0.473354 1_3:+40491598 Msa0118210:three_prime_UTR
CTCTCTATCTCTTCTATCTA+GGG 0.474884 1_3:+40487814 Msa0118210:five_prime_UTR
TTCGCAATTCAGCGGCTCCA+TGG 0.475467 1_3:-40491485 None:intergenic
AGTGTAGAAGCTTCTTTGGC+TGG 0.476113 1_3:+40491147 Msa0118210:CDS
CCAACATTTGTAGGTGCCAT+TGG 0.476227 1_3:-40491048 None:intergenic
ATTGTGAAAGCCATATATAA+AGG 0.476641 1_3:-40491749 None:intergenic
AAGCAGATATGTCGCCAAAC+AGG 0.477279 1_3:+40491201 Msa0118210:CDS
AATCAACCCTCCCTCGTTTG+CGG 0.479400 1_3:-40487909 None:intergenic
TGTTTCTTCCAGGTGCGGCT+GGG 0.483249 1_3:-40491395 None:intergenic
TCATCAACTGATGGAGCAAA+AGG 0.487156 1_3:-40491018 None:intergenic
AAGTGACAACCCTCACCAAA+TGG 0.487932 1_3:-40490784 None:intergenic
TCGCAATTCAGCGGCTCCAT+GGG 0.491844 1_3:-40491484 None:intergenic
GTCTAAAATTGACCTTGGTC+AGG 0.492004 1_3:+40491516 Msa0118210:exon
CCGGGTGCTCCTGCTGGTGG+TGG 0.502346 1_3:+40491372 Msa0118210:CDS
CACCCGGGGTGGATTTAGGT+GGG 0.506274 1_3:-40491356 None:intergenic
TGCTGGCTGTCCATTTGGTG+AGG 0.513418 1_3:+40490774 Msa0118210:CDS
GAATTGAACGGAGGAAGATG+GGG 0.517406 1_3:-40487755 None:intergenic
GGCTGGAGCTATCATTGGAA+AGG 0.517932 1_3:+40491164 Msa0118210:CDS
CCATTGTTAGAGACTGGTGG+TGG 0.518004 1_3:-40490892 None:intergenic
ACATTTCTAGGAGGTGCAGC+AGG 0.522238 1_3:-40490862 None:intergenic
GCTGGCTGTCCATTTGGTGA+GGG 0.526668 1_3:+40490775 Msa0118210:CDS
TCTTAGAAACATTGAACTTG+AGG 0.528176 1_3:+40491263 Msa0118210:CDS
ACATCTTTCTCCAAATGTGC+AGG 0.531941 1_3:-40491454 None:intergenic
AGGAGTAGATCGAGATCCAA+AGG 0.536150 1_3:-40487865 None:intergenic
GCTGGAGCTATCATTGGAAA+GGG 0.536163 1_3:+40491165 Msa0118210:CDS
ACCGAGTTCCCATTCACCAT+GGG 0.537718 1_3:-40490992 None:intergenic
GGCAACGGCATTATAACCAC+CGG 0.537881 1_3:-40490821 None:intergenic
GAAGAGATAGAGAGCTTGAG+AGG 0.541046 1_3:-40487805 None:intergenic
GCCCATGGTGAATGGGAACT+CGG 0.546163 1_3:+40490991 Msa0118210:CDS
AACAAGTTTAATTCTGCTGA+AGG 0.547801 1_3:+40490940 Msa0118210:CDS
AACAATAGTAGTAATAGCCC+TGG 0.548540 1_3:-40491563 None:intergenic
GCCCCACCTAAATCCACCCC+GGG 0.548715 1_3:+40491354 Msa0118210:CDS
CATCCATGGTAGTAAGAGAA+AGG 0.551749 1_3:-40487885 None:intergenic
ACCCCGGGTGCTCCTGCTGG+TGG 0.555134 1_3:+40491369 Msa0118210:CDS
GCAGAACCATTGTTAGAGAC+TGG 0.559543 1_3:-40490898 None:intergenic
TCCTATCTTTCGCAATTCAG+CGG 0.559614 1_3:-40491493 None:intergenic
CTAGTACCGCCTAGACCAGA+AGG 0.560068 1_3:-40491096 None:intergenic
TGGATGCCCGCAAACGAGGG+AGG 0.563890 1_3:+40487902 Msa0118210:CDS
TGCCCCACCTAAATCCACCC+CGG 0.566710 1_3:+40491353 Msa0118210:CDS
AAGATTCATCATCTGGGCAA+CGG 0.568550 1_3:-40490836 None:intergenic
GGACGGTGATCATCAACTGA+TGG 0.568940 1_3:-40491027 None:intergenic
CCAATGGCACCTACAAATGT+TGG 0.569357 1_3:+40491048 Msa0118210:CDS
TTCTACACTGATCTTGGCAG+TGG 0.569888 1_3:-40491133 None:intergenic
GATAGAAGAGAAGAGAAGAA+AGG 0.570911 1_3:-40487703 None:intergenic
AATTGAACGGAGGAAGATGG+GGG 0.573971 1_3:-40487754 None:intergenic
ACCATGGATGCCCGCAAACG+AGG 0.575371 1_3:+40487898 Msa0118210:exon
CATTTGTAGGTGCCATTGGA+CGG 0.575412 1_3:-40491044 None:intergenic
ACCCGGGGTGGATTTAGGTG+GGG 0.576393 1_3:-40491355 None:intergenic
ACCACCAGCAGGAGCACCCG+GGG 0.577197 1_3:-40491370 None:intergenic
ACTCCTTTCTCTTACTACCA+TGG 0.578926 1_3:+40487882 Msa0118210:exon
CACCACCAGCAGGAGCACCC+GGG 0.580328 1_3:-40491371 None:intergenic
GGATGCCCGCAAACGAGGGA+GGG 0.582958 1_3:+40487903 Msa0118210:CDS
CCATGGATGCCCGCAAACGA+GGG 0.583791 1_3:+40487899 Msa0118210:exon
GAAAGATGTCACTTTGCCCA+TGG 0.584192 1_3:+40491468 Msa0118210:CDS
CTTGATGTTTCTTCCAGGTG+CGG 0.585145 1_3:-40491400 None:intergenic
GAAAGAGATGAGAGAAGCGA+AGG 0.588541 1_3:-40487727 None:intergenic
GAAATGGACTCAACTGGTGT+AGG 0.590424 1_3:+40488957 Msa0118210:intron
AGGTTTAAGATTCATCATCT+GGG 0.591191 1_3:-40490842 None:intergenic
AATTAAACTTGTTACATATG+CGG 0.591258 1_3:-40490930 None:intergenic
CCACCACCAGTCTCTAACAA+TGG 0.591961 1_3:+40490892 Msa0118210:CDS
TACCGAGTTCCCATTCACCA+TGG 0.592664 1_3:-40490993 None:intergenic
TAGGAGTCTAAAATTGACCT+TGG 0.593457 1_3:+40491511 Msa0118210:exon
TGTGGATTGCTACTTAGTAG+TGG 0.595136 1_3:+40491616 Msa0118210:three_prime_UTR
AGTTGATGATCACCGTCCAA+TGG 0.605823 1_3:+40491032 Msa0118210:CDS
AAACCCTAACCCTAACCGTA+AGG 0.606064 1_3:-40487780 None:intergenic
ATTGTTAGAGACTGGTGGTG+GGG 0.606388 1_3:-40490890 None:intergenic
GAAGGAGCCTCAACTCGACC+AGG 0.607588 1_3:-40491078 None:intergenic
TCGTATGCCTGGTCGAGTTG+AGG 0.614018 1_3:+40491071 Msa0118210:CDS
GGAGCTATCATTGGAAAGGG+TGG 0.621933 1_3:+40491168 Msa0118210:CDS
GTTAGAGACTGGTGGTGGGG+CGG 0.623695 1_3:-40490887 None:intergenic
ACCAGCAGGAGCACCCGGGG+TGG 0.624936 1_3:-40491367 None:intergenic
AACCGTAAGGATGAATTGAA+CGG 0.634433 1_3:-40487767 None:intergenic
CATTGTTAGAGACTGGTGGT+GGG 0.635968 1_3:-40490891 None:intergenic
AATTGCACAAGCAAGTAACA+TGG 0.648235 1_3:+40491299 Msa0118210:CDS
TCCGTCAAGAAAACCAAACA+AGG 0.648477 1_3:+40487946 Msa0118210:CDS
GCAACGGCATTATAACCACC+GGG 0.654418 1_3:-40490820 None:intergenic
TTCTCACATCATGTTCCCGG+TGG 0.667160 1_3:+40490805 Msa0118210:CDS
GGGGCGGCAACATTTCTAGG+AGG 0.676956 1_3:-40490871 None:intergenic
GAACCATTGTTAGAGACTGG+TGG 0.695821 1_3:-40490895 None:intergenic
GAGGCTCCTTCTGGTCTAGG+CGG 0.707296 1_3:+40491090 Msa0118210:CDS
CGTAAGGATGAATTGAACGG+AGG 0.709166 1_3:-40487764 None:intergenic
CAAAGCAGCAAAAGACACTG+AGG 0.763743 1_3:-40487665 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAACAAAATTTAAGAT+TGG + chr1_3:40487619-40487638 Msa0118210:five_prime_UTR 10.0%
!!! TATTTTTTAAATTTAGTTGT+TGG + chr1_3:40488114-40488133 Msa0118210:intron 10.0%
!! TACTACATTTAATAATTTAG+AGG + chr1_3:40488897-40488916 Msa0118210:intron 15.0%
!! TTCAAAATATTTGTTTAGAT+AGG - chr1_3:40489029-40489048 None:intergenic 15.0%
!! CTATTTACAAGATAATAAAA+TGG + chr1_3:40489372-40489391 Msa0118210:intron 15.0%
!!! AGATTTTAAAAATTACAATC+TGG - chr1_3:40489579-40489598 None:intergenic 15.0%
!!! TTTTCATAACAATAATACTT+TGG + chr1_3:40490698-40490717 Msa0118210:intron 15.0%
!! TATTATTAATCTTATTGTTG+TGG + chr1_3:40491598-40491617 Msa0118210:three_prime_UTR 15.0%
!!! TTAAACAGTTTTTTAAGTTC+AGG - chr1_3:40488507-40488526 None:intergenic 20.0%
!!! TTCTTTTAGATAAAGGTAAT+TGG - chr1_3:40488678-40488697 None:intergenic 20.0%
!!! TTTAGGTTTCTTTTAGATAA+AGG - chr1_3:40488685-40488704 None:intergenic 20.0%
!! ATCAAATTGTAACAGAATAA+TGG + chr1_3:40489152-40489171 Msa0118210:intron 20.0%
!! ACAGAATAATGGTTTATTAA+TGG + chr1_3:40489163-40489182 Msa0118210:intron 20.0%
!! TTACAAGATAATAAAATGGT+TGG + chr1_3:40489376-40489395 Msa0118210:intron 20.0%
!! GTTTAGTCAATTAAGAAATA+CGG + chr1_3:40489751-40489770 Msa0118210:intron 20.0%
!! TTTAATTGATGTAACATAAC+AGG - chr1_3:40490116-40490135 None:intergenic 20.0%
!! ATATTATAGGCAATGATATA+TGG + chr1_3:40490258-40490277 Msa0118210:intron 20.0%
!!! TTATTTTGATAGTAGTTAAC+AGG + chr1_3:40490649-40490668 Msa0118210:intron 20.0%
!!! AATTAAACTTGTTACATATG+CGG - chr1_3:40490933-40490952 None:intergenic 20.0%
!!! TACTACTTTTCCTTTATATA+TGG + chr1_3:40491739-40491758 Msa0118210:three_prime_UTR 20.0%
! TTTAGTGTAATTACAAGTGT+CGG + chr1_3:40488381-40488400 Msa0118210:intron 25.0%
!!! CAATTACGGTTTAGAATTTT+GGG - chr1_3:40488708-40488727 None:intergenic 25.0%
!! TTAATGTTTTGCAACAGAAA+TGG + chr1_3:40488941-40488960 Msa0118210:intron 25.0%
! TAATGGTTTATTAATGGAGT+TGG + chr1_3:40489169-40489188 Msa0118210:intron 25.0%
! TTTATTAATGGAGTTGGAAA+AGG + chr1_3:40489175-40489194 Msa0118210:intron 25.0%
! AGCAAGATTTACAGTAATTA+AGG - chr1_3:40489282-40489301 None:intergenic 25.0%
! GCTGATAAGTCATTATTAAA+TGG - chr1_3:40489307-40489326 None:intergenic 25.0%
! ACTACTTAGTTGAAGTAATA+GGG - chr1_3:40489483-40489502 None:intergenic 25.0%
! AACTACTTAGTTGAAGTAAT+AGG - chr1_3:40489484-40489503 None:intergenic 25.0%
! TACAAAATTTACAGTCGTAA+AGG - chr1_3:40489676-40489695 None:intergenic 25.0%
! ATTAAGAAATACGGAATTCT+TGG + chr1_3:40489760-40489779 Msa0118210:intron 25.0%
!!! TTCTTTCCTTTAGTTTTTCT+TGG + chr1_3:40489931-40489950 Msa0118210:intron 25.0%
!!! TCAACCATCTTTTTTTCAAT+AGG + chr1_3:40490024-40490043 Msa0118210:intron 25.0%
! ATGTTAGTATTAAAGAGAGT+TGG - chr1_3:40490057-40490076 None:intergenic 25.0%
! ATATCAATGGCTATAACAAT+TGG - chr1_3:40490380-40490399 None:intergenic 25.0%
!! GAATGTTATTTGTTAGCTTA+TGG - chr1_3:40490407-40490426 None:intergenic 25.0%
! ACATTCCTATATTCTTCTTA+AGG + chr1_3:40490603-40490622 Msa0118210:intron 25.0%
! TAGTTAACAGGAAATGAAAA+GGG + chr1_3:40490661-40490680 Msa0118210:intron 25.0%
!!! GTTCAATGTTTCTAAGATTT+GGG - chr1_3:40491260-40491279 None:intergenic 25.0%
!!! AGTTCAATGTTTCTAAGATT+TGG - chr1_3:40491261-40491280 None:intergenic 25.0%
!!! TTATTGTTGTTTGTTGCAAA+TGG + chr1_3:40491698-40491717 Msa0118210:three_prime_UTR 25.0%
!!! TATTGTTGTTTGTTGCAAAT+GGG + chr1_3:40491699-40491718 Msa0118210:three_prime_UTR 25.0%
!!! TGCTGCTTTGTGTTTTTTTT+TGG + chr1_3:40487678-40487697 Msa0118210:five_prime_UTR 30.0%
!!! TTCACTTTTTCTTCTTCCTT+TGG + chr1_3:40487849-40487868 Msa0118210:five_prime_UTR 30.0%
TCTGTGTTCTTGAATTTGAA+AGG + chr1_3:40488012-40488031 Msa0118210:intron 30.0%
TTGTTGGATTCATGTTTGTT+TGG + chr1_3:40488130-40488149 Msa0118210:intron 30.0%
! AGTTCAACTAAAGAAGCATA+TGG - chr1_3:40488291-40488310 None:intergenic 30.0%
! TGTATATGGTGTTTAAAACG+AGG - chr1_3:40488644-40488663 None:intergenic 30.0%
!! TGGCTTTGATTTGATGTATA+TGG - chr1_3:40488658-40488677 None:intergenic 30.0%
!! GCAATTACGGTTTAGAATTT+TGG - chr1_3:40488709-40488728 None:intergenic 30.0%
! TTTAGGATGATTGCTTCAAT+TGG + chr1_3:40488760-40488779 Msa0118210:intron 30.0%
AGATTAGAACCTGAAAAACT+TGG - chr1_3:40489003-40489022 None:intergenic 30.0%
ATCTAATTCTGCATCTTAAC+TGG + chr1_3:40489087-40489106 Msa0118210:intron 30.0%
TCTAATTCTGCATCTTAACT+GGG + chr1_3:40489088-40489107 Msa0118210:intron 30.0%
! GGAAAAGGATAATAATTTGC+AGG + chr1_3:40489190-40489209 Msa0118210:intron 30.0%
TAAATAGCTTACCAATTGGA+AGG - chr1_3:40489359-40489378 None:intergenic 30.0%
CTTGTAAATAGCTTACCAAT+TGG - chr1_3:40489363-40489382 None:intergenic 30.0%
GATAATAAAATGGTTGGATC+AGG + chr1_3:40489382-40489401 Msa0118210:intron 30.0%
TACTTAGTTGAAGTAATAGG+GGG - chr1_3:40489481-40489500 None:intergenic 30.0%
CTACTTAGTTGAAGTAATAG+GGG - chr1_3:40489482-40489501 None:intergenic 30.0%
!! AAGTAGTTCTATCAAGCTTT+TGG + chr1_3:40489496-40489515 Msa0118210:intron 30.0%
! AGCTTTTGGTAAAACATTAG+AGG + chr1_3:40489510-40489529 Msa0118210:intron 30.0%
TTGGTAGAAGGTTCAATATT+AGG + chr1_3:40489779-40489798 Msa0118210:intron 30.0%
!! GTGTTTTGTTCACATAAATC+TGG + chr1_3:40489821-40489840 Msa0118210:intron 30.0%
GAAAAACTAAAGGAAAGAAC+AGG - chr1_3:40489930-40489949 None:intergenic 30.0%
AGCACCTATTGAAAAAAAGA+TGG - chr1_3:40490031-40490050 None:intergenic 30.0%
TTCATCAACTAAAATCCCAT+TGG + chr1_3:40490201-40490220 Msa0118210:intron 30.0%
CATCTCTTGTAGCATATTAT+AGG + chr1_3:40490245-40490264 Msa0118210:intron 30.0%
!!! ACAATTGGTTTTCTTTCAGA+GGG - chr1_3:40490365-40490384 None:intergenic 30.0%
!!! AACAATTGGTTTTCTTTCAG+AGG - chr1_3:40490366-40490385 None:intergenic 30.0%
TTGTTATAGCCATTGATATG+TGG + chr1_3:40490381-40490400 Msa0118210:intron 30.0%
TTATAACCAGTCAGATAATG+CGG - chr1_3:40490449-40490468 None:intergenic 30.0%
TTATAAGCCAACATAGAGTT+GGG + chr1_3:40490463-40490482 Msa0118210:intron 30.0%
TTCCTATATTCTTCTTAAGG+TGG + chr1_3:40490606-40490625 Msa0118210:intron 30.0%
TTCCACCTTAAGAAGAATAT+AGG - chr1_3:40490611-40490630 None:intergenic 30.0%
GTAGTTAACAGGAAATGAAA+AGG + chr1_3:40490660-40490679 Msa0118210:intron 30.0%
AGTTAACAGGAAATGAAAAG+GGG + chr1_3:40490662-40490681 Msa0118210:intron 30.0%
TGCAAAACAAGAAAACATCA+TGG - chr1_3:40490750-40490769 None:intergenic 30.0%
! AGGTTTAAGATTCATCATCT+GGG - chr1_3:40490845-40490864 None:intergenic 30.0%
AACAAGTTTAATTCTGCTGA+AGG + chr1_3:40490940-40490959 Msa0118210:CDS 30.0%
TTGAAAATTTGACTCCTGTT+TGG - chr1_3:40491218-40491237 None:intergenic 30.0%
TCTTAGAAACATTGAACTTG+AGG + chr1_3:40491263-40491282 Msa0118210:CDS 30.0%
CTTAGAAACATTGAACTTGA+GGG + chr1_3:40491264-40491283 Msa0118210:CDS 30.0%
! TTTTTCTTCTTTTGTTAGCC+AGG + chr1_3:40491545-40491564 Msa0118210:three_prime_UTR 30.0%
! TTTTCTTCTTTTGTTAGCCA+GGG + chr1_3:40491546-40491565 Msa0118210:three_prime_UTR 30.0%
GATAGAAGAGAAGAGAAGAA+AGG - chr1_3:40487706-40487725 None:intergenic 35.0%
AACCGTAAGGATGAATTGAA+CGG - chr1_3:40487770-40487789 None:intergenic 35.0%
TTCAATTCATCCTTACGGTT+AGG + chr1_3:40487770-40487789 Msa0118210:five_prime_UTR 35.0%
TCAATTCATCCTTACGGTTA+GGG + chr1_3:40487771-40487790 Msa0118210:five_prime_UTR 35.0%
CTCTCTATCTCTTCTATCTA+GGG + chr1_3:40487814-40487833 Msa0118210:five_prime_UTR 35.0%
! TATCTCTTCTATCTAGGGTT+AGG + chr1_3:40487819-40487838 Msa0118210:five_prime_UTR 35.0%
! ATCTCTTCTATCTAGGGTTA+GGG + chr1_3:40487820-40487839 Msa0118210:five_prime_UTR 35.0%
!!! ACCTTGTTTGGTTTTCTTGA+CGG - chr1_3:40487950-40487969 None:intergenic 35.0%
GGTGAAAAAGAAACCTTGTT+TGG - chr1_3:40487962-40487981 None:intergenic 35.0%
TTATTGCTCTATGCTTGTCA+TGG + chr1_3:40488251-40488270 Msa0118210:intron 35.0%
TGAACTATGAAGCACAGATA+CGG + chr1_3:40488305-40488324 Msa0118210:intron 35.0%
!!! CGGTTTAGAATTTTGGGTTT+AGG - chr1_3:40488702-40488721 None:intergenic 35.0%
ACACAACTCTGTTGCAATTA+CGG - chr1_3:40488722-40488741 None:intergenic 35.0%
!! TCAGAGAGTGTTCAAAGTTT+AGG + chr1_3:40488743-40488762 Msa0118210:intron 35.0%
CTATATCAACCTTCAACTCA+GGG - chr1_3:40488813-40488832 None:intergenic 35.0%
ACTATATCAACCTTCAACTC+AGG - chr1_3:40488814-40488833 None:intergenic 35.0%
AACCTGAAAAACTTGGTACA+AGG - chr1_3:40488996-40489015 None:intergenic 35.0%
! GGGTATTCTAAGCTTTATAC+AGG + chr1_3:40489108-40489127 Msa0118210:intron 35.0%
TTTAGTGTTCCCATTGTCAT+GGG - chr1_3:40489220-40489239 None:intergenic 35.0%
ATTTAGTGTTCCCATTGTCA+TGG - chr1_3:40489221-40489240 None:intergenic 35.0%
TTAGACACAGACGCATAATT+TGG - chr1_3:40489416-40489435 None:intergenic 35.0%
GCATAAACAAAGTTCTCTCT+TGG - chr1_3:40489452-40489471 None:intergenic 35.0%
AAATTACAATCTGGTGAGAG+CGG - chr1_3:40489570-40489589 None:intergenic 35.0%
AACACAGAACAAGCAATCAA+AGG - chr1_3:40489699-40489718 None:intergenic 35.0%
AATACGGAATTCTTGGTAGA+AGG + chr1_3:40489767-40489786 Msa0118210:intron 35.0%
GAACAACTAAAACACTGCAA+TGG - chr1_3:40489867-40489886 None:intergenic 35.0%
GGAAGACCAAGAAAAACTAA+AGG - chr1_3:40489940-40489959 None:intergenic 35.0%
! AATCTAGACTTAGCTGGTTT+GGG - chr1_3:40490005-40490024 None:intergenic 35.0%
AGATGAGAAAAACCAATGGT+AGG - chr1_3:40490230-40490249 None:intergenic 35.0%
CAAGAGATGAGAAAAACCAA+TGG - chr1_3:40490234-40490253 None:intergenic 35.0%
ATAGGCAATGATATATGGTG+TGG + chr1_3:40490263-40490282 Msa0118210:intron 35.0%
GTAGTGTGTTATCTAACCTT+TGG + chr1_3:40490308-40490327 Msa0118210:intron 35.0%
! AACCTTTGGTGGATATGATA+TGG + chr1_3:40490322-40490341 Msa0118210:intron 35.0%
AACCATATCATATCCACCAA+AGG - chr1_3:40490327-40490346 None:intergenic 35.0%
GTTATAAGCCAACATAGAGT+TGG + chr1_3:40490462-40490481 Msa0118210:intron 35.0%
! CAGGTTTAAGATTCATCATC+TGG - chr1_3:40490846-40490865 None:intergenic 35.0%
TAAGATTTGGGTCAGATTCA+TGG - chr1_3:40491248-40491267 None:intergenic 35.0%
AATTGCACAAGCAAGTAACA+TGG + chr1_3:40491299-40491318 Msa0118210:CDS 35.0%
! CTGTGTGAGAATTTTGCTAA+AGG + chr1_3:40491429-40491448 Msa0118210:CDS 35.0%
! TAGGAGTCTAAAATTGACCT+TGG + chr1_3:40491511-40491530 Msa0118210:exon 35.0%
AACAATAGTAGTAATAGCCC+TGG - chr1_3:40491566-40491585 None:intergenic 35.0%
TGAATTGAACGGAGGAAGAT+GGG - chr1_3:40487759-40487778 None:intergenic 40.0%
ATGAATTGAACGGAGGAAGA+TGG - chr1_3:40487760-40487779 None:intergenic 40.0%
CTCCGTTCAATTCATCCTTA+CGG + chr1_3:40487765-40487784 Msa0118210:five_prime_UTR 40.0%
GCTCTCTATCTCTTCTATCT+AGG + chr1_3:40487813-40487832 Msa0118210:five_prime_UTR 40.0%
ACTCCTTTCTCTTACTACCA+TGG + chr1_3:40487882-40487901 Msa0118210:exon 40.0%
CATCCATGGTAGTAAGAGAA+AGG - chr1_3:40487888-40487907 None:intergenic 40.0%
! AGGGTTGATTCTGCTGTTAA+TGG + chr1_3:40487922-40487941 Msa0118210:CDS 40.0%
TCCGTCAAGAAAACCAAACA+AGG + chr1_3:40487946-40487965 Msa0118210:CDS 40.0%
TTGCTTCAACCTATGAAGCA+TGG - chr1_3:40488454-40488473 None:intergenic 40.0%
TTCGACAACAGAGTTTCAGA+GGG - chr1_3:40488536-40488555 None:intergenic 40.0%
!! TCACTGGAATTTGCTATCGA+TGG + chr1_3:40488560-40488579 Msa0118210:intron 40.0%
! ATTGCTTCAATTGGAAGCAC+AGG + chr1_3:40488769-40488788 Msa0118210:intron 40.0%
!! AGCCTTGTACCAAGTTTTTC+AGG + chr1_3:40488991-40489010 Msa0118210:CDS 40.0%
TAGCTTACCAATTGGAAGGT+GGG - chr1_3:40489355-40489374 None:intergenic 40.0%
ATAGCTTACCAATTGGAAGG+TGG - chr1_3:40489356-40489375 None:intergenic 40.0%
TGCTTGTTCTGTGTTTACGT+AGG + chr1_3:40489704-40489723 Msa0118210:intron 40.0%
GAATCTAGACTTAGCTGGTT+TGG - chr1_3:40490006-40490025 None:intergenic 40.0%
TGGTTGAATCTAGACTTAGC+TGG - chr1_3:40490011-40490030 None:intergenic 40.0%
AGACTTCTGCATCATGTACA+AGG + chr1_3:40490135-40490154 Msa0118210:intron 40.0%
GACTTCTGCATCATGTACAA+GGG + chr1_3:40490136-40490155 Msa0118210:intron 40.0%
GATGAAACCAGATCAACTCA+TGG - chr1_3:40490187-40490206 None:intergenic 40.0%
ACCAATGGTAGGTTTCCAAT+GGG - chr1_3:40490219-40490238 None:intergenic 40.0%
AACCAATGGTAGGTTTCCAA+TGG - chr1_3:40490220-40490239 None:intergenic 40.0%
GTGTGTTATCTAACCTTTGG+TGG + chr1_3:40490311-40490330 Msa0118210:intron 40.0%
!! TTGGTTTTCTTTCAGAGGGA+GGG - chr1_3:40490361-40490380 None:intergenic 40.0%
!!! ATTGGTTTTCTTTCAGAGGG+AGG - chr1_3:40490362-40490381 None:intergenic 40.0%
AGCTTATGGCCACATATCAA+TGG - chr1_3:40490393-40490412 None:intergenic 40.0%
CGGATCAGAACAATGACTAT+CGG - chr1_3:40490429-40490448 None:intergenic 40.0%
!!! TTCTTGTTTTGCAGCATTGC+TGG + chr1_3:40490757-40490776 Msa0118210:intron 40.0%
AAGATTCATCATCTGGGCAA+CGG - chr1_3:40490839-40490858 None:intergenic 40.0%
TCATCAACTGATGGAGCAAA+AGG - chr1_3:40491021-40491040 None:intergenic 40.0%
AGAAGCTTCTACACTGATCT+TGG - chr1_3:40491142-40491161 None:intergenic 40.0%
GATCAGTGTAGAAGCTTCTT+TGG + chr1_3:40491143-40491162 Msa0118210:CDS 40.0%
!! TTGGTCTTGATGTTTCTTCC+AGG - chr1_3:40491408-40491427 None:intergenic 40.0%
AGCAAAATTCTCACACAGCT+TGG - chr1_3:40491427-40491446 None:intergenic 40.0%
ACATCTTTCTCCAAATGTGC+AGG - chr1_3:40491457-40491476 None:intergenic 40.0%
TCCTATCTTTCGCAATTCAG+CGG - chr1_3:40491496-40491515 None:intergenic 40.0%
! GTCTAAAATTGACCTTGGTC+AGG + chr1_3:40491516-40491535 Msa0118210:exon 40.0%
! GAAAAAAGTACACCTGACCA+AGG - chr1_3:40491531-40491550 None:intergenic 40.0%
! TGTGGATTGCTACTTAGTAG+TGG + chr1_3:40491616-40491635 Msa0118210:three_prime_UTR 40.0%
CAAAGCAGCAAAAGACACTG+AGG - chr1_3:40487668-40487687 None:intergenic 45.0%
GAAAGAGATGAGAGAAGCGA+AGG - chr1_3:40487730-40487749 None:intergenic 45.0%
AATTGAACGGAGGAAGATGG+GGG - chr1_3:40487757-40487776 None:intergenic 45.0%
GAATTGAACGGAGGAAGATG+GGG - chr1_3:40487758-40487777 None:intergenic 45.0%
CGTAAGGATGAATTGAACGG+AGG - chr1_3:40487767-40487786 None:intergenic 45.0%
TCATCCTTACGGTTAGGGTT+AGG + chr1_3:40487776-40487795 Msa0118210:five_prime_UTR 45.0%
CATCCTTACGGTTAGGGTTA+GGG + chr1_3:40487777-40487796 Msa0118210:five_prime_UTR 45.0%
AAACCCTAACCCTAACCGTA+AGG - chr1_3:40487783-40487802 None:intergenic 45.0%
GAAGAGATAGAGAGCTTGAG+AGG - chr1_3:40487808-40487827 None:intergenic 45.0%
AGGAGTAGATCGAGATCCAA+AGG - chr1_3:40487868-40487887 None:intergenic 45.0%
TATGAAGCATGGACACTCCT+CGG - chr1_3:40488443-40488462 None:intergenic 45.0%
CTTCGACAACAGAGTTTCAG+AGG - chr1_3:40488537-40488556 None:intergenic 45.0%
TCTGTTGTCGAAGTAGTCAC+TGG + chr1_3:40488544-40488563 Msa0118210:intron 45.0%
! TTCACATGACCCTGAGTTGA+AGG + chr1_3:40488801-40488820 Msa0118210:intron 45.0%
! GCAACAGAAATGGACTCAAC+TGG + chr1_3:40488951-40488970 Msa0118210:intron 45.0%
! GAAATGGACTCAACTGGTGT+AGG + chr1_3:40488957-40488976 Msa0118210:intron 45.0%
TGATGAACCCACCTTCCAAT+TGG + chr1_3:40489345-40489364 Msa0118210:intron 45.0%
CCAATGCTACAAAGCTGATC+AGG - chr1_3:40489635-40489654 None:intergenic 45.0%
! CCTGATCAGCTTTGTAGCAT+TGG + chr1_3:40489632-40489651 Msa0118210:intron 45.0%
! AGGAGAGTACAACAGTTGGA+GGG - chr1_3:40489973-40489992 None:intergenic 45.0%
! AGTGAGGAGAGTACAACAGT+TGG - chr1_3:40489977-40489996 None:intergenic 45.0%
CAGGTGATTAGACTTGACTG+TGG - chr1_3:40490097-40490116 None:intergenic 45.0%
!! ACAGACACCATGAGTTGATC+TGG + chr1_3:40490177-40490196 Msa0118210:intron 45.0%
TCCCATTGGAAACCTACCAT+TGG + chr1_3:40490215-40490234 Msa0118210:intron 45.0%
TCTGATCCGCATTATCTGAC+TGG + chr1_3:40490440-40490459 Msa0118210:intron 45.0%
CAACATAGAGTTGGGCACTT+GGG + chr1_3:40490471-40490490 Msa0118210:intron 45.0%
! GATGCAGTTGCGGATTAACT+TGG + chr1_3:40490534-40490553 Msa0118210:intron 45.0%
AAGTGACAACCCTCACCAAA+TGG - chr1_3:40490787-40490806 None:intergenic 45.0%
CACTTCTCACATCATGTTCC+CGG + chr1_3:40490802-40490821 Msa0118210:CDS 45.0%
! ATTGTTAGAGACTGGTGGTG+GGG - chr1_3:40490893-40490912 None:intergenic 45.0%
CATTGTTAGAGACTGGTGGT+GGG - chr1_3:40490894-40490913 None:intergenic 45.0%
GAACCATTGTTAGAGACTGG+TGG - chr1_3:40490898-40490917 None:intergenic 45.0%
GCAGAACCATTGTTAGAGAC+TGG - chr1_3:40490901-40490920 None:intergenic 45.0%
TCTGCTGAAGGCTGCAAATT+TGG + chr1_3:40490952-40490971 Msa0118210:CDS 45.0%
! CCATTTTGCCCATGGTGAAT+GGG + chr1_3:40490984-40491003 Msa0118210:CDS 45.0%
!! AGTTGATGATCACCGTCCAA+TGG + chr1_3:40491032-40491051 Msa0118210:CDS 45.0%
!! CATTTGTAGGTGCCATTGGA+CGG - chr1_3:40491047-40491066 None:intergenic 45.0%
! CCAACATTTGTAGGTGCCAT+TGG - chr1_3:40491051-40491070 None:intergenic 45.0%
CCAATGGCACCTACAAATGT+TGG + chr1_3:40491048-40491067 Msa0118210:CDS 45.0%
GGCATACGACCAACATTTGT+AGG - chr1_3:40491060-40491079 None:intergenic 45.0%
ACAAATGTTGGTCGTATGCC+TGG + chr1_3:40491060-40491079 Msa0118210:CDS 45.0%
ACTGATCTTGGCAGTGGAAT+TGG - chr1_3:40491130-40491149 None:intergenic 45.0%
TTCTACACTGATCTTGGCAG+TGG - chr1_3:40491136-40491155 None:intergenic 45.0%
AGTGTAGAAGCTTCTTTGGC+TGG + chr1_3:40491147-40491166 Msa0118210:CDS 45.0%
TCTTTGGCTGGAGCTATCAT+TGG + chr1_3:40491159-40491178 Msa0118210:CDS 45.0%
GCTGGAGCTATCATTGGAAA+GGG + chr1_3:40491165-40491184 Msa0118210:CDS 45.0%
AAGCAGATATGTCGCCAAAC+AGG + chr1_3:40491201-40491220 Msa0118210:CDS 45.0%
CTTGATGTTTCTTCCAGGTG+CGG - chr1_3:40491403-40491422 None:intergenic 45.0%
GCTAAAGGATCCTGCACATT+TGG + chr1_3:40491444-40491463 Msa0118210:CDS 45.0%
!! GAAAGATGTCACTTTGCCCA+TGG + chr1_3:40491468-40491487 Msa0118210:CDS 45.0%
!! AATAAATAAATAAAATAAAG+AGG - chr1_3:40487983-40488002 None:intergenic 5.0%
!!! AAATTACAATTTTATTTATA+TGG - chr1_3:40488193-40488212 None:intergenic 5.0%
AATCAACCCTCCCTCGTTTG+CGG - chr1_3:40487912-40487931 None:intergenic 50.0%
!! GAGGAGTGTCCATGCTTCAT+AGG + chr1_3:40488442-40488461 Msa0118210:intron 50.0%
! GCTTCAATTGGAAGCACAGG+TGG + chr1_3:40488772-40488791 Msa0118210:intron 50.0%
TGCAGGAAGACCCATGACAA+TGG + chr1_3:40489207-40489226 Msa0118210:intron 50.0%
GCAGGAAGACCCATGACAAT+GGG + chr1_3:40489208-40489227 Msa0118210:intron 50.0%
!! AACCATCGCTCTGGAGCAAA+GGG - chr1_3:40489608-40489627 None:intergenic 50.0%
!! ATCTGCTGTTTCCACTGCTC+TGG + chr1_3:40489903-40489922 Msa0118210:intron 50.0%
AAAGAACAGGACCAGAGCAG+TGG - chr1_3:40489917-40489936 None:intergenic 50.0%
GTACAACAGTTGGAGGGAAG+AGG - chr1_3:40489967-40489986 None:intergenic 50.0%
! GAGGAGAGTACAACAGTTGG+AGG - chr1_3:40489974-40489993 None:intergenic 50.0%
!! GCTGGTTTGGGCATATAGTG+AGG - chr1_3:40489993-40490012 None:intergenic 50.0%
CCAAGTGCCCAACTCTATGT+TGG - chr1_3:40490473-40490492 None:intergenic 50.0%
CCAACATAGAGTTGGGCACT+TGG + chr1_3:40490470-40490489 Msa0118210:intron 50.0%
GCTTTGCTCTGATGCAGTTG+CGG + chr1_3:40490524-40490543 Msa0118210:intron 50.0%
! AGCATTGCTGGCTGTCCATT+TGG + chr1_3:40490769-40490788 Msa0118210:intron 50.0%
TTCTCACATCATGTTCCCGG+TGG + chr1_3:40490805-40490824 Msa0118210:CDS 50.0%
GCAACGGCATTATAACCACC+GGG - chr1_3:40490823-40490842 None:intergenic 50.0%
GGCAACGGCATTATAACCAC+CGG - chr1_3:40490824-40490843 None:intergenic 50.0%
! ACATTTCTAGGAGGTGCAGC+AGG - chr1_3:40490865-40490884 None:intergenic 50.0%
CCATTGTTAGAGACTGGTGG+TGG - chr1_3:40490895-40490914 None:intergenic 50.0%
CCACCACCAGTCTCTAACAA+TGG + chr1_3:40490892-40490911 Msa0118210:CDS 50.0%
!!! GACAAGTGCCATTTTGCCCA+TGG + chr1_3:40490976-40490995 Msa0118210:CDS 50.0%
!! GCCATTTTGCCCATGGTGAA+TGG + chr1_3:40490983-40491002 Msa0118210:CDS 50.0%
CCCATTCACCATGGGCAAAA+TGG - chr1_3:40490987-40491006 None:intergenic 50.0%
ACCGAGTTCCCATTCACCAT+GGG - chr1_3:40490995-40491014 None:intergenic 50.0%
TACCGAGTTCCCATTCACCA+TGG - chr1_3:40490996-40491015 None:intergenic 50.0%
GGACGGTGATCATCAACTGA+TGG - chr1_3:40491030-40491049 None:intergenic 50.0%
GGCTGGAGCTATCATTGGAA+AGG + chr1_3:40491164-40491183 Msa0118210:CDS 50.0%
GGAGCTATCATTGGAAAGGG+TGG + chr1_3:40491168-40491187 Msa0118210:CDS 50.0%
GCCGCTGAATTGCGAAAGAT+AGG + chr1_3:40491492-40491511 Msa0118210:CDS 50.0%
AACGGAGGAAGATGGGGGTT+TGG - chr1_3:40487752-40487771 None:intergenic 55.0%
ATCAACCCTCCCTCGTTTGC+GGG - chr1_3:40487911-40487930 None:intergenic 55.0%
GCACAGATACGGACACGACA+CGG + chr1_3:40488316-40488335 Msa0118210:intron 55.0%
GCATGGACACTCCTCGGATT+AGG - chr1_3:40488437-40488456 None:intergenic 55.0%
!! ACCATCGCTCTGGAGCAAAG+GGG - chr1_3:40489607-40489626 None:intergenic 55.0%
!! CAACCATCGCTCTGGAGCAA+AGG - chr1_3:40489609-40489628 None:intergenic 55.0%
! TGCTGGCTGTCCATTTGGTG+AGG + chr1_3:40490774-40490793 Msa0118210:CDS 55.0%
! GCTGGCTGTCCATTTGGTGA+GGG + chr1_3:40490775-40490794 Msa0118210:CDS 55.0%
GCCCATGGTGAATGGGAACT+CGG + chr1_3:40490991-40491010 Msa0118210:CDS 55.0%
! TCGTATGCCTGGTCGAGTTG+AGG + chr1_3:40491071-40491090 Msa0118210:CDS 55.0%
GTTGAGGCTCCTTCTGGTCT+AGG + chr1_3:40491087-40491106 Msa0118210:CDS 55.0%
CTAGTACCGCCTAGACCAGA+AGG - chr1_3:40491099-40491118 None:intergenic 55.0%
! GGTCTAGGCGGTACTAGCTT+TGG + chr1_3:40491102-40491121 Msa0118210:CDS 55.0%
TGTTTCTTCCAGGTGCGGCT+GGG - chr1_3:40491398-40491417 None:intergenic 55.0%
ATGTTTCTTCCAGGTGCGGC+TGG - chr1_3:40491399-40491418 None:intergenic 55.0%
TCGCAATTCAGCGGCTCCAT+GGG - chr1_3:40491487-40491506 None:intergenic 55.0%
TTCGCAATTCAGCGGCTCCA+TGG - chr1_3:40491488-40491507 None:intergenic 55.0%
ACCATGGATGCCCGCAAACG+AGG + chr1_3:40487898-40487917 Msa0118210:exon 60.0%
CCATGGATGCCCGCAAACGA+GGG + chr1_3:40487899-40487918 Msa0118210:exon 60.0%
!! TGTCGGTGTCGCGTCAGTGT+CGG + chr1_3:40488398-40488417 Msa0118210:intron 60.0%
ACCTGGACACGCCTAATCCG+AGG + chr1_3:40488423-40488442 Msa0118210:intron 60.0%
! TCCTCGGATTAGGCGTGTCC+AGG - chr1_3:40488427-40488446 None:intergenic 60.0%
TCCCCTTTGCTCCAGAGCGA+TGG + chr1_3:40489603-40489622 Msa0118210:intron 60.0%
TCAGGACGCAACCATCGCTC+TGG - chr1_3:40489617-40489636 None:intergenic 60.0%
CAGTTGGAGGGAAGAGGCAG+AGG - chr1_3:40489961-40489980 None:intergenic 60.0%
! GGGGCGGCAACATTTCTAGG+AGG - chr1_3:40490874-40490893 None:intergenic 60.0%
GGTGGGGCGGCAACATTTCT+AGG - chr1_3:40490877-40490896 None:intergenic 60.0%
!! GTTAGAGACTGGTGGTGGGG+CGG - chr1_3:40490890-40490909 None:intergenic 60.0%
GAAGGAGCCTCAACTCGACC+AGG - chr1_3:40491081-40491100 None:intergenic 60.0%
!! GGTCGAGTTGAGGCTCCTTC+TGG + chr1_3:40491081-40491100 Msa0118210:CDS 60.0%
GAGGCTCCTTCTGGTCTAGG+CGG + chr1_3:40491090-40491109 Msa0118210:CDS 60.0%
TGCCCCACCTAAATCCACCC+CGG + chr1_3:40491353-40491372 Msa0118210:CDS 60.0%
! ACCCGGGGTGGATTTAGGTG+GGG - chr1_3:40491358-40491377 None:intergenic 60.0%
! CACCCGGGGTGGATTTAGGT+GGG - chr1_3:40491359-40491378 None:intergenic 60.0%
CCCTCGTTTGCGGGCATCCA+TGG - chr1_3:40487902-40487921 None:intergenic 65.0%
TGGATGCCCGCAAACGAGGG+AGG + chr1_3:40487902-40487921 Msa0118210:CDS 65.0%
GGATGCCCGCAAACGAGGGA+GGG + chr1_3:40487903-40487922 Msa0118210:CDS 65.0%
! TCGCGTCAGTGTCGGACACC+TGG + chr1_3:40488406-40488425 Msa0118210:intron 65.0%
GCCCCACCTAAATCCACCCC+GGG + chr1_3:40491354-40491373 Msa0118210:CDS 65.0%
! GCACCCGGGGTGGATTTAGG+TGG - chr1_3:40491360-40491379 None:intergenic 65.0%
! GGAGCACCCGGGGTGGATTT+AGG - chr1_3:40491363-40491382 None:intergenic 65.0%
!! ACCACCAGCAGGAGCACCCG+GGG - chr1_3:40491373-40491392 None:intergenic 70.0%
!! CACCACCAGCAGGAGCACCC+GGG - chr1_3:40491374-40491393 None:intergenic 70.0%
!! CCACCACCAGCAGGAGCACC+CGG - chr1_3:40491375-40491394 None:intergenic 70.0%
TCCACCCCGGGTGCTCCTGC+TGG + chr1_3:40491366-40491385 Msa0118210:CDS 75.0%
!! ACCAGCAGGAGCACCCGGGG+TGG - chr1_3:40491370-40491389 None:intergenic 75.0%
ACCCCGGGTGCTCCTGCTGG+TGG + chr1_3:40491369-40491388 Msa0118210:CDS 75.0%
CCGGGTGCTCCTGCTGGTGG+TGG + chr1_3:40491372-40491391 Msa0118210:CDS 75.0%
! GCGGCTGGGCCACCACCAGC+AGG - chr1_3:40491384-40491403 None:intergenic 80.0%
!! GGTGGTGGCCCAGCCGCACC+TGG + chr1_3:40491387-40491406 Msa0118210:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 40487607 40491762 40487607 ID=Msa0118210;Name=Msa0118210
chr1_3 mRNA 40487607 40491762 40487607 ID=Msa0118210-mRNA-1;Parent=Msa0118210;Name=Msa0118210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=294|1|1|1|1|1|3|241|290
chr1_3 exon 40487607 40487967 40487607 ID=Msa0118210-mRNA-1:exon:12389;Parent=Msa0118210-mRNA-1
chr1_3 exon 40488958 40489012 40488958 ID=Msa0118210-mRNA-1:exon:12390;Parent=Msa0118210-mRNA-1
chr1_3 exon 40490771 40491762 40490771 ID=Msa0118210-mRNA-1:exon:12391;Parent=Msa0118210-mRNA-1
chr1_3 five_prime_UTR 40487607 40487900 40487607 ID=Msa0118210-mRNA-1:five_prime_utr;Parent=Msa0118210-mRNA-1
chr1_3 CDS 40487901 40487967 40487901 ID=Msa0118210-mRNA-1:cds;Parent=Msa0118210-mRNA-1
chr1_3 CDS 40488958 40489012 40488958 ID=Msa0118210-mRNA-1:cds;Parent=Msa0118210-mRNA-1
chr1_3 CDS 40490771 40491521 40490771 ID=Msa0118210-mRNA-1:cds;Parent=Msa0118210-mRNA-1
chr1_3 three_prime_UTR 40491522 40491762 40491522 ID=Msa0118210-mRNA-1:three_prime_utr;Parent=Msa0118210-mRNA-1
Gene Sequence

>Msa0118210

ATGGATGCCCGCAAACGAGGGAGGGTTGATTCTGCTGTTAATGGCTCCGTCAAGAAAACCAAACAAGAAATGGACTCAACTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGCTGTCCATTTGGTGAGGGTTGTCACTTCTCACATCATGTTCCCGGTGGTTATAATGCCGTTGCCCAGATGATGAATCTTAAACCTGCTGCACCTCCTAGAAATGTTGCCGCCCCACCACCAGTCTCTAACAATGGTTCTGCTGTTAAAAGCCGCATATGTAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTCGGTAAACCTTTTGCTCCATCAGTTGATGATCACCGTCCAATGGCACCTACAAATGTTGGTCGTATGCCTGGTCGAGTTGAGGCTCCTTCTGGTCTAGGCGGTACTAGCTTTGGTGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCTTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTGCACTCGAAGCAGATATGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTGCTTTTGACTCTATCAGTGTCTGCCCCACCTAAATCCACCCCGGGTGCTCCTGCTGGTGGTGGCCCAGCCGCACCTGGAAGAAACATCAAGACCAAGCTGTGTGAGAATTTTGCTAAAGGATCCTGCACATTTGGAGAAAGATGTCACTTTGCCCATGGAGCCGCTGAATTGCGAAAGATAGGAGTCTAA
Protein sequence

>Msa0118210

MDARKRGRVDSAVNGSVKKTKQEMDSTGVGSKTKPCTKFFSIAGCPFGEGCHFSHHVPGGYNAVAQMMNLKPAAPPRNVAAPPPVSNNGSAVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPFAPSVDDHRPMAPTNVGRMPGRVEAPSGLGGTSFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKSTPGAPAGGGPAAPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKIGV*