AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0119370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119370 MtrunA17_Chr1g0177151 93.585 265 17 0 1 265 1 265 0.0 504
Msa0119370 MtrunA17_Chr7g0224601 67.411 224 69 2 34 253 28 251 1.68e-105 308
Msa0119370 MtrunA17_Chr3g0099561 68.182 220 70 0 34 253 26 245 1.86e-104 305
Msa0119370 MtrunA17_Chr8g0392781 52.941 289 98 2 1 251 1 289 2.63e-97 289
Msa0119370 MtrunA17_Chr6g0477171 62.814 199 74 0 58 256 48 246 7.84e-86 256
Msa0119370 MtrunA17_Chr5g0444621 58.511 188 78 0 66 253 52 239 2.95e-75 230
Msa0119370 MtrunA17_Chr3g0083821 56.303 119 52 0 52 170 12 130 1.68e-39 134
Msa0119370 MtrunA17_Chr3g0083811 58.333 72 30 0 182 253 1 72 3.49e-23 91.3
Msa0119370 MtrunA17_Chr5g0444631 66.038 53 18 0 108 160 4 56 5.61e-17 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119370 AT3G20800.1 62.548 259 90 3 1 253 1 258 4.25e-105 308
Msa0119370 AT5G12980.1 61.176 255 96 2 1 253 1 254 9.20e-101 296
Msa0119370 AT2G32550.2 35.648 216 125 4 49 253 67 279 3.46e-36 131
Msa0119370 AT2G32550.3 35.610 205 118 4 60 253 39 240 7.70e-35 127
Msa0119370 AT2G32550.1 36.943 157 96 2 100 253 29 185 3.77e-30 113

Find 48 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTTCATTTGCTCTCTA+AGG 0.219918 1_3:+43328856 Msa0119370:CDS
CTAACTTACTTGATGTATTA+AGG 0.245270 1_3:-43331470 None:intergenic
TGCCTACGCAATATGGAAAT+TGG 0.348006 1_3:+43331732 Msa0119370:CDS
GCCGTTGTGCCTACGCAATA+TGG 0.352059 1_3:+43331725 Msa0119370:CDS
GATTTAAGACTTGCGAGTCT+TGG 0.402589 1_3:+43331504 Msa0119370:CDS
CAATACTCTAGCTCTACTTC+AGG 0.405948 1_3:+43330411 Msa0119370:CDS
ATGAATGAAAACTTTGTGTC+AGG 0.407209 1_3:-43330593 None:intergenic
TAAGATGGTGGAGTTGGGTT+CGG 0.407226 1_3:-43332096 None:intergenic
AGGAAGGGATACAGATATAT+AGG 0.410734 1_3:-43331450 None:intergenic
GTTAAGACTAAGGAAGCAAT+AGG 0.441341 1_3:+43331678 Msa0119370:CDS
TTCTTCAAGGAGGGTGATTG+AGG 0.449123 1_3:-43328728 None:intergenic
CCGTTATTATGGAATTCAAT+TGG 0.452277 1_3:+43329883 Msa0119370:CDS
AGCACTTAAGATGGTGGAGT+TGG 0.458933 1_3:-43332102 None:intergenic
GTGCTGGAGGCAGATGTAAC+AGG 0.465456 1_3:-43328764 None:intergenic
CATCTTGTTGCCAATGGTGC+TGG 0.465484 1_3:-43328780 None:intergenic
CAGTTGGTCGAGCTTTGGAC+AGG 0.472419 1_3:+43331977 Msa0119370:CDS
GCACTTAAGATGGTGGAGTT+GGG 0.483872 1_3:-43332101 None:intergenic
TCTGTCAGATGATGATGGTT+TGG 0.494178 1_3:+43331921 Msa0119370:CDS
GCAAGTCTTAAATCTTCAAA+TGG 0.494179 1_3:-43331495 None:intergenic
ACATCTGCCTCCAGCACCAT+TGG 0.494495 1_3:+43328770 Msa0119370:CDS
CTTACTTGATGTATTAAGGA+AGG 0.509839 1_3:-43331466 None:intergenic
CCAATTGAATTCCATAATAA+CGG 0.510406 1_3:-43329883 None:intergenic
AAAATTCTGTCAGATGATGA+TGG 0.512472 1_3:+43331916 Msa0119370:CDS
TCTTCAAGGAGGGTGATTGA+GGG 0.516540 1_3:-43328727 None:intergenic
TCGAGCTTTGGACAGGATGT+TGG 0.529344 1_3:+43331984 Msa0119370:CDS
ATATTCACAGGTTAAGACTA+AGG 0.533680 1_3:+43331668 Msa0119370:intron
TTACTTGATGTATTAAGGAA+GGG 0.537664 1_3:-43331465 None:intergenic
AGTCATTGCTGCCATGGTAA+AGG 0.543352 1_3:+43331527 Msa0119370:CDS
AATTCATTATTCTTCAAGGA+GGG 0.558130 1_3:-43328737 None:intergenic
GCATTACTTCAGTTGCGAGT+AGG 0.561900 1_3:-43331704 None:intergenic
TTCAAGGAGGGTGATTGAGG+GGG 0.561905 1_3:-43328725 None:intergenic
TCTTGGAGTCATTGCTGCCA+TGG 0.568265 1_3:+43331521 Msa0119370:CDS
AGCTTTAAAAGACGAGGTGA+AGG 0.570450 1_3:-43332024 None:intergenic
AATGGAGGAAGCACTTAAGA+TGG 0.575343 1_3:-43332111 None:intergenic
TCAAGGAGGGTGATTGAGGG+GGG 0.591467 1_3:-43328724 None:intergenic
TGAATGAAAACTTTGTGTCA+GGG 0.602907 1_3:-43330592 None:intergenic
TGCCAATTTCCATATTGCGT+AGG 0.604311 1_3:-43331734 None:intergenic
ATACAACATCTTGTTGCCAA+TGG 0.605197 1_3:-43328786 None:intergenic
CTTGTTGCCAATGGTGCTGG+AGG 0.622571 1_3:-43328777 None:intergenic
GGAGGAAGCACTTAAGATGG+TGG 0.625431 1_3:-43332108 None:intergenic
TCCATATTGCGTAGGCACAA+CGG 0.628181 1_3:-43331726 None:intergenic
AAATTCATTATTCTTCAAGG+AGG 0.632490 1_3:-43328738 None:intergenic
ATAGAATAATACCTTTACCA+TGG 0.642599 1_3:-43331538 None:intergenic
CTTCAAGGAGGGTGATTGAG+GGG 0.647804 1_3:-43328726 None:intergenic
ATCATAAGCTTTAAAAGACG+AGG 0.660763 1_3:-43332030 None:intergenic
TTTGTGAGACTTGTATAACA+CGG 0.661280 1_3:-43332054 None:intergenic
TGAAAACTTTGTGTCAGGGT+GGG 0.675917 1_3:-43330588 None:intergenic
ATGAAAACTTTGTGTCAGGG+TGG 0.707370 1_3:-43330589 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGTAAAAAAAATATAAAT+GGG - chr1_3:43329053-43329072 None:intergenic 10.0%
!! TTGAGTAAAAAAAATATAAA+TGG - chr1_3:43329054-43329073 None:intergenic 10.0%
!!! GAAAAATGAAAATTTTAATT+AGG + chr1_3:43329158-43329177 Msa0119370:intron 10.0%
!!! TGATTTTTTTTGTATAAAAA+TGG + chr1_3:43331096-43331115 Msa0119370:intron 10.0%
!!! TATTTTTTATATGAAATACA+AGG + chr1_3:43331311-43331330 Msa0119370:intron 10.0%
!!! ATTTTTTATATGAAATACAA+GGG + chr1_3:43331312-43331331 Msa0119370:intron 10.0%
!! AAAAAATTCATTATTCTTCA+AGG - chr1_3:43328744-43328763 None:intergenic 15.0%
!! GAGTAAAAAAAATATAAATG+GGG - chr1_3:43329052-43329071 None:intergenic 15.0%
!! AATTCTTATAAAATACCAAA+TGG - chr1_3:43329082-43329101 None:intergenic 15.0%
!!! TTTGGTATTTTATAAGAATT+AGG + chr1_3:43329082-43329101 Msa0119370:intron 15.0%
!! AAATATTTGTGTTTACAAAT+AGG - chr1_3:43330052-43330071 None:intergenic 15.0%
!!! AAATTTAAAATTTCACTTCA+TGG - chr1_3:43330316-43330335 None:intergenic 15.0%
!! TAAGAAGAAAATAAAAACAA+CGG - chr1_3:43330509-43330528 None:intergenic 15.0%
!! AAAAAAAGAAAAAGAAAAGA+AGG - chr1_3:43331039-43331058 None:intergenic 15.0%
!!! TTCTTTTCTTTTTCTTTTTT+TGG + chr1_3:43331038-43331057 Msa0119370:intron 15.0%
!!! ATTTTATTAGAGAATAAAGA+AGG - chr1_3:43331077-43331096 None:intergenic 15.0%
!!! TTTTTTATATGAAATACAAG+GGG + chr1_3:43331313-43331332 Msa0119370:intron 15.0%
!! ATTTCATTAGGAATTATAAT+TGG - chr1_3:43331859-43331878 None:intergenic 15.0%
!!! ATTTTATAAGAATTAGGATG+TGG + chr1_3:43329088-43329107 Msa0119370:intron 20.0%
!!! ATTTTTTTATTACCTAGCTT+TGG + chr1_3:43329298-43329317 Msa0119370:intron 20.0%
!! GAACAATGAAATATGAAATT+AGG + chr1_3:43329473-43329492 Msa0119370:intron 20.0%
!!! TACTATTGCAATATTTTTAC+AGG + chr1_3:43329906-43329925 Msa0119370:CDS 20.0%
!! TTATTTACAGTAGAATTTCT+AGG + chr1_3:43329970-43329989 Msa0119370:intron 20.0%
!!! CTTAATTTTTCTTTCTCTTT+TGG + chr1_3:43330026-43330045 Msa0119370:intron 20.0%
!! TGGAAACATAAAACATAAAA+TGG - chr1_3:43330077-43330096 None:intergenic 20.0%
!! TTAAATAGTTCACTCTATAT+TGG + chr1_3:43330192-43330211 Msa0119370:intron 20.0%
!! TAAATAGTTCACTCTATATT+GGG + chr1_3:43330193-43330212 Msa0119370:intron 20.0%
!! TTACAATTGTGCTTAATTAT+TGG + chr1_3:43330276-43330295 Msa0119370:intron 20.0%
!!! TGAAATTTTAAATTTCTCTC+AGG + chr1_3:43330321-43330340 Msa0119370:intron 20.0%
!! ATTTATAATTGCTAGAAATG+AGG + chr1_3:43330830-43330849 Msa0119370:intron 20.0%
!! TTTATAATTGCTAGAAATGA+GGG + chr1_3:43330831-43330850 Msa0119370:intron 20.0%
!! AAATATGTCACATAAATTGA+TGG + chr1_3:43330917-43330936 Msa0119370:intron 20.0%
!!! TGTAGTTTTTATCAAAATTG+TGG - chr1_3:43331799-43331818 None:intergenic 20.0%
! AATTCATTATTCTTCAAGGA+GGG - chr1_3:43328740-43328759 None:intergenic 25.0%
! AAATTCATTATTCTTCAAGG+AGG - chr1_3:43328741-43328760 None:intergenic 25.0%
! CCATAAATTGAAAGATGTAT+GGG - chr1_3:43328888-43328907 None:intergenic 25.0%
! CCATACATCTTTCAATTTAT+GGG + chr1_3:43328886-43328905 Msa0119370:intron 25.0%
! CATACATCTTTCAATTTATG+GGG + chr1_3:43328887-43328906 Msa0119370:intron 25.0%
! TTAAATGTGAATACTCTCTA+TGG + chr1_3:43328989-43329008 Msa0119370:intron 25.0%
! TAAATGTGAATACTCTCTAT+GGG + chr1_3:43328990-43329009 Msa0119370:intron 25.0%
!! TTTTACTCAATTGAACCATT+TGG + chr1_3:43329064-43329083 Msa0119370:intron 25.0%
!!! TATAGCTTTTTGACTCATTT+GGG - chr1_3:43329121-43329140 None:intergenic 25.0%
!!! ATATAGCTTTTTGACTCATT+TGG - chr1_3:43329122-43329141 None:intergenic 25.0%
!!! CAAAGCTTTGAATGATATAT+AGG - chr1_3:43329205-43329224 None:intergenic 25.0%
! GAAGAAATACATGTAGTTAA+AGG + chr1_3:43329399-43329418 Msa0119370:intron 25.0%
!! ATAGATATCATTGATTGCAT+TGG + chr1_3:43329657-43329676 Msa0119370:intron 25.0%
! CCAATTGAATTCCATAATAA+CGG - chr1_3:43329886-43329905 None:intergenic 25.0%
! AAACAAATTAAGCATTAGCA+AGG - chr1_3:43330227-43330246 None:intergenic 25.0%
!! AACAAGATACAAAACTTGTT+AGG - chr1_3:43330451-43330470 None:intergenic 25.0%
!!! CAAGTTTTGTATCTTGTTTA+AGG + chr1_3:43330453-43330472 Msa0119370:intron 25.0%
!! ACAAAGTTTTCATTCATGAA+AGG + chr1_3:43330599-43330618 Msa0119370:CDS 25.0%
! TTGACAAGTACAATAATAGT+TGG - chr1_3:43330663-43330682 None:intergenic 25.0%
!! TTAAGTTGTTAGTATCTTCA+TGG - chr1_3:43330740-43330759 None:intergenic 25.0%
! ATGAGTGGAATAATATCTAA+CGG - chr1_3:43330956-43330975 None:intergenic 25.0%
! GATAAAAAAGTTTAGATGAG+TGG - chr1_3:43330971-43330990 None:intergenic 25.0%
!!! TTCTCTCTAATTTATTTTGC+AGG + chr1_3:43331180-43331199 Msa0119370:intron 25.0%
!!! CATCATTTTTCCTCATAAAA+AGG + chr1_3:43331357-43331376 Msa0119370:intron 25.0%
! TTACTTGATGTATTAAGGAA+GGG - chr1_3:43331468-43331487 None:intergenic 25.0%
! CTAACTTACTTGATGTATTA+AGG - chr1_3:43331473-43331492 None:intergenic 25.0%
! ATAGAATAATACCTTTACCA+TGG - chr1_3:43331541-43331560 None:intergenic 25.0%
! GAATATCATGTATCAACAAA+TGG - chr1_3:43331654-43331673 None:intergenic 25.0%
!! AGTTTTTATCAAAATTGTGG+TGG - chr1_3:43331796-43331815 None:intergenic 25.0%
!! ATTGGTAACTAAATTACAAG+TGG - chr1_3:43331841-43331860 None:intergenic 25.0%
! AGTGATATACACATTTCATT+AGG - chr1_3:43331871-43331890 None:intergenic 25.0%
CCCATACATCTTTCAATTTA+TGG + chr1_3:43328885-43328904 Msa0119370:intron 30.0%
CCCATAAATTGAAAGATGTA+TGG - chr1_3:43328889-43328908 None:intergenic 30.0%
GTTTCATCCTGATAAAATCA+TGG - chr1_3:43329373-43329392 None:intergenic 30.0%
! GATTTTATCAGGATGAAACA+TGG + chr1_3:43329374-43329393 Msa0119370:intron 30.0%
CAGTGAATATATGAGGAAAA+AGG + chr1_3:43329443-43329462 Msa0119370:intron 30.0%
ATTTCATCCATGTAATCATC+TGG + chr1_3:43329545-43329564 Msa0119370:intron 30.0%
ACTTAAACCAGATGATTACA+TGG - chr1_3:43329555-43329574 None:intergenic 30.0%
!! AATCCATTTCTAAAATCACC+TGG + chr1_3:43329695-43329714 Msa0119370:intron 30.0%
!! ATCCATTTCTAAAATCACCT+GGG + chr1_3:43329696-43329715 Msa0119370:intron 30.0%
GTTACAATCTTGTTAGTACT+TGG + chr1_3:43329766-43329785 Msa0119370:intron 30.0%
CCGTTATTATGGAATTCAAT+TGG + chr1_3:43329883-43329902 Msa0119370:CDS 30.0%
GAATTGTGAAAGTAAAAGGT+TGG - chr1_3:43330097-43330116 None:intergenic 30.0%
GTTGGAATTGTGAAAGTAAA+AGG - chr1_3:43330101-43330120 None:intergenic 30.0%
GAGGGAAAGTTAAAACTAAA+TGG + chr1_3:43330141-43330160 Msa0119370:intron 30.0%
TGAATGAAAACTTTGTGTCA+GGG - chr1_3:43330595-43330614 None:intergenic 30.0%
ATGAATGAAAACTTTGTGTC+AGG - chr1_3:43330596-43330615 None:intergenic 30.0%
TAATTTACCACTATCCTTCA+AGG + chr1_3:43330795-43330814 Msa0119370:intron 30.0%
TATCCTTCAAGGAAATTTGT+TGG + chr1_3:43330806-43330825 Msa0119370:intron 30.0%
! ATCCTTCAAGGAAATTTGTT+GGG + chr1_3:43330807-43330826 Msa0119370:intron 30.0%
! TCAAATGTTGCCTTTTTATG+AGG - chr1_3:43331370-43331389 None:intergenic 30.0%
TGTTAGCTGCATATAAGAAA+AGG - chr1_3:43331428-43331447 None:intergenic 30.0%
CTTACTTGATGTATTAAGGA+AGG - chr1_3:43331469-43331488 None:intergenic 30.0%
GCAAGTCTTAAATCTTCAAA+TGG - chr1_3:43331498-43331517 None:intergenic 30.0%
TGTTGATACATGATATTCAC+AGG + chr1_3:43331656-43331675 Msa0119370:intron 30.0%
ATATTCACAGGTTAAGACTA+AGG + chr1_3:43331668-43331687 Msa0119370:intron 30.0%
TGAAATGTGTATATCACTAC+AGG + chr1_3:43331873-43331892 Msa0119370:intron 30.0%
AAAATTCTGTCAGATGATGA+TGG + chr1_3:43331916-43331935 Msa0119370:CDS 30.0%
!! ATCATAAGCTTTAAAAGACG+AGG - chr1_3:43332033-43332052 None:intergenic 30.0%
TTTGTGAGACTTGTATAACA+CGG - chr1_3:43332057-43332076 None:intergenic 30.0%
ACAAGTCTCACAAAAAATCT+AGG + chr1_3:43332063-43332082 Msa0119370:CDS 30.0%
CAAGTCTCACAAAAAATCTA+GGG + chr1_3:43332064-43332083 Msa0119370:CDS 30.0%
ATACAACATCTTGTTGCCAA+TGG - chr1_3:43328789-43328808 None:intergenic 35.0%
!!! AAGAGCATTTTCTCGTAGAT+CGG - chr1_3:43328843-43328862 None:intergenic 35.0%
TAGTGTGTGTCAACTTGTAT+GGG - chr1_3:43328967-43328986 None:intergenic 35.0%
ATAGTGTGTGTCAACTTGTA+TGG - chr1_3:43328968-43328987 None:intergenic 35.0%
! TCACACTCCATGATTTTATC+AGG + chr1_3:43329363-43329382 Msa0119370:intron 35.0%
AGTGTGACAGTGAATATATG+AGG + chr1_3:43329436-43329455 Msa0119370:intron 35.0%
ATGTGATCGACAATGTGAAT+TGG + chr1_3:43329589-43329608 Msa0119370:intron 35.0%
TGTGATCGACAATGTGAATT+GGG + chr1_3:43329590-43329609 Msa0119370:intron 35.0%
!! AACCCAGGTGATTTTAGAAA+TGG - chr1_3:43329701-43329720 None:intergenic 35.0%
AAAAACTCGCACCGTTATTA+TGG + chr1_3:43329872-43329891 Msa0119370:CDS 35.0%
! CATGATTTTGTTACAGTGTG+TGG + chr1_3:43330562-43330581 Msa0119370:intron 35.0%
CAAATTTCCTTGAAGGATAG+TGG - chr1_3:43330805-43330824 None:intergenic 35.0%
ATCCCAACAAATTTCCTTGA+AGG - chr1_3:43330812-43330831 None:intergenic 35.0%
GGGTTAGAAACCAAACAAAT+AGG + chr1_3:43330851-43330870 Msa0119370:intron 35.0%
GTAGTTTGAGCCTATTTGTT+TGG - chr1_3:43330864-43330883 None:intergenic 35.0%
!! CTCAAACTACACATTGACTT+GGG + chr1_3:43330874-43330893 Msa0119370:intron 35.0%
GTGGAATAATATCTAACGGA+GGG - chr1_3:43330952-43330971 None:intergenic 35.0%
AGTGGAATAATATCTAACGG+AGG - chr1_3:43330953-43330972 None:intergenic 35.0%
GGATATACCAACTACAAAGT+AGG + chr1_3:43331117-43331136 Msa0119370:intron 35.0%
AGGAAGGGATACAGATATAT+AGG - chr1_3:43331453-43331472 None:intergenic 35.0%
GTTAAGACTAAGGAAGCAAT+AGG + chr1_3:43331678-43331697 Msa0119370:CDS 35.0%
ATCAAAATTGTGGTGGTTCA+TGG - chr1_3:43331789-43331808 None:intergenic 35.0%
!! AGAGCATTTTCTCGTAGATC+GGG - chr1_3:43328842-43328861 None:intergenic 40.0%
TGCTCTTCATTTGCTCTCTA+AGG + chr1_3:43328856-43328875 Msa0119370:CDS 40.0%
TGTGTCAACTTGTATGGGAT+TGG - chr1_3:43328962-43328981 None:intergenic 40.0%
TGCAATAGCTATCCAAAGCT+AGG - chr1_3:43329313-43329332 None:intergenic 40.0%
GTGAAACACATCAATAACCC+AGG - chr1_3:43329716-43329735 None:intergenic 40.0%
! CAACACTAAGTCACTTTGGT+TGG - chr1_3:43330119-43330138 None:intergenic 40.0%
TCGTCAACACTAAGTCACTT+TGG - chr1_3:43330123-43330142 None:intergenic 40.0%
!! AAAGTGACTTAGTGTTGACG+AGG + chr1_3:43330122-43330141 Msa0119370:intron 40.0%
!! AAGTGACTTAGTGTTGACGA+GGG + chr1_3:43330123-43330142 Msa0119370:intron 40.0%
TTCACTTCATGGTAAGTGCA+AGG - chr1_3:43330305-43330324 None:intergenic 40.0%
!! AGATTTTCTGGTGAAAGAGC+AGG - chr1_3:43330364-43330383 None:intergenic 40.0%
! TGTGCAGCAGTAAGATTTTC+TGG - chr1_3:43330376-43330395 None:intergenic 40.0%
!! CAATACTCTAGCTCTACTTC+AGG + chr1_3:43330411-43330430 Msa0119370:CDS 40.0%
TGAAAACTTTGTGTCAGGGT+GGG - chr1_3:43330591-43330610 None:intergenic 40.0%
ATGAAAACTTTGTGTCAGGG+TGG - chr1_3:43330592-43330611 None:intergenic 40.0%
! GCTCAAACTACACATTGACT+TGG + chr1_3:43330873-43330892 Msa0119370:intron 40.0%
GAATAATATCTAACGGAGGG+AGG - chr1_3:43330949-43330968 None:intergenic 40.0%
CCTAAGACCTACTTTGTAGT+TGG - chr1_3:43331127-43331146 None:intergenic 40.0%
CCAACTACAAAGTAGGTCTT+AGG + chr1_3:43331124-43331143 Msa0119370:intron 40.0%
! GATTTAAGACTTGCGAGTCT+TGG + chr1_3:43331504-43331523 Msa0119370:CDS 40.0%
TGCCTACGCAATATGGAAAT+TGG + chr1_3:43331732-43331751 Msa0119370:CDS 40.0%
TGCCAATTTCCATATTGCGT+AGG - chr1_3:43331737-43331756 None:intergenic 40.0%
!! TCTGTCAGATGATGATGGTT+TGG + chr1_3:43331921-43331940 Msa0119370:CDS 40.0%
CCAACTGCAAAAAAACGATC+TGG - chr1_3:43331964-43331983 None:intergenic 40.0%
!!! CCAGATCGTTTTTTTGCAGT+TGG + chr1_3:43331961-43331980 Msa0119370:CDS 40.0%
!! AGCTTTAAAAGACGAGGTGA+AGG - chr1_3:43332027-43332046 None:intergenic 40.0%
TCTTCAAGGAGGGTGATTGA+GGG - chr1_3:43328730-43328749 None:intergenic 45.0%
TTCTTCAAGGAGGGTGATTG+AGG - chr1_3:43328731-43328750 None:intergenic 45.0%
! GAGCATTTTCTCGTAGATCG+GGG - chr1_3:43328841-43328860 None:intergenic 45.0%
AGTCTCGTAACATGGTGCAT+CGG - chr1_3:43329027-43329046 None:intergenic 45.0%
AGTCATTGCTGCCATGGTAA+AGG + chr1_3:43331527-43331546 Msa0119370:CDS 45.0%
GCATTACTTCAGTTGCGAGT+AGG - chr1_3:43331707-43331726 None:intergenic 45.0%
TCCATATTGCGTAGGCACAA+CGG - chr1_3:43331729-43331748 None:intergenic 45.0%
! TTTTGCAGTTGGTCGAGCTT+TGG + chr1_3:43331972-43331991 Msa0119370:CDS 45.0%
!! TAAGATGGTGGAGTTGGGTT+CGG - chr1_3:43332099-43332118 None:intergenic 45.0%
!! AAAATTATAATATTTATGTA+TGG - chr1_3:43330482-43330501 None:intergenic 5.0%
TTCAAGGAGGGTGATTGAGG+GGG - chr1_3:43328728-43328747 None:intergenic 50.0%
CTTCAAGGAGGGTGATTGAG+GGG - chr1_3:43328729-43328748 None:intergenic 50.0%
CATCTTGTTGCCAATGGTGC+TGG - chr1_3:43328783-43328802 None:intergenic 50.0%
!! ATGGGGCTAGTCTCGTAACA+TGG - chr1_3:43329035-43329054 None:intergenic 50.0%
TCTTGGAGTCATTGCTGCCA+TGG + chr1_3:43331521-43331540 Msa0119370:CDS 50.0%
!! TCGAGCTTTGGACAGGATGT+TGG + chr1_3:43331984-43332003 Msa0119370:CDS 50.0%
TCAAGGAGGGTGATTGAGGG+GGG - chr1_3:43328727-43328746 None:intergenic 55.0%
GTGCTGGAGGCAGATGTAAC+AGG - chr1_3:43328767-43328786 None:intergenic 55.0%
ACATCTGCCTCCAGCACCAT+TGG + chr1_3:43328770-43328789 Msa0119370:CDS 55.0%
! CTTGTTGCCAATGGTGCTGG+AGG - chr1_3:43328780-43328799 None:intergenic 55.0%
GCCGTTGTGCCTACGCAATA+TGG + chr1_3:43331725-43331744 Msa0119370:CDS 55.0%
!! CAGTTGGTCGAGCTTTGGAC+AGG + chr1_3:43331977-43331996 Msa0119370:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 43328713 43332119 43328713 ID=Msa0119370;Name=Msa0119370
chr1_3 mRNA 43328713 43332119 43328713 ID=Msa0119370-mRNA-1;Parent=Msa0119370;Name=Msa0119370-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|7|0|265
chr1_3 exon 43328713 43328877 43328713 ID=Msa0119370-mRNA-1:exon:12970;Parent=Msa0119370-mRNA-1
chr1_3 exon 43329856 43329927 43329856 ID=Msa0119370-mRNA-1:exon:12971;Parent=Msa0119370-mRNA-1
chr1_3 exon 43330343 43330432 43330343 ID=Msa0119370-mRNA-1:exon:12972;Parent=Msa0119370-mRNA-1
chr1_3 exon 43330578 43330620 43330578 ID=Msa0119370-mRNA-1:exon:12973;Parent=Msa0119370-mRNA-1
chr1_3 exon 43331442 43331548 43331442 ID=Msa0119370-mRNA-1:exon:12974;Parent=Msa0119370-mRNA-1
chr1_3 exon 43331678 43331773 43331678 ID=Msa0119370-mRNA-1:exon:12975;Parent=Msa0119370-mRNA-1
chr1_3 exon 43331895 43332119 43331895 ID=Msa0119370-mRNA-1:exon:12976;Parent=Msa0119370-mRNA-1
chr1_3 CDS 43328713 43328877 43328713 ID=Msa0119370-mRNA-1:cds;Parent=Msa0119370-mRNA-1
chr1_3 CDS 43329856 43329927 43329856 ID=Msa0119370-mRNA-1:cds;Parent=Msa0119370-mRNA-1
chr1_3 CDS 43330343 43330432 43330343 ID=Msa0119370-mRNA-1:cds;Parent=Msa0119370-mRNA-1
chr1_3 CDS 43330578 43330620 43330578 ID=Msa0119370-mRNA-1:cds;Parent=Msa0119370-mRNA-1
chr1_3 CDS 43331442 43331548 43331442 ID=Msa0119370-mRNA-1:cds;Parent=Msa0119370-mRNA-1
chr1_3 CDS 43331678 43331773 43331678 ID=Msa0119370-mRNA-1:cds;Parent=Msa0119370-mRNA-1
chr1_3 CDS 43331895 43332119 43331895 ID=Msa0119370-mRNA-1:cds;Parent=Msa0119370-mRNA-1
Gene Sequence

>Msa0119370

ATGGCGAATTTCCCCCCTCAATCACCCTCCTTGAAGAATAATGAATTTTTTCCTGTTACATCTGCCTCCAGCACCATTGGCAACAAGATGTTGTATGCTGAGCGTCTTGTTATTGAACTGAGCAACCCCGATCTACGAGAAAATGCTCTTCATTTGCTCTCTAAGATGACAGATTTGTTTCAAAAACTCGCACCGTTATTATGGAATTCAATTGGTACTATTGCAATATTTTTACAGGAAATAATTACAATATATCCTGCTCTTTCACCAGAAAATCTTACTGCTGCACAATCAACTCGAATATGCAATACTCTAGCTCTACTTCAGTGTGTGGCTTCCCACCCTGACACAAAGTTTTCATTCATGAAAGCTAACATACCTATATATCTGTATCCCTTCCTTAATACATCAAGTAAGTTAGCTCCATTTGAAGATTTAAGACTTGCGAGTCTTGGAGTCATTGCTGCCATGGTAAAGGTTAAGACTAAGGAAGCAATAGGCTTCCTACTCGCAACTGAAGTAATGCCGTTGTGCCTACGCAATATGGAAATTGGCAAAGAATTGTCAAAAACTGTTGCAACATTTATCGTCGAGAAAATTCTGTCAGATGATGATGGTTTGGCGTATGTCTGTGCTACACCAGATCGTTTTTTTGCAGTTGGTCGAGCTTTGGACAGGATGTTGGCAAGTGTTGACAATCAACCTTCACCTCGTCTTTTAAAGCTTATGATTCCGTGTTATACAAGTCTCACAAAAAATCTAGGGTTGTTTAAGCCGAACCCAACTCCACCATCTTAA
Protein sequence

>Msa0119370

MANFPPQSPSLKNNEFFPVTSASSTIGNKMLYAERLVIELSNPDLRENALHLLSKMTDLFQKLAPLLWNSIGTIAIFLQEIITIYPALSPENLTAAQSTRICNTLALLQCVASHPDTKFSFMKANIPIYLYPFLNTSSKLAPFEDLRLASLGVIAAMVKVKTKEAIGFLLATEVMPLCLRNMEIGKELSKTVATFIVEKILSDDDGLAYVCATPDRFFAVGRALDRMLASVDNQPSPRLLKLMIPCYTSLTKNLGLFKPNPTPPS*