AlfalfaGEDB | Msa0119400

M. sativa cultivar zhongmu-4 / Msa0119400

KEGG: K08064
GO: GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02045.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0119400	sp\|Q8LFU0\|NFYAA_ARATH	44.518	301	109	13	29	325	13	259	1.99e-60	197

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0119400	G7I8J1	96.687	332	11	0	1	332	1	332	0.0	672

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0119400	TF	NF-YA

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0119400	MtrunA17_Chr1g0177091	96.687	332	11	0	1	332	1	332	0.0	672
Msa0119400	MtrunA17_Chr7g0267581	70.606	330	88	6	1	325	1	326	3.61e-162	456
Msa0119400	MtrunA17_Chr8g0352251	50.400	125	49	4	128	241	109	231	1.25e-29	114
Msa0119400	MtrunA17_Chr2g0300261	49.624	133	49	4	116	231	14	145	1.71e-29	113
Msa0119400	MtrunA17_Chr2g0292411	49.533	107	52	1	133	237	80	186	3.20e-27	106
Msa0119400	MtrunA17_Chr3g0103391	50.000	116	44	4	127	231	125	237	5.18e-27	108
Msa0119400	MtrunA17_Chr8g0343451	47.414	116	46	4	120	222	110	223	5.66e-26	105
Msa0119400	MtrunA17_Chr2g0329811	36.723	177	100	4	95	260	108	283	5.83e-25	103

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0119400	AT5G06510.1	44.518	301	109	13	29	325	13	259	2.03e-61	197
Msa0119400	AT5G06510.5	44.518	301	109	13	29	325	13	259	2.03e-61	197
Msa0119400	AT5G06510.2	44.518	301	109	13	29	325	13	259	2.03e-61	197
Msa0119400	AT5G06510.6	44.518	301	109	13	29	325	13	259	2.03e-61	197
Msa0119400	AT3G05690.1	43.385	325	117	17	20	326	9	284	4.38e-56	184
Msa0119400	AT5G06510.3	48.511	235	76	9	93	325	19	210	1.16e-55	181
Msa0119400	AT3G05690.2	43.385	325	117	17	20	326	46	321	3.99e-55	183
Msa0119400	AT5G06510.4	51.269	197	58	8	131	325	4	164	8.15e-49	162
Msa0119400	AT5G06510.7	51.269	197	58	8	131	325	4	164	8.15e-49	162
Msa0119400	AT2G34720.1	40.462	173	86	5	97	256	19	187	1.47e-32	120

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 76 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTCCAACAGAATTG+TGG	0.562402	1_3:-43362465	None:intergenic
AAACGACCACCGCATCCTCT+TGG	0.498137	1_3:-43363944	None:intergenic
AAAGTTTCTGCTAATGGAAA+CGG	0.509349	1_3:+43363977	Msa0119400:CDS
AAATGATGATTGCAGTGATA+AGG	0.560313	1_3:-43362925	None:intergenic
AACACAAAAGTTTCTGCTAA+TGG	0.270945	1_3:+43363971	Msa0119400:CDS
AACCAATTCACCATCTTTCC+AGG	0.379219	1_3:+43362667	Msa0119400:CDS
AACCACTGGACTGCAGCTGT+AGG	0.688049	1_3:-43364036	None:intergenic
AACCTCAGATTGTAAGACTT+CGG	0.557052	1_3:-43364068	None:intergenic
AATTCGTCAAAGGAGACAAA+CGG	0.518779	1_3:+43364100	Msa0119400:CDS
ACAAAATGGTTTGCAGCAGC+TGG	0.492247	1_3:+43364265	Msa0119400:CDS

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTAGTGAAAAAGGTTTCATT+TGG	-	chr1_3:43362564-43362583	None:intergenic	30.0%
TATATCGAATAACAAGTACC+TGG	-	chr1_3:43362688-43362707	None:intergenic	30.0%
AAATGATGATTGCAGTGATA+AGG	-	chr1_3:43362928-43362947	None:intergenic	30.0%
TTATGTACTAAAACACGGAT+TGG	-	chr1_3:43363046-43363065	None:intergenic	30.0%
CTGTGCAAAATATCCTTATA+TGG	+	chr1_3:43363102-43363121	Msa0119400:CDS	30.0%
CCGTAAAATTGATCCATATA+AGG	-	chr1_3:43363118-43363137	None:intergenic	30.0%
GATAGTTGTAAACAGATTTC+TGG	-	chr1_3:43363287-43363306	None:intergenic	30.0%
AACACAAAAGTTTCTGCTAA+TGG	+	chr1_3:43363971-43363990	Msa0119400:CDS	30.0%
AAAGTTTCTGCTAATGGAAA+CGG	+	chr1_3:43363977-43363996	Msa0119400:CDS	30.0%
TGGAACTTTAAATTCGTCAA+AGG	+	chr1_3:43364090-43364109	Msa0119400:CDS	30.0%

Showing 1 to 10 of 228 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	43362421	43364309	43362421	ID=Msa0119400;Name=Msa0119400
chr1_3	mRNA	43362421	43364309	43362421	ID=Msa0119400-mRNA-1;Parent=Msa0119400;Name=Msa0119400-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|5\|0\|332
chr1_3	exon	43362421	43362688	43362421	ID=Msa0119400-mRNA-1:exon:12965;Parent=Msa0119400-mRNA-1
chr1_3	exon	43362883	43362995	43362883	ID=Msa0119400-mRNA-1:exon:12966;Parent=Msa0119400-mRNA-1
chr1_3	exon	43363100	43363168	43363100	ID=Msa0119400-mRNA-1:exon:12967;Parent=Msa0119400-mRNA-1
chr1_3	exon	43363652	43363792	43363652	ID=Msa0119400-mRNA-1:exon:12968;Parent=Msa0119400-mRNA-1
chr1_3	exon	43363902	43364309	43363902	ID=Msa0119400-mRNA-1:exon:12969;Parent=Msa0119400-mRNA-1
chr1_3	CDS	43362421	43362688	43362421	ID=Msa0119400-mRNA-1:cds;Parent=Msa0119400-mRNA-1
chr1_3	CDS	43362883	43362995	43362883	ID=Msa0119400-mRNA-1:cds;Parent=Msa0119400-mRNA-1
chr1_3	CDS	43363100	43363168	43363100	ID=Msa0119400-mRNA-1:cds;Parent=Msa0119400-mRNA-1
chr1_3	CDS	43363652	43363792	43363652	ID=Msa0119400-mRNA-1:cds;Parent=Msa0119400-mRNA-1
chr1_3	CDS	43363902	43364309	43363902	ID=Msa0119400-mRNA-1:cds;Parent=Msa0119400-mRNA-1

Gene Sequence

>Msa0119400

ATGGCTATGCAACCTGTTTATCTTAAAGAACATGAAGGAAATGTCCACAATTCTGTTGGACAGTTTTCATCTGTGACTACAGCACCATGGTGGAGTAATGCCTATGGATCTCAACCTGTTTATGGAGGAGAGTCTTGTGGCCAAATGAAACCTTTTTCACTAGAGCTTTCCAACTACATAGACCAAATTGCTCCGAGTAAGAACTTAGTTCGAGGAGTTGAACAATTGTTTGATAAAGGACATACAAACCAATTCACCATCTTTCCAGATGATTGTAAGATGTCAGTTGATACACCGAATCATCAAGCAACCTTATCACTGCAATCATCATTTGCTGCTGAGCCACTTAACCGTTTTGAGCTAGGTTTTAACCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTACGGGCTCTTCTCGACTTATGGACCTCAAATCTCGGGACGTGTTATGCTTCCACTTAGCATGACATCTGACGACGGACCAACATACGTGAATGCTAAGCAATACCATGGTATCATCAGACGCAGGCATTCTCGTGCCAAAGCTGTGCTTCAGAATAAATTGATAAAGCGTAACAAGCCATATATGCACGAATCGCGTCATCTACATGCAATGCGTAGACCAAGAGGATGCGGTGGTCGTTTCTTGAACACAAAAGTTTCTGCTAATGGAAACGGTAAAAGCAGGAGTGAAGAGAACATAAACACTGGTGGCCTACAGCTGCAGTCCAGTGGTTCTCAGAGTTCCGAAGTCTTACAATCTGAGGTTGGAACTTTAAATTCGTCAAAGGAGACAAACGGAGGCAGTCCAAACGTCTCGGGGTCAGAGGTGACTAGCATGTATTCACAGGGAGGTCTTGATAGCTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATTGTCATGCCAACAAAATGGTTTGCAGCAGCTGGTAGACAGCTGCTGGAACCATAA

Protein sequence

>Msa0119400

MAMQPVYLKEHEGNVHNSVGQFSSVTTAPWWSNAYGSQPVYGGESCGQMKPFSLELSNYIDQIAPSKNLVRGVEQLFDKGHTNQFTIFPDDCKMSVDTPNHQATLSLQSSFAAEPLNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRVMLPLSMTSDDGPTYVNAKQYHGIIRRRHSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKVSANGNGKSRSEENINTGGLQLQSSGSQSSEVLQSEVGTLNSSKETNGGSPNVSGSEVTSMYSQGGLDSFTVNHIGSTVHSLGDMIDTGHGIVMPTKWFAAAGRQLLEP*