AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0119460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119460 MtrunA17_Chr1g0177751 98.462 650 8 2 1 649 1 649 0.0 1329
Msa0119460 MtrunA17_Chr7g0267481 64.460 695 166 23 1 649 1 660 0.0 783
Msa0119460 MtrunA17_Chr4g0025521 46.739 736 280 29 1 649 1 711 1.63e-165 491
Msa0119460 MtrunA17_Chr1g0155681 55.016 309 116 7 142 438 148 445 1.11e-99 318
Msa0119460 MtrunA17_Chr3g0141941 53.925 293 117 6 150 434 148 430 1.05e-94 301
Msa0119460 MtrunA17_Chr5g0403251 46.610 354 162 7 153 482 330 680 1.52e-87 289
Msa0119460 MtrunA17_Chr8g0373801 53.103 290 115 4 157 433 384 665 2.98e-87 290
Msa0119460 MtrunA17_Chr8g0387321 52.313 281 126 4 161 437 185 461 5.47e-80 265
Msa0119460 MtrunA17_Chr4g0028701 41.408 355 144 8 153 458 237 576 6.55e-73 248
Msa0119460 MtrunA17_Chr3g0141931 47.529 263 130 5 160 419 164 421 8.93e-72 239
Msa0119460 MtrunA17_Chr4g0008591 41.317 334 145 7 156 469 191 493 7.48e-70 238
Msa0119460 MtrunA17_Chr7g0240371 45.545 303 127 8 153 442 129 406 2.15e-69 234
Msa0119460 MtrunA17_Chr2g0327021 40.312 320 167 6 112 418 203 511 3.87e-66 228
Msa0119460 MtrunA17_Chr1g0151681 35.563 284 153 5 162 432 244 510 1.91e-49 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119460 AT2G35940.3 51.018 737 216 25 1 649 1 680 0.0 566
Msa0119460 AT2G35940.1 51.018 737 216 25 1 649 1 680 0.0 566
Msa0119460 AT2G35940.2 51.018 737 216 25 1 649 1 680 0.0 566
Msa0119460 AT2G16400.1 53.898 295 117 4 144 436 97 374 1.30e-97 308
Msa0119460 AT4G34610.2 52.050 317 126 6 124 428 94 396 7.22e-94 300
Msa0119460 AT4G34610.4 52.050 317 126 6 124 428 94 396 7.22e-94 300
Msa0119460 AT4G34610.3 52.050 317 126 6 124 428 94 396 7.22e-94 300
Msa0119460 AT4G34610.1 52.050 317 126 6 124 428 94 396 7.22e-94 300
Msa0119460 AT1G19700.1 56.884 276 106 6 152 420 156 425 6.51e-93 298
Msa0119460 AT1G19700.3 56.884 276 106 6 152 420 156 425 6.51e-93 298
Msa0119460 AT1G19700.5 56.884 276 106 6 152 420 156 425 6.51e-93 298
Msa0119460 AT1G19700.4 56.884 276 106 6 152 420 156 425 6.51e-93 298
Msa0119460 AT1G19700.2 56.884 276 106 6 152 420 156 425 6.51e-93 298
Msa0119460 AT1G75410.1 53.448 290 121 6 156 441 162 441 3.61e-92 295
Msa0119460 AT1G75410.2 53.448 290 121 6 156 441 162 441 3.61e-92 295
Msa0119460 AT2G27220.1 47.230 343 138 8 163 495 78 387 7.04e-85 273
Msa0119460 AT2G27220.3 47.230 343 138 8 163 495 78 387 7.04e-85 273
Msa0119460 AT2G27220.2 44.875 361 138 9 163 495 78 405 5.18e-81 263
Msa0119460 AT4G36870.2 47.797 295 133 4 161 442 312 598 4.81e-79 266
Msa0119460 AT4G36870.1 47.797 295 133 4 161 442 312 598 4.81e-79 266
Msa0119460 AT2G23760.2 52.045 269 110 4 155 413 232 491 6.43e-78 260
Msa0119460 AT2G23760.1 52.045 269 110 4 155 413 232 491 6.43e-78 260
Msa0119460 AT2G23760.3 52.045 269 110 4 155 413 232 491 6.43e-78 260
Msa0119460 AT1G75410.3 53.719 242 98 6 156 393 162 393 1.27e-73 243
Msa0119460 AT5G41410.1 45.423 284 118 4 164 422 196 467 2.02e-72 245
Msa0119460 AT2G23760.4 43.614 321 110 5 155 413 232 543 5.06e-68 235
Msa0119460 AT1G75430.1 42.125 273 143 6 155 419 10 275 4.28e-64 214
Msa0119460 AT5G02030.1 40.798 326 154 6 100 416 123 418 2.24e-63 220
Msa0119460 AT4G36870.4 47.325 243 111 3 161 394 312 546 4.03e-63 219
Msa0119460 AT4G36870.3 46.888 241 111 3 161 392 312 544 6.87e-62 216
Msa0119460 AT4G32980.1 36.422 313 170 6 126 425 154 450 4.00e-54 192
Msa0119460 AT4G32980.2 36.422 313 170 6 126 425 154 450 4.00e-54 192
Msa0119460 AT2G27990.1 37.538 325 157 8 107 418 205 496 9.01e-52 188
Msa0119460 AT1G75430.2 36.283 226 129 6 155 372 10 228 8.41e-36 136
Msa0119460 AT2G27990.2 31.183 279 146 9 107 372 205 450 1.27e-25 110

Find 201 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCGAACGGCTGTGTTTC+GGG 0.141930 1_3:-43498448 Msa0119460:CDS
GAACAAATTTCAATGAAATT+TGG 0.179649 1_3:-43495352 Msa0119460:CDS
TTCTTCCTAGTTGGATGTTT+TGG 0.189737 1_3:+43495116 None:intergenic
GCTTCACGCGCCGCTGAATT+AGG 0.196754 1_3:+43498562 None:intergenic
CCTCATTGTGACACATTATC+AGG 0.219156 1_3:-43495163 Msa0119460:CDS
ACTAATTTCATTGCTGGTTT+TGG 0.222320 1_3:-43495283 Msa0119460:CDS
GTGGTGGAGGGAAGTGTTGC+CGG 0.239922 1_3:+43498732 None:intergenic
TAAAAGAAAGTGGTAGTAAT+TGG 0.242310 1_3:+43494448 None:intergenic
GATGAAGTTGTTAATGTTAA+TGG 0.243321 1_3:-43498370 Msa0119460:CDS
GAAATCTATGTGTTTACTTC+GGG 0.256611 1_3:-43494739 Msa0119460:three_prime_UTR
TGCTTCGAACGGCTGTGTTT+CGG 0.260367 1_3:-43498449 Msa0119460:CDS
CATAGGGATTTGAAAGTATA+TGG 0.277303 1_3:-43494620 Msa0119460:three_prime_UTR
TAAATGCTCGAGTTCGTCTT+TGG 0.292125 1_3:-43495735 Msa0119460:CDS
AATTGTGCGGCAAACCTCTT+TGG 0.296812 1_3:+43495022 None:intergenic
TAATGTTAATGGTGGGATTA+AGG 0.300957 1_3:-43498359 Msa0119460:CDS
TATGGTAACAGGTTTCAAAT+TGG 0.310497 1_3:-43495762 Msa0119460:intron
AACCAAACTAATTTCATTGC+TGG 0.316269 1_3:-43495289 Msa0119460:CDS
AACCAGCAATGAAATTAGTT+TGG 0.317050 1_3:+43495287 None:intergenic
CCGGCGTGTGGCGGCGGCTG+CGG 0.320508 1_3:+43498790 None:intergenic
ATTATTAGTTGTTGTTTCAT+TGG 0.321824 1_3:+43495375 None:intergenic
TTTGAACAAGTTGCAGGAAT+TGG 0.325273 1_3:-43496844 Msa0119460:CDS
CTGTTTCTGTTCTTCGTGCT+TGG 0.327008 1_3:-43496570 Msa0119460:CDS
TTCTCTTACTGCAGGGAATC+TGG 0.343902 1_3:-43494799 Msa0119460:three_prime_UTR
ACAAAGAGCTATTCAACAAT+TGG 0.347219 1_3:-43496644 Msa0119460:CDS
TGGTGGAGGGAAGTGTTGCC+GGG 0.348095 1_3:+43498733 None:intergenic
GTGAATGTTAGAAACAATTC+AGG 0.352767 1_3:-43495490 Msa0119460:CDS
TCCTCATTTGAACAAGTTGC+AGG 0.353401 1_3:-43496850 Msa0119460:CDS
TCATGGTTCCTTGTTCGCTT+TGG 0.356835 1_3:+43495427 None:intergenic
TAGAGATGGTTATTGTTTCA+TGG 0.358531 1_3:-43495314 Msa0119460:CDS
GGAAGTGTTGCCGGGGTGAT+TGG 0.360547 1_3:+43498741 None:intergenic
TTGTTTGGAATTGAAACTTT+TGG 0.360991 1_3:+43495561 None:intergenic
CTTATTTATGCCACAAAATC+CGG 0.365359 1_3:+43494995 None:intergenic
TCTGGTGTTGTTGGTGGTGG+AGG 0.367290 1_3:+43498719 None:intergenic
GGAACTCTTTCTTGTGGAGT+TGG 0.373552 1_3:+43495601 None:intergenic
AACCATAGGAATGTCTTGTT+TGG 0.375205 1_3:+43495546 None:intergenic
TGGCGGCGGCTGCGGCGCGT+CGG 0.387133 1_3:+43498798 None:intergenic
TGTTTAAAAGATGCAATTAC+CGG 0.390768 1_3:-43496766 Msa0119460:CDS
CAAAACAAACAGGACTTACT+AGG 0.391251 1_3:-43495900 Msa0119460:CDS
CTTCACGCGCCGCTGAATTA+GGG 0.391599 1_3:+43498563 None:intergenic
TTATATATATGATCTATGTT+TGG 0.396100 1_3:+43499925 None:intergenic
TTTCTAACATTCACACCAAC+AGG 0.398194 1_3:+43495499 None:intergenic
CTTTCAGGCAATCCTCTTTG+AGG 0.398269 1_3:+43496595 None:intergenic
CATGAGGTTTCTGCTTTGCA+TGG 0.403905 1_3:-43498628 Msa0119460:CDS
TGTCCAATCTTCTTCCTAGT+TGG 0.406313 1_3:+43495107 None:intergenic
TGTATAAAGAAAGAAGGAAT+TGG 0.408121 1_3:-43494697 Msa0119460:three_prime_UTR
TTCAGCTTCACGGAACTTGA+TGG 0.410535 1_3:-43495466 Msa0119460:CDS
GTTTGCCGCACAATTGTTAC+CGG 0.411095 1_3:-43495014 Msa0119460:CDS
GACTCTGGTGTTGTTGGTGG+TGG 0.411364 1_3:+43498716 None:intergenic
AGGAAATCACCATCTGCATT+TGG 0.411597 1_3:+43496869 None:intergenic
TTGGATTCTGTTTCCGAGGT+TGG 0.416477 1_3:+43495580 None:intergenic
TCATTGGACTTCACATGATT+CGG 0.418133 1_3:+43495391 None:intergenic
ATTGGCGAAACAAATGAGTT+TGG 0.419488 1_3:-43495085 Msa0119460:CDS
GAGATAGACTCTGGTGTTGT+TGG 0.420973 1_3:+43498710 None:intergenic
CGTGTACCGGTTGGTGGGTC+GGG 0.422956 1_3:-43498478 Msa0119460:CDS
GCCGCTGAATTAGGGTCGGC+GGG 0.424159 1_3:+43498571 None:intergenic
GGGCGAGGACGCGCGTGTAC+CGG 0.425407 1_3:-43498491 Msa0119460:CDS
TTATATCATAAAGTTTCAAT+TGG 0.431070 1_3:-43494548 Msa0119460:three_prime_UTR
AGTGGAGAAGGTGGTTCTGT+TGG 0.435026 1_3:-43498274 Msa0119460:CDS
AGAACAGAAACAGATCTTTC+AGG 0.435978 1_3:+43496580 None:intergenic
GGTGGTTCTGTTGGTGGTGA+TGG 0.436016 1_3:-43498265 Msa0119460:CDS
TGAAATCTATGTGTTTACTT+CGG 0.438885 1_3:-43494740 Msa0119460:three_prime_UTR
TGAAGCTACACGCGCTACTC+AGG 0.440648 1_3:-43498545 Msa0119460:CDS
CATGTGTTTGTCTGAATCCT+TGG 0.446993 1_3:+43495927 None:intergenic
CCGCAGCCGCCGCCACACGC+CGG 0.448334 1_3:-43498790 Msa0119460:CDS
GAATCTTCAACTGCGGTTAG+TGG 0.448461 1_3:-43498292 Msa0119460:CDS
TCTGTTGGTGGTGATGGAAA+TGG 0.449581 1_3:-43498259 Msa0119460:CDS
CACATGCTTGCAAAACAAAC+AGG 0.449703 1_3:-43495910 Msa0119460:CDS
AGCTTTGGTGGCAAAATTGA+AGG 0.452290 1_3:-43496703 Msa0119460:CDS
AATCTTCCGATTTCCTCCAT+TGG 0.453150 1_3:+43495253 None:intergenic
AGCCTTCATGCTCAAGGGTC+GGG 0.453893 1_3:-43498511 Msa0119460:CDS
GAATTGGATTATTCTAGTAT+AGG 0.454575 1_3:-43494681 Msa0119460:three_prime_UTR
GAACTCAAATGGTTCTATGC+AGG 0.455814 1_3:+43494651 None:intergenic
GGAGAAGGTGGTTCTGTTGG+TGG 0.458519 1_3:-43498271 Msa0119460:CDS
GAGGTCTCCAAGCATTATGA+TGG 0.458928 1_3:+43496614 None:intergenic
TTAGGAGAAGATGATAGCTT+TGG 0.460008 1_3:-43496718 Msa0119460:CDS
TCCTGCAACTTGTTCAAATG+AGG 0.461576 1_3:+43496849 None:intergenic
AGGGAAATAGATGATACAAT+CGG 0.464146 1_3:-43494965 Msa0119460:three_prime_UTR
TCACGCGCCACCACAGTTTG+TGG 0.464248 1_3:-43498689 Msa0119460:CDS
AGAGATGGTTATTGTTTCAT+GGG 0.464621 1_3:-43495313 Msa0119460:CDS
ATGTACATTTCTTCCACCAT+TGG 0.467692 1_3:+43495709 None:intergenic
CATCCAACTAGGAAGAAGAT+TGG 0.468712 1_3:-43495110 Msa0119460:CDS
AATGGTGTTTCACTCACTCT+TGG 0.469626 1_3:-43495190 Msa0119460:CDS
CACGCGCCACCACAGTTTGT+GGG 0.472024 1_3:-43498688 Msa0119460:CDS
CCCTTGAGCATGAAGGCTTA+AGG 0.473961 1_3:+43498516 None:intergenic
AGGTTACCGGCGTGTGGCGG+CGG 0.475653 1_3:+43498784 None:intergenic
GGAGAAGATGATAGCTTTGG+TGG 0.477392 1_3:-43496715 Msa0119460:CDS
CAAAGAGCTATTCAACAATT+GGG 0.478974 1_3:-43496643 Msa0119460:CDS
GCGTGTACCGGTTGGTGGGT+CGG 0.480128 1_3:-43498479 Msa0119460:CDS
AAAAGAGAAAGAGAGAGAGA+GGG 0.481244 1_3:+43500309 None:intergenic
CAATATCCAATGGAGGAAAT+CGG 0.481438 1_3:-43495259 Msa0119460:CDS
CATAAAACATATATTCTCAA+TGG 0.482468 1_3:+43494505 None:intergenic
TGGCATAAATAAGACATTGA+AGG 0.484822 1_3:-43494985 Msa0119460:exon
TAGAGATTGTTTGTAGTGCT+AGG 0.486136 1_3:+43496800 None:intergenic
GGGAAATAGATGATACAATC+GGG 0.489001 1_3:-43494964 Msa0119460:three_prime_UTR
ACATAGATCATATATATAAG+AGG 0.491525 1_3:-43499921 Msa0119460:intron
TCGGTGATTGAAGAATTTCA+TGG 0.493060 1_3:+43495410 None:intergenic
AACTTTCAGTTTCAAGTGGA+AGG 0.494177 1_3:-43499965 Msa0119460:intron
TTGAGTTCTTAGATAGCATA+GGG 0.494340 1_3:-43494636 Msa0119460:three_prime_UTR
TCCTTAAGCCTTCATGCTCA+AGG 0.496662 1_3:-43498517 Msa0119460:CDS
ATGCTATCTAAGAACTCAAA+TGG 0.497030 1_3:+43494640 None:intergenic
GACGCGCGTGTACCGGTTGG+TGG 0.497433 1_3:-43498484 Msa0119460:CDS
AAAATATGAAAATGTAATTG+AGG 0.497842 1_3:+43500414 None:intergenic
GTGGCAAAATTGAAGGGTCT+AGG 0.499962 1_3:-43496696 Msa0119460:CDS
TTGTAGTGCTAGGGCAGTGT+AGG 0.500467 1_3:+43496810 None:intergenic
GATGAACCCGACCCACCAAC+CGG 0.501192 1_3:+43498472 None:intergenic
GATTTGAAAGTATATGGTTG+AGG 0.502878 1_3:-43494614 Msa0119460:three_prime_UTR
CGCCCGACCCTTGAGCATGA+AGG 0.506222 1_3:+43498509 None:intergenic
AGAGCTGCGAATAAAAGCTT+AGG 0.506812 1_3:-43496736 Msa0119460:CDS
GAATGATCCATCATAATGCT+TGG 0.508715 1_3:-43496621 Msa0119460:CDS
TTCCAAACAAGACATTCCTA+TGG 0.509814 1_3:-43495548 Msa0119460:CDS
CTGATTGTTCTGCCGAGAGC+GGG 0.510732 1_3:+43498662 None:intergenic
CTGGTGTTGTTGGTGGTGGA+GGG 0.510824 1_3:+43498720 None:intergenic
AATGTACATGGAAGAGATGA+AGG 0.511291 1_3:-43495695 Msa0119460:CDS
GAGAAACACAATCATTGCTA+TGG 0.514493 1_3:+43494774 None:intergenic
AACTCAAATGGTTCTATGCA+GGG 0.514516 1_3:+43494652 None:intergenic
CATAATAATTCAGAAATCCA+AGG 0.518498 1_3:-43498880 Msa0119460:CDS
CAATTCAGGATTCAGCTTCA+CGG 0.521074 1_3:-43495476 Msa0119460:CDS
ACGCGCCACCACAGTTTGTG+GGG 0.522432 1_3:-43498687 Msa0119460:CDS
TTGTAGTGTATAAAGAAAGA+AGG 0.523070 1_3:-43494703 Msa0119460:three_prime_UTR
CGCCGCTGAATTAGGGTCGG+CGG 0.525952 1_3:+43498570 None:intergenic
ACACCAACAGGTGAAGTTGA+TGG 0.527328 1_3:+43495511 None:intergenic
AAGCCTTCATGCTCAAGGGT+CGG 0.527727 1_3:-43498512 Msa0119460:CDS
TCATGAAAATGAGTGTTTGA+AGG 0.530375 1_3:+43498845 None:intergenic
CAATTTACATCACAATCTGC+AGG 0.534042 1_3:-43499645 Msa0119460:intron
ATGTACGCTTCTCTTACTGC+AGG 0.535012 1_3:-43494807 Msa0119460:three_prime_UTR
AGAGATTGTTTGTAGTGCTA+GGG 0.537105 1_3:+43496801 None:intergenic
ATAGACTCTGGTGTTGTTGG+TGG 0.538074 1_3:+43498713 None:intergenic
GGCATAAATAAGACATTGAA+GGG 0.538304 1_3:-43494984 Msa0119460:exon
ATGTGTTTGTCTGAATCCTT+GGG 0.538305 1_3:+43495928 None:intergenic
TCATGCTCAAGGGTCGGGCG+AGG 0.542698 1_3:-43498506 Msa0119460:CDS
CTTCGAACGGCTGTGTTTCG+GGG 0.542729 1_3:-43498447 Msa0119460:CDS
CCTTAAGCCTTCATGCTCAA+GGG 0.545802 1_3:-43498516 Msa0119460:CDS
AACAGGACTTACTAGGAGCC+AGG 0.547114 1_3:-43495893 Msa0119460:intron
TCAACTGCGGTTAGTGGAGA+AGG 0.547613 1_3:-43498286 Msa0119460:CDS
TTATTATTACCTGAAAACCT+TGG 0.548405 1_3:+43495211 None:intergenic
GTTAATTAACATGCTTGATG+AGG 0.549695 1_3:-43498176 Msa0119460:intron
AGAAGCGTACATTTACATGT+TGG 0.550105 1_3:+43494818 None:intergenic
ATTCGCAGCTCTAATTTGGC+CGG 0.550635 1_3:+43496747 None:intergenic
TTTCATTGAAGGATCTTCAT+CGG 0.552364 1_3:+43495627 None:intergenic
TTTGAGTTCTTAGATAGCAT+AGG 0.555623 1_3:-43494637 Msa0119460:three_prime_UTR
AAGCAAGTCCAAAGCGAACA+AGG 0.556607 1_3:-43495435 Msa0119460:CDS
CCAAACCAAAACATCCAACT+AGG 0.560227 1_3:-43495121 Msa0119460:CDS
AGTTCGTCTTTGGAAACCAA+TGG 0.560987 1_3:-43495725 Msa0119460:CDS
GATGATAGACAAAGTAGAGA+TGG 0.562540 1_3:-43495328 Msa0119460:CDS
AAATATGAAAATGTAATTGA+GGG 0.562854 1_3:+43500415 None:intergenic
ATGAAGGATCAAGAGATGAA+TGG 0.565783 1_3:-43495679 Msa0119460:CDS
GAGTAATTGATGTAACCTGA+TGG 0.567818 1_3:+43498820 None:intergenic
GAAGTTGTTAATGTTAATGG+TGG 0.567999 1_3:-43498367 Msa0119460:CDS
GTTTGGTTTCAGTTATCCCA+AGG 0.571345 1_3:-43495944 Msa0119460:intron
GAAGGCCGTCAGAACCACCT+TGG 0.574186 1_3:+43498863 None:intergenic
GAAATCCAAGGTGGTTCTGA+CGG 0.578996 1_3:-43498868 Msa0119460:CDS
ATTCAACTTTCAGTTTCAAG+TGG 0.580110 1_3:-43499969 Msa0119460:intron
CGCGCATGCAGTACAACATG+TGG 0.583615 1_3:-43498597 Msa0119460:CDS
ACACCATCAACTTCACCTGT+TGG 0.590840 1_3:-43495514 Msa0119460:CDS
TGTTGTACTGCATGCGCGGT+GGG 0.595977 1_3:+43498602 None:intergenic
TAATATATATTTCTTAGCAT+AGG 0.597273 1_3:-43500356 Msa0119460:five_prime_UTR
AAATCTATGTGTTTACTTCG+GGG 0.600483 1_3:-43494738 Msa0119460:three_prime_UTR
GAAGCTACACGCGCTACTCA+GGG 0.605973 1_3:-43498544 Msa0119460:CDS
ACGCGCGTGTACCGGTTGGT+GGG 0.606056 1_3:-43498483 Msa0119460:CDS
TGTTGGAGAATCTTCAACTG+CGG 0.611838 1_3:-43498299 Msa0119460:CDS
CCCCGCCGACCCTAATTCAG+CGG 0.612266 1_3:-43498572 Msa0119460:CDS
TCAAGAGATGAATGGTTCTG+AGG 0.612838 1_3:-43495671 Msa0119460:CDS
AATGGTGGAAGAAATGTACA+TGG 0.614228 1_3:-43495707 Msa0119460:CDS
TCGGGTTCATCTGCTTCGAA+CGG 0.615029 1_3:-43498460 Msa0119460:CDS
TCGTCTTTGGAAACCAATGG+TGG 0.617524 1_3:-43495722 Msa0119460:CDS
TGCGAGATGCAATCATCGCA+AGG 0.618956 1_3:+43494930 None:intergenic
TCGGCAGAACAATCAGTACA+TGG 0.621271 1_3:-43498655 Msa0119460:CDS
ACGCGCCGCTGAATTAGGGT+CGG 0.621487 1_3:+43498567 None:intergenic
GAGGACGCGCGTGTACCGGT+TGG 0.623612 1_3:-43498487 Msa0119460:CDS
GAGGTTGGAACTCTTTCTTG+TGG 0.623921 1_3:+43495595 None:intergenic
GCTTTGGTGGCAAAATTGAA+GGG 0.625009 1_3:-43496702 Msa0119460:CDS
AATATGAAAATGTAATTGAG+GGG 0.625866 1_3:+43500416 None:intergenic
CGCGCCACCACAGTTTGTGG+GGG 0.626295 1_3:-43498686 Msa0119460:CDS
AAGTTGTTAATGTTAATGGT+GGG 0.628751 1_3:-43498366 Msa0119460:CDS
GCAAAGCAGAAACCTCATGA+TGG 0.629561 1_3:+43498632 None:intergenic
ATATCACAACCAAATGCAGA+TGG 0.632389 1_3:-43496878 Msa0119460:CDS
CACATGTTGTACTGCATGCG+CGG 0.634344 1_3:+43498598 None:intergenic
ATCAGTACATGGCCATCATG+AGG 0.634995 1_3:-43498644 Msa0119460:CDS
TCAACATGCAGAATCCAAAG+AGG 0.639986 1_3:-43495036 Msa0119460:CDS
ACTGATTGTTCTGCCGAGAG+CGG 0.645804 1_3:+43498661 None:intergenic
GGTGTTGAAACTGAAACCAT+AGG 0.645975 1_3:+43495532 None:intergenic
ACAAGGTTACCGGCGTGTGG+CGG 0.649540 1_3:+43498781 None:intergenic
AAAACAAGGTTACCGGCGTG+TGG 0.650178 1_3:+43498778 None:intergenic
ACTGCGGTTAGTGGAGAAGG+TGG 0.650559 1_3:-43498283 Msa0119460:CDS
ACGCGGAACAATTTGCACCA+AGG 0.650952 1_3:-43495228 Msa0119460:CDS
TGTACGCTTCTCTTACTGCA+GGG 0.650978 1_3:-43494806 Msa0119460:three_prime_UTR
GGTGGAGGGAAGTGTTGCCG+GGG 0.656423 1_3:+43498734 None:intergenic
GGAAATAGATGATACAATCG+GGG 0.660049 1_3:-43494963 Msa0119460:three_prime_UTR
CCTGATAATGTGTCACAATG+AGG 0.665244 1_3:+43495163 None:intergenic
CTAGGAAGAAGATTGGACAT+TGG 0.666627 1_3:-43495103 Msa0119460:CDS
AACTCAGCTGCCAATCACCC+CGG 0.666884 1_3:-43498751 Msa0119460:CDS
TGTGAATAGATCAAAACATG+AGG 0.668986 1_3:+43500174 None:intergenic
ACAAGAAAGAGTTCCAACCT+CGG 0.675024 1_3:-43495593 Msa0119460:CDS
AAAATCCGGTAACAATTGTG+CGG 0.678724 1_3:+43495009 None:intergenic
GTGGCGCGTGAGATAGACTC+TGG 0.681034 1_3:+43498701 None:intergenic
ATGTTGTACTGCATGCGCGG+TGG 0.691285 1_3:+43498601 None:intergenic
AATGCTTGGAGACCTCAAAG+AGG 0.697679 1_3:-43496607 Msa0119460:CDS
AATAATTCAGAAATCCAAGG+TGG 0.720775 1_3:-43498877 Msa0119460:CDS
GAAATAGATGATACAATCGG+GGG 0.724064 1_3:-43494962 Msa0119460:three_prime_UTR
GGAAATCGGAAGATTTGACG+CGG 0.730505 1_3:-43495245 Msa0119460:CDS
CCGCTGAATTAGGGTCGGCG+GGG 0.731123 1_3:+43498572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATCATATAATTCAATA+TGG - chr1_3:43495555-43495574 Msa0119460:CDS 10.0%
!!! ACTCAAATTTATTTAATTTT+TGG - chr1_3:43497105-43497124 Msa0119460:intron 10.0%
!! AAAAAAAGGATAAAAAAAAA+CGG + chr1_3:43497408-43497427 None:intergenic 10.0%
!! AAAAAAAAGGATAAAAAAAA+CGG + chr1_3:43497409-43497428 None:intergenic 10.0%
!!! TTTTTATCCTTTTTTTTTTA+AGG - chr1_3:43497514-43497533 Msa0119460:intron 10.0%
!!! AAATCTAAAAACTAAAATTT+TGG + chr1_3:43497727-43497746 None:intergenic 10.0%
!!! TTTCTATTTTTTTTTTTTTG+TGG + chr1_3:43497864-43497883 None:intergenic 10.0%
!! TTAAAAAATTACTAAATTGA+CGG + chr1_3:43498475-43498494 None:intergenic 10.0%
!! AAATATGAAAATGTAATTGA+GGG + chr1_3:43494468-43494487 None:intergenic 15.0%
!! AAAATATGAAAATGTAATTG+AGG + chr1_3:43494469-43494488 None:intergenic 15.0%
!! TAATATATATTTCTTAGCAT+AGG - chr1_3:43494524-43494543 Msa0119460:three_prime_UTR 15.0%
!!! TTTTTCATAATTGAAATTCT+GGG + chr1_3:43494825-43494844 None:intergenic 15.0%
!!! TTTTTTCATAATTGAAATTC+TGG + chr1_3:43494826-43494845 None:intergenic 15.0%
!! TTATATATATGATCTATGTT+TGG + chr1_3:43494958-43494977 None:intergenic 15.0%
!!! CTGTAAAATATATATTGTTT+TGG - chr1_3:43495078-43495097 Msa0119460:CDS 15.0%
!!! AAAATATATATTGTTTTGGT+AGG - chr1_3:43495082-43495101 Msa0119460:CDS 15.0%
!!! AAATAGAAATCTTTTGTTTT+TGG + chr1_3:43495144-43495163 None:intergenic 15.0%
!!! AATTTGAATTTTCCAAATTA+AGG + chr1_3:43495530-43495549 None:intergenic 15.0%
!!! AAAAGTATAATCAATTAACA+TGG + chr1_3:43495594-43495613 None:intergenic 15.0%
!! GATATAAAAAAAACATTATG+TGG + chr1_3:43495766-43495785 None:intergenic 15.0%
!! AGTAACAAAAAAAAAATTGA+TGG - chr1_3:43495966-43495985 Msa0119460:intron 15.0%
!!! GAGTTAATTAAATTTAGTTT+TGG - chr1_3:43496735-43496754 Msa0119460:CDS 15.0%
!!! TTTACTTTTAAGTATGATTA+AGG - chr1_3:43496971-43496990 Msa0119460:intron 15.0%
!!! AGAATTTATGTTTTTTAGAA+TGG - chr1_3:43497003-43497022 Msa0119460:intron 15.0%
!! CATAAAAAAAAAAATATGCA+AGG - chr1_3:43497293-43497312 Msa0119460:intron 15.0%
!!! TTTATCCTTTTTTTTTTTGA+AGG - chr1_3:43497414-43497433 Msa0119460:intron 15.0%
!! ATTGTTTCCTTAAAAAAAAA+AGG + chr1_3:43497524-43497543 None:intergenic 15.0%
!! TGTTTCCTTAAAAAAAAAAA+CGG + chr1_3:43497620-43497639 None:intergenic 15.0%
!!! TAAAAACTAAAATTTTGGAA+AGG + chr1_3:43497722-43497741 None:intergenic 15.0%
!!! TCTATCATTTTAAAATTCTA+AGG - chr1_3:43497761-43497780 Msa0119460:intron 15.0%
!! ATACTAAAAATGAATTAATG+TGG - chr1_3:43497933-43497952 Msa0119460:intron 15.0%
!!! TAAAAGAGATATTTTGATTA+AGG - chr1_3:43498595-43498614 Msa0119460:CDS 15.0%
!!! AAAAGAGATATTTTGATTAA+GGG - chr1_3:43498596-43498615 Msa0119460:CDS 15.0%
!! TTCAAAGTTGAAAAATATTA+TGG - chr1_3:43498881-43498900 Msa0119460:CDS 15.0%
!! TTATATCATAAAGTTTCAAT+TGG - chr1_3:43500332-43500351 Msa0119460:five_prime_UTR 15.0%
!! ATAAGAAAAATAAAAGAAAG+TGG + chr1_3:43500445-43500464 None:intergenic 15.0%
!! AATATGAAAATGTAATTGAG+GGG + chr1_3:43494467-43494486 None:intergenic 20.0%
!!! ATTTTTTGTCCATAAATGAT+TGG - chr1_3:43494851-43494870 Msa0119460:intron 20.0%
!! TCATATTATCCAATCATTTA+TGG + chr1_3:43494863-43494882 None:intergenic 20.0%
!! ACATAGATCATATATATAAG+AGG - chr1_3:43494959-43494978 Msa0119460:three_prime_UTR 20.0%
!!! AAAAGATTTCTATTTCTCAT+AGG - chr1_3:43495149-43495168 Msa0119460:CDS 20.0%
!!! TTTTCTTTTAGTACAGAAAA+AGG + chr1_3:43495381-43495400 None:intergenic 20.0%
!! ATTTCATCTATACCTTAATT+TGG - chr1_3:43495515-43495534 Msa0119460:CDS 20.0%
!! ATAATCAATTAACATGGTAT+TGG + chr1_3:43495588-43495607 None:intergenic 20.0%
!! AATTTGATAGGAACTAAATT+TGG + chr1_3:43496833-43496852 None:intergenic 20.0%
!! TTAATTCATGTTTGATTCTA+TGG + chr1_3:43497213-43497232 None:intergenic 20.0%
!! TGTTTCCTTCAAAAAAAAAA+AGG + chr1_3:43497422-43497441 None:intergenic 20.0%
!!! AATTGTTCATTGGTTTTTTT+TGG + chr1_3:43497585-43497604 None:intergenic 20.0%
!!! CTTAAAAAAAAAAACGGATT+CGG + chr1_3:43497614-43497633 None:intergenic 20.0%
!!! TCTTGCAAATACTTTTTTTA+TGG + chr1_3:43497819-43497838 None:intergenic 20.0%
!!! AATGTATTCAGGTTTTTTAT+TGG - chr1_3:43498559-43498578 Msa0119460:CDS 20.0%
!!! AAAGAGATATTTTGATTAAG+GGG - chr1_3:43498597-43498616 Msa0119460:CDS 20.0%
!!! GAGACATATTTCATATATTT+TGG + chr1_3:43498751-43498770 None:intergenic 20.0%
!! TATTGATCATGTTAACAATA+TGG - chr1_3:43499100-43499119 Msa0119460:intron 20.0%
!!! ATTATTAGTTGTTGTTTCAT+TGG + chr1_3:43499508-43499527 None:intergenic 20.0%
!! GAACAAATTTCAATGAAATT+TGG - chr1_3:43499528-43499547 Msa0119460:intron 20.0%
!!! ATTTTTGTAAGTTTTGAAGA+TGG - chr1_3:43500298-43500317 Msa0119460:five_prime_UTR 20.0%
!!! TTTTTGTAAGTTTTGAAGAT+GGG - chr1_3:43500299-43500318 Msa0119460:five_prime_UTR 20.0%
!! CATAAAACATATATTCTCAA+TGG + chr1_3:43500378-43500397 None:intergenic 20.0%
!!! CATTGAGAATATATGTTTTA+TGG - chr1_3:43500376-43500395 Msa0119460:five_prime_UTR 20.0%
!!! ATCTTTCTATAGCCTTTTTT+GGG + chr1_3:43494743-43494762 None:intergenic 25.0%
!!! TATCTTTCTATAGCCTTTTT+TGG + chr1_3:43494744-43494763 None:intergenic 25.0%
!! TGTGTTGAAATTTTGTGAAA+GGG + chr1_3:43494800-43494819 None:intergenic 25.0%
!! ATGTGTTGAAATTTTGTGAA+AGG + chr1_3:43494801-43494820 None:intergenic 25.0%
! AGATCATATATATAAGAGGT+TGG - chr1_3:43494963-43494982 Msa0119460:three_prime_UTR 25.0%
! TATAAGGACTTAAAAAGGAA+AGG + chr1_3:43495451-43495470 None:intergenic 25.0%
! GACTATATAAGGACTTAAAA+AGG + chr1_3:43495456-43495475 None:intergenic 25.0%
!! AAATTCTTTTAATCACATGG+TGG + chr1_3:43495478-43495497 None:intergenic 25.0%
!! TGCAAATTCTTTTAATCACA+TGG + chr1_3:43495481-43495500 None:intergenic 25.0%
! TCTCAATAATTGAAGAAGAA+TGG + chr1_3:43495668-43495687 None:intergenic 25.0%
! AAATTCACAATTTGACATCT+TGG + chr1_3:43495860-43495879 None:intergenic 25.0%
! CATAATAATTCAGAAATCCA+AGG - chr1_3:43496000-43496019 Msa0119460:intron 25.0%
! GATGAAGTTGTTAATGTTAA+TGG - chr1_3:43496510-43496529 Msa0119460:intron 25.0%
! AAGTTGTTAATGTTAATGGT+GGG - chr1_3:43496514-43496533 Msa0119460:intron 25.0%
!!! GAAGAGTTTTGAGAAAAATA+AGG - chr1_3:43496557-43496576 Msa0119460:CDS 25.0%
! TTTGAGAAAAATAAGGTTGT+TGG - chr1_3:43496564-43496583 Msa0119460:CDS 25.0%
! CTTGAAAGAACAAATTTGAT+AGG + chr1_3:43496845-43496864 None:intergenic 25.0%
!!! TGTTTTTTTGACAGATAGAA+TGG - chr1_3:43497034-43497053 Msa0119460:intron 25.0%
!! GAATGGTTTTTATGCAAAAT+AGG - chr1_3:43497051-43497070 Msa0119460:intron 25.0%
! AAAAAAAAATATGCAAGGTC+CGG - chr1_3:43497298-43497317 Msa0119460:intron 25.0%
!! AGGATAAAAAAAAACGGATT+CGG + chr1_3:43497402-43497421 None:intergenic 25.0%
!!! ATTGGTAATTTTTTTTGTGG+TGG + chr1_3:43497482-43497501 None:intergenic 25.0%
!! AAGGATAAAAAAAACGGATT+CGG + chr1_3:43497505-43497524 None:intergenic 25.0%
!!! CGAATCCGTTTTTTTTTTTA+AGG - chr1_3:43497612-43497631 Msa0119460:intron 25.0%
!!! ACTAAAATTTTGGAAAGGAA+AGG + chr1_3:43497717-43497736 None:intergenic 25.0%
! ATGAATTAATGTGGTTTCTT+TGG - chr1_3:43497942-43497961 Msa0119460:intron 25.0%
! TGTTTAAAAGATGCAATTAC+CGG - chr1_3:43498114-43498133 Msa0119460:intron 25.0%
!!! AGGTTTTTTATTGGTTTTGA+TGG - chr1_3:43498568-43498587 Msa0119460:CDS 25.0%
!! TAAGTGACTAATTTGCAATT+TGG - chr1_3:43498645-43498664 Msa0119460:CDS 25.0%
! TTGCAATTTGGTAAATTTCA+AGG - chr1_3:43498657-43498676 Msa0119460:CDS 25.0%
!! TTTGGTCACTAATTTAACTT+TGG + chr1_3:43498733-43498752 None:intergenic 25.0%
!! CTAATTTTATTACCAAGTGT+TGG - chr1_3:43498770-43498789 Msa0119460:CDS 25.0%
! TCATCAAAATTGTCAAAAAC+AGG + chr1_3:43498857-43498876 None:intergenic 25.0%
!!! TTGTTTGGAATTGAAACTTT+TGG + chr1_3:43499322-43499341 None:intergenic 25.0%
! TTATTATTACCTGAAAACCT+TGG + chr1_3:43499672-43499691 None:intergenic 25.0%
!!! AGGTTTTCAGGTAATAATAA+TGG - chr1_3:43499672-43499691 Msa0119460:five_prime_UTR 25.0%
! TGAAATCTATGTGTTTACTT+CGG - chr1_3:43500140-43500159 Msa0119460:intron 25.0%
! TTGTAGTGTATAAAGAAAGA+AGG - chr1_3:43500177-43500196 Msa0119460:five_prime_UTR 25.0%
! TGTATAAAGAAAGAAGGAAT+TGG - chr1_3:43500183-43500202 Msa0119460:five_prime_UTR 25.0%
! GAATTGGATTATTCTAGTAT+AGG - chr1_3:43500199-43500218 Msa0119460:five_prime_UTR 25.0%
! TAAAAGAAAGTGGTAGTAAT+TGG + chr1_3:43500435-43500454 None:intergenic 25.0%
TGTGAATAGATCAAAACATG+AGG + chr1_3:43494709-43494728 None:intergenic 30.0%
!!! TCATGTTTTGATCTATTCAC+AGG - chr1_3:43494708-43494727 Msa0119460:three_prime_UTR 30.0%
!!! TCTTTCTATAGCCTTTTTTG+GGG + chr1_3:43494742-43494761 None:intergenic 30.0%
ATTCAACTTTCAGTTTCAAG+TGG - chr1_3:43494911-43494930 Msa0119460:three_prime_UTR 30.0%
! AAGCTTTTTACAAAGGATAG+TGG + chr1_3:43495409-43495428 None:intergenic 30.0%
! ACATTTTACCTTTGTGAATC+TGG + chr1_3:43495727-43495746 None:intergenic 30.0%
AATAATTCAGAAATCCAAGG+TGG - chr1_3:43496003-43496022 Msa0119460:intron 30.0%
TCATGAAAATGAGTGTTTGA+AGG + chr1_3:43496038-43496057 None:intergenic 30.0%
GAAGTTGTTAATGTTAATGG+TGG - chr1_3:43496513-43496532 Msa0119460:intron 30.0%
! TAATGTTAATGGTGGGATTA+AGG - chr1_3:43496521-43496540 Msa0119460:intron 30.0%
GTTAATTAACATGCTTGATG+AGG - chr1_3:43496704-43496723 Msa0119460:CDS 30.0%
! GTTCTTTCAAGTAATTGAGT+TGG - chr1_3:43496854-43496873 Msa0119460:CDS 30.0%
ATTCATGTTTGATTCTATGG+TGG + chr1_3:43497210-43497229 None:intergenic 30.0%
AAAAAAAATATGCAAGGTCC+GGG - chr1_3:43497299-43497318 Msa0119460:intron 30.0%
!!! TTTTTTTTTTGTGATGGTCG+GGG + chr1_3:43497360-43497379 None:intergenic 30.0%
!!! GTTTTTTTTTTGTGATGGTC+GGG + chr1_3:43497361-43497380 None:intergenic 30.0%
!!! GGTTTTTTTTTTGTGATGGT+CGG + chr1_3:43497362-43497381 None:intergenic 30.0%
!!! CATGGGTTTTTTTTTTGTGA+TGG + chr1_3:43497366-43497385 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1_3:43497397-43497416 None:intergenic 30.0%
!!! TAATTTTTTTTGTGGTGGCT+GGG + chr1_3:43497477-43497496 None:intergenic 30.0%
!!! CGGATTGGTAATTTTTTTTG+TGG + chr1_3:43497485-43497504 None:intergenic 30.0%
! TAAAAAAAACGGATTCGGAT+TGG + chr1_3:43497500-43497519 None:intergenic 30.0%
!!! TGTTCATTGGTTTTTTTTGG+TGG + chr1_3:43497582-43497601 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1_3:43497397-43497416 None:intergenic 30.0%
!! AAAATTTTGGAAAGGAAAGG+AGG + chr1_3:43497714-43497733 None:intergenic 30.0%
!!! TTTGGATTGTTTTGGTTTGA+AGG - chr1_3:43497960-43497979 Msa0119460:intron 30.0%
!! TTTTATTCGCAGCTCTAATT+TGG + chr1_3:43498140-43498159 None:intergenic 30.0%
ACAAAGAGCTATTCAACAAT+TGG - chr1_3:43498236-43498255 Msa0119460:CDS 30.0%
CAAAGAGCTATTCAACAATT+GGG - chr1_3:43498237-43498256 Msa0119460:CDS 30.0%
! AAAAGTATAGCGAGTACTTA+CGG + chr1_3:43498357-43498376 None:intergenic 30.0%
TCATTGAAGTCAATGTATTC+AGG - chr1_3:43498548-43498567 Msa0119460:CDS 30.0%
TTCGATCGTCGAATTTATAA+TGG + chr1_3:43498697-43498716 None:intergenic 30.0%
! TAAAATTAGTCTCCAACACT+TGG + chr1_3:43498785-43498804 None:intergenic 30.0%
CACTAAATAAAGAAGTAAGG+AGG + chr1_3:43499016-43499035 None:intergenic 30.0%
CGACACTAAATAAAGAAGTA+AGG + chr1_3:43499019-43499038 None:intergenic 30.0%
CATGTTAACAATATGGTAAC+AGG - chr1_3:43499107-43499126 Msa0119460:intron 30.0%
TATGGTAACAGGTTTCAAAT+TGG - chr1_3:43499118-43499137 Msa0119460:intron 30.0%
TTTCATTGAAGGATCTTCAT+CGG + chr1_3:43499256-43499275 None:intergenic 30.0%
GTGAATGTTAGAAACAATTC+AGG - chr1_3:43499390-43499409 Msa0119460:intron 30.0%
TAGAGATGGTTATTGTTTCA+TGG - chr1_3:43499566-43499585 Msa0119460:intron 30.0%
AGAGATGGTTATTGTTTCAT+GGG - chr1_3:43499567-43499586 Msa0119460:intron 30.0%
AACCAAACTAATTTCATTGC+TGG - chr1_3:43499591-43499610 Msa0119460:intron 30.0%
AACCAGCAATGAAATTAGTT+TGG + chr1_3:43499596-43499615 None:intergenic 30.0%
!!! ACTAATTTCATTGCTGGTTT+TGG - chr1_3:43499597-43499616 Msa0119460:intron 30.0%
CTTATTTATGCCACAAAATC+CGG + chr1_3:43499888-43499907 None:intergenic 30.0%
TGGCATAAATAAGACATTGA+AGG - chr1_3:43499895-43499914 Msa0119460:intron 30.0%
GGCATAAATAAGACATTGAA+GGG - chr1_3:43499896-43499915 Msa0119460:intron 30.0%
AGGGAAATAGATGATACAAT+CGG - chr1_3:43499915-43499934 Msa0119460:intron 30.0%
GAAATCTATGTGTTTACTTC+GGG - chr1_3:43500141-43500160 Msa0119460:intron 30.0%
AAATCTATGTGTTTACTTCG+GGG - chr1_3:43500142-43500161 Msa0119460:intron 30.0%
ATGCTATCTAAGAACTCAAA+TGG + chr1_3:43500243-43500262 None:intergenic 30.0%
! TTTGAGTTCTTAGATAGCAT+AGG - chr1_3:43500243-43500262 Msa0119460:five_prime_UTR 30.0%
TTGAGTTCTTAGATAGCATA+GGG - chr1_3:43500244-43500263 Msa0119460:five_prime_UTR 30.0%
! CATAGGGATTTGAAAGTATA+TGG - chr1_3:43500260-43500279 Msa0119460:five_prime_UTR 30.0%
! GATTTGAAAGTATATGGTTG+AGG - chr1_3:43500266-43500285 Msa0119460:five_prime_UTR 30.0%
AAAAGAGAAAGAGAGAGAGA+GGG + chr1_3:43494574-43494593 None:intergenic 35.0%
AAAAAGAGAAAGAGAGAGAG+AGG + chr1_3:43494575-43494594 None:intergenic 35.0%
!!! TTGGATCTATTTTTTTGGGG+GGG + chr1_3:43494606-43494625 None:intergenic 35.0%
!!! CTTGGATCTATTTTTTTGGG+GGG + chr1_3:43494607-43494626 None:intergenic 35.0%
!!! CCTTGGATCTATTTTTTTGG+GGG + chr1_3:43494608-43494627 None:intergenic 35.0%
!!! CCCTTGGATCTATTTTTTTG+GGG + chr1_3:43494609-43494628 None:intergenic 35.0%
CCCCAAAAAAATAGATCCAA+GGG - chr1_3:43494606-43494625 Msa0119460:three_prime_UTR 35.0%
!!! CCCCTTGGATCTATTTTTTT+GGG + chr1_3:43494610-43494629 None:intergenic 35.0%
CCCAAAAAAATAGATCCAAG+GGG - chr1_3:43494607-43494626 Msa0119460:three_prime_UTR 35.0%
CCAAAAAAATAGATCCAAGG+GGG - chr1_3:43494608-43494627 Msa0119460:three_prime_UTR 35.0%
!!! CTTTCTATAGCCTTTTTTGG+GGG + chr1_3:43494741-43494760 None:intergenic 35.0%
! AACTTTCAGTTTCAAGTGGA+AGG - chr1_3:43494915-43494934 Msa0119460:three_prime_UTR 35.0%
CAATTTACATCACAATCTGC+AGG - chr1_3:43495235-43495254 Msa0119460:CDS 35.0%
! CACATGGAAGCTTTTTACAA+AGG + chr1_3:43495416-43495435 None:intergenic 35.0%
AAGGAATGATGAGATACACA+TGG + chr1_3:43495432-43495451 None:intergenic 35.0%
!! ATCACATGGTGGACTATATA+AGG + chr1_3:43495467-43495486 None:intergenic 35.0%
TTTACCTTTGTGAATCTGGT+TGG + chr1_3:43495723-43495742 None:intergenic 35.0%
! CTCATTTTCATGAATCCATC+AGG - chr1_3:43496045-43496064 Msa0119460:intron 35.0%
GAGTAATTGATGTAACCTGA+TGG + chr1_3:43496063-43496082 None:intergenic 35.0%
GTTGAGAAAAACAAGGTTAC+CGG + chr1_3:43496112-43496131 None:intergenic 35.0%
!! CAAGTAATTGAGTTGGTAAC+TGG - chr1_3:43496861-43496880 Msa0119460:CDS 35.0%
GTTGGTCATGGGTTTAATAA+AGG + chr1_3:43497236-43497255 None:intergenic 35.0%
AAAAAAATATGCAAGGTCCG+GGG - chr1_3:43497300-43497319 Msa0119460:intron 35.0%
!! TCGGATTGGTAATTGTTCAT+GGG + chr1_3:43497383-43497402 None:intergenic 35.0%
!! TTCGGATTGGTAATTGTTCA+TGG + chr1_3:43497384-43497403 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_3:43497437-43497456 Msa0119460:intron 35.0%
!!! AATTTTTTTTGTGGTGGCTG+GGG + chr1_3:43497476-43497495 None:intergenic 35.0%
!!! GTAATTTTTTTTGTGGTGGC+TGG + chr1_3:43497478-43497497 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_3:43497437-43497456 Msa0119460:intron 35.0%
!! TCGGATTGGTAATTGTTCAT+TGG + chr1_3:43497383-43497402 None:intergenic 35.0%
TGTGCTAGTAACAAGTGAAA+TGG - chr1_3:43497682-43497701 Msa0119460:intron 35.0%
! GTGGTTTCTTTGGATTGTTT+TGG - chr1_3:43497952-43497971 Msa0119460:intron 35.0%
ATATCACAACCAAATGCAGA+TGG - chr1_3:43498002-43498021 Msa0119460:intron 35.0%
TTTGAACAAGTTGCAGGAAT+TGG - chr1_3:43498036-43498055 Msa0119460:intron 35.0%
AGAGATTGTTTGTAGTGCTA+GGG + chr1_3:43498082-43498101 None:intergenic 35.0%
TAGAGATTGTTTGTAGTGCT+AGG + chr1_3:43498083-43498102 None:intergenic 35.0%
TTAGGAGAAGATGATAGCTT+TGG - chr1_3:43498162-43498181 Msa0119460:intron 35.0%
GAATGATCCATCATAATGCT+TGG - chr1_3:43498259-43498278 Msa0119460:CDS 35.0%
AGAACAGAAACAGATCTTTC+AGG + chr1_3:43498303-43498322 None:intergenic 35.0%
TATTCGAAGGACTGAAATGA+CGG + chr1_3:43498443-43498462 None:intergenic 35.0%
TCAGTCCTTCGAATAGTATA+AGG - chr1_3:43498448-43498467 Msa0119460:CDS 35.0%
GTGCTGAAACAATATGTGTT+TGG - chr1_3:43498919-43498938 Msa0119460:five_prime_UTR 35.0%
ATGTGTTTGTCTGAATCCTT+GGG + chr1_3:43498955-43498974 None:intergenic 35.0%
CAAAACAAACAGGACTTACT+AGG - chr1_3:43498980-43498999 Msa0119460:intron 35.0%
ATGTACATTTCTTCCACCAT+TGG + chr1_3:43499174-43499193 None:intergenic 35.0%
! AATGGTGGAAGAAATGTACA+TGG - chr1_3:43499173-43499192 Msa0119460:intron 35.0%
AATGTACATGGAAGAGATGA+AGG - chr1_3:43499185-43499204 Msa0119460:intron 35.0%
ATGAAGGATCAAGAGATGAA+TGG - chr1_3:43499201-43499220 Msa0119460:intron 35.0%
TTCCAAACAAGACATTCCTA+TGG - chr1_3:43499332-43499351 Msa0119460:intron 35.0%
! AACCATAGGAATGTCTTGTT+TGG + chr1_3:43499337-43499356 None:intergenic 35.0%
TTTCTAACATTCACACCAAC+AGG + chr1_3:43499384-43499403 None:intergenic 35.0%
TCGGTGATTGAAGAATTTCA+TGG + chr1_3:43499473-43499492 None:intergenic 35.0%
TCATTGGACTTCACATGATT+CGG + chr1_3:43499492-43499511 None:intergenic 35.0%
GATGATAGACAAAGTAGAGA+TGG - chr1_3:43499552-43499571 Msa0119460:intron 35.0%
!!! TGGTTTTGGTCAATATCCAA+TGG - chr1_3:43499611-43499630 Msa0119460:intron 35.0%
! TTTTGGTCAATATCCAATGG+AGG - chr1_3:43499614-43499633 Msa0119460:intron 35.0%
CAATATCCAATGGAGGAAAT+CGG - chr1_3:43499621-43499640 Msa0119460:intron 35.0%
! TTCTTCCTAGTTGGATGTTT+TGG + chr1_3:43499767-43499786 None:intergenic 35.0%
ATTGGCGAAACAAATGAGTT+TGG - chr1_3:43499795-43499814 Msa0119460:intron 35.0%
AAAATCCGGTAACAATTGTG+CGG + chr1_3:43499874-43499893 None:intergenic 35.0%
! ACAATTGTTACCGGATTTTG+TGG - chr1_3:43499875-43499894 Msa0119460:intron 35.0%
GGGAAATAGATGATACAATC+GGG - chr1_3:43499916-43499935 Msa0119460:intron 35.0%
GGAAATAGATGATACAATCG+GGG - chr1_3:43499917-43499936 Msa0119460:intron 35.0%
GAAATAGATGATACAATCGG+GGG - chr1_3:43499918-43499937 Msa0119460:intron 35.0%
! AGAAGCGTACATTTACATGT+TGG + chr1_3:43500065-43500084 None:intergenic 35.0%
GAGAAACACAATCATTGCTA+TGG + chr1_3:43500109-43500128 None:intergenic 35.0%
! AACTCAAATGGTTCTATGCA+GGG + chr1_3:43500231-43500250 None:intergenic 35.0%
!!! AGTTTTGAAGATGGGATAGA+TGG - chr1_3:43500307-43500326 Msa0119460:five_prime_UTR 35.0%
!!! GTTTTGAAGATGGGATAGAT+GGG - chr1_3:43500308-43500327 Msa0119460:five_prime_UTR 35.0%
AAAGAGAAAGAGAGAGAGAG+GGG + chr1_3:43494573-43494592 None:intergenic 40.0%
CCCCCAAAAAAATAGATCCA+AGG - chr1_3:43494605-43494624 Msa0119460:three_prime_UTR 40.0%
!!! CCCCCTTGGATCTATTTTTT+TGG + chr1_3:43494611-43494630 None:intergenic 40.0%
!! TCTGGTTGGTGTGTTATTTG+TGG + chr1_3:43495709-43495728 None:intergenic 40.0%
! CAGCTGAGTTGAGAAAAACA+AGG + chr1_3:43496119-43496138 None:intergenic 40.0%
TGTTGGAGAATCTTCAACTG+CGG - chr1_3:43496581-43496600 Msa0119460:CDS 40.0%
!!! ATTGGTTTTTTTTGGTGGCC+GGG + chr1_3:43497577-43497596 None:intergenic 40.0%
!!! CATTGGTTTTTTTTGGTGGC+CGG + chr1_3:43497578-43497597 None:intergenic 40.0%
GTTGTGATCACTACTAGGAT+TGG + chr1_3:43497647-43497666 None:intergenic 40.0%
TGTGAGTTGTGATCACTACT+AGG + chr1_3:43497652-43497671 None:intergenic 40.0%
!!! GGATTGTTTTGGTTTGAAGG+TGG - chr1_3:43497963-43497982 Msa0119460:intron 40.0%
AGGAAATCACCATCTGCATT+TGG + chr1_3:43498014-43498033 None:intergenic 40.0%
TCCTCATTTGAACAAGTTGC+AGG - chr1_3:43498030-43498049 Msa0119460:intron 40.0%
! TCCTGCAACTTGTTCAAATG+AGG + chr1_3:43498034-43498053 None:intergenic 40.0%
AGAGCTGCGAATAAAAGCTT+AGG - chr1_3:43498144-43498163 Msa0119460:intron 40.0%
! AGCTTTGGTGGCAAAATTGA+AGG - chr1_3:43498177-43498196 Msa0119460:CDS 40.0%
! GCTTTGGTGGCAAAATTGAA+GGG - chr1_3:43498178-43498197 Msa0119460:CDS 40.0%
ACGGACCTTATACTATTCGA+AGG + chr1_3:43498456-43498475 None:intergenic 40.0%
! GTTTGGTTTCAGTTATCCCA+AGG - chr1_3:43498936-43498955 Msa0119460:intron 40.0%
CATGTGTTTGTCTGAATCCT+TGG + chr1_3:43498956-43498975 None:intergenic 40.0%
CACATGCTTGCAAAACAAAC+AGG - chr1_3:43498970-43498989 Msa0119460:intron 40.0%
AAAGAAGTAAGGAGGTTACC+TGG + chr1_3:43499008-43499027 None:intergenic 40.0%
TAAATGCTCGAGTTCGTCTT+TGG - chr1_3:43499145-43499164 Msa0119460:intron 40.0%
! AGTTCGTCTTTGGAAACCAA+TGG - chr1_3:43499155-43499174 Msa0119460:intron 40.0%
! TCAAGAGATGAATGGTTCTG+AGG - chr1_3:43499209-43499228 Msa0119460:intron 40.0%
!!! GGAGTTGGTGTTTTCATTGA+AGG + chr1_3:43499267-43499286 None:intergenic 40.0%
ACAAGAAAGAGTTCCAACCT+CGG - chr1_3:43499287-43499306 Msa0119460:intron 40.0%
! ACTTTTGGATTCTGTTTCCG+AGG + chr1_3:43499307-43499326 None:intergenic 40.0%
! GGTGTTGAAACTGAAACCAT+AGG + chr1_3:43499351-43499370 None:intergenic 40.0%
CAATTCAGGATTCAGCTTCA+CGG - chr1_3:43499404-43499423 Msa0119460:intron 40.0%
AATCTTCCGATTTCCTCCAT+TGG + chr1_3:43499630-43499649 None:intergenic 40.0%
! CAATTTGCACCAAGGTTTTC+AGG - chr1_3:43499660-43499679 Msa0119460:five_prime_UTR 40.0%
AATGGTGTTTCACTCACTCT+TGG - chr1_3:43499690-43499709 Msa0119460:intron 40.0%
! CCTGATAATGTGTCACAATG+AGG + chr1_3:43499720-43499739 None:intergenic 40.0%
CCTCATTGTGACACATTATC+AGG - chr1_3:43499717-43499736 Msa0119460:intron 40.0%
!!! CCTAGTTGGATGTTTTGGTT+TGG + chr1_3:43499762-43499781 None:intergenic 40.0%
CCAAACCAAAACATCCAACT+AGG - chr1_3:43499759-43499778 Msa0119460:intron 40.0%
CATCCAACTAGGAAGAAGAT+TGG - chr1_3:43499770-43499789 Msa0119460:intron 40.0%
TGTCCAATCTTCTTCCTAGT+TGG + chr1_3:43499776-43499795 None:intergenic 40.0%
CTAGGAAGAAGATTGGACAT+TGG - chr1_3:43499777-43499796 Msa0119460:intron 40.0%
TCAACATGCAGAATCCAAAG+AGG - chr1_3:43499844-43499863 Msa0119460:intron 40.0%
! GAACTCAAATGGTTCTATGC+AGG + chr1_3:43500232-43500251 None:intergenic 40.0%
AAGAGAAAGAGAGAGAGAGG+GGG + chr1_3:43494572-43494591 None:intergenic 45.0%
AGGTACTTCTCCCCCAAAAA+AGG - chr1_3:43494728-43494747 Msa0119460:three_prime_UTR 45.0%
CACACCAACCAGATTCACAA+AGG - chr1_3:43495716-43495735 Msa0119460:CDS 45.0%
!! GAAATCCAAGGTGGTTCTGA+CGG - chr1_3:43496012-43496031 Msa0119460:intron 45.0%
!! ATAGACTCTGGTGTTGTTGG+TGG + chr1_3:43496170-43496189 None:intergenic 45.0%
!! GAGATAGACTCTGGTGTTGT+TGG + chr1_3:43496173-43496192 None:intergenic 45.0%
TCGGCAGAACAATCAGTACA+TGG - chr1_3:43496225-43496244 Msa0119460:intron 45.0%
ATCAGTACATGGCCATCATG+AGG - chr1_3:43496236-43496255 Msa0119460:intron 45.0%
GCAAAGCAGAAACCTCATGA+TGG + chr1_3:43496251-43496270 None:intergenic 45.0%
CATGAGGTTTCTGCTTTGCA+TGG - chr1_3:43496252-43496271 Msa0119460:intron 45.0%
TCCTTAAGCCTTCATGCTCA+AGG - chr1_3:43496363-43496382 Msa0119460:intron 45.0%
CCTTAAGCCTTCATGCTCAA+GGG - chr1_3:43496364-43496383 Msa0119460:intron 45.0%
GAATCTTCAACTGCGGTTAG+TGG - chr1_3:43496588-43496607 Msa0119460:CDS 45.0%
!! TCTGTTGGTGGTGATGGAAA+TGG - chr1_3:43496621-43496640 Msa0119460:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_3:43497264-43497283 Msa0119460:intron 45.0%
ATTACCAATCCTGCAAGGTC+CGG - chr1_3:43497442-43497461 Msa0119460:intron 45.0%
!!! TTGGTTTTTTTTGGTGGCCG+GGG + chr1_3:43497576-43497595 None:intergenic 45.0%
! ATTCGCAGCTCTAATTTGGC+CGG + chr1_3:43498136-43498155 None:intergenic 45.0%
!! GGAGAAGATGATAGCTTTGG+TGG - chr1_3:43498165-43498184 Msa0119460:intron 45.0%
GTGGCAAAATTGAAGGGTCT+AGG - chr1_3:43498184-43498203 Msa0119460:CDS 45.0%
GAGGTCTCCAAGCATTATGA+TGG + chr1_3:43498269-43498288 None:intergenic 45.0%
AATGCTTGGAGACCTCAAAG+AGG - chr1_3:43498273-43498292 Msa0119460:CDS 45.0%
CTTTCAGGCAATCCTCTTTG+AGG + chr1_3:43498288-43498307 None:intergenic 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG - chr1_3:43498310-43498329 Msa0119460:CDS 45.0%
GTATAGCGAGTACTTACGGA+TGG + chr1_3:43498353-43498372 None:intergenic 45.0%
! TCGTCTTTGGAAACCAATGG+TGG - chr1_3:43499158-43499177 Msa0119460:intron 45.0%
GGAACTCTTTCTTGTGGAGT+TGG + chr1_3:43499282-43499301 None:intergenic 45.0%
GAGGTTGGAACTCTTTCTTG+TGG + chr1_3:43499288-43499307 None:intergenic 45.0%
TTGGATTCTGTTTCCGAGGT+TGG + chr1_3:43499303-43499322 None:intergenic 45.0%
ACACCATCAACTTCACCTGT+TGG - chr1_3:43499366-43499385 Msa0119460:intron 45.0%
ACACCAACAGGTGAAGTTGA+TGG + chr1_3:43499372-43499391 None:intergenic 45.0%
AAGCAAGTCCAAAGCGAACA+AGG - chr1_3:43499445-43499464 Msa0119460:intron 45.0%
TCATGGTTCCTTGTTCGCTT+TGG + chr1_3:43499456-43499475 None:intergenic 45.0%
GGAAATCGGAAGATTTGACG+CGG - chr1_3:43499635-43499654 Msa0119460:intron 45.0%
AATTGTGCGGCAAACCTCTT+TGG + chr1_3:43499861-43499880 None:intergenic 45.0%
GTTTGCCGCACAATTGTTAC+CGG - chr1_3:43499866-43499885 Msa0119460:intron 45.0%
GATGATACAATCGGGGGAAA+TGG - chr1_3:43499924-43499943 Msa0119460:five_prime_UTR 45.0%
ATGTACGCTTCTCTTACTGC+AGG - chr1_3:43500073-43500092 Msa0119460:intron 45.0%
TGTACGCTTCTCTTACTGCA+GGG - chr1_3:43500074-43500093 Msa0119460:intron 45.0%
TTCTCTTACTGCAGGGAATC+TGG - chr1_3:43500081-43500100 Msa0119460:intron 45.0%
!! AAAAAAAAAAAAACAATATT+AGG + chr1_3:43496795-43496814 None:intergenic 5.0%
ATAGATCCAAGGGGGTTGCT+TGG - chr1_3:43494616-43494635 Msa0119460:three_prime_UTR 50.0%
AAAACAAGGTTACCGGCGTG+TGG + chr1_3:43496105-43496124 None:intergenic 50.0%
ACTGATTGTTCTGCCGAGAG+CGG + chr1_3:43496222-43496241 None:intergenic 50.0%
CACATGTTGTACTGCATGCG+CGG + chr1_3:43496285-43496304 None:intergenic 50.0%
CCCTTGAGCATGAAGGCTTA+AGG + chr1_3:43496367-43496386 None:intergenic 50.0%
AAGCCTTCATGCTCAAGGGT+CGG - chr1_3:43496368-43496387 Msa0119460:intron 50.0%
TCGGGTTCATCTGCTTCGAA+CGG - chr1_3:43496420-43496439 Msa0119460:intron 50.0%
TGCTTCGAACGGCTGTGTTT+CGG - chr1_3:43496431-43496450 Msa0119460:intron 50.0%
TCAACTGCGGTTAGTGGAGA+AGG - chr1_3:43496594-43496613 Msa0119460:CDS 50.0%
! AGTGGAGAAGGTGGTTCTGT+TGG - chr1_3:43496606-43496625 Msa0119460:CDS 50.0%
TCACGAGGACAGTTGGTCAT+GGG + chr1_3:43497247-43497266 None:intergenic 50.0%
TTACCAATCCTGCAAGGTCC+GGG - chr1_3:43497443-43497462 Msa0119460:intron 50.0%
TTGTAGTGCTAGGGCAGTGT+AGG + chr1_3:43498073-43498092 None:intergenic 50.0%
AACAGGACTTACTAGGAGCC+AGG - chr1_3:43498987-43499006 Msa0119460:intron 50.0%
ACGCGGAACAATTTGCACCA+AGG - chr1_3:43499652-43499671 Msa0119460:five_prime_UTR 50.0%
TGCGAGATGCAATCATCGCA+AGG + chr1_3:43499953-43499972 None:intergenic 50.0%
ATGCAACCAAGCAACCCCCT+TGG + chr1_3:43494625-43494644 None:intergenic 55.0%
AACTCAGCTGCCAATCACCC+CGG - chr1_3:43496129-43496148 Msa0119460:intron 55.0%
!! CTGGTGTTGTTGGTGGTGGA+GGG + chr1_3:43496163-43496182 None:intergenic 55.0%
!! TCTGGTGTTGTTGGTGGTGG+AGG + chr1_3:43496164-43496183 None:intergenic 55.0%
!! GACTCTGGTGTTGTTGGTGG+TGG + chr1_3:43496167-43496186 None:intergenic 55.0%
CTGATTGTTCTGCCGAGAGC+GGG + chr1_3:43496221-43496240 None:intergenic 55.0%
TGTTGTACTGCATGCGCGGT+GGG + chr1_3:43496281-43496300 None:intergenic 55.0%
ATGTTGTACTGCATGCGCGG+TGG + chr1_3:43496282-43496301 None:intergenic 55.0%
CGCGCATGCAGTACAACATG+TGG - chr1_3:43496283-43496302 Msa0119460:intron 55.0%
CTTCACGCGCCGCTGAATTA+GGG + chr1_3:43496320-43496339 None:intergenic 55.0%
TGAAGCTACACGCGCTACTC+AGG - chr1_3:43496335-43496354 Msa0119460:intron 55.0%
GAAGCTACACGCGCTACTCA+GGG - chr1_3:43496336-43496355 Msa0119460:intron 55.0%
AGCCTTCATGCTCAAGGGTC+GGG - chr1_3:43496369-43496388 Msa0119460:intron 55.0%
GCTTCGAACGGCTGTGTTTC+GGG - chr1_3:43496432-43496451 Msa0119460:intron 55.0%
CTTCGAACGGCTGTGTTTCG+GGG - chr1_3:43496433-43496452 Msa0119460:intron 55.0%
ACTGCGGTTAGTGGAGAAGG+TGG - chr1_3:43496597-43496616 Msa0119460:CDS 55.0%
! GGAGAAGGTGGTTCTGTTGG+TGG - chr1_3:43496609-43496628 Msa0119460:CDS 55.0%
!! GGTGGTTCTGTTGGTGGTGA+TGG - chr1_3:43496615-43496634 Msa0119460:CDS 55.0%
CTCACGAGGACAGTTGGTCA+TGG + chr1_3:43497248-43497267 None:intergenic 55.0%
GCTAAGCTCACGAGGACAGT+TGG + chr1_3:43497254-43497273 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_3:43497262-43497281 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_3:43497259-43497278 Msa0119460:intron 55.0%
TACCAATCCTGCAAGGTCCG+AGG - chr1_3:43497444-43497463 Msa0119460:intron 55.0%
AACCTCGGACCTTGCAGGAT+TGG + chr1_3:43497449-43497468 None:intergenic 55.0%
GTTTGAACCTCGGACCTTGC+AGG + chr1_3:43497454-43497473 None:intergenic 55.0%
TACCAATCCTGCAAGGTCCG+GGG - chr1_3:43497444-43497463 Msa0119460:intron 55.0%
GAAGGCCGTCAGAACCACCT+TGG + chr1_3:43496020-43496039 None:intergenic 60.0%
ACAAGGTTACCGGCGTGTGG+CGG + chr1_3:43496102-43496121 None:intergenic 60.0%
!! GGAAGTGTTGCCGGGGTGAT+TGG + chr1_3:43496142-43496161 None:intergenic 60.0%
!! TGGTGGAGGGAAGTGTTGCC+GGG + chr1_3:43496150-43496169 None:intergenic 60.0%
!! GTGGTGGAGGGAAGTGTTGC+CGG + chr1_3:43496151-43496170 None:intergenic 60.0%
GTGGCGCGTGAGATAGACTC+TGG + chr1_3:43496182-43496201 None:intergenic 60.0%
TCACGCGCCACCACAGTTTG+TGG - chr1_3:43496191-43496210 Msa0119460:intron 60.0%
CACGCGCCACCACAGTTTGT+GGG - chr1_3:43496192-43496211 Msa0119460:intron 60.0%
ACGCGCCACCACAGTTTGTG+GGG - chr1_3:43496193-43496212 Msa0119460:intron 60.0%
ACGCGCCGCTGAATTAGGGT+CGG + chr1_3:43496316-43496335 None:intergenic 60.0%
GCTTCACGCGCCGCTGAATT+AGG + chr1_3:43496321-43496340 None:intergenic 60.0%
GATGAACCCGACCCACCAAC+CGG + chr1_3:43496411-43496430 None:intergenic 60.0%
GAACCCCTGCCACCACAATC+CGG - chr1_3:43497326-43497345 Msa0119460:intron 60.0%
AACCCCTGCCACCACAATCC+GGG - chr1_3:43497327-43497346 Msa0119460:intron 60.0%
AACCCCGGATTGTGGTGGCA+GGG + chr1_3:43497333-43497352 None:intergenic 60.0%
GTTCGAACCCCGGATTGTGG+TGG + chr1_3:43497338-43497357 None:intergenic 60.0%
GGTGGCTGGGGTTTGAACCT+CGG + chr1_3:43497464-43497483 None:intergenic 60.0%
AACCCCGGACCTTGCAGGAT+TGG + chr1_3:43497549-43497568 None:intergenic 60.0%
!! GGTGGAGGGAAGTGTTGCCG+GGG + chr1_3:43496149-43496168 None:intergenic 65.0%
CGCGCCACCACAGTTTGTGG+GGG - chr1_3:43496194-43496213 Msa0119460:intron 65.0%
GGGACCCCCACAAACTGTGG+TGG + chr1_3:43496201-43496220 None:intergenic 65.0%
AGCGGGACCCCCACAAACTG+TGG + chr1_3:43496204-43496223 None:intergenic 65.0%
GTTTGTGGGGGTCCCGCTCT+CGG - chr1_3:43496206-43496225 Msa0119460:intron 65.0%
CCGCTGAATTAGGGTCGGCG+GGG + chr1_3:43496311-43496330 None:intergenic 65.0%
CCCCGCCGACCCTAATTCAG+CGG - chr1_3:43496308-43496327 Msa0119460:intron 65.0%
GCCGCTGAATTAGGGTCGGC+GGG + chr1_3:43496312-43496331 None:intergenic 65.0%
CGCCGCTGAATTAGGGTCGG+CGG + chr1_3:43496313-43496332 None:intergenic 65.0%
CGCCCGACCCTTGAGCATGA+AGG + chr1_3:43496374-43496393 None:intergenic 65.0%
TCATGCTCAAGGGTCGGGCG+AGG - chr1_3:43496374-43496393 Msa0119460:intron 65.0%
!! ACGCGCGTGTACCGGTTGGT+GGG - chr1_3:43496397-43496416 Msa0119460:intron 65.0%
!! GCGTGTACCGGTTGGTGGGT+CGG - chr1_3:43496401-43496420 Msa0119460:intron 65.0%
!! CGTGTACCGGTTGGTGGGTC+GGG - chr1_3:43496402-43496421 Msa0119460:intron 65.0%
ACCCCTGCCACCACAATCCG+GGG - chr1_3:43497328-43497347 Msa0119460:intron 65.0%
ACCCCGGATTGTGGTGGCAG+GGG + chr1_3:43497332-43497351 None:intergenic 65.0%
GAACCCCGGATTGTGGTGGC+AGG + chr1_3:43497334-43497353 None:intergenic 65.0%
GGGGTTCGAACCCCGGATTG+TGG + chr1_3:43497341-43497360 None:intergenic 65.0%
GATGGTCGGGGTTCGAACCC+CGG + chr1_3:43497348-43497367 None:intergenic 65.0%
GTTCGAACCCCGGACCTTGC+AGG + chr1_3:43497310-43497329 None:intergenic 65.0%
AAGGTCCGGGGTTCGAACCC+CGG - chr1_3:43497312-43497331 Msa0119460:intron 65.0%
AGGTTACCGGCGTGTGGCGG+CGG + chr1_3:43496099-43496118 None:intergenic 70.0%
! GAGGACGCGCGTGTACCGGT+TGG - chr1_3:43496393-43496412 Msa0119460:intron 70.0%
!! GACGCGCGTGTACCGGTTGG+TGG - chr1_3:43496396-43496415 Msa0119460:intron 70.0%
GGTGGCAGGGGTTCGAACCC+CGG + chr1_3:43497320-43497339 None:intergenic 70.0%
GGGCGAGGACGCGCGTGTAC+CGG - chr1_3:43496389-43496408 Msa0119460:intron 75.0%
GGTGGCCGGGGTTCGAACCC+CGG + chr1_3:43497564-43497583 None:intergenic 75.0%
! TGGCGGCGGCTGCGGCGCGT+CGG + chr1_3:43496085-43496104 None:intergenic 85.0%
! CCGGCGTGTGGCGGCGGCTG+CGG + chr1_3:43496093-43496112 None:intergenic 85.0%
! CCGCAGCCGCCGCCACACGC+CGG - chr1_3:43496090-43496109 Msa0119460:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 43494436 43500466 43494436 ID=Msa0119460;Name=Msa0119460
chr1_3 mRNA 43494436 43500466 43494436 ID=Msa0119460-mRNA-1;Parent=Msa0119460;Name=Msa0119460-mRNA-1;_AED=0.06;_eAED=0.06;_QI=427|1|1|1|0.42|0.37|8|544|649
chr1_3 exon 43494436 43494852 43494436 ID=Msa0119460-mRNA-1:exon:13071;Parent=Msa0119460-mRNA-1
chr1_3 exon 43494873 43495773 43494873 ID=Msa0119460-mRNA-1:exon:13070;Parent=Msa0119460-mRNA-1
chr1_3 exon 43495894 43495954 43495894 ID=Msa0119460-mRNA-1:exon:13069;Parent=Msa0119460-mRNA-1
chr1_3 exon 43496547 43496920 43496547 ID=Msa0119460-mRNA-1:exon:13068;Parent=Msa0119460-mRNA-1
chr1_3 exon 43498177 43498941 43498177 ID=Msa0119460-mRNA-1:exon:13067;Parent=Msa0119460-mRNA-1
chr1_3 exon 43499646 43499697 43499646 ID=Msa0119460-mRNA-1:exon:13066;Parent=Msa0119460-mRNA-1
chr1_3 exon 43499922 43499978 43499922 ID=Msa0119460-mRNA-1:exon:13065;Parent=Msa0119460-mRNA-1
chr1_3 exon 43500173 43500466 43500173 ID=Msa0119460-mRNA-1:exon:13064;Parent=Msa0119460-mRNA-1
chr1_3 five_prime_UTR 43500173 43500466 43500173 ID=Msa0119460-mRNA-1:five_prime_utr;Parent=Msa0119460-mRNA-1
chr1_3 five_prime_UTR 43499922 43499978 43499922 ID=Msa0119460-mRNA-1:five_prime_utr;Parent=Msa0119460-mRNA-1
chr1_3 five_prime_UTR 43499646 43499697 43499646 ID=Msa0119460-mRNA-1:five_prime_utr;Parent=Msa0119460-mRNA-1
chr1_3 five_prime_UTR 43498918 43498941 43498918 ID=Msa0119460-mRNA-1:five_prime_utr;Parent=Msa0119460-mRNA-1
chr1_3 CDS 43498177 43498917 43498177 ID=Msa0119460-mRNA-1:cds;Parent=Msa0119460-mRNA-1
chr1_3 CDS 43496547 43496920 43496547 ID=Msa0119460-mRNA-1:cds;Parent=Msa0119460-mRNA-1
chr1_3 CDS 43495894 43495954 43495894 ID=Msa0119460-mRNA-1:cds;Parent=Msa0119460-mRNA-1
chr1_3 CDS 43495000 43495773 43495000 ID=Msa0119460-mRNA-1:cds;Parent=Msa0119460-mRNA-1
chr1_3 three_prime_UTR 43494873 43494999 43494873 ID=Msa0119460-mRNA-1:three_prime_utr;Parent=Msa0119460-mRNA-1
chr1_3 three_prime_UTR 43494436 43494852 43494436 ID=Msa0119460-mRNA-1:three_prime_utr;Parent=Msa0119460-mRNA-1
Gene Sequence

>Msa0119460

ATGGCAACGTATTTTCATAATAATTCAGAAATCCAAGGTGGTTCTGACGGCCTTCAAACACTCATTTTCATGAATCCATCAGGTTACATCAATTACTCCGACGCGCCGCAGCCGCCGCCACACGCCGGTAACCTTGTTTTTCTCAACTCAGCTGCCAATCACCCCGGCAACACTTCCCTCCACCACCAACAACACCAGAGTCTATCTCACGCGCCACCACAGTTTGTGGGGGTCCCGCTCTCGGCAGAACAATCAGTACATGGCCATCATGAGGTTTCTGCTTTGCATGGCTTCCCACCGCGCATGCAGTACAACATGTGGAACCCCGCCGACCCTAATTCAGCGGCGCGTGAAGCTACACGCGCTACTCAGGGATTGTCCTTAAGCCTTCATGCTCAAGGGTCGGGCGAGGACGCGCGTGTACCGGTTGGTGGGTCGGGTTCATCTGCTTCGAACGGCTGTGTTTCGGGGATACAAAGTGTGTTATTGAGTTCTAAGTATTTGAAAGCTACACAAGAATTACTTGATGAAGTTGTTAATGTTAATGGTGGGATTAAGGTTGAAAATGTTAAGAAGAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCGGTTAGTGGAGAAGGTGGTTCTGTTGGTGGTGATGGAAATGGAAAACGTAGCACTGAGTTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAAGCTAAGTTAATTAACATGCTTGATGAGGTGGAACAACGATACAGACAATATCACAACCAAATGCAGATGGTGATTTCCTCATTTGAACAAGTTGCAGGAATTGGTTCAGCAAGAACCTACACTGCCCTAGCACTACAAACAATCTCTAAGCAATTTCGATGTTTAAAAGATGCAATTACCGGCCAAATTAGAGCTGCGAATAAAAGCTTAGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCTAGGCTCAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTGGGAATGATCCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACATTTTCTCCATCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGTCTTTGGAAACCAATGGTGGAAGAAATGTACATGGAAGAGATGAAGGATCAAGAGATGAATGGTTCTGAGGACAACAAATCAAGCAAAAATACCGATGAAGATCCTTCAATGAAAACACCAACTCCACAAGAAAGAGTTCCAACCTCGGAAACAGAATCCAAAAGTTTCAATTCCAAACAAGACATTCCTATGGTTTCAGTTTCAACACCATCAACTTCACCTGTTGGTGTGAATGTTAGAAACAATTCAGGATTCAGCTTCACGGAACTTGATGGAATAACACAAGCAAGTCCAAAGCGAACAAGGAACCATGAAATTCTTCAATCACCGAATCATGTGAAGTCCAATGAAACAACAACTAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAACCAAACTAATTTCATTGCTGGTTTTGGTCAATATCCAATGGAGGAAATCGGAAGATTTGACGCGGAACAATTTGCACCAAGGTTTTCAGGTAATAATAATGGTGTTTCACTCACTCTTGGTTTGCCTCATTGTGACACATTATCAGGAACACATCAAAGTTTTATGCCAAACCAAAACATCCAACTAGGAAGAAGATTGGACATTGGCGAAACAAATGAGTTTGGTGACTCTTCAGCTGCATTTGAGAGTATCAACATGCAGAATCCAAAGAGGTTTGCCGCACAATTGTTACCGGATTTTGTGGCATAA
Protein sequence

>Msa0119460

MATYFHNNSEIQGGSDGLQTLIFMNPSGYINYSDAPQPPPHAGNLVFLNSAANHPGNTSLHHQQHQSLSHAPPQFVGVPLSAEQSVHGHHEVSALHGFPPRMQYNMWNPADPNSAAREATRATQGLSLSLHAQGSGEDARVPVGGSGSSASNGCVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVENVKKSFEKNKVVGESSTAVSGEGGSVGGDGNGKRSTELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDQEMNGSEDNKSSKNTDEDPSMKTPTPQERVPTSETESKSFNSKQDIPMVSVSTPSTSPVGVNVRNNSGFSFTELDGITQASPKRTRNHEILQSPNHVKSNETTTNNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFAPRFSGNNNGVSLTLGLPHCDTLSGTHQSFMPNQNIQLGRRLDIGETNEFGDSSAAFESINMQNPKRFAAQLLPDFVA*