Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119640 | sp|F4KCE9|KNL2_ARATH | 37.931 | 116 | 59 | 4 | 76 | 179 | 11 | 125 | 1.55e-13 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119640 | A0A072VLC9 | 78.926 | 503 | 63 | 6 | 54 | 520 | 1 | 496 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0119640 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119640 | MtrunA17_Chr1g0182621 | 78.926 | 503 | 63 | 6 | 54 | 520 | 1 | 496 | 0.0 | 741 |
| Msa0119640 | MtrunA17_Chr1g0182611 | 49.136 | 405 | 156 | 8 | 54 | 413 | 1 | 400 | 3.75e-107 | 328 |
| Msa0119640 | MtrunA17_Chr1g0182611 | 57.414 | 263 | 85 | 2 | 285 | 520 | 131 | 393 | 7.62e-82 | 263 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119640 | AT5G02520.2 | 37.931 | 116 | 59 | 4 | 76 | 179 | 11 | 125 | 1.49e-14 | 77.0 |
| Msa0119640 | AT5G02520.1 | 37.931 | 116 | 59 | 4 | 76 | 179 | 11 | 125 | 1.57e-14 | 77.0 |
| Msa0119640 | AT5G02520.3 | 37.931 | 116 | 59 | 4 | 76 | 179 | 11 | 125 | 2.09e-14 | 76.3 |
Find 157 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCATCAAATGATATTTC+TGG | 0.210331 | 1_3:+43773413 | None:intergenic |
| TTCTACCTCGCTTAGAGTTT+TGG | 0.216024 | 1_3:-43772048 | Msa0119640:three_prime_UTR |
| CAGACGCAGGCTGCTTCTTC+TGG | 0.244492 | 1_3:+43773098 | None:intergenic |
| TCTTTATCTGGATGTGTTGC+AGG | 0.273995 | 1_3:+43772625 | None:intergenic |
| TGATTCGGGCAATGCTGTTT+TGG | 0.283336 | 1_3:-43773901 | Msa0119640:CDS |
| TATTTGGCTTTCCTGAAAAC+TGG | 0.288842 | 1_3:-43773971 | Msa0119640:CDS |
| TCAAACACCTATTTATAATA+TGG | 0.307116 | 1_3:-43772020 | Msa0119640:intron |
| AGATTTGTTGATACATTATC+AGG | 0.314230 | 1_3:+43772995 | None:intergenic |
| TCACATACCATATTATAAAT+AGG | 0.322514 | 1_3:+43772013 | None:intergenic |
| GAACGGTTACATTATACTAT+TGG | 0.334226 | 1_3:-43774442 | Msa0119640:CDS |
| CCGTGAGATTACAGAAATTC+AGG | 0.340294 | 1_3:-43771816 | Msa0119640:three_prime_UTR |
| GATATTTCTGGAAGACTTGC+TGG | 0.351730 | 1_3:+43773425 | None:intergenic |
| CTAAACAGTGGTTGTTTCCT+TGG | 0.353316 | 1_3:+43774402 | None:intergenic |
| GAGAATAATTCAAGTTAGTT+GGG | 0.353501 | 1_3:+43771632 | None:intergenic |
| ATTCGTATGGGTTTCGACTT+TGG | 0.355577 | 1_3:+43774891 | None:intergenic |
| GTAGAGCTCTGCTCTTTCTC+TGG | 0.362481 | 1_3:+43773058 | None:intergenic |
| TGAGAATAATTCAAGTTAGT+TGG | 0.362684 | 1_3:+43771631 | None:intergenic |
| CAATTCTCTAGGGCCTCTTC+AGG | 0.370219 | 1_3:+43773689 | None:intergenic |
| GCAGAGATCTGGTCTTTATC+TGG | 0.370773 | 1_3:+43772613 | None:intergenic |
| CTTCCAGAAATATCATTTGA+TGG | 0.374155 | 1_3:-43773416 | Msa0119640:intron |
| CAGTAGCAGGTTGCTTCCTC+TGG | 0.377946 | 1_3:+43772653 | None:intergenic |
| GGAAGAGTGAACACAATGTC+TGG | 0.382786 | 1_3:-43772523 | Msa0119640:CDS |
| GTAGAGCTCGGCTCTCCATC+TGG | 0.403978 | 1_3:+43773500 | None:intergenic |
| TAAACAGTGGTTGTTTCCTT+GGG | 0.406143 | 1_3:+43774403 | None:intergenic |
| CAGAAGAAGCAGCCTGCGTC+TGG | 0.410230 | 1_3:-43773097 | Msa0119640:CDS |
| TGATTCGGACACTGTTGTTC+CGG | 0.410442 | 1_3:-43773456 | Msa0119640:CDS |
| TATGACGAAGAGCCTCTAAA+AGG | 0.413831 | 1_3:+43771773 | None:intergenic |
| CGATCTCTCGTGGTCTTATC+CGG | 0.415374 | 1_3:+43772793 | None:intergenic |
| TGTGGTGGTGGCGCAGCTGC+CGG | 0.417426 | 1_3:+43774856 | None:intergenic |
| GTTGATGTTGCTTGTGGTAG+TGG | 0.418847 | 1_3:-43773617 | Msa0119640:CDS |
| TTGAGAGAAGAGAACATAGT+TGG | 0.421570 | 1_3:+43774917 | None:intergenic |
| ATTCAGGGAAGAAGCGGTTC+GGG | 0.422473 | 1_3:-43774268 | Msa0119640:intron |
| AGACTTGCTGGTACATTATC+CGG | 0.428747 | 1_3:+43773437 | None:intergenic |
| ATGATCTTCCACAACCTTCA+AGG | 0.433807 | 1_3:+43773036 | None:intergenic |
| GATCTCTGCCTTAGCAGCCT+TGG | 0.438669 | 1_3:-43772599 | Msa0119640:CDS |
| AGGGTATAACATTATGCATC+CGG | 0.438930 | 1_3:+43772677 | None:intergenic |
| TCCTACTTCTTTGGTATCAC+CGG | 0.443039 | 1_3:-43772812 | Msa0119640:CDS |
| GGTTGTGGAAGATCATGATT+TGG | 0.444376 | 1_3:-43773029 | Msa0119640:CDS |
| CAGAGGAAGCAACCTGCTAC+TGG | 0.444849 | 1_3:-43772652 | Msa0119640:CDS |
| GTTGGGGCAGAGATAATTAC+GGG | 0.448071 | 1_3:+43771649 | None:intergenic |
| GGCACTTCTTGAAGATGAAC+GGG | 0.448402 | 1_3:-43772764 | Msa0119640:CDS |
| AAAATAGTTGGGTTATCGTT+GGG | 0.448632 | 1_3:+43774994 | None:intergenic |
| GGAGTGAAGTCAGCCATGTT+TGG | 0.454396 | 1_3:+43774533 | None:intergenic |
| GATTCAGGGAAGAAGCGGTT+CGG | 0.454911 | 1_3:-43774269 | Msa0119640:intron |
| GAAAATAGTTGGGTTATCGT+TGG | 0.458276 | 1_3:+43774993 | None:intergenic |
| AGTTGGGGCAGAGATAATTA+CGG | 0.461487 | 1_3:+43771648 | None:intergenic |
| GGCCATGGAAAATCATGATT+CGG | 0.462249 | 1_3:-43773471 | Msa0119640:CDS |
| CTGTAAAATCTCCTCGAGGC+AGG | 0.462276 | 1_3:-43772364 | Msa0119640:three_prime_UTR |
| TAAGACTTTACATTCATCTC+CGG | 0.463168 | 1_3:+43773652 | None:intergenic |
| TGTAGGGTCAATATTGTTCA+TGG | 0.465459 | 1_3:-43772724 | Msa0119640:CDS |
| GTCAATGATGTTCATGGTAG+TGG | 0.469318 | 1_3:-43773163 | Msa0119640:CDS |
| AGTCCTTAGCATTATGCAAC+CGG | 0.471012 | 1_3:+43773122 | None:intergenic |
| GCAGATGGTGCGGATTCGTA+TGG | 0.472057 | 1_3:+43774878 | None:intergenic |
| TACGAATCCGCACCATCTGC+CGG | 0.478465 | 1_3:-43774875 | Msa0119640:CDS |
| ATGGAGTCTTGCAATTCTCT+AGG | 0.479998 | 1_3:+43773678 | None:intergenic |
| TCTCCATCTGGATGCTTGAA+AGG | 0.480546 | 1_3:+43773512 | None:intergenic |
| AGTAAGGTCAATGATGTTCA+TGG | 0.481620 | 1_3:-43773169 | Msa0119640:CDS |
| GTAAAGTCTTAAAGATGAGT+AGG | 0.481739 | 1_3:-43773640 | Msa0119640:CDS |
| GAGCTCTACCTTGAAGGTTG+TGG | 0.482477 | 1_3:-43773044 | Msa0119640:CDS |
| TTACATTCATCTCCGGGGAA+TGG | 0.483495 | 1_3:+43773659 | None:intergenic |
| AGTCTCAAAATATTCAGATC+TGG | 0.485810 | 1_3:-43772278 | Msa0119640:intron |
| GTGGCGCAGCTGCCGGCAGA+TGG | 0.493346 | 1_3:+43774863 | None:intergenic |
| TCTTTCTCTGGATTCTTGAG+AGG | 0.504491 | 1_3:+43773070 | None:intergenic |
| TTTAGAGGCTCTTCGTCATA+GGG | 0.504581 | 1_3:-43771770 | Msa0119640:three_prime_UTR |
| TATGTCAATTAAGATGAGTA+AGG | 0.506587 | 1_3:-43773185 | Msa0119640:CDS |
| AGAGCAGAGCTCTACCTTGA+AGG | 0.508453 | 1_3:-43773050 | Msa0119640:CDS |
| AAGACTTTACATTCATCTCC+GGG | 0.513597 | 1_3:+43773653 | None:intergenic |
| ATTTGGCTTTCCTGAAAACT+GGG | 0.514503 | 1_3:-43773970 | Msa0119640:CDS |
| CGGTTACATTATACTATTGG+TGG | 0.515241 | 1_3:-43774439 | Msa0119640:CDS |
| AGACCGATGGAGTGTGGTGG+TGG | 0.516213 | 1_3:+43774844 | None:intergenic |
| ACTCAATTCCAAGGCTGCTA+AGG | 0.517166 | 1_3:+43772591 | None:intergenic |
| TTACTTTGTGGAAGAGATGC+CGG | 0.520785 | 1_3:+43774373 | None:intergenic |
| TAAAGTCTTAAAGATGAGTA+GGG | 0.521632 | 1_3:-43773639 | Msa0119640:CDS |
| AGGCTGCTAAGGCAGAGATC+TGG | 0.526441 | 1_3:+43772602 | None:intergenic |
| ACCGGCCACTACGTCTAGTC+CGG | 0.527410 | 1_3:+43773140 | None:intergenic |
| AATGGCGGATAGAGAAATAG+AGG | 0.528768 | 1_3:+43774821 | None:intergenic |
| AACCACTGTTTAGCCATCTC+CGG | 0.530631 | 1_3:-43774392 | Msa0119640:CDS |
| TTCATCTTGCTTCCAACGAA+CGG | 0.532011 | 1_3:-43774459 | Msa0119640:CDS |
| GCAGGTTGCTTCCTCTGGTA+GGG | 0.532042 | 1_3:+43772658 | None:intergenic |
| AGTATAATGTAACCGTTCGT+TGG | 0.532635 | 1_3:+43774447 | None:intergenic |
| AGCAGGTTGCTTCCTCTGGT+AGG | 0.534074 | 1_3:+43772657 | None:intergenic |
| TGAGAGAAGAGAACATAGTT+GGG | 0.534272 | 1_3:+43774918 | None:intergenic |
| GCAGCTGCCGGCAGATGGTG+CGG | 0.537213 | 1_3:+43774868 | None:intergenic |
| GAGCTCTACTTCAAAGGCCA+TGG | 0.540083 | 1_3:-43773486 | Msa0119640:CDS |
| TCAGGAAATACCGACGAAGT+AGG | 0.541822 | 1_3:+43773707 | None:intergenic |
| GAGGCTCTTCGTCATAGGGC+AGG | 0.543121 | 1_3:-43771766 | Msa0119640:three_prime_UTR |
| GACTTTAATATTATGCAACC+TGG | 0.548218 | 1_3:+43773577 | None:intergenic |
| ATGGCCTTTGAAGTAGAGCT+CGG | 0.551924 | 1_3:+43773488 | None:intergenic |
| GGATTTAAGTCACTCGAACA+AGG | 0.552444 | 1_3:-43772342 | Msa0119640:three_prime_UTR |
| TCTAAAGCAAGCTAGAACAG+AGG | 0.552946 | 1_3:+43773944 | None:intergenic |
| CAGATGGTGCGGATTCGTAT+GGG | 0.553016 | 1_3:+43774879 | None:intergenic |
| CCTGAATTTCTGTAATCTCA+CGG | 0.553835 | 1_3:+43771816 | None:intergenic |
| TGTGGAAGAGATGCCGGAGA+TGG | 0.553990 | 1_3:+43774379 | None:intergenic |
| AGTGAACACAATGTCTGGGC+AGG | 0.558749 | 1_3:-43772518 | Msa0119640:CDS |
| GTTGCAGGATCTCCAGTAGC+AGG | 0.559749 | 1_3:+43772640 | None:intergenic |
| TGCCTTGTTGCGATCTCTCG+TGG | 0.562225 | 1_3:+43772783 | None:intergenic |
| TGTAAAATCTCCTCGAGGCA+GGG | 0.563211 | 1_3:-43772363 | Msa0119640:three_prime_UTR |
| ACATGTCAATTAAGACGTGT+AGG | 0.567831 | 1_3:-43772741 | Msa0119640:CDS |
| TCCTCCATCACTCAATTCCA+AGG | 0.568898 | 1_3:+43772582 | None:intergenic |
| CTTCTAGAAATATTATCTGA+AGG | 0.573145 | 1_3:-43772974 | Msa0119640:intron |
| TTCGTCGGTATTTCCTGAAG+AGG | 0.573272 | 1_3:-43773702 | Msa0119640:CDS |
| AGAGAGATAAGTGAGATGAG+AGG | 0.573344 | 1_3:+43774560 | None:intergenic |
| TCCGGTGATACCAAAGAAGT+AGG | 0.573504 | 1_3:+43772811 | None:intergenic |
| TGGAGTCTTGCAATTCTCTA+GGG | 0.573608 | 1_3:+43773679 | None:intergenic |
| AATTGCAAGACTCCATTCCC+CGG | 0.573734 | 1_3:-43773671 | Msa0119640:CDS |
| ATGATGTTCATGGTAGTGGC+CGG | 0.574449 | 1_3:-43773159 | Msa0119640:CDS |
| ATATTGTTCATGGTAGTAGC+GGG | 0.576380 | 1_3:-43772714 | Msa0119640:CDS |
| AGTAGGGTTGATGTTGCTTG+TGG | 0.577027 | 1_3:-43773623 | Msa0119640:CDS |
| GCGCCACCACCACACTCCAT+CGG | 0.578661 | 1_3:-43774847 | Msa0119640:CDS |
| AGGCACTTCTTGAAGATGAA+CGG | 0.580313 | 1_3:-43772765 | Msa0119640:CDS |
| TGGCCGGTTGCATAATGCTA+AGG | 0.580438 | 1_3:-43773125 | Msa0119640:CDS |
| AGAATAATTCAAGTTAGTTG+GGG | 0.581581 | 1_3:+43771633 | None:intergenic |
| AGAGAAATAGAGGAGACCGA+TGG | 0.581695 | 1_3:+43774831 | None:intergenic |
| AAATACCGACGAAGTAGGAA+TGG | 0.585417 | 1_3:+43773712 | None:intergenic |
| GGAATTGAGTGATGGAGGAC+TGG | 0.585638 | 1_3:-43772578 | Msa0119640:CDS |
| GCGGGAATAGACGTAGTGCC+CGG | 0.588199 | 1_3:-43772696 | Msa0119640:CDS |
| GGTCCTTTCAAGCATCCAGA+TGG | 0.591432 | 1_3:-43773515 | Msa0119640:CDS |
| ATTAGATAAACAACGCACGC+TGG | 0.593171 | 1_3:-43774170 | Msa0119640:intron |
| GAAGAGTGAACACAATGTCT+GGG | 0.597638 | 1_3:-43772522 | Msa0119640:CDS |
| GCAGCCTTGGAATTGAGTGA+TGG | 0.604319 | 1_3:-43772586 | Msa0119640:CDS |
| AGAAGAAGAAGAAGTTGTAG+GGG | 0.606103 | 1_3:+43774493 | None:intergenic |
| GTTTCCCTTGAGACTGTCGA+TGG | 0.607459 | 1_3:-43774207 | Msa0119640:intron |
| GATTTAAGTCACTCGAACAA+GGG | 0.607943 | 1_3:-43772341 | Msa0119640:three_prime_UTR |
| GCCTTGGAATTGAGTGATGG+AGG | 0.608447 | 1_3:-43772583 | Msa0119640:CDS |
| CATGTCAATTAAGACGTGTA+GGG | 0.610651 | 1_3:-43772740 | Msa0119640:CDS |
| GGGTATAACATTATGCATCC+GGG | 0.611212 | 1_3:+43772678 | None:intergenic |
| TATCTCTCTTCAACCAAACA+TGG | 0.611266 | 1_3:-43774546 | Msa0119640:CDS |
| ATATACCATCGACAGTCTCA+AGG | 0.611734 | 1_3:+43774202 | None:intergenic |
| AAAGTCCATTCCTACTTCGT+CGG | 0.613142 | 1_3:-43773717 | Msa0119640:CDS |
| TTGAGAGGATCTCCAGACGC+AGG | 0.618701 | 1_3:+43773085 | None:intergenic |
| GTTGTGATTCAGGGAAGAAG+CGG | 0.620242 | 1_3:-43774274 | Msa0119640:intron |
| TATTATCAAAAGATATGATG+AGG | 0.626070 | 1_3:-43774229 | Msa0119640:CDS |
| AGAGCCGAGCTCTACTTCAA+AGG | 0.627631 | 1_3:-43773492 | Msa0119640:CDS |
| GGGGTGCAATTAGAAGAAGT+AGG | 0.628823 | 1_3:+43774512 | None:intergenic |
| AAGCAGCATCCTGAGTGTAG+AGG | 0.635067 | 1_3:-43773536 | Msa0119640:CDS |
| TAGAGGAGACCGATGGAGTG+TGG | 0.635161 | 1_3:+43774838 | None:intergenic |
| TATACCATCGACAGTCTCAA+GGG | 0.636705 | 1_3:+43774203 | None:intergenic |
| AATATTGTTCATGGTAGTAG+CGG | 0.636935 | 1_3:-43772715 | Msa0119640:CDS |
| CAATGACTCTGGAGAAACTG+TGG | 0.637102 | 1_3:+43772301 | None:intergenic |
| GCCGGACTAGACGTAGTGGC+CGG | 0.638720 | 1_3:-43773141 | Msa0119640:CDS |
| AGAGATAATTACACAAAACA+AGG | 0.647978 | 1_3:+43771673 | None:intergenic |
| GGCGATGGTTGAAACAGAAG+CGG | 0.648573 | 1_3:-43772423 | Msa0119640:CDS |
| GAGATTACAGAAATTCAGGA+AGG | 0.670364 | 1_3:-43771812 | Msa0119640:three_prime_UTR |
| TTGAAAGGACCTCTACACTC+AGG | 0.674727 | 1_3:+43773527 | None:intergenic |
| TGGCTCGTTAAATCATCCCA+AGG | 0.675240 | 1_3:-43774419 | Msa0119640:CDS |
| ACTGGAAAGTCTATCGACAC+CGG | 0.699764 | 1_3:-43772560 | Msa0119640:CDS |
| TGCCGGAGATGGCTAAACAG+TGG | 0.700088 | 1_3:+43774390 | None:intergenic |
| AGACTTTACATTCATCTCCG+GGG | 0.702502 | 1_3:+43773654 | None:intergenic |
| TTGCGCCAAAACTCTAAGCG+AGG | 0.703796 | 1_3:+43772043 | None:intergenic |
| TGACTTAAATCCCTGCCTCG+AGG | 0.703921 | 1_3:+43772353 | None:intergenic |
| AAAGGGGTTCTATACAATGG+CGG | 0.709873 | 1_3:+43774806 | None:intergenic |
| AGTGGCCGGACTAGACGTAG+TGG | 0.713698 | 1_3:-43773145 | Msa0119640:CDS |
| GACCACGAGAGATCGCAACA+AGG | 0.726617 | 1_3:-43772785 | Msa0119640:CDS |
| ATAATGTTATACCCTACCAG+AGG | 0.755761 | 1_3:-43772669 | Msa0119640:CDS |
| AGGAGACCGATGGAGTGTGG+TGG | 0.759437 | 1_3:+43774841 | None:intergenic |
| TCTTCTGTAAAATCTCCTCG+AGG | 0.762392 | 1_3:-43772368 | Msa0119640:three_prime_UTR |
| TCTGATTAGAACTTTCACTG+CGG | 0.782209 | 1_3:-43771706 | Msa0119640:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTGTTTTTTGAA+TGG | + | chr1_3:43771667-43771686 | None:intergenic | 10.0% |
| !!! | ATTTTCAAGAGTTTTTTATT+TGG | - | chr1_3:43772648-43772667 | Msa0119640:CDS | 15.0% |
| !!! | GTTTTATTAATTTTTATTGC+AGG | - | chr1_3:43772889-43772908 | Msa0119640:intron | 15.0% |
| !!! | TTTTTGAATGGAAAATAGTT+GGG | + | chr1_3:43771655-43771674 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATGGAAAATAGT+TGG | + | chr1_3:43771656-43771675 | None:intergenic | 20.0% |
| !! | AGTTTATGTAACAATGTAAA+GGG | + | chr1_3:43771849-43771868 | None:intergenic | 20.0% |
| !!! | ATTCCTGCAATTTTTTTTAA+CGG | - | chr1_3:43771871-43771890 | Msa0119640:intron | 20.0% |
| !!! | TGTAATAACTTTGATTTTGA+GGG | + | chr1_3:43772333-43772352 | None:intergenic | 20.0% |
| !!! | TCATCATATCTTTTGATAAT+AGG | + | chr1_3:43772407-43772426 | None:intergenic | 20.0% |
| !! | TATTATCAAAAGATATGATG+AGG | - | chr1_3:43772406-43772425 | Msa0119640:CDS | 20.0% |
| !!! | TTGTTTTTTCTTCTATTTCA+TGG | - | chr1_3:43772621-43772640 | Msa0119640:CDS | 20.0% |
| !! | TTTAGAGAAGAATCAAAAAT+CGG | - | chr1_3:43772708-43772727 | Msa0119640:CDS | 20.0% |
| !!! | TATCAAGAAATTTTCTCTAA+CGG | - | chr1_3:43772774-43772793 | Msa0119640:CDS | 20.0% |
| !! | AAGGATGTTATAAGAAAAAA+GGG | - | chr1_3:43774191-43774210 | Msa0119640:intron | 20.0% |
| !!! | TGTTTAATCATTTTTCTCTT+AGG | + | chr1_3:43774243-43774262 | None:intergenic | 20.0% |
| !!! | ATTGTTAGCATTTTTACATA+TGG | - | chr1_3:43774500-43774519 | Msa0119640:CDS | 20.0% |
| !! | TCAAACACCTATTTATAATA+TGG | - | chr1_3:43774615-43774634 | Msa0119640:intron | 20.0% |
| !! | TCACATACCATATTATAAAT+AGG | + | chr1_3:43774625-43774644 | None:intergenic | 20.0% |
| !!! | ATATATTTTCTCTTTGAGAT+GGG | - | chr1_3:43774722-43774741 | Msa0119640:intron | 20.0% |
| ! | GTTTATGTAACAATGTAAAG+GGG | + | chr1_3:43771848-43771867 | None:intergenic | 25.0% |
| ! | GAGTTTATGTAACAATGTAA+AGG | + | chr1_3:43771850-43771869 | None:intergenic | 25.0% |
| ! | TAACATGAAATTCATTCTCA+AGG | + | chr1_3:43771950-43771969 | None:intergenic | 25.0% |
| ! | AATTCAACAAAGATCAACAT+TGG | - | chr1_3:43771977-43771996 | Msa0119640:intron | 25.0% |
| ! | GAAATGAAATACTTACTTTG+TGG | + | chr1_3:43772277-43772296 | None:intergenic | 25.0% |
| !!! | GTGTAATAACTTTGATTTTG+AGG | + | chr1_3:43772334-43772353 | None:intergenic | 25.0% |
| ! | ACATTTAATGTTGTGATTCA+GGG | - | chr1_3:43772352-43772371 | Msa0119640:three_prime_UTR | 25.0% |
| !!! | ATATCTTTTGATAATAGGAG+CGG | + | chr1_3:43772402-43772421 | None:intergenic | 25.0% |
| !! | TTCATAACTGTCAATGTTTT+TGG | - | chr1_3:43772515-43772534 | Msa0119640:CDS | 25.0% |
| ! | AAAAAACAAAAATCCATCAG+GGG | + | chr1_3:43772610-43772629 | None:intergenic | 25.0% |
| ! | GAAAAAACAAAAATCCATCA+GGG | + | chr1_3:43772611-43772630 | None:intergenic | 25.0% |
| ! | AGAAAAAACAAAAATCCATC+AGG | + | chr1_3:43772612-43772631 | None:intergenic | 25.0% |
| !!! | AACGGTAAATATTTTGATGA+TGG | - | chr1_3:43772792-43772811 | Msa0119640:CDS | 25.0% |
| !! | ATTAATTTTTATTGCAGGTG+TGG | - | chr1_3:43772894-43772913 | Msa0119640:intron | 25.0% |
| ! | TAAAGTCTTAAAGATGAGTA+GGG | - | chr1_3:43772996-43773015 | Msa0119640:CDS | 25.0% |
| ! | TTACCATCAAATGATATTTC+TGG | + | chr1_3:43773225-43773244 | None:intergenic | 25.0% |
| ! | TATGTCAATTAAGATGAGTA+AGG | - | chr1_3:43773450-43773469 | Msa0119640:CDS | 25.0% |
| !!! | AGATTTGTTGATACATTATC+AGG | + | chr1_3:43773643-43773662 | None:intergenic | 25.0% |
| !! | CTTCTAGAAATATTATCTGA+AGG | - | chr1_3:43773661-43773680 | Msa0119640:CDS | 25.0% |
| ! | TATTAAGAAATAGAGACTGT+AGG | + | chr1_3:43773769-43773788 | None:intergenic | 25.0% |
| !!! | TGAAAAAGTTTTGGAATTTC+TGG | + | chr1_3:43774161-43774180 | None:intergenic | 25.0% |
| !! | AGTTTTTGCTGAAAAAGTTT+TGG | + | chr1_3:43774170-43774189 | None:intergenic | 25.0% |
| ! | GAAGGATGTTATAAGAAAAA+AGG | - | chr1_3:43774190-43774209 | Msa0119640:intron | 25.0% |
| ! | ATGAAGTAACTCATCTTATT+TGG | - | chr1_3:43774401-43774420 | Msa0119640:CDS | 25.0% |
| ! | AAAATGCTAACAATATCACT+GGG | + | chr1_3:43774494-43774513 | None:intergenic | 25.0% |
| ! | AAAAATGCTAACAATATCAC+TGG | + | chr1_3:43774495-43774514 | None:intergenic | 25.0% |
| ! | AAAGAATAGAGTGAAGTAAA+TGG | + | chr1_3:43774538-43774557 | None:intergenic | 25.0% |
| ! | TTCACTCTATTCTTTATGTT+TGG | - | chr1_3:43774543-43774562 | Msa0119640:CDS | 25.0% |
| ! | TCACTCTATTCTTTATGTTT+GGG | - | chr1_3:43774544-43774563 | Msa0119640:CDS | 25.0% |
| !!! | TTATGTTTGGGTTATTTTGT+AGG | - | chr1_3:43774556-43774575 | Msa0119640:CDS | 25.0% |
| ! | AATATATCCTAGACATAATG+TGG | + | chr1_3:43774709-43774728 | None:intergenic | 25.0% |
| !!! | GATATATTTTCTCTTTGAGA+TGG | - | chr1_3:43774721-43774740 | Msa0119640:intron | 25.0% |
| ! | AGAGATAATTACACAAAACA+AGG | + | chr1_3:43774965-43774984 | None:intergenic | 25.0% |
| !! | AGAATAATTCAAGTTAGTTG+GGG | + | chr1_3:43775005-43775024 | None:intergenic | 25.0% |
| !! | GAGAATAATTCAAGTTAGTT+GGG | + | chr1_3:43775006-43775025 | None:intergenic | 25.0% |
| !! | TGAGAATAATTCAAGTTAGT+TGG | + | chr1_3:43775007-43775026 | None:intergenic | 25.0% |
| AAAATAGTTGGGTTATCGTT+GGG | + | chr1_3:43771644-43771663 | None:intergenic | 30.0% | |
| AAGCCGTTAAAAAAAATTGC+AGG | + | chr1_3:43771877-43771896 | None:intergenic | 30.0% | |
| ACAAAGATCAACATTGGTAA+AGG | - | chr1_3:43771983-43772002 | Msa0119640:intron | 30.0% | |
| AAGAAGAAGAAGAAGTTGTA+GGG | + | chr1_3:43772146-43772165 | None:intergenic | 30.0% | |
| GAACGGTTACATTATACTAT+TGG | - | chr1_3:43772193-43772212 | Msa0119640:intron | 30.0% | |
| TGAATCAAGCATAAACTGAA+GGG | + | chr1_3:43772305-43772324 | None:intergenic | 30.0% | |
| TTGAATCAAGCATAAACTGA+AGG | + | chr1_3:43772306-43772325 | None:intergenic | 30.0% | |
| CACATTTAATGTTGTGATTC+AGG | - | chr1_3:43772351-43772370 | Msa0119640:three_prime_UTR | 30.0% | |
| !! | ATCAAAAATCGGTACTGATT+CGG | - | chr1_3:43772719-43772738 | Msa0119640:CDS | 30.0% |
| TAAGACTTTACATTCATCTC+CGG | + | chr1_3:43772986-43773005 | None:intergenic | 30.0% | |
| GTAAAGTCTTAAAGATGAGT+AGG | - | chr1_3:43772995-43773014 | Msa0119640:CDS | 30.0% | |
| GACTTTAATATTATGCAACC+TGG | + | chr1_3:43773061-43773080 | None:intergenic | 30.0% | |
| CTTCCAGAAATATCATTTGA+TGG | - | chr1_3:43773219-43773238 | Msa0119640:intron | 30.0% | |
| GGAAAATTATGTTCCTACTT+TGG | - | chr1_3:43773369-43773388 | Msa0119640:intron | 30.0% | |
| ACATATCTTGTTCAACTTCA+AGG | + | chr1_3:43773435-43773454 | None:intergenic | 30.0% | |
| AATATTGTTCATGGTAGTAG+CGG | - | chr1_3:43773920-43773939 | Msa0119640:CDS | 30.0% | |
| !!! | ACTTTTTCAGCAAAAACTGA+AGG | - | chr1_3:43774172-43774191 | Msa0119640:intron | 30.0% |
| AGTCTCAAAATATTCAGATC+TGG | - | chr1_3:43774357-43774376 | Msa0119640:intron | 30.0% | |
| GGATTTCTAATAATGGCAAT+GGG | + | chr1_3:43774680-43774699 | None:intergenic | 30.0% | |
| AGGATTTCTAATAATGGCAA+TGG | + | chr1_3:43774681-43774700 | None:intergenic | 30.0% | |
| ! | CTTTTTACATTTTACCATCC+AGG | - | chr1_3:43774795-43774814 | Msa0119640:intron | 30.0% |
| ! | TCTTTGATATCACCTTTTAG+AGG | - | chr1_3:43774850-43774869 | Msa0119640:CDS | 30.0% |
| GAAAATAGTTGGGTTATCGT+TGG | + | chr1_3:43771645-43771664 | None:intergenic | 35.0% | |
| TGAGAGAAGAGAACATAGTT+GGG | + | chr1_3:43771720-43771739 | None:intergenic | 35.0% | |
| TTGAGAGAAGAGAACATAGT+TGG | + | chr1_3:43771721-43771740 | None:intergenic | 35.0% | |
| TGTAAAGGGGTTCTATACAA+TGG | + | chr1_3:43771835-43771854 | None:intergenic | 35.0% | |
| AAGATCAACATTGGTAAAGG+TGG | - | chr1_3:43771986-43772005 | Msa0119640:intron | 35.0% | |
| ! | TCGCGAAAGTATAATCAACA+AGG | + | chr1_3:43772034-43772053 | None:intergenic | 35.0% |
| TATCTCTCTTCAACCAAACA+TGG | - | chr1_3:43772089-43772108 | Msa0119640:intron | 35.0% | |
| AGAAGAAGAAGAAGTTGTAG+GGG | + | chr1_3:43772145-43772164 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGTTGT+AGG | + | chr1_3:43772147-43772166 | None:intergenic | 35.0% | |
| AGTATAATGTAACCGTTCGT+TGG | + | chr1_3:43772191-43772210 | None:intergenic | 35.0% | |
| CGGTTACATTATACTATTGG+TGG | - | chr1_3:43772196-43772215 | Msa0119640:intron | 35.0% | |
| ! | TAAACAGTGGTTGTTTCCTT+GGG | + | chr1_3:43772235-43772254 | None:intergenic | 35.0% |
| CAGTTATGAATACAAACCTG+AGG | + | chr1_3:43772505-43772524 | None:intergenic | 35.0% | |
| !! | TATTTGGCTTTCCTGAAAAC+TGG | - | chr1_3:43772664-43772683 | Msa0119640:CDS | 35.0% |
| !! | ATTTGGCTTTCCTGAAAACT+GGG | - | chr1_3:43772665-43772684 | Msa0119640:CDS | 35.0% |
| !! | TCAAAAATCGGTACTGATTC+GGG | - | chr1_3:43772720-43772739 | Msa0119640:CDS | 35.0% |
| AAGACTTTACATTCATCTCC+GGG | + | chr1_3:43772985-43773004 | None:intergenic | 35.0% | |
| GTAAAAATAGACGTAGTACC+AGG | - | chr1_3:43773040-43773059 | Msa0119640:CDS | 35.0% | |
| GATATAGAGACTGTAGGTAT+AGG | + | chr1_3:43773321-43773340 | None:intergenic | 35.0% | |
| TACCTACAGTCTCTATATCT+TGG | - | chr1_3:43773322-43773341 | Msa0119640:intron | 35.0% | |
| TACCAAGATATAGAGACTGT+AGG | + | chr1_3:43773327-43773346 | None:intergenic | 35.0% | |
| TTTAATTGTTGTCGCAGCTT+TGG | - | chr1_3:43773348-43773367 | Msa0119640:intron | 35.0% | |
| TGTTCCTACTTTGGTATAGT+CGG | - | chr1_3:43773378-43773397 | Msa0119640:intron | 35.0% | |
| ! | TTTTCCGACTATACCAAAGT+AGG | + | chr1_3:43773385-43773404 | None:intergenic | 35.0% |
| TACTTTGGTATAGTCGGAAA+AGG | - | chr1_3:43773384-43773403 | Msa0119640:intron | 35.0% | |
| AGTAAGGTCAATGATGTTCA+TGG | - | chr1_3:43773466-43773485 | Msa0119640:CDS | 35.0% | |
| ! | GAAGTCTTTTCCTACTTCTT+TGG | - | chr1_3:43773814-43773833 | Msa0119640:intron | 35.0% |
| ACATGTCAATTAAGACGTGT+AGG | - | chr1_3:43773894-43773913 | Msa0119640:CDS | 35.0% | |
| CATGTCAATTAAGACGTGTA+GGG | - | chr1_3:43773895-43773914 | Msa0119640:CDS | 35.0% | |
| TGTAGGGTCAATATTGTTCA+TGG | - | chr1_3:43773911-43773930 | Msa0119640:CDS | 35.0% | |
| ATATTGTTCATGGTAGTAGC+GGG | - | chr1_3:43773921-43773940 | Msa0119640:CDS | 35.0% | |
| AGGGTATAACATTATGCATC+CGG | + | chr1_3:43773961-43773980 | None:intergenic | 35.0% | |
| ATAATGTTATACCCTACCAG+AGG | - | chr1_3:43773966-43773985 | Msa0119640:CDS | 35.0% | |
| GTTATAAGAAAAAAGGGCGA+TGG | - | chr1_3:43774197-43774216 | Msa0119640:intron | 35.0% | |
| GATTTAAGTCACTCGAACAA+GGG | - | chr1_3:43774294-43774313 | Msa0119640:intron | 35.0% | |
| !!! | ATTTTGAGACTCAATGACTC+TGG | + | chr1_3:43774348-43774367 | None:intergenic | 35.0% |
| !! | GTTTGGGTTATTTTGTAGGA+AGG | - | chr1_3:43774560-43774579 | Msa0119640:CDS | 35.0% |
| GTGTGCAGGATTTCTAATAA+TGG | + | chr1_3:43774687-43774706 | None:intergenic | 35.0% | |
| !!! | TTTTCTCTTTGAGATGGGTA+AGG | - | chr1_3:43774727-43774746 | Msa0119640:intron | 35.0% |
| CCTGAATTTCTGTAATCTCA+CGG | + | chr1_3:43774822-43774841 | None:intergenic | 35.0% | |
| GAGATTACAGAAATTCAGGA+AGG | - | chr1_3:43774823-43774842 | Msa0119640:CDS | 35.0% | |
| TCTGATTAGAACTTTCACTG+CGG | - | chr1_3:43774929-43774948 | Msa0119640:exon | 35.0% | |
| ATTCGTATGGGTTTCGACTT+TGG | + | chr1_3:43771747-43771766 | None:intergenic | 40.0% | |
| !! | AATGGCGGATAGAGAAATAG+AGG | + | chr1_3:43771817-43771836 | None:intergenic | 40.0% |
| AAAGGGGTTCTATACAATGG+CGG | + | chr1_3:43771832-43771851 | None:intergenic | 40.0% | |
| ! | CGTTGTTGTTGTTGTGAAAC+AGG | - | chr1_3:43771906-43771925 | Msa0119640:intron | 40.0% |
| AGAGAGATAAGTGAGATGAG+AGG | + | chr1_3:43772078-43772097 | None:intergenic | 40.0% | |
| TTCATCTTGCTTCCAACGAA+CGG | - | chr1_3:43772176-43772195 | Msa0119640:intron | 40.0% | |
| ! | CTAAACAGTGGTTGTTTCCT+TGG | + | chr1_3:43772236-43772255 | None:intergenic | 40.0% |
| TTACTTTGTGGAAGAGATGC+CGG | + | chr1_3:43772265-43772284 | None:intergenic | 40.0% | |
| TATACCATCGACAGTCTCAA+GGG | + | chr1_3:43772435-43772454 | None:intergenic | 40.0% | |
| ATATACCATCGACAGTCTCA+AGG | + | chr1_3:43772436-43772455 | None:intergenic | 40.0% | |
| ATTAGATAAACAACGCACGC+TGG | - | chr1_3:43772465-43772484 | Msa0119640:CDS | 40.0% | |
| ! | GGATAATGCTTTTACTCCTC+AGG | - | chr1_3:43772486-43772505 | Msa0119640:CDS | 40.0% |
| ! | TCTAAAGCAAGCTAGAACAG+AGG | + | chr1_3:43772694-43772713 | None:intergenic | 40.0% |
| AAAGTCCATTCCTACTTCGT+CGG | - | chr1_3:43772918-43772937 | Msa0119640:intron | 40.0% | |
| AAATACCGACGAAGTAGGAA+TGG | + | chr1_3:43772926-43772945 | None:intergenic | 40.0% | |
| TGGAGTCTTGCAATTCTCTA+GGG | + | chr1_3:43772959-43772978 | None:intergenic | 40.0% | |
| ATGGAGTCTTGCAATTCTCT+AGG | + | chr1_3:43772960-43772979 | None:intergenic | 40.0% | |
| AGACTTTACATTCATCTCCG+GGG | + | chr1_3:43772984-43773003 | None:intergenic | 40.0% | |
| GGCCATGGAAAATCATGATT+CGG | - | chr1_3:43773164-43773183 | Msa0119640:CDS | 40.0% | |
| ! | GTCCGAATCATGATTTTCCA+TGG | + | chr1_3:43773169-43773188 | None:intergenic | 40.0% |
| !! | AGACTTGCTGGTACATTATC+CGG | + | chr1_3:43773201-43773220 | None:intergenic | 40.0% |
| !! | GATATTTCTGGAAGACTTGC+TGG | + | chr1_3:43773213-43773232 | None:intergenic | 40.0% |
| GTCAATGATGTTCATGGTAG+TGG | - | chr1_3:43773472-43773491 | Msa0119640:CDS | 40.0% | |
| AGTCCTTAGCATTATGCAAC+CGG | + | chr1_3:43773516-43773535 | None:intergenic | 40.0% | |
| TCTTTCTCTGGATTCTTGAG+AGG | + | chr1_3:43773568-43773587 | None:intergenic | 40.0% | |
| ATGATCTTCCACAACCTTCA+AGG | + | chr1_3:43773602-43773621 | None:intergenic | 40.0% | |
| GGTTGTGGAAGATCATGATT+TGG | - | chr1_3:43773606-43773625 | Msa0119640:CDS | 40.0% | |
| TTCAAATGTTGTCACAGCTG+TGG | - | chr1_3:43773790-43773809 | Msa0119640:intron | 40.0% | |
| TCCTACTTCTTTGGTATCAC+CGG | - | chr1_3:43773823-43773842 | Msa0119640:intron | 40.0% | |
| AGGCACTTCTTGAAGATGAA+CGG | - | chr1_3:43773870-43773889 | Msa0119640:CDS | 40.0% | |
| GGGTATAACATTATGCATCC+GGG | + | chr1_3:43773960-43773979 | None:intergenic | 40.0% | |
| TCTTTATCTGGATGTGTTGC+AGG | + | chr1_3:43774013-43774032 | None:intergenic | 40.0% | |
| !! | ACACCGGTTCAGTCAAAAAA+GGG | - | chr1_3:43774091-43774110 | Msa0119640:intron | 40.0% |
| !!! | CTTCCCTTTTTTGACTGAAC+CGG | + | chr1_3:43774097-43774116 | None:intergenic | 40.0% |
| GAAGAGTGAACACAATGTCT+GGG | - | chr1_3:43774113-43774132 | Msa0119640:intron | 40.0% | |
| TCTTCTGTAAAATCTCCTCG+AGG | - | chr1_3:43774267-43774286 | Msa0119640:intron | 40.0% | |
| GGATTTAAGTCACTCGAACA+AGG | - | chr1_3:43774293-43774312 | Msa0119640:intron | 40.0% | |
| !! | TGGGTTATTTTGTAGGAAGG+TGG | - | chr1_3:43774563-43774582 | Msa0119640:CDS | 40.0% |
| ! | TTCTACCTCGCTTAGAGTTT+TGG | - | chr1_3:43774587-43774606 | Msa0119640:intron | 40.0% |
| AGATGGGTAAGGCAAACAAT+GGG | - | chr1_3:43774738-43774757 | Msa0119640:intron | 40.0% | |
| CCGTGAGATTACAGAAATTC+AGG | - | chr1_3:43774819-43774838 | Msa0119640:intron | 40.0% | |
| TATGACGAAGAGCCTCTAAA+AGG | + | chr1_3:43774865-43774884 | None:intergenic | 40.0% | |
| !! | TTTTAGAGGCTCTTCGTCAT+AGG | - | chr1_3:43774864-43774883 | Msa0119640:CDS | 40.0% |
| TTTAGAGGCTCTTCGTCATA+GGG | - | chr1_3:43774865-43774884 | Msa0119640:CDS | 40.0% | |
| AGTTGGGGCAGAGATAATTA+CGG | + | chr1_3:43774990-43775009 | None:intergenic | 40.0% | |
| AGAGAAATAGAGGAGACCGA+TGG | + | chr1_3:43771807-43771826 | None:intergenic | 45.0% | |
| GGGGTGCAATTAGAAGAAGT+AGG | + | chr1_3:43772126-43772145 | None:intergenic | 45.0% | |
| TGGCTCGTTAAATCATCCCA+AGG | - | chr1_3:43772216-43772235 | Msa0119640:intron | 45.0% | |
| AACCACTGTTTAGCCATCTC+CGG | - | chr1_3:43772243-43772262 | Msa0119640:intron | 45.0% | |
| GTTGTGATTCAGGGAAGAAG+CGG | - | chr1_3:43772361-43772380 | Msa0119640:three_prime_UTR | 45.0% | |
| AGTTTCATTGCTACCCCTGA+TGG | - | chr1_3:43772594-43772613 | Msa0119640:CDS | 45.0% | |
| ! | ACAGAGGTTTCCCAGTTTTC+AGG | + | chr1_3:43772678-43772697 | None:intergenic | 45.0% |
| !! | TGATTCGGGCAATGCTGTTT+TGG | - | chr1_3:43772734-43772753 | Msa0119640:CDS | 45.0% |
| TCAGGAAATACCGACGAAGT+AGG | + | chr1_3:43772931-43772950 | None:intergenic | 45.0% | |
| TTCGTCGGTATTTCCTGAAG+AGG | - | chr1_3:43772933-43772952 | Msa0119640:intron | 45.0% | |
| AATTGCAAGACTCCATTCCC+CGG | - | chr1_3:43772964-43772983 | Msa0119640:intron | 45.0% | |
| TTACATTCATCTCCGGGGAA+TGG | + | chr1_3:43772979-43772998 | None:intergenic | 45.0% | |
| !! | AGTAGGGTTGATGTTGCTTG+TGG | - | chr1_3:43773012-43773031 | Msa0119640:CDS | 45.0% |
| ! | GTTGATGTTGCTTGTGGTAG+TGG | - | chr1_3:43773018-43773037 | Msa0119640:CDS | 45.0% |
| TTGAAAGGACCTCTACACTC+AGG | + | chr1_3:43773111-43773130 | None:intergenic | 45.0% | |
| TCTCCATCTGGATGCTTGAA+AGG | + | chr1_3:43773126-43773145 | None:intergenic | 45.0% | |
| !! | ATGGCCTTTGAAGTAGAGCT+CGG | + | chr1_3:43773150-43773169 | None:intergenic | 45.0% |
| ! | TGATTCGGACACTGTTGTTC+CGG | - | chr1_3:43773179-43773198 | Msa0119640:CDS | 45.0% |
| CGACTTATTGCAATCTCTCG+TGG | + | chr1_3:43773410-43773429 | None:intergenic | 45.0% | |
| !! | ATGATGTTCATGGTAGTGGC+CGG | - | chr1_3:43773476-43773495 | Msa0119640:CDS | 45.0% |
| TCCGGTGATACCAAAGAAGT+AGG | + | chr1_3:43773827-43773846 | None:intergenic | 45.0% | |
| GGCACTTCTTGAAGATGAAC+GGG | - | chr1_3:43773871-43773890 | Msa0119640:CDS | 45.0% | |
| ! | GCAGAGATCTGGTCTTTATC+TGG | + | chr1_3:43774025-43774044 | None:intergenic | 45.0% |
| ACTCAATTCCAAGGCTGCTA+AGG | + | chr1_3:43774047-43774066 | None:intergenic | 45.0% | |
| TCCTCCATCACTCAATTCCA+AGG | + | chr1_3:43774056-43774075 | None:intergenic | 45.0% | |
| ACTGGAAAGTCTATCGACAC+CGG | - | chr1_3:43774075-43774094 | Msa0119640:intron | 45.0% | |
| !! | GACACCGGTTCAGTCAAAAA+AGG | - | chr1_3:43774090-43774109 | Msa0119640:intron | 45.0% |
| GGAAGAGTGAACACAATGTC+TGG | - | chr1_3:43774112-43774131 | Msa0119640:intron | 45.0% | |
| TGTAAAATCTCCTCGAGGCA+GGG | - | chr1_3:43774272-43774291 | Msa0119640:intron | 45.0% | |
| ! | CAATGACTCTGGAGAAACTG+TGG | + | chr1_3:43774337-43774356 | None:intergenic | 45.0% |
| ! | TATCACTGGGTGAGAAGTGT+TGG | + | chr1_3:43774481-43774500 | None:intergenic | 45.0% |
| CTAGACATAATGTGGTGTGC+AGG | + | chr1_3:43774701-43774720 | None:intergenic | 45.0% | |
| CTGCACACCACATTATGTCT+AGG | - | chr1_3:43774699-43774718 | Msa0119640:intron | 45.0% | |
| GAGATGGGTAAGGCAAACAA+TGG | - | chr1_3:43774737-43774756 | Msa0119640:intron | 45.0% | |
| TTTCTGTAATCTCACGGTCC+TGG | + | chr1_3:43774816-43774835 | None:intergenic | 45.0% | |
| GTTGGGGCAGAGATAATTAC+GGG | + | chr1_3:43774989-43775008 | None:intergenic | 45.0% | |
| CAGATGGTGCGGATTCGTAT+GGG | + | chr1_3:43771759-43771778 | None:intergenic | 50.0% | |
| AAAGGTGGTTGTGTTGCGAC+TGG | - | chr1_3:43772001-43772020 | Msa0119640:intron | 50.0% | |
| AAGGTGGTTGTGTTGCGACT+GGG | - | chr1_3:43772002-43772021 | Msa0119640:intron | 50.0% | |
| GGAGTGAAGTCAGCCATGTT+TGG | + | chr1_3:43772105-43772124 | None:intergenic | 50.0% | |
| GATTCAGGGAAGAAGCGGTT+CGG | - | chr1_3:43772366-43772385 | Msa0119640:three_prime_UTR | 50.0% | |
| ATTCAGGGAAGAAGCGGTTC+GGG | - | chr1_3:43772367-43772386 | Msa0119640:three_prime_UTR | 50.0% | |
| GTTTCCCTTGAGACTGTCGA+TGG | - | chr1_3:43772428-43772447 | Msa0119640:CDS | 50.0% | |
| !! | CAATTCTCTAGGGCCTCTTC+AGG | + | chr1_3:43772949-43772968 | None:intergenic | 50.0% |
| AAGCAGCATCCTGAGTGTAG+AGG | - | chr1_3:43773099-43773118 | Msa0119640:CDS | 50.0% | |
| GGTCCTTTCAAGCATCCAGA+TGG | - | chr1_3:43773120-43773139 | Msa0119640:CDS | 50.0% | |
| AGAGCCGAGCTCTACTTCAA+AGG | - | chr1_3:43773143-43773162 | Msa0119640:CDS | 50.0% | |
| GAGCTCTACTTCAAAGGCCA+TGG | - | chr1_3:43773149-43773168 | Msa0119640:CDS | 50.0% | |
| TGGCCGGTTGCATAATGCTA+AGG | - | chr1_3:43773510-43773529 | Msa0119640:CDS | 50.0% | |
| GTAGAGCTCTGCTCTTTCTC+TGG | + | chr1_3:43773580-43773599 | None:intergenic | 50.0% | |
| AGAGCAGAGCTCTACCTTGA+AGG | - | chr1_3:43773585-43773604 | Msa0119640:CDS | 50.0% | |
| GAGCTCTACCTTGAAGGTTG+TGG | - | chr1_3:43773591-43773610 | Msa0119640:CDS | 50.0% | |
| !! | CGATCTCTCGTGGTCTTATC+CGG | + | chr1_3:43773845-43773864 | None:intergenic | 50.0% |
| GCAGCCTTGGAATTGAGTGA+TGG | - | chr1_3:43774049-43774068 | Msa0119640:intron | 50.0% | |
| GCCTTGGAATTGAGTGATGG+AGG | - | chr1_3:43774052-43774071 | Msa0119640:intron | 50.0% | |
| ! | GGAATTGAGTGATGGAGGAC+TGG | - | chr1_3:43774057-43774076 | Msa0119640:intron | 50.0% |
| AGTGAACACAATGTCTGGGC+AGG | - | chr1_3:43774117-43774136 | Msa0119640:intron | 50.0% | |
| GGCGATGGTTGAAACAGAAG+CGG | - | chr1_3:43774212-43774231 | Msa0119640:CDS | 50.0% | |
| CTGTAAAATCTCCTCGAGGC+AGG | - | chr1_3:43774271-43774290 | Msa0119640:intron | 50.0% | |
| TGACTTAAATCCCTGCCTCG+AGG | + | chr1_3:43774285-43774304 | None:intergenic | 50.0% | |
| TTGCGCCAAAACTCTAAGCG+AGG | + | chr1_3:43774595-43774614 | None:intergenic | 50.0% | |
| TGTAATCTCACGGTCCTGGA+TGG | + | chr1_3:43774812-43774831 | None:intergenic | 50.0% | |
| GCAGATGGTGCGGATTCGTA+TGG | + | chr1_3:43771760-43771779 | None:intergenic | 55.0% | |
| TACGAATCCGCACCATCTGC+CGG | - | chr1_3:43771760-43771779 | Msa0119640:three_prime_UTR | 55.0% | |
| TAGAGGAGACCGATGGAGTG+TGG | + | chr1_3:43771800-43771819 | None:intergenic | 55.0% | |
| TGCCGGAGATGGCTAAACAG+TGG | + | chr1_3:43772248-43772267 | None:intergenic | 55.0% | |
| TGTGGAAGAGATGCCGGAGA+TGG | + | chr1_3:43772259-43772278 | None:intergenic | 55.0% | |
| TTGAGAGGATCTCCAGACGC+AGG | + | chr1_3:43773553-43773572 | None:intergenic | 55.0% | |
| GACCACGAGAGATCGCAACA+AGG | - | chr1_3:43773850-43773869 | Msa0119640:intron | 55.0% | |
| ! | TGCCTTGTTGCGATCTCTCG+TGG | + | chr1_3:43773855-43773874 | None:intergenic | 55.0% |
| GCAGGTTGCTTCCTCTGGTA+GGG | + | chr1_3:43773980-43773999 | None:intergenic | 55.0% | |
| AGCAGGTTGCTTCCTCTGGT+AGG | + | chr1_3:43773981-43774000 | None:intergenic | 55.0% | |
| CAGTAGCAGGTTGCTTCCTC+TGG | + | chr1_3:43773985-43774004 | None:intergenic | 55.0% | |
| CAGAGGAAGCAACCTGCTAC+TGG | - | chr1_3:43773983-43774002 | Msa0119640:CDS | 55.0% | |
| GTTGCAGGATCTCCAGTAGC+AGG | + | chr1_3:43773998-43774017 | None:intergenic | 55.0% | |
| AGGCTGCTAAGGCAGAGATC+TGG | + | chr1_3:43774036-43774055 | None:intergenic | 55.0% | |
| GATCTCTGCCTTAGCAGCCT+TGG | - | chr1_3:43774036-43774055 | Msa0119640:intron | 55.0% | |
| AGACCGATGGAGTGTGGTGG+TGG | + | chr1_3:43771794-43771813 | None:intergenic | 60.0% | |
| AGGAGACCGATGGAGTGTGG+TGG | + | chr1_3:43771797-43771816 | None:intergenic | 60.0% | |
| GTAGAGCTCGGCTCTCCATC+TGG | + | chr1_3:43773138-43773157 | None:intergenic | 60.0% | |
| ! | AGTGGCCGGACTAGACGTAG+TGG | - | chr1_3:43773490-43773509 | Msa0119640:CDS | 60.0% |
| ACCGGCCACTACGTCTAGTC+CGG | + | chr1_3:43773498-43773517 | None:intergenic | 60.0% | |
| CAGACGCAGGCTGCTTCTTC+TGG | + | chr1_3:43773540-43773559 | None:intergenic | 60.0% | |
| CAGAAGAAGCAGCCTGCGTC+TGG | - | chr1_3:43773538-43773557 | Msa0119640:CDS | 60.0% | |
| GCGGGAATAGACGTAGTGCC+CGG | - | chr1_3:43773939-43773958 | Msa0119640:CDS | 60.0% | |
| GAGGCTCTTCGTCATAGGGC+AGG | - | chr1_3:43774869-43774888 | Msa0119640:CDS | 60.0% | |
| GCGCCACCACCACACTCCAT+CGG | - | chr1_3:43771788-43771807 | Msa0119640:three_prime_UTR | 65.0% | |
| ! | GCCGGACTAGACGTAGTGGC+CGG | - | chr1_3:43773494-43773513 | Msa0119640:CDS | 65.0% |
| GCAGCTGCCGGCAGATGGTG+CGG | + | chr1_3:43771770-43771789 | None:intergenic | 70.0% | |
| !! | TGTGGTGGTGGCGCAGCTGC+CGG | + | chr1_3:43771782-43771801 | None:intergenic | 70.0% |
| GTGGCGCAGCTGCCGGCAGA+TGG | + | chr1_3:43771775-43771794 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 43771624 | 43775033 | 43771624 | ID=Msa0119640;Name=Msa0119640 |
| chr1_3 | mRNA | 43771624 | 43775033 | 43771624 | ID=Msa0119640-mRNA-1;Parent=Msa0119640;Name=Msa0119640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=100|0.6|0.45|1|0.6|0.45|11|399|534 |
| chr1_3 | exon | 43771624 | 43771840 | 43771624 | ID=Msa0119640-mRNA-1:exon:13121;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43772021 | 43772079 | 43772021 | ID=Msa0119640-mRNA-1:exon:13120;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43772279 | 43772850 | 43772279 | ID=Msa0119640-mRNA-1:exon:13119;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43772975 | 43773217 | 43772975 | ID=Msa0119640-mRNA-1:exon:13118;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43773417 | 43773567 | 43773417 | ID=Msa0119640-mRNA-1:exon:13117;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43773580 | 43773746 | 43773580 | ID=Msa0119640-mRNA-1:exon:13116;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43773862 | 43774009 | 43773862 | ID=Msa0119640-mRNA-1:exon:13115;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43774150 | 43774187 | 43774150 | ID=Msa0119640-mRNA-1:exon:13114;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43774208 | 43774284 | 43774208 | ID=Msa0119640-mRNA-1:exon:13113;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43774377 | 43774595 | 43774377 | ID=Msa0119640-mRNA-1:exon:13112;Parent=Msa0119640-mRNA-1 |
| chr1_3 | exon | 43774821 | 43775033 | 43774821 | ID=Msa0119640-mRNA-1:exon:13111;Parent=Msa0119640-mRNA-1 |
| chr1_3 | five_prime_UTR | 43774934 | 43775033 | 43774934 | ID=Msa0119640-mRNA-1:five_prime_utr;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43774821 | 43774933 | 43774821 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43774377 | 43774595 | 43774377 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43774208 | 43774284 | 43774208 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43774150 | 43774187 | 43774150 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43773862 | 43774009 | 43773862 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43773580 | 43773746 | 43773580 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43773417 | 43773567 | 43773417 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43772975 | 43773217 | 43772975 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | CDS | 43772402 | 43772850 | 43772402 | ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1 |
| chr1_3 | three_prime_UTR | 43772279 | 43772401 | 43772279 | ID=Msa0119640-mRNA-1:three_prime_utr;Parent=Msa0119640-mRNA-1 |
| chr1_3 | three_prime_UTR | 43772021 | 43772079 | 43772021 | ID=Msa0119640-mRNA-1:three_prime_utr;Parent=Msa0119640-mRNA-1 |
| chr1_3 | three_prime_UTR | 43771624 | 43771840 | 43771624 | ID=Msa0119640-mRNA-1:three_prime_utr;Parent=Msa0119640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
