AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0119640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119640 MtrunA17_Chr1g0182621 78.926 503 63 6 54 520 1 496 0.0 741
Msa0119640 MtrunA17_Chr1g0182611 49.136 405 156 8 54 413 1 400 3.75e-107 328
Msa0119640 MtrunA17_Chr1g0182611 57.414 263 85 2 285 520 131 393 7.62e-82 263
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119640 AT5G02520.2 37.931 116 59 4 76 179 11 125 1.49e-14 77.0
Msa0119640 AT5G02520.1 37.931 116 59 4 76 179 11 125 1.57e-14 77.0
Msa0119640 AT5G02520.3 37.931 116 59 4 76 179 11 125 2.09e-14 76.3

Find 157 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCATCAAATGATATTTC+TGG 0.210331 1_3:+43773413 None:intergenic
TTCTACCTCGCTTAGAGTTT+TGG 0.216024 1_3:-43772048 Msa0119640:three_prime_UTR
CAGACGCAGGCTGCTTCTTC+TGG 0.244492 1_3:+43773098 None:intergenic
TCTTTATCTGGATGTGTTGC+AGG 0.273995 1_3:+43772625 None:intergenic
TGATTCGGGCAATGCTGTTT+TGG 0.283336 1_3:-43773901 Msa0119640:CDS
TATTTGGCTTTCCTGAAAAC+TGG 0.288842 1_3:-43773971 Msa0119640:CDS
TCAAACACCTATTTATAATA+TGG 0.307116 1_3:-43772020 Msa0119640:intron
AGATTTGTTGATACATTATC+AGG 0.314230 1_3:+43772995 None:intergenic
TCACATACCATATTATAAAT+AGG 0.322514 1_3:+43772013 None:intergenic
GAACGGTTACATTATACTAT+TGG 0.334226 1_3:-43774442 Msa0119640:CDS
CCGTGAGATTACAGAAATTC+AGG 0.340294 1_3:-43771816 Msa0119640:three_prime_UTR
GATATTTCTGGAAGACTTGC+TGG 0.351730 1_3:+43773425 None:intergenic
CTAAACAGTGGTTGTTTCCT+TGG 0.353316 1_3:+43774402 None:intergenic
GAGAATAATTCAAGTTAGTT+GGG 0.353501 1_3:+43771632 None:intergenic
ATTCGTATGGGTTTCGACTT+TGG 0.355577 1_3:+43774891 None:intergenic
GTAGAGCTCTGCTCTTTCTC+TGG 0.362481 1_3:+43773058 None:intergenic
TGAGAATAATTCAAGTTAGT+TGG 0.362684 1_3:+43771631 None:intergenic
CAATTCTCTAGGGCCTCTTC+AGG 0.370219 1_3:+43773689 None:intergenic
GCAGAGATCTGGTCTTTATC+TGG 0.370773 1_3:+43772613 None:intergenic
CTTCCAGAAATATCATTTGA+TGG 0.374155 1_3:-43773416 Msa0119640:intron
CAGTAGCAGGTTGCTTCCTC+TGG 0.377946 1_3:+43772653 None:intergenic
GGAAGAGTGAACACAATGTC+TGG 0.382786 1_3:-43772523 Msa0119640:CDS
GTAGAGCTCGGCTCTCCATC+TGG 0.403978 1_3:+43773500 None:intergenic
TAAACAGTGGTTGTTTCCTT+GGG 0.406143 1_3:+43774403 None:intergenic
CAGAAGAAGCAGCCTGCGTC+TGG 0.410230 1_3:-43773097 Msa0119640:CDS
TGATTCGGACACTGTTGTTC+CGG 0.410442 1_3:-43773456 Msa0119640:CDS
TATGACGAAGAGCCTCTAAA+AGG 0.413831 1_3:+43771773 None:intergenic
CGATCTCTCGTGGTCTTATC+CGG 0.415374 1_3:+43772793 None:intergenic
TGTGGTGGTGGCGCAGCTGC+CGG 0.417426 1_3:+43774856 None:intergenic
GTTGATGTTGCTTGTGGTAG+TGG 0.418847 1_3:-43773617 Msa0119640:CDS
TTGAGAGAAGAGAACATAGT+TGG 0.421570 1_3:+43774917 None:intergenic
ATTCAGGGAAGAAGCGGTTC+GGG 0.422473 1_3:-43774268 Msa0119640:intron
AGACTTGCTGGTACATTATC+CGG 0.428747 1_3:+43773437 None:intergenic
ATGATCTTCCACAACCTTCA+AGG 0.433807 1_3:+43773036 None:intergenic
GATCTCTGCCTTAGCAGCCT+TGG 0.438669 1_3:-43772599 Msa0119640:CDS
AGGGTATAACATTATGCATC+CGG 0.438930 1_3:+43772677 None:intergenic
TCCTACTTCTTTGGTATCAC+CGG 0.443039 1_3:-43772812 Msa0119640:CDS
GGTTGTGGAAGATCATGATT+TGG 0.444376 1_3:-43773029 Msa0119640:CDS
CAGAGGAAGCAACCTGCTAC+TGG 0.444849 1_3:-43772652 Msa0119640:CDS
GTTGGGGCAGAGATAATTAC+GGG 0.448071 1_3:+43771649 None:intergenic
GGCACTTCTTGAAGATGAAC+GGG 0.448402 1_3:-43772764 Msa0119640:CDS
AAAATAGTTGGGTTATCGTT+GGG 0.448632 1_3:+43774994 None:intergenic
GGAGTGAAGTCAGCCATGTT+TGG 0.454396 1_3:+43774533 None:intergenic
GATTCAGGGAAGAAGCGGTT+CGG 0.454911 1_3:-43774269 Msa0119640:intron
GAAAATAGTTGGGTTATCGT+TGG 0.458276 1_3:+43774993 None:intergenic
AGTTGGGGCAGAGATAATTA+CGG 0.461487 1_3:+43771648 None:intergenic
GGCCATGGAAAATCATGATT+CGG 0.462249 1_3:-43773471 Msa0119640:CDS
CTGTAAAATCTCCTCGAGGC+AGG 0.462276 1_3:-43772364 Msa0119640:three_prime_UTR
TAAGACTTTACATTCATCTC+CGG 0.463168 1_3:+43773652 None:intergenic
TGTAGGGTCAATATTGTTCA+TGG 0.465459 1_3:-43772724 Msa0119640:CDS
GTCAATGATGTTCATGGTAG+TGG 0.469318 1_3:-43773163 Msa0119640:CDS
AGTCCTTAGCATTATGCAAC+CGG 0.471012 1_3:+43773122 None:intergenic
GCAGATGGTGCGGATTCGTA+TGG 0.472057 1_3:+43774878 None:intergenic
TACGAATCCGCACCATCTGC+CGG 0.478465 1_3:-43774875 Msa0119640:CDS
ATGGAGTCTTGCAATTCTCT+AGG 0.479998 1_3:+43773678 None:intergenic
TCTCCATCTGGATGCTTGAA+AGG 0.480546 1_3:+43773512 None:intergenic
AGTAAGGTCAATGATGTTCA+TGG 0.481620 1_3:-43773169 Msa0119640:CDS
GTAAAGTCTTAAAGATGAGT+AGG 0.481739 1_3:-43773640 Msa0119640:CDS
GAGCTCTACCTTGAAGGTTG+TGG 0.482477 1_3:-43773044 Msa0119640:CDS
TTACATTCATCTCCGGGGAA+TGG 0.483495 1_3:+43773659 None:intergenic
AGTCTCAAAATATTCAGATC+TGG 0.485810 1_3:-43772278 Msa0119640:intron
GTGGCGCAGCTGCCGGCAGA+TGG 0.493346 1_3:+43774863 None:intergenic
TCTTTCTCTGGATTCTTGAG+AGG 0.504491 1_3:+43773070 None:intergenic
TTTAGAGGCTCTTCGTCATA+GGG 0.504581 1_3:-43771770 Msa0119640:three_prime_UTR
TATGTCAATTAAGATGAGTA+AGG 0.506587 1_3:-43773185 Msa0119640:CDS
AGAGCAGAGCTCTACCTTGA+AGG 0.508453 1_3:-43773050 Msa0119640:CDS
AAGACTTTACATTCATCTCC+GGG 0.513597 1_3:+43773653 None:intergenic
ATTTGGCTTTCCTGAAAACT+GGG 0.514503 1_3:-43773970 Msa0119640:CDS
CGGTTACATTATACTATTGG+TGG 0.515241 1_3:-43774439 Msa0119640:CDS
AGACCGATGGAGTGTGGTGG+TGG 0.516213 1_3:+43774844 None:intergenic
ACTCAATTCCAAGGCTGCTA+AGG 0.517166 1_3:+43772591 None:intergenic
TTACTTTGTGGAAGAGATGC+CGG 0.520785 1_3:+43774373 None:intergenic
TAAAGTCTTAAAGATGAGTA+GGG 0.521632 1_3:-43773639 Msa0119640:CDS
AGGCTGCTAAGGCAGAGATC+TGG 0.526441 1_3:+43772602 None:intergenic
ACCGGCCACTACGTCTAGTC+CGG 0.527410 1_3:+43773140 None:intergenic
AATGGCGGATAGAGAAATAG+AGG 0.528768 1_3:+43774821 None:intergenic
AACCACTGTTTAGCCATCTC+CGG 0.530631 1_3:-43774392 Msa0119640:CDS
TTCATCTTGCTTCCAACGAA+CGG 0.532011 1_3:-43774459 Msa0119640:CDS
GCAGGTTGCTTCCTCTGGTA+GGG 0.532042 1_3:+43772658 None:intergenic
AGTATAATGTAACCGTTCGT+TGG 0.532635 1_3:+43774447 None:intergenic
AGCAGGTTGCTTCCTCTGGT+AGG 0.534074 1_3:+43772657 None:intergenic
TGAGAGAAGAGAACATAGTT+GGG 0.534272 1_3:+43774918 None:intergenic
GCAGCTGCCGGCAGATGGTG+CGG 0.537213 1_3:+43774868 None:intergenic
GAGCTCTACTTCAAAGGCCA+TGG 0.540083 1_3:-43773486 Msa0119640:CDS
TCAGGAAATACCGACGAAGT+AGG 0.541822 1_3:+43773707 None:intergenic
GAGGCTCTTCGTCATAGGGC+AGG 0.543121 1_3:-43771766 Msa0119640:three_prime_UTR
GACTTTAATATTATGCAACC+TGG 0.548218 1_3:+43773577 None:intergenic
ATGGCCTTTGAAGTAGAGCT+CGG 0.551924 1_3:+43773488 None:intergenic
GGATTTAAGTCACTCGAACA+AGG 0.552444 1_3:-43772342 Msa0119640:three_prime_UTR
TCTAAAGCAAGCTAGAACAG+AGG 0.552946 1_3:+43773944 None:intergenic
CAGATGGTGCGGATTCGTAT+GGG 0.553016 1_3:+43774879 None:intergenic
CCTGAATTTCTGTAATCTCA+CGG 0.553835 1_3:+43771816 None:intergenic
TGTGGAAGAGATGCCGGAGA+TGG 0.553990 1_3:+43774379 None:intergenic
AGTGAACACAATGTCTGGGC+AGG 0.558749 1_3:-43772518 Msa0119640:CDS
GTTGCAGGATCTCCAGTAGC+AGG 0.559749 1_3:+43772640 None:intergenic
TGCCTTGTTGCGATCTCTCG+TGG 0.562225 1_3:+43772783 None:intergenic
TGTAAAATCTCCTCGAGGCA+GGG 0.563211 1_3:-43772363 Msa0119640:three_prime_UTR
ACATGTCAATTAAGACGTGT+AGG 0.567831 1_3:-43772741 Msa0119640:CDS
TCCTCCATCACTCAATTCCA+AGG 0.568898 1_3:+43772582 None:intergenic
CTTCTAGAAATATTATCTGA+AGG 0.573145 1_3:-43772974 Msa0119640:intron
TTCGTCGGTATTTCCTGAAG+AGG 0.573272 1_3:-43773702 Msa0119640:CDS
AGAGAGATAAGTGAGATGAG+AGG 0.573344 1_3:+43774560 None:intergenic
TCCGGTGATACCAAAGAAGT+AGG 0.573504 1_3:+43772811 None:intergenic
TGGAGTCTTGCAATTCTCTA+GGG 0.573608 1_3:+43773679 None:intergenic
AATTGCAAGACTCCATTCCC+CGG 0.573734 1_3:-43773671 Msa0119640:CDS
ATGATGTTCATGGTAGTGGC+CGG 0.574449 1_3:-43773159 Msa0119640:CDS
ATATTGTTCATGGTAGTAGC+GGG 0.576380 1_3:-43772714 Msa0119640:CDS
AGTAGGGTTGATGTTGCTTG+TGG 0.577027 1_3:-43773623 Msa0119640:CDS
GCGCCACCACCACACTCCAT+CGG 0.578661 1_3:-43774847 Msa0119640:CDS
AGGCACTTCTTGAAGATGAA+CGG 0.580313 1_3:-43772765 Msa0119640:CDS
TGGCCGGTTGCATAATGCTA+AGG 0.580438 1_3:-43773125 Msa0119640:CDS
AGAATAATTCAAGTTAGTTG+GGG 0.581581 1_3:+43771633 None:intergenic
AGAGAAATAGAGGAGACCGA+TGG 0.581695 1_3:+43774831 None:intergenic
AAATACCGACGAAGTAGGAA+TGG 0.585417 1_3:+43773712 None:intergenic
GGAATTGAGTGATGGAGGAC+TGG 0.585638 1_3:-43772578 Msa0119640:CDS
GCGGGAATAGACGTAGTGCC+CGG 0.588199 1_3:-43772696 Msa0119640:CDS
GGTCCTTTCAAGCATCCAGA+TGG 0.591432 1_3:-43773515 Msa0119640:CDS
ATTAGATAAACAACGCACGC+TGG 0.593171 1_3:-43774170 Msa0119640:intron
GAAGAGTGAACACAATGTCT+GGG 0.597638 1_3:-43772522 Msa0119640:CDS
GCAGCCTTGGAATTGAGTGA+TGG 0.604319 1_3:-43772586 Msa0119640:CDS
AGAAGAAGAAGAAGTTGTAG+GGG 0.606103 1_3:+43774493 None:intergenic
GTTTCCCTTGAGACTGTCGA+TGG 0.607459 1_3:-43774207 Msa0119640:intron
GATTTAAGTCACTCGAACAA+GGG 0.607943 1_3:-43772341 Msa0119640:three_prime_UTR
GCCTTGGAATTGAGTGATGG+AGG 0.608447 1_3:-43772583 Msa0119640:CDS
CATGTCAATTAAGACGTGTA+GGG 0.610651 1_3:-43772740 Msa0119640:CDS
GGGTATAACATTATGCATCC+GGG 0.611212 1_3:+43772678 None:intergenic
TATCTCTCTTCAACCAAACA+TGG 0.611266 1_3:-43774546 Msa0119640:CDS
ATATACCATCGACAGTCTCA+AGG 0.611734 1_3:+43774202 None:intergenic
AAAGTCCATTCCTACTTCGT+CGG 0.613142 1_3:-43773717 Msa0119640:CDS
TTGAGAGGATCTCCAGACGC+AGG 0.618701 1_3:+43773085 None:intergenic
GTTGTGATTCAGGGAAGAAG+CGG 0.620242 1_3:-43774274 Msa0119640:intron
TATTATCAAAAGATATGATG+AGG 0.626070 1_3:-43774229 Msa0119640:CDS
AGAGCCGAGCTCTACTTCAA+AGG 0.627631 1_3:-43773492 Msa0119640:CDS
GGGGTGCAATTAGAAGAAGT+AGG 0.628823 1_3:+43774512 None:intergenic
AAGCAGCATCCTGAGTGTAG+AGG 0.635067 1_3:-43773536 Msa0119640:CDS
TAGAGGAGACCGATGGAGTG+TGG 0.635161 1_3:+43774838 None:intergenic
TATACCATCGACAGTCTCAA+GGG 0.636705 1_3:+43774203 None:intergenic
AATATTGTTCATGGTAGTAG+CGG 0.636935 1_3:-43772715 Msa0119640:CDS
CAATGACTCTGGAGAAACTG+TGG 0.637102 1_3:+43772301 None:intergenic
GCCGGACTAGACGTAGTGGC+CGG 0.638720 1_3:-43773141 Msa0119640:CDS
AGAGATAATTACACAAAACA+AGG 0.647978 1_3:+43771673 None:intergenic
GGCGATGGTTGAAACAGAAG+CGG 0.648573 1_3:-43772423 Msa0119640:CDS
GAGATTACAGAAATTCAGGA+AGG 0.670364 1_3:-43771812 Msa0119640:three_prime_UTR
TTGAAAGGACCTCTACACTC+AGG 0.674727 1_3:+43773527 None:intergenic
TGGCTCGTTAAATCATCCCA+AGG 0.675240 1_3:-43774419 Msa0119640:CDS
ACTGGAAAGTCTATCGACAC+CGG 0.699764 1_3:-43772560 Msa0119640:CDS
TGCCGGAGATGGCTAAACAG+TGG 0.700088 1_3:+43774390 None:intergenic
AGACTTTACATTCATCTCCG+GGG 0.702502 1_3:+43773654 None:intergenic
TTGCGCCAAAACTCTAAGCG+AGG 0.703796 1_3:+43772043 None:intergenic
TGACTTAAATCCCTGCCTCG+AGG 0.703921 1_3:+43772353 None:intergenic
AAAGGGGTTCTATACAATGG+CGG 0.709873 1_3:+43774806 None:intergenic
AGTGGCCGGACTAGACGTAG+TGG 0.713698 1_3:-43773145 Msa0119640:CDS
GACCACGAGAGATCGCAACA+AGG 0.726617 1_3:-43772785 Msa0119640:CDS
ATAATGTTATACCCTACCAG+AGG 0.755761 1_3:-43772669 Msa0119640:CDS
AGGAGACCGATGGAGTGTGG+TGG 0.759437 1_3:+43774841 None:intergenic
TCTTCTGTAAAATCTCCTCG+AGG 0.762392 1_3:-43772368 Msa0119640:three_prime_UTR
TCTGATTAGAACTTTCACTG+CGG 0.782209 1_3:-43771706 Msa0119640:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTGTTTTTTGAA+TGG + chr1_3:43771667-43771686 None:intergenic 10.0%
!!! ATTTTCAAGAGTTTTTTATT+TGG - chr1_3:43772648-43772667 Msa0119640:CDS 15.0%
!!! GTTTTATTAATTTTTATTGC+AGG - chr1_3:43772889-43772908 Msa0119640:intron 15.0%
!!! TTTTTGAATGGAAAATAGTT+GGG + chr1_3:43771655-43771674 None:intergenic 20.0%
!!! TTTTTTGAATGGAAAATAGT+TGG + chr1_3:43771656-43771675 None:intergenic 20.0%
!! AGTTTATGTAACAATGTAAA+GGG + chr1_3:43771849-43771868 None:intergenic 20.0%
!!! ATTCCTGCAATTTTTTTTAA+CGG - chr1_3:43771871-43771890 Msa0119640:intron 20.0%
!!! TGTAATAACTTTGATTTTGA+GGG + chr1_3:43772333-43772352 None:intergenic 20.0%
!!! TCATCATATCTTTTGATAAT+AGG + chr1_3:43772407-43772426 None:intergenic 20.0%
!! TATTATCAAAAGATATGATG+AGG - chr1_3:43772406-43772425 Msa0119640:CDS 20.0%
!!! TTGTTTTTTCTTCTATTTCA+TGG - chr1_3:43772621-43772640 Msa0119640:CDS 20.0%
!! TTTAGAGAAGAATCAAAAAT+CGG - chr1_3:43772708-43772727 Msa0119640:CDS 20.0%
!!! TATCAAGAAATTTTCTCTAA+CGG - chr1_3:43772774-43772793 Msa0119640:CDS 20.0%
!! AAGGATGTTATAAGAAAAAA+GGG - chr1_3:43774191-43774210 Msa0119640:intron 20.0%
!!! TGTTTAATCATTTTTCTCTT+AGG + chr1_3:43774243-43774262 None:intergenic 20.0%
!!! ATTGTTAGCATTTTTACATA+TGG - chr1_3:43774500-43774519 Msa0119640:CDS 20.0%
!! TCAAACACCTATTTATAATA+TGG - chr1_3:43774615-43774634 Msa0119640:intron 20.0%
!! TCACATACCATATTATAAAT+AGG + chr1_3:43774625-43774644 None:intergenic 20.0%
!!! ATATATTTTCTCTTTGAGAT+GGG - chr1_3:43774722-43774741 Msa0119640:intron 20.0%
! GTTTATGTAACAATGTAAAG+GGG + chr1_3:43771848-43771867 None:intergenic 25.0%
! GAGTTTATGTAACAATGTAA+AGG + chr1_3:43771850-43771869 None:intergenic 25.0%
! TAACATGAAATTCATTCTCA+AGG + chr1_3:43771950-43771969 None:intergenic 25.0%
! AATTCAACAAAGATCAACAT+TGG - chr1_3:43771977-43771996 Msa0119640:intron 25.0%
! GAAATGAAATACTTACTTTG+TGG + chr1_3:43772277-43772296 None:intergenic 25.0%
!!! GTGTAATAACTTTGATTTTG+AGG + chr1_3:43772334-43772353 None:intergenic 25.0%
! ACATTTAATGTTGTGATTCA+GGG - chr1_3:43772352-43772371 Msa0119640:three_prime_UTR 25.0%
!!! ATATCTTTTGATAATAGGAG+CGG + chr1_3:43772402-43772421 None:intergenic 25.0%
!! TTCATAACTGTCAATGTTTT+TGG - chr1_3:43772515-43772534 Msa0119640:CDS 25.0%
! AAAAAACAAAAATCCATCAG+GGG + chr1_3:43772610-43772629 None:intergenic 25.0%
! GAAAAAACAAAAATCCATCA+GGG + chr1_3:43772611-43772630 None:intergenic 25.0%
! AGAAAAAACAAAAATCCATC+AGG + chr1_3:43772612-43772631 None:intergenic 25.0%
!!! AACGGTAAATATTTTGATGA+TGG - chr1_3:43772792-43772811 Msa0119640:CDS 25.0%
!! ATTAATTTTTATTGCAGGTG+TGG - chr1_3:43772894-43772913 Msa0119640:intron 25.0%
! TAAAGTCTTAAAGATGAGTA+GGG - chr1_3:43772996-43773015 Msa0119640:CDS 25.0%
! TTACCATCAAATGATATTTC+TGG + chr1_3:43773225-43773244 None:intergenic 25.0%
! TATGTCAATTAAGATGAGTA+AGG - chr1_3:43773450-43773469 Msa0119640:CDS 25.0%
!!! AGATTTGTTGATACATTATC+AGG + chr1_3:43773643-43773662 None:intergenic 25.0%
!! CTTCTAGAAATATTATCTGA+AGG - chr1_3:43773661-43773680 Msa0119640:CDS 25.0%
! TATTAAGAAATAGAGACTGT+AGG + chr1_3:43773769-43773788 None:intergenic 25.0%
!!! TGAAAAAGTTTTGGAATTTC+TGG + chr1_3:43774161-43774180 None:intergenic 25.0%
!! AGTTTTTGCTGAAAAAGTTT+TGG + chr1_3:43774170-43774189 None:intergenic 25.0%
! GAAGGATGTTATAAGAAAAA+AGG - chr1_3:43774190-43774209 Msa0119640:intron 25.0%
! ATGAAGTAACTCATCTTATT+TGG - chr1_3:43774401-43774420 Msa0119640:CDS 25.0%
! AAAATGCTAACAATATCACT+GGG + chr1_3:43774494-43774513 None:intergenic 25.0%
! AAAAATGCTAACAATATCAC+TGG + chr1_3:43774495-43774514 None:intergenic 25.0%
! AAAGAATAGAGTGAAGTAAA+TGG + chr1_3:43774538-43774557 None:intergenic 25.0%
! TTCACTCTATTCTTTATGTT+TGG - chr1_3:43774543-43774562 Msa0119640:CDS 25.0%
! TCACTCTATTCTTTATGTTT+GGG - chr1_3:43774544-43774563 Msa0119640:CDS 25.0%
!!! TTATGTTTGGGTTATTTTGT+AGG - chr1_3:43774556-43774575 Msa0119640:CDS 25.0%
! AATATATCCTAGACATAATG+TGG + chr1_3:43774709-43774728 None:intergenic 25.0%
!!! GATATATTTTCTCTTTGAGA+TGG - chr1_3:43774721-43774740 Msa0119640:intron 25.0%
! AGAGATAATTACACAAAACA+AGG + chr1_3:43774965-43774984 None:intergenic 25.0%
!! AGAATAATTCAAGTTAGTTG+GGG + chr1_3:43775005-43775024 None:intergenic 25.0%
!! GAGAATAATTCAAGTTAGTT+GGG + chr1_3:43775006-43775025 None:intergenic 25.0%
!! TGAGAATAATTCAAGTTAGT+TGG + chr1_3:43775007-43775026 None:intergenic 25.0%
AAAATAGTTGGGTTATCGTT+GGG + chr1_3:43771644-43771663 None:intergenic 30.0%
AAGCCGTTAAAAAAAATTGC+AGG + chr1_3:43771877-43771896 None:intergenic 30.0%
ACAAAGATCAACATTGGTAA+AGG - chr1_3:43771983-43772002 Msa0119640:intron 30.0%
AAGAAGAAGAAGAAGTTGTA+GGG + chr1_3:43772146-43772165 None:intergenic 30.0%
GAACGGTTACATTATACTAT+TGG - chr1_3:43772193-43772212 Msa0119640:intron 30.0%
TGAATCAAGCATAAACTGAA+GGG + chr1_3:43772305-43772324 None:intergenic 30.0%
TTGAATCAAGCATAAACTGA+AGG + chr1_3:43772306-43772325 None:intergenic 30.0%
CACATTTAATGTTGTGATTC+AGG - chr1_3:43772351-43772370 Msa0119640:three_prime_UTR 30.0%
!! ATCAAAAATCGGTACTGATT+CGG - chr1_3:43772719-43772738 Msa0119640:CDS 30.0%
TAAGACTTTACATTCATCTC+CGG + chr1_3:43772986-43773005 None:intergenic 30.0%
GTAAAGTCTTAAAGATGAGT+AGG - chr1_3:43772995-43773014 Msa0119640:CDS 30.0%
GACTTTAATATTATGCAACC+TGG + chr1_3:43773061-43773080 None:intergenic 30.0%
CTTCCAGAAATATCATTTGA+TGG - chr1_3:43773219-43773238 Msa0119640:intron 30.0%
GGAAAATTATGTTCCTACTT+TGG - chr1_3:43773369-43773388 Msa0119640:intron 30.0%
ACATATCTTGTTCAACTTCA+AGG + chr1_3:43773435-43773454 None:intergenic 30.0%
AATATTGTTCATGGTAGTAG+CGG - chr1_3:43773920-43773939 Msa0119640:CDS 30.0%
!!! ACTTTTTCAGCAAAAACTGA+AGG - chr1_3:43774172-43774191 Msa0119640:intron 30.0%
AGTCTCAAAATATTCAGATC+TGG - chr1_3:43774357-43774376 Msa0119640:intron 30.0%
GGATTTCTAATAATGGCAAT+GGG + chr1_3:43774680-43774699 None:intergenic 30.0%
AGGATTTCTAATAATGGCAA+TGG + chr1_3:43774681-43774700 None:intergenic 30.0%
! CTTTTTACATTTTACCATCC+AGG - chr1_3:43774795-43774814 Msa0119640:intron 30.0%
! TCTTTGATATCACCTTTTAG+AGG - chr1_3:43774850-43774869 Msa0119640:CDS 30.0%
GAAAATAGTTGGGTTATCGT+TGG + chr1_3:43771645-43771664 None:intergenic 35.0%
TGAGAGAAGAGAACATAGTT+GGG + chr1_3:43771720-43771739 None:intergenic 35.0%
TTGAGAGAAGAGAACATAGT+TGG + chr1_3:43771721-43771740 None:intergenic 35.0%
TGTAAAGGGGTTCTATACAA+TGG + chr1_3:43771835-43771854 None:intergenic 35.0%
AAGATCAACATTGGTAAAGG+TGG - chr1_3:43771986-43772005 Msa0119640:intron 35.0%
! TCGCGAAAGTATAATCAACA+AGG + chr1_3:43772034-43772053 None:intergenic 35.0%
TATCTCTCTTCAACCAAACA+TGG - chr1_3:43772089-43772108 Msa0119640:intron 35.0%
AGAAGAAGAAGAAGTTGTAG+GGG + chr1_3:43772145-43772164 None:intergenic 35.0%
GAAGAAGAAGAAGAAGTTGT+AGG + chr1_3:43772147-43772166 None:intergenic 35.0%
AGTATAATGTAACCGTTCGT+TGG + chr1_3:43772191-43772210 None:intergenic 35.0%
CGGTTACATTATACTATTGG+TGG - chr1_3:43772196-43772215 Msa0119640:intron 35.0%
! TAAACAGTGGTTGTTTCCTT+GGG + chr1_3:43772235-43772254 None:intergenic 35.0%
CAGTTATGAATACAAACCTG+AGG + chr1_3:43772505-43772524 None:intergenic 35.0%
!! TATTTGGCTTTCCTGAAAAC+TGG - chr1_3:43772664-43772683 Msa0119640:CDS 35.0%
!! ATTTGGCTTTCCTGAAAACT+GGG - chr1_3:43772665-43772684 Msa0119640:CDS 35.0%
!! TCAAAAATCGGTACTGATTC+GGG - chr1_3:43772720-43772739 Msa0119640:CDS 35.0%
AAGACTTTACATTCATCTCC+GGG + chr1_3:43772985-43773004 None:intergenic 35.0%
GTAAAAATAGACGTAGTACC+AGG - chr1_3:43773040-43773059 Msa0119640:CDS 35.0%
GATATAGAGACTGTAGGTAT+AGG + chr1_3:43773321-43773340 None:intergenic 35.0%
TACCTACAGTCTCTATATCT+TGG - chr1_3:43773322-43773341 Msa0119640:intron 35.0%
TACCAAGATATAGAGACTGT+AGG + chr1_3:43773327-43773346 None:intergenic 35.0%
TTTAATTGTTGTCGCAGCTT+TGG - chr1_3:43773348-43773367 Msa0119640:intron 35.0%
TGTTCCTACTTTGGTATAGT+CGG - chr1_3:43773378-43773397 Msa0119640:intron 35.0%
! TTTTCCGACTATACCAAAGT+AGG + chr1_3:43773385-43773404 None:intergenic 35.0%
TACTTTGGTATAGTCGGAAA+AGG - chr1_3:43773384-43773403 Msa0119640:intron 35.0%
AGTAAGGTCAATGATGTTCA+TGG - chr1_3:43773466-43773485 Msa0119640:CDS 35.0%
! GAAGTCTTTTCCTACTTCTT+TGG - chr1_3:43773814-43773833 Msa0119640:intron 35.0%
ACATGTCAATTAAGACGTGT+AGG - chr1_3:43773894-43773913 Msa0119640:CDS 35.0%
CATGTCAATTAAGACGTGTA+GGG - chr1_3:43773895-43773914 Msa0119640:CDS 35.0%
TGTAGGGTCAATATTGTTCA+TGG - chr1_3:43773911-43773930 Msa0119640:CDS 35.0%
ATATTGTTCATGGTAGTAGC+GGG - chr1_3:43773921-43773940 Msa0119640:CDS 35.0%
AGGGTATAACATTATGCATC+CGG + chr1_3:43773961-43773980 None:intergenic 35.0%
ATAATGTTATACCCTACCAG+AGG - chr1_3:43773966-43773985 Msa0119640:CDS 35.0%
GTTATAAGAAAAAAGGGCGA+TGG - chr1_3:43774197-43774216 Msa0119640:intron 35.0%
GATTTAAGTCACTCGAACAA+GGG - chr1_3:43774294-43774313 Msa0119640:intron 35.0%
!!! ATTTTGAGACTCAATGACTC+TGG + chr1_3:43774348-43774367 None:intergenic 35.0%
!! GTTTGGGTTATTTTGTAGGA+AGG - chr1_3:43774560-43774579 Msa0119640:CDS 35.0%
GTGTGCAGGATTTCTAATAA+TGG + chr1_3:43774687-43774706 None:intergenic 35.0%
!!! TTTTCTCTTTGAGATGGGTA+AGG - chr1_3:43774727-43774746 Msa0119640:intron 35.0%
CCTGAATTTCTGTAATCTCA+CGG + chr1_3:43774822-43774841 None:intergenic 35.0%
GAGATTACAGAAATTCAGGA+AGG - chr1_3:43774823-43774842 Msa0119640:CDS 35.0%
TCTGATTAGAACTTTCACTG+CGG - chr1_3:43774929-43774948 Msa0119640:exon 35.0%
ATTCGTATGGGTTTCGACTT+TGG + chr1_3:43771747-43771766 None:intergenic 40.0%
!! AATGGCGGATAGAGAAATAG+AGG + chr1_3:43771817-43771836 None:intergenic 40.0%
AAAGGGGTTCTATACAATGG+CGG + chr1_3:43771832-43771851 None:intergenic 40.0%
! CGTTGTTGTTGTTGTGAAAC+AGG - chr1_3:43771906-43771925 Msa0119640:intron 40.0%
AGAGAGATAAGTGAGATGAG+AGG + chr1_3:43772078-43772097 None:intergenic 40.0%
TTCATCTTGCTTCCAACGAA+CGG - chr1_3:43772176-43772195 Msa0119640:intron 40.0%
! CTAAACAGTGGTTGTTTCCT+TGG + chr1_3:43772236-43772255 None:intergenic 40.0%
TTACTTTGTGGAAGAGATGC+CGG + chr1_3:43772265-43772284 None:intergenic 40.0%
TATACCATCGACAGTCTCAA+GGG + chr1_3:43772435-43772454 None:intergenic 40.0%
ATATACCATCGACAGTCTCA+AGG + chr1_3:43772436-43772455 None:intergenic 40.0%
ATTAGATAAACAACGCACGC+TGG - chr1_3:43772465-43772484 Msa0119640:CDS 40.0%
! GGATAATGCTTTTACTCCTC+AGG - chr1_3:43772486-43772505 Msa0119640:CDS 40.0%
! TCTAAAGCAAGCTAGAACAG+AGG + chr1_3:43772694-43772713 None:intergenic 40.0%
AAAGTCCATTCCTACTTCGT+CGG - chr1_3:43772918-43772937 Msa0119640:intron 40.0%
AAATACCGACGAAGTAGGAA+TGG + chr1_3:43772926-43772945 None:intergenic 40.0%
TGGAGTCTTGCAATTCTCTA+GGG + chr1_3:43772959-43772978 None:intergenic 40.0%
ATGGAGTCTTGCAATTCTCT+AGG + chr1_3:43772960-43772979 None:intergenic 40.0%
AGACTTTACATTCATCTCCG+GGG + chr1_3:43772984-43773003 None:intergenic 40.0%
GGCCATGGAAAATCATGATT+CGG - chr1_3:43773164-43773183 Msa0119640:CDS 40.0%
! GTCCGAATCATGATTTTCCA+TGG + chr1_3:43773169-43773188 None:intergenic 40.0%
!! AGACTTGCTGGTACATTATC+CGG + chr1_3:43773201-43773220 None:intergenic 40.0%
!! GATATTTCTGGAAGACTTGC+TGG + chr1_3:43773213-43773232 None:intergenic 40.0%
GTCAATGATGTTCATGGTAG+TGG - chr1_3:43773472-43773491 Msa0119640:CDS 40.0%
AGTCCTTAGCATTATGCAAC+CGG + chr1_3:43773516-43773535 None:intergenic 40.0%
TCTTTCTCTGGATTCTTGAG+AGG + chr1_3:43773568-43773587 None:intergenic 40.0%
ATGATCTTCCACAACCTTCA+AGG + chr1_3:43773602-43773621 None:intergenic 40.0%
GGTTGTGGAAGATCATGATT+TGG - chr1_3:43773606-43773625 Msa0119640:CDS 40.0%
TTCAAATGTTGTCACAGCTG+TGG - chr1_3:43773790-43773809 Msa0119640:intron 40.0%
TCCTACTTCTTTGGTATCAC+CGG - chr1_3:43773823-43773842 Msa0119640:intron 40.0%
AGGCACTTCTTGAAGATGAA+CGG - chr1_3:43773870-43773889 Msa0119640:CDS 40.0%
GGGTATAACATTATGCATCC+GGG + chr1_3:43773960-43773979 None:intergenic 40.0%
TCTTTATCTGGATGTGTTGC+AGG + chr1_3:43774013-43774032 None:intergenic 40.0%
!! ACACCGGTTCAGTCAAAAAA+GGG - chr1_3:43774091-43774110 Msa0119640:intron 40.0%
!!! CTTCCCTTTTTTGACTGAAC+CGG + chr1_3:43774097-43774116 None:intergenic 40.0%
GAAGAGTGAACACAATGTCT+GGG - chr1_3:43774113-43774132 Msa0119640:intron 40.0%
TCTTCTGTAAAATCTCCTCG+AGG - chr1_3:43774267-43774286 Msa0119640:intron 40.0%
GGATTTAAGTCACTCGAACA+AGG - chr1_3:43774293-43774312 Msa0119640:intron 40.0%
!! TGGGTTATTTTGTAGGAAGG+TGG - chr1_3:43774563-43774582 Msa0119640:CDS 40.0%
! TTCTACCTCGCTTAGAGTTT+TGG - chr1_3:43774587-43774606 Msa0119640:intron 40.0%
AGATGGGTAAGGCAAACAAT+GGG - chr1_3:43774738-43774757 Msa0119640:intron 40.0%
CCGTGAGATTACAGAAATTC+AGG - chr1_3:43774819-43774838 Msa0119640:intron 40.0%
TATGACGAAGAGCCTCTAAA+AGG + chr1_3:43774865-43774884 None:intergenic 40.0%
!! TTTTAGAGGCTCTTCGTCAT+AGG - chr1_3:43774864-43774883 Msa0119640:CDS 40.0%
TTTAGAGGCTCTTCGTCATA+GGG - chr1_3:43774865-43774884 Msa0119640:CDS 40.0%
AGTTGGGGCAGAGATAATTA+CGG + chr1_3:43774990-43775009 None:intergenic 40.0%
AGAGAAATAGAGGAGACCGA+TGG + chr1_3:43771807-43771826 None:intergenic 45.0%
GGGGTGCAATTAGAAGAAGT+AGG + chr1_3:43772126-43772145 None:intergenic 45.0%
TGGCTCGTTAAATCATCCCA+AGG - chr1_3:43772216-43772235 Msa0119640:intron 45.0%
AACCACTGTTTAGCCATCTC+CGG - chr1_3:43772243-43772262 Msa0119640:intron 45.0%
GTTGTGATTCAGGGAAGAAG+CGG - chr1_3:43772361-43772380 Msa0119640:three_prime_UTR 45.0%
AGTTTCATTGCTACCCCTGA+TGG - chr1_3:43772594-43772613 Msa0119640:CDS 45.0%
! ACAGAGGTTTCCCAGTTTTC+AGG + chr1_3:43772678-43772697 None:intergenic 45.0%
!! TGATTCGGGCAATGCTGTTT+TGG - chr1_3:43772734-43772753 Msa0119640:CDS 45.0%
TCAGGAAATACCGACGAAGT+AGG + chr1_3:43772931-43772950 None:intergenic 45.0%
TTCGTCGGTATTTCCTGAAG+AGG - chr1_3:43772933-43772952 Msa0119640:intron 45.0%
AATTGCAAGACTCCATTCCC+CGG - chr1_3:43772964-43772983 Msa0119640:intron 45.0%
TTACATTCATCTCCGGGGAA+TGG + chr1_3:43772979-43772998 None:intergenic 45.0%
!! AGTAGGGTTGATGTTGCTTG+TGG - chr1_3:43773012-43773031 Msa0119640:CDS 45.0%
! GTTGATGTTGCTTGTGGTAG+TGG - chr1_3:43773018-43773037 Msa0119640:CDS 45.0%
TTGAAAGGACCTCTACACTC+AGG + chr1_3:43773111-43773130 None:intergenic 45.0%
TCTCCATCTGGATGCTTGAA+AGG + chr1_3:43773126-43773145 None:intergenic 45.0%
!! ATGGCCTTTGAAGTAGAGCT+CGG + chr1_3:43773150-43773169 None:intergenic 45.0%
! TGATTCGGACACTGTTGTTC+CGG - chr1_3:43773179-43773198 Msa0119640:CDS 45.0%
CGACTTATTGCAATCTCTCG+TGG + chr1_3:43773410-43773429 None:intergenic 45.0%
!! ATGATGTTCATGGTAGTGGC+CGG - chr1_3:43773476-43773495 Msa0119640:CDS 45.0%
TCCGGTGATACCAAAGAAGT+AGG + chr1_3:43773827-43773846 None:intergenic 45.0%
GGCACTTCTTGAAGATGAAC+GGG - chr1_3:43773871-43773890 Msa0119640:CDS 45.0%
! GCAGAGATCTGGTCTTTATC+TGG + chr1_3:43774025-43774044 None:intergenic 45.0%
ACTCAATTCCAAGGCTGCTA+AGG + chr1_3:43774047-43774066 None:intergenic 45.0%
TCCTCCATCACTCAATTCCA+AGG + chr1_3:43774056-43774075 None:intergenic 45.0%
ACTGGAAAGTCTATCGACAC+CGG - chr1_3:43774075-43774094 Msa0119640:intron 45.0%
!! GACACCGGTTCAGTCAAAAA+AGG - chr1_3:43774090-43774109 Msa0119640:intron 45.0%
GGAAGAGTGAACACAATGTC+TGG - chr1_3:43774112-43774131 Msa0119640:intron 45.0%
TGTAAAATCTCCTCGAGGCA+GGG - chr1_3:43774272-43774291 Msa0119640:intron 45.0%
! CAATGACTCTGGAGAAACTG+TGG + chr1_3:43774337-43774356 None:intergenic 45.0%
! TATCACTGGGTGAGAAGTGT+TGG + chr1_3:43774481-43774500 None:intergenic 45.0%
CTAGACATAATGTGGTGTGC+AGG + chr1_3:43774701-43774720 None:intergenic 45.0%
CTGCACACCACATTATGTCT+AGG - chr1_3:43774699-43774718 Msa0119640:intron 45.0%
GAGATGGGTAAGGCAAACAA+TGG - chr1_3:43774737-43774756 Msa0119640:intron 45.0%
TTTCTGTAATCTCACGGTCC+TGG + chr1_3:43774816-43774835 None:intergenic 45.0%
GTTGGGGCAGAGATAATTAC+GGG + chr1_3:43774989-43775008 None:intergenic 45.0%
CAGATGGTGCGGATTCGTAT+GGG + chr1_3:43771759-43771778 None:intergenic 50.0%
AAAGGTGGTTGTGTTGCGAC+TGG - chr1_3:43772001-43772020 Msa0119640:intron 50.0%
AAGGTGGTTGTGTTGCGACT+GGG - chr1_3:43772002-43772021 Msa0119640:intron 50.0%
GGAGTGAAGTCAGCCATGTT+TGG + chr1_3:43772105-43772124 None:intergenic 50.0%
GATTCAGGGAAGAAGCGGTT+CGG - chr1_3:43772366-43772385 Msa0119640:three_prime_UTR 50.0%
ATTCAGGGAAGAAGCGGTTC+GGG - chr1_3:43772367-43772386 Msa0119640:three_prime_UTR 50.0%
GTTTCCCTTGAGACTGTCGA+TGG - chr1_3:43772428-43772447 Msa0119640:CDS 50.0%
!! CAATTCTCTAGGGCCTCTTC+AGG + chr1_3:43772949-43772968 None:intergenic 50.0%
AAGCAGCATCCTGAGTGTAG+AGG - chr1_3:43773099-43773118 Msa0119640:CDS 50.0%
GGTCCTTTCAAGCATCCAGA+TGG - chr1_3:43773120-43773139 Msa0119640:CDS 50.0%
AGAGCCGAGCTCTACTTCAA+AGG - chr1_3:43773143-43773162 Msa0119640:CDS 50.0%
GAGCTCTACTTCAAAGGCCA+TGG - chr1_3:43773149-43773168 Msa0119640:CDS 50.0%
TGGCCGGTTGCATAATGCTA+AGG - chr1_3:43773510-43773529 Msa0119640:CDS 50.0%
GTAGAGCTCTGCTCTTTCTC+TGG + chr1_3:43773580-43773599 None:intergenic 50.0%
AGAGCAGAGCTCTACCTTGA+AGG - chr1_3:43773585-43773604 Msa0119640:CDS 50.0%
GAGCTCTACCTTGAAGGTTG+TGG - chr1_3:43773591-43773610 Msa0119640:CDS 50.0%
!! CGATCTCTCGTGGTCTTATC+CGG + chr1_3:43773845-43773864 None:intergenic 50.0%
GCAGCCTTGGAATTGAGTGA+TGG - chr1_3:43774049-43774068 Msa0119640:intron 50.0%
GCCTTGGAATTGAGTGATGG+AGG - chr1_3:43774052-43774071 Msa0119640:intron 50.0%
! GGAATTGAGTGATGGAGGAC+TGG - chr1_3:43774057-43774076 Msa0119640:intron 50.0%
AGTGAACACAATGTCTGGGC+AGG - chr1_3:43774117-43774136 Msa0119640:intron 50.0%
GGCGATGGTTGAAACAGAAG+CGG - chr1_3:43774212-43774231 Msa0119640:CDS 50.0%
CTGTAAAATCTCCTCGAGGC+AGG - chr1_3:43774271-43774290 Msa0119640:intron 50.0%
TGACTTAAATCCCTGCCTCG+AGG + chr1_3:43774285-43774304 None:intergenic 50.0%
TTGCGCCAAAACTCTAAGCG+AGG + chr1_3:43774595-43774614 None:intergenic 50.0%
TGTAATCTCACGGTCCTGGA+TGG + chr1_3:43774812-43774831 None:intergenic 50.0%
GCAGATGGTGCGGATTCGTA+TGG + chr1_3:43771760-43771779 None:intergenic 55.0%
TACGAATCCGCACCATCTGC+CGG - chr1_3:43771760-43771779 Msa0119640:three_prime_UTR 55.0%
TAGAGGAGACCGATGGAGTG+TGG + chr1_3:43771800-43771819 None:intergenic 55.0%
TGCCGGAGATGGCTAAACAG+TGG + chr1_3:43772248-43772267 None:intergenic 55.0%
TGTGGAAGAGATGCCGGAGA+TGG + chr1_3:43772259-43772278 None:intergenic 55.0%
TTGAGAGGATCTCCAGACGC+AGG + chr1_3:43773553-43773572 None:intergenic 55.0%
GACCACGAGAGATCGCAACA+AGG - chr1_3:43773850-43773869 Msa0119640:intron 55.0%
! TGCCTTGTTGCGATCTCTCG+TGG + chr1_3:43773855-43773874 None:intergenic 55.0%
GCAGGTTGCTTCCTCTGGTA+GGG + chr1_3:43773980-43773999 None:intergenic 55.0%
AGCAGGTTGCTTCCTCTGGT+AGG + chr1_3:43773981-43774000 None:intergenic 55.0%
CAGTAGCAGGTTGCTTCCTC+TGG + chr1_3:43773985-43774004 None:intergenic 55.0%
CAGAGGAAGCAACCTGCTAC+TGG - chr1_3:43773983-43774002 Msa0119640:CDS 55.0%
GTTGCAGGATCTCCAGTAGC+AGG + chr1_3:43773998-43774017 None:intergenic 55.0%
AGGCTGCTAAGGCAGAGATC+TGG + chr1_3:43774036-43774055 None:intergenic 55.0%
GATCTCTGCCTTAGCAGCCT+TGG - chr1_3:43774036-43774055 Msa0119640:intron 55.0%
AGACCGATGGAGTGTGGTGG+TGG + chr1_3:43771794-43771813 None:intergenic 60.0%
AGGAGACCGATGGAGTGTGG+TGG + chr1_3:43771797-43771816 None:intergenic 60.0%
GTAGAGCTCGGCTCTCCATC+TGG + chr1_3:43773138-43773157 None:intergenic 60.0%
! AGTGGCCGGACTAGACGTAG+TGG - chr1_3:43773490-43773509 Msa0119640:CDS 60.0%
ACCGGCCACTACGTCTAGTC+CGG + chr1_3:43773498-43773517 None:intergenic 60.0%
CAGACGCAGGCTGCTTCTTC+TGG + chr1_3:43773540-43773559 None:intergenic 60.0%
CAGAAGAAGCAGCCTGCGTC+TGG - chr1_3:43773538-43773557 Msa0119640:CDS 60.0%
GCGGGAATAGACGTAGTGCC+CGG - chr1_3:43773939-43773958 Msa0119640:CDS 60.0%
GAGGCTCTTCGTCATAGGGC+AGG - chr1_3:43774869-43774888 Msa0119640:CDS 60.0%
GCGCCACCACCACACTCCAT+CGG - chr1_3:43771788-43771807 Msa0119640:three_prime_UTR 65.0%
! GCCGGACTAGACGTAGTGGC+CGG - chr1_3:43773494-43773513 Msa0119640:CDS 65.0%
GCAGCTGCCGGCAGATGGTG+CGG + chr1_3:43771770-43771789 None:intergenic 70.0%
!! TGTGGTGGTGGCGCAGCTGC+CGG + chr1_3:43771782-43771801 None:intergenic 70.0%
GTGGCGCAGCTGCCGGCAGA+TGG + chr1_3:43771775-43771794 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 43771624 43775033 43771624 ID=Msa0119640;Name=Msa0119640
chr1_3 mRNA 43771624 43775033 43771624 ID=Msa0119640-mRNA-1;Parent=Msa0119640;Name=Msa0119640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=100|0.6|0.45|1|0.6|0.45|11|399|534
chr1_3 exon 43771624 43771840 43771624 ID=Msa0119640-mRNA-1:exon:13121;Parent=Msa0119640-mRNA-1
chr1_3 exon 43772021 43772079 43772021 ID=Msa0119640-mRNA-1:exon:13120;Parent=Msa0119640-mRNA-1
chr1_3 exon 43772279 43772850 43772279 ID=Msa0119640-mRNA-1:exon:13119;Parent=Msa0119640-mRNA-1
chr1_3 exon 43772975 43773217 43772975 ID=Msa0119640-mRNA-1:exon:13118;Parent=Msa0119640-mRNA-1
chr1_3 exon 43773417 43773567 43773417 ID=Msa0119640-mRNA-1:exon:13117;Parent=Msa0119640-mRNA-1
chr1_3 exon 43773580 43773746 43773580 ID=Msa0119640-mRNA-1:exon:13116;Parent=Msa0119640-mRNA-1
chr1_3 exon 43773862 43774009 43773862 ID=Msa0119640-mRNA-1:exon:13115;Parent=Msa0119640-mRNA-1
chr1_3 exon 43774150 43774187 43774150 ID=Msa0119640-mRNA-1:exon:13114;Parent=Msa0119640-mRNA-1
chr1_3 exon 43774208 43774284 43774208 ID=Msa0119640-mRNA-1:exon:13113;Parent=Msa0119640-mRNA-1
chr1_3 exon 43774377 43774595 43774377 ID=Msa0119640-mRNA-1:exon:13112;Parent=Msa0119640-mRNA-1
chr1_3 exon 43774821 43775033 43774821 ID=Msa0119640-mRNA-1:exon:13111;Parent=Msa0119640-mRNA-1
chr1_3 five_prime_UTR 43774934 43775033 43774934 ID=Msa0119640-mRNA-1:five_prime_utr;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43774821 43774933 43774821 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43774377 43774595 43774377 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43774208 43774284 43774208 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43774150 43774187 43774150 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43773862 43774009 43773862 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43773580 43773746 43773580 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43773417 43773567 43773417 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43772975 43773217 43772975 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 CDS 43772402 43772850 43772402 ID=Msa0119640-mRNA-1:cds;Parent=Msa0119640-mRNA-1
chr1_3 three_prime_UTR 43772279 43772401 43772279 ID=Msa0119640-mRNA-1:three_prime_utr;Parent=Msa0119640-mRNA-1
chr1_3 three_prime_UTR 43772021 43772079 43772021 ID=Msa0119640-mRNA-1:three_prime_utr;Parent=Msa0119640-mRNA-1
chr1_3 three_prime_UTR 43771624 43771840 43771624 ID=Msa0119640-mRNA-1:three_prime_utr;Parent=Msa0119640-mRNA-1
Gene Sequence

>Msa0119640

ATGTTCTCTTCTCTCAAGTTCCAAAGTCGAAACCCATACGAATCCGCACCATCTGCCGGCAGCTGCGCCACCACCACACTCCATCGGTCTCCTCTATTTCTCTATCCGCCATTTGTGAGAGAGTCTCCTCTCATCTCACTTATCTCTCTTCAACCAAACATGGCTGACTTCACTCCTACTTCTTCTAATTGCACCCCTACAACTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTGCTTCCAACGAACGGTTACATTATACTATTGGTGGCTCGTTAAATCATCCCAAGGAAACAACCACTGTTTAGCCATCTCCGGCATCTCTTCCACAAAGGAAGAAGCGGTTCGGGTATTTAATTCCGCTCCTATTATCAAAAGATATGATGAGGTTTCCCTTGAGACTGTCGATGATAAACAACGCACGCTGGATAATGCTTTTACTCCTCAGATTTTCAAGAGTTTTTTATTTGGCTTTCCTGAAAACTGGGAAACCTCTGTTCTAGCTTGCTTTAGAGAAGAATCAAAAATCGGTACTGATTCGGGCAATGCTGTTTTGGATAATGTATCTGCATTTTATCAAGAAATTTTCTCTAACGGTGTGGAAAAGTCCATTCCTACTTCGTCGGTATTTCCTGAAGAGGCCCTAGAGAATTGCAAGACTCCATTCCCCGGAGATGAATGTAAAGTCTTAAAGATGAGTAGGGTTGATGTTGCTTGTGGTAGTGGTAAAAATAGACGTAGTACCAGGTTGCATAATATTAAAAAGAAGCAGAAGCAGCATCCTGAGTGTAGAGGTCCTTTCAAGCATCCAGATGGAGAGCCGAGCTCTACTTCAAAGGCCATGGAAAATCATGATTCGGACACTGTTGTTCCGGATAATGTACCAGCAAGTCTTCCAGAAATATCATTTGATGTTGAACAAGATATGTCAATTAAGATGAGTAAGGTCAATGATGTTCATGGTAGTGGCCGGACTAGACGTAGTGGCCGGTTGCATAATGCTAAGGACTGCCAGAAGAAGCAGCCTGCGTCTGGAGATCCTCTCAAGAATCCAGAGAAAGAGCAGAGCTCTACCTTGAAGGTTGTGGAAGATCATGATTTGGATACTGCTGTTCCTGATAATGTATCAACAAATCTTCTAGAAATATTATCTGAAGCTGTGGAGAAGTCTTTTCCTACTTCTTTGGTATCACCGGATAAGACCACGAGAGATCGCAACAAGGCACTTCTTGAAGATGAACGGGACATGTCAATTAAGACGTGTAGGGTCAATATTGTTCATGGTAGTAGCGGGAATAGACGTAGTGCCCGGATGCATAATGTTATACCCTACCAGAGGAAGCAACCTGCTACTGGAGATCCTGCAACACATCCAGATAAAGACCAGATCTCTGCCTTAGCAGCCTTGGAATTGAGTGATGGAGGACTGGAAAGTCTATCGACACCGGTTCAGTCAAAAAAGGGAAGAGTGAACACAATGTCTGGGCAGGTCACTAATAAATTGAGTTCCAGAAATTCCAAAACTTTTTCAGCAAAAACTGAAGGATGTTATAAGAAAAAAGGGCGATGGTTGAAACAGAAGCGGTCACACCTAAGAGAAAAATGA

Protein sequence

>Msa0119640

MFSSLKFQSRNPYESAPSAGSCATTTLHRSPLFLYPPFVRESPLISLISLQPNMADFTPTSSNCTPTTSSSSSSSSSSCFQRTVTLYYWWLVKSSQGNNHCLAISGISSTKEEAVRVFNSAPIIKRYDEVSLETVDDKQRTLDNAFTPQIFKSFLFGFPENWETSVLACFREESKIGTDSGNAVLDNVSAFYQEIFSNGVEKSIPTSSVFPEEALENCKTPFPGDECKVLKMSRVDVACGSGKNRRSTRLHNIKKKQKQHPECRGPFKHPDGEPSSTSKAMENHDSDTVVPDNVPASLPEISFDVEQDMSIKMSKVNDVHGSGRTRRSGRLHNAKDCQKKQPASGDPLKNPEKEQSSTLKVVEDHDLDTAVPDNVSTNLLEILSEAVEKSFPTSLVSPDKTTRDRNKALLEDERDMSIKTCRVNIVHGSSGNRRSARMHNVIPYQRKQPATGDPATHPDKDQISALAALELSDGGLESLSTPVQSKKGRVNTMSGQVTNKLSSRNSKTFSAKTEGCYKKKGRWLKQKRSHLREK*