AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120560 MtrunA17_Chr2g0311101 81.459 329 27 10 3 321 6 310 2.14e-167 468
Msa0120560 MtrunA17_Chr1g0179061 93.802 242 12 2 10 250 1 240 3.38e-166 462
Msa0120560 MtrunA17_Chr8g0384141 58.491 53 22 0 191 243 125 177 3.73e-14 71.2
Msa0120560 MtrunA17_Chr3g0134001 58.491 53 22 0 191 243 182 234 2.12e-13 69.3
Msa0120560 MtrunA17_Chr7g0243041 43.103 58 33 0 191 248 37 94 4.31e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120560 AT1G30670.1 40.936 171 98 2 144 314 95 262 2.87e-28 110
Msa0120560 AT2G34820.1 41.784 213 116 4 106 314 81 289 4.31e-27 108
Msa0120560 AT3G21330.1 62.264 53 20 0 191 243 280 332 2.68e-14 73.2
Msa0120560 AT5G01305.1 50.000 58 29 0 191 248 48 105 2.19e-13 67.8
Msa0120560 AT4G00120.1 52.830 53 25 0 191 243 123 175 1.09e-12 66.2

Find 55 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGGAATGCTTCAACTTA+TGG 0.195386 1_3:-45495596 Msa0120560:CDS
ATCTCTGCTGTGTTCATCTT+TGG 0.238213 1_3:+45495661 None:intergenic
TTGGTGAAATCTTCCTCATT+TGG 0.290806 1_3:+45495982 None:intergenic
ATCAAAACCTACCATTCTTA+AGG 0.300143 1_3:-45494445 Msa0120560:CDS
TCAAATAGTTAGAGGGAAAA+TGG 0.318116 1_3:+45496157 None:intergenic
AAATAAAACTATTCTTGCTT+TGG 0.325467 1_3:+45494384 None:intergenic
TGGTGAAATCTTCCTCATTT+GGG 0.332786 1_3:+45495983 None:intergenic
GAAGCAAAAGGGTTAGGGTT+AGG 0.345524 1_3:+45495847 None:intergenic
AAGCAAAAGGGTTAGGGTTA+GGG 0.345934 1_3:+45495848 None:intergenic
TCTCCTCGTAGCATAGCTTT+TGG 0.368098 1_3:+45495938 None:intergenic
AGTTGATCTTGACAAGGGTT+AGG 0.369040 1_3:+45496066 None:intergenic
TCAAAGGAAGCAAAAGGGTT+AGG 0.369513 1_3:+45495841 None:intergenic
AGTAGTGATTTCTAAGTTGT+TGG 0.372241 1_3:+45496221 None:intergenic
GTAGTTTGAATAGGTTGATA+AGG 0.378786 1_3:+45496243 None:intergenic
TACAGTTTCTCTTGAACAAA+TGG 0.383908 1_3:+45494534 None:intergenic
AAGGGTCTGAAACAGCTTGC+TGG 0.388228 1_3:-45494426 Msa0120560:CDS
AATGTGGTGACAAACTCTTT+TGG 0.390869 1_3:+45494489 None:intergenic
GTGCTTGGGAAGTTGGTTCC+TGG 0.397371 1_3:-45495688 Msa0120560:CDS
AAGTTGTTGGTAGTTTGAAT+AGG 0.402079 1_3:+45496234 None:intergenic
GACACAAGTGCTTGGGAAGT+TGG 0.424372 1_3:-45495695 Msa0120560:CDS
TTGACTATTTCAGGAAGAAA+AGG 0.427645 1_3:-45494598 Msa0120560:intron
TAGTTTGAATAGGTTGATAA+GGG 0.429054 1_3:+45496244 None:intergenic
AGTTTCATTCAAATAGTTAG+AGG 0.435549 1_3:+45496149 None:intergenic
GTTGATCTTGACAAGGGTTA+GGG 0.453473 1_3:+45496067 None:intergenic
TCAAAACCTACCATTCTTAA+GGG 0.456430 1_3:-45494444 Msa0120560:CDS
CAAAGGAAGCAAAAGGGTTA+GGG 0.461232 1_3:+45495842 None:intergenic
AGAGTATCGCGGCGAGAGAA+AGG 0.466876 1_3:-45495738 Msa0120560:CDS
TCTACCTCAAAGGAAGCAAA+AGG 0.468900 1_3:+45495835 None:intergenic
TTGTGTAGATCTTCACTTGG+AGG 0.473071 1_3:+45494570 None:intergenic
TGTAGATCTTCACTTGGAGG+AGG 0.494574 1_3:+45494573 None:intergenic
GTGTTCATCTTTGGTCCACC+AGG 0.499817 1_3:+45495670 None:intergenic
ACTGAGAAGACACAAGTGCT+TGG 0.510386 1_3:-45495703 Msa0120560:CDS
CTGAGAAGACACAAGTGCTT+GGG 0.515747 1_3:-45495702 Msa0120560:CDS
CTGTTTCAGACCCTTAAGAA+TGG 0.516519 1_3:+45494434 None:intergenic
AGGGTCTGAAACAGCTTGCT+GGG 0.522554 1_3:-45494425 Msa0120560:CDS
GTTCAATGTGAGAAGAAAGT+TGG 0.527953 1_3:-45495781 Msa0120560:CDS
GTTTCATTCAAATAGTTAGA+GGG 0.549802 1_3:+45496150 None:intergenic
GTGAGAAGAAAGTTGGTGAA+AGG 0.566992 1_3:-45495774 Msa0120560:CDS
AAGTTTCTTCAAGCTCAAGT+TGG 0.567049 1_3:-45495613 Msa0120560:CDS
AGCAAAGGGTTCTACCTCAA+AGG 0.572532 1_3:+45495825 None:intergenic
AGTTTGTGTAGATCTTCACT+TGG 0.582386 1_3:+45494567 None:intergenic
TTCAGACCCTTAAGAATGGT+AGG 0.583734 1_3:+45494438 None:intergenic
GAGTTCAAAAGCTCTTGTTG+TGG 0.586358 1_3:+45495904 None:intergenic
TCGCGGCGAGAGAAAGGAGA+AGG 0.587504 1_3:-45495732 Msa0120560:CDS
AATAAGAAAGAGAAATGCAT+AGG 0.587692 1_3:-45496717 None:intergenic
ACTTATGGAAACATTTAACA+AGG 0.595324 1_3:-45495581 Msa0120560:intron
CTTGGGAAGTTGGTTCCTGG+TGG 0.597463 1_3:-45495685 Msa0120560:CDS
CTACCTCAAAGGAAGCAAAA+GGG 0.620756 1_3:+45495836 None:intergenic
AATAGTTAGAGGGAAAATGG+TGG 0.625963 1_3:+45496160 None:intergenic
ACAAGTAGTTGATCTTGACA+AGG 0.633389 1_3:+45496060 None:intergenic
CAAGTAGTTGATCTTGACAA+GGG 0.656926 1_3:+45496061 None:intergenic
ATCATTATGATTGCTCAATG+TGG 0.666694 1_3:+45494473 None:intergenic
ATGCTACGAGGAGAAAAGAG+AGG 0.681365 1_3:-45495929 Msa0120560:CDS
TATCTCGTCGCAGAGTATCG+CGG 0.686396 1_3:-45495749 Msa0120560:CDS
ACGCCAAAAGCTATGCTACG+AGG 0.715032 1_3:-45495941 Msa0120560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAGAAAAAACATAAATA+GGG + chr1_3:45494762-45494781 None:intergenic 15.0%
!! AAAACAGAAAAAACATAAAT+AGG + chr1_3:45494763-45494782 None:intergenic 15.0%
!!! ATTTTGTATTTTTGTTAACA+TGG - chr1_3:45494794-45494813 Msa0120560:intron 15.0%
!!! TTTTGTATTTTTGTTAACAT+GGG - chr1_3:45494795-45494814 Msa0120560:intron 15.0%
!! TATTGTTGTAAATATCTAAA+TGG - chr1_3:45495890-45495909 Msa0120560:CDS 15.0%
!! AAACAGAAAAAACATAAATA+GGG + chr1_3:45494762-45494781 None:intergenic 15.0%
!! AAAACAGAAAAAACATAAAT+AGG + chr1_3:45494763-45494782 None:intergenic 15.0%
!!! ATTTTGTATTTTTGTTAACA+TGG - chr1_3:45494794-45494813 Msa0120560:intron 15.0%
!!! TTTTGTATTTTTGTTAACAT+GGG - chr1_3:45494795-45494814 Msa0120560:intron 15.0%
!! TATTGTTGTAAATATCTAAA+TGG - chr1_3:45495890-45495909 Msa0120560:CDS 15.0%
!! TGTTTGAAAGTAGAAAATAT+AGG + chr1_3:45494712-45494731 None:intergenic 20.0%
!! CGTTTGATAAAAAAATATAG+AGG - chr1_3:45495834-45495853 Msa0120560:CDS 20.0%
!! CATAATAACACTACAATAAA+TGG + chr1_3:45495865-45495884 None:intergenic 20.0%
!! TTTACTCCATGAAAATATTT+AGG - chr1_3:45496025-45496044 Msa0120560:CDS 20.0%
!! TGTTTGAAAGTAGAAAATAT+AGG + chr1_3:45494712-45494731 None:intergenic 20.0%
!! CGTTTGATAAAAAAATATAG+AGG - chr1_3:45495834-45495853 Msa0120560:CDS 20.0%
!! CATAATAACACTACAATAAA+TGG + chr1_3:45495865-45495884 None:intergenic 20.0%
!! TTTACTCCATGAAAATATTT+AGG - chr1_3:45496025-45496044 Msa0120560:CDS 20.0%
!!! TAGTTTGAATAGGTTGATAA+GGG + chr1_3:45494854-45494873 None:intergenic 25.0%
! GTTTCATTCAAATAGTTAGA+GGG + chr1_3:45494948-45494967 None:intergenic 25.0%
! AGTTTCATTCAAATAGTTAG+AGG + chr1_3:45494949-45494968 None:intergenic 25.0%
! GTTTCATTTGAGTAAAAACA+AGG + chr1_3:45495005-45495024 None:intergenic 25.0%
!!! ATCATTTTGAGAAGAAAAAG+TGG + chr1_3:45495066-45495085 None:intergenic 25.0%
!!! ACTTTTTCTTCTCAAAATGA+TGG - chr1_3:45495065-45495084 Msa0120560:intron 25.0%
! AAACTCATCCACAAAAAAAT+TGG + chr1_3:45495219-45495238 None:intergenic 25.0%
! ACTTATGGAAACATTTAACA+AGG - chr1_3:45495514-45495533 Msa0120560:intron 25.0%
!! TTAAACTGTTTTGTGTACTT+AGG - chr1_3:45495626-45495645 Msa0120560:CDS 25.0%
! AGAAAAACATCAAATTCACT+TGG + chr1_3:45495666-45495685 None:intergenic 25.0%
! TTGTTTGTTCATTGCATATT+TGG - chr1_3:45495766-45495785 Msa0120560:CDS 25.0%
! AAAGACAAAATTGAGACAAT+AGG + chr1_3:45495978-45495997 None:intergenic 25.0%
!! TATTTTCATGGAGTAAAAGT+TGG + chr1_3:45496022-45496041 None:intergenic 25.0%
!! ACAGTTCCTAAATATTTTCA+TGG + chr1_3:45496034-45496053 None:intergenic 25.0%
! GGAACTGTTATAAAAATTGA+CGG - chr1_3:45496046-45496065 Msa0120560:CDS 25.0%
! TGTTAGGTTTAAGAAAATGT+TGG - chr1_3:45496076-45496095 Msa0120560:CDS 25.0%
!! CACGTATATATCTTAGATTT+TGG - chr1_3:45496392-45496411 Msa0120560:intron 25.0%
!! TTTTGCTAATTGACTATTTC+AGG - chr1_3:45496488-45496507 Msa0120560:intron 25.0%
!!! TAGTTTGAATAGGTTGATAA+GGG + chr1_3:45494854-45494873 None:intergenic 25.0%
! GTTTCATTCAAATAGTTAGA+GGG + chr1_3:45494948-45494967 None:intergenic 25.0%
! AGTTTCATTCAAATAGTTAG+AGG + chr1_3:45494949-45494968 None:intergenic 25.0%
! GTTTCATTTGAGTAAAAACA+AGG + chr1_3:45495005-45495024 None:intergenic 25.0%
!!! ATCATTTTGAGAAGAAAAAG+TGG + chr1_3:45495066-45495085 None:intergenic 25.0%
!!! ACTTTTTCTTCTCAAAATGA+TGG - chr1_3:45495065-45495084 Msa0120560:intron 25.0%
! AAACTCATCCACAAAAAAAT+TGG + chr1_3:45495219-45495238 None:intergenic 25.0%
! ACTTATGGAAACATTTAACA+AGG - chr1_3:45495514-45495533 Msa0120560:intron 25.0%
!! TTAAACTGTTTTGTGTACTT+AGG - chr1_3:45495626-45495645 Msa0120560:CDS 25.0%
! AGAAAAACATCAAATTCACT+TGG + chr1_3:45495666-45495685 None:intergenic 25.0%
! TTGTTTGTTCATTGCATATT+TGG - chr1_3:45495766-45495785 Msa0120560:CDS 25.0%
! AAAGACAAAATTGAGACAAT+AGG + chr1_3:45495978-45495997 None:intergenic 25.0%
!! TATTTTCATGGAGTAAAAGT+TGG + chr1_3:45496022-45496041 None:intergenic 25.0%
!! ACAGTTCCTAAATATTTTCA+TGG + chr1_3:45496034-45496053 None:intergenic 25.0%
! GGAACTGTTATAAAAATTGA+CGG - chr1_3:45496046-45496065 Msa0120560:CDS 25.0%
! TGTTAGGTTTAAGAAAATGT+TGG - chr1_3:45496076-45496095 Msa0120560:CDS 25.0%
!! CACGTATATATCTTAGATTT+TGG - chr1_3:45496392-45496411 Msa0120560:intron 25.0%
!! TTTTGCTAATTGACTATTTC+AGG - chr1_3:45496488-45496507 Msa0120560:intron 25.0%
TTTGTGGGTTCAGAAAATTT+AGG + chr1_3:45494429-45494448 None:intergenic 30.0%
TTGAAGGGAAAAAAAGACTA+CGG + chr1_3:45494564-45494583 None:intergenic 30.0%
!! GTAGTTTGAATAGGTTGATA+AGG + chr1_3:45494855-45494874 None:intergenic 30.0%
!! AAGTTGTTGGTAGTTTGAAT+AGG + chr1_3:45494864-45494883 None:intergenic 30.0%
AGTAGTGATTTCTAAGTTGT+TGG + chr1_3:45494877-45494896 None:intergenic 30.0%
TCAAATAGTTAGAGGGAAAA+TGG + chr1_3:45494941-45494960 None:intergenic 30.0%
! GAATGAAATTTTCCCAAATG+AGG - chr1_3:45495100-45495119 Msa0120560:intron 30.0%
! TTTTGGACATGTAAGGTAAT+TGG + chr1_3:45495135-45495154 None:intergenic 30.0%
!!! GAACTCAACCAATTTTTTTG+TGG - chr1_3:45495208-45495227 Msa0120560:intron 30.0%
!!! ACAATTTTTGAAGCAGCAAA+GGG + chr1_3:45495287-45495306 None:intergenic 30.0%
!!! AACAATTTTTGAAGCAGCAA+AGG + chr1_3:45495288-45495307 None:intergenic 30.0%
ACTCAAATGATTACAAGCAA+GGG + chr1_3:45495808-45495827 None:intergenic 30.0%
TACTCAAATGATTACAAGCA+AGG + chr1_3:45495809-45495828 None:intergenic 30.0%
TAATGCTGTTGTTGTAGATT+TGG - chr1_3:45495917-45495936 Msa0120560:CDS 30.0%
CTGTTATAAAAATTGACGGA+TGG - chr1_3:45496050-45496069 Msa0120560:CDS 30.0%
!! CAATAAACGAGAGAGTATTT+AGG - chr1_3:45496222-45496241 Msa0120560:CDS 30.0%
TTGACTATTTCAGGAAGAAA+AGG - chr1_3:45496497-45496516 Msa0120560:intron 30.0%
TACAGTTTCTCTTGAACAAA+TGG + chr1_3:45496564-45496583 None:intergenic 30.0%
ATCATTATGATTGCTCAATG+TGG + chr1_3:45496625-45496644 None:intergenic 30.0%
ATCAAAACCTACCATTCTTA+AGG - chr1_3:45496650-45496669 Msa0120560:intron 30.0%
TCAAAACCTACCATTCTTAA+GGG - chr1_3:45496651-45496670 Msa0120560:intron 30.0%
TTTGTGGGTTCAGAAAATTT+AGG + chr1_3:45494429-45494448 None:intergenic 30.0%
TTGAAGGGAAAAAAAGACTA+CGG + chr1_3:45494564-45494583 None:intergenic 30.0%
!! GTAGTTTGAATAGGTTGATA+AGG + chr1_3:45494855-45494874 None:intergenic 30.0%
!! AAGTTGTTGGTAGTTTGAAT+AGG + chr1_3:45494864-45494883 None:intergenic 30.0%
AGTAGTGATTTCTAAGTTGT+TGG + chr1_3:45494877-45494896 None:intergenic 30.0%
TCAAATAGTTAGAGGGAAAA+TGG + chr1_3:45494941-45494960 None:intergenic 30.0%
! GAATGAAATTTTCCCAAATG+AGG - chr1_3:45495100-45495119 Msa0120560:intron 30.0%
! TTTTGGACATGTAAGGTAAT+TGG + chr1_3:45495135-45495154 None:intergenic 30.0%
!!! GAACTCAACCAATTTTTTTG+TGG - chr1_3:45495208-45495227 Msa0120560:intron 30.0%
!!! ACAATTTTTGAAGCAGCAAA+GGG + chr1_3:45495287-45495306 None:intergenic 30.0%
!!! AACAATTTTTGAAGCAGCAA+AGG + chr1_3:45495288-45495307 None:intergenic 30.0%
ACTCAAATGATTACAAGCAA+GGG + chr1_3:45495808-45495827 None:intergenic 30.0%
TACTCAAATGATTACAAGCA+AGG + chr1_3:45495809-45495828 None:intergenic 30.0%
TAATGCTGTTGTTGTAGATT+TGG - chr1_3:45495917-45495936 Msa0120560:CDS 30.0%
CTGTTATAAAAATTGACGGA+TGG - chr1_3:45496050-45496069 Msa0120560:CDS 30.0%
!! CAATAAACGAGAGAGTATTT+AGG - chr1_3:45496222-45496241 Msa0120560:CDS 30.0%
TTGACTATTTCAGGAAGAAA+AGG - chr1_3:45496497-45496516 Msa0120560:intron 30.0%
TACAGTTTCTCTTGAACAAA+TGG + chr1_3:45496564-45496583 None:intergenic 30.0%
ATCATTATGATTGCTCAATG+TGG + chr1_3:45496625-45496644 None:intergenic 30.0%
ATCAAAACCTACCATTCTTA+AGG - chr1_3:45496650-45496669 Msa0120560:intron 30.0%
TCAAAACCTACCATTCTTAA+GGG - chr1_3:45496651-45496670 Msa0120560:intron 30.0%
GAAAATTTAGGAGAAGTTCG+AGG + chr1_3:45494417-45494436 None:intergenic 35.0%
TGAACCCACAAACTATCATA+AGG - chr1_3:45494437-45494456 Msa0120560:CDS 35.0%
! ACTGCCTTATGATAGTTTGT+GGG + chr1_3:45494444-45494463 None:intergenic 35.0%
TGAAGGGAAAAAAAGACTAC+GGG + chr1_3:45494563-45494582 None:intergenic 35.0%
TGAATCTTTGCTAGGTTTGA+GGG + chr1_3:45494600-45494619 None:intergenic 35.0%
GATATGTGTGAATCTTTGCT+AGG + chr1_3:45494608-45494627 None:intergenic 35.0%
AATAGTTAGAGGGAAAATGG+TGG + chr1_3:45494938-45494957 None:intergenic 35.0%
CAAGTAGTTGATCTTGACAA+GGG + chr1_3:45495037-45495056 None:intergenic 35.0%
ACAAGTAGTTGATCTTGACA+AGG + chr1_3:45495038-45495057 None:intergenic 35.0%
TGGTGAAATCTTCCTCATTT+GGG + chr1_3:45495115-45495134 None:intergenic 35.0%
TTGGTGAAATCTTCCTCATT+TGG + chr1_3:45495116-45495135 None:intergenic 35.0%
GTTCAATGTGAGAAGAAAGT+TGG - chr1_3:45495314-45495333 Msa0120560:intron 35.0%
AAGTTTCTTCAAGCTCAAGT+TGG - chr1_3:45495482-45495501 Msa0120560:intron 35.0%
AGTTGGAATGCTTCAACTTA+TGG - chr1_3:45495499-45495518 Msa0120560:intron 35.0%
GCAATGAACAAACAAACTCT+AGG + chr1_3:45495761-45495780 None:intergenic 35.0%
ATTGAGACAATAGGTAGTCA+TGG + chr1_3:45495969-45495988 None:intergenic 35.0%
! AATTGACGGATGGAATTGTT+AGG - chr1_3:45496060-45496079 Msa0120560:CDS 35.0%
AGGAAACGGTTAATAAGAAG+AGG - chr1_3:45496192-45496211 Msa0120560:CDS 35.0%
CGGTTAATAAGAAGAGGAAA+TGG - chr1_3:45496198-45496217 Msa0120560:CDS 35.0%
CAAGTGTATATCAAATGAGC+TGG - chr1_3:45496250-45496269 Msa0120560:CDS 35.0%
GGCTATGTAACTGTTTAACA+AGG - chr1_3:45496271-45496290 Msa0120560:CDS 35.0%
AGTTTGTGTAGATCTTCACT+TGG + chr1_3:45496531-45496550 None:intergenic 35.0%
! AATGTGGTGACAAACTCTTT+TGG + chr1_3:45496609-45496628 None:intergenic 35.0%
GAAAATTTAGGAGAAGTTCG+AGG + chr1_3:45494417-45494436 None:intergenic 35.0%
TGAACCCACAAACTATCATA+AGG - chr1_3:45494437-45494456 Msa0120560:CDS 35.0%
! ACTGCCTTATGATAGTTTGT+GGG + chr1_3:45494444-45494463 None:intergenic 35.0%
TGAAGGGAAAAAAAGACTAC+GGG + chr1_3:45494563-45494582 None:intergenic 35.0%
TGAATCTTTGCTAGGTTTGA+GGG + chr1_3:45494600-45494619 None:intergenic 35.0%
GATATGTGTGAATCTTTGCT+AGG + chr1_3:45494608-45494627 None:intergenic 35.0%
AATAGTTAGAGGGAAAATGG+TGG + chr1_3:45494938-45494957 None:intergenic 35.0%
CAAGTAGTTGATCTTGACAA+GGG + chr1_3:45495037-45495056 None:intergenic 35.0%
ACAAGTAGTTGATCTTGACA+AGG + chr1_3:45495038-45495057 None:intergenic 35.0%
TGGTGAAATCTTCCTCATTT+GGG + chr1_3:45495115-45495134 None:intergenic 35.0%
TTGGTGAAATCTTCCTCATT+TGG + chr1_3:45495116-45495135 None:intergenic 35.0%
GTTCAATGTGAGAAGAAAGT+TGG - chr1_3:45495314-45495333 Msa0120560:intron 35.0%
AAGTTTCTTCAAGCTCAAGT+TGG - chr1_3:45495482-45495501 Msa0120560:intron 35.0%
AGTTGGAATGCTTCAACTTA+TGG - chr1_3:45495499-45495518 Msa0120560:intron 35.0%
GCAATGAACAAACAAACTCT+AGG + chr1_3:45495761-45495780 None:intergenic 35.0%
ATTGAGACAATAGGTAGTCA+TGG + chr1_3:45495969-45495988 None:intergenic 35.0%
! AATTGACGGATGGAATTGTT+AGG - chr1_3:45496060-45496079 Msa0120560:CDS 35.0%
AGGAAACGGTTAATAAGAAG+AGG - chr1_3:45496192-45496211 Msa0120560:CDS 35.0%
CGGTTAATAAGAAGAGGAAA+TGG - chr1_3:45496198-45496217 Msa0120560:CDS 35.0%
CAAGTGTATATCAAATGAGC+TGG - chr1_3:45496250-45496269 Msa0120560:CDS 35.0%
GGCTATGTAACTGTTTAACA+AGG - chr1_3:45496271-45496290 Msa0120560:CDS 35.0%
AGTTTGTGTAGATCTTCACT+TGG + chr1_3:45496531-45496550 None:intergenic 35.0%
! AATGTGGTGACAAACTCTTT+TGG + chr1_3:45496609-45496628 None:intergenic 35.0%
CACTGCCTTATGATAGTTTG+TGG + chr1_3:45494445-45494464 None:intergenic 40.0%
GGTTTGAGAGAGAGATTGAA+GGG + chr1_3:45494579-45494598 None:intergenic 40.0%
GTGAATCTTTGCTAGGTTTG+AGG + chr1_3:45494601-45494620 None:intergenic 40.0%
!! CACTGATTCTTCTCTCTCTA+AGG - chr1_3:45494665-45494684 Msa0120560:intron 40.0%
GTTGATCTTGACAAGGGTTA+GGG + chr1_3:45495031-45495050 None:intergenic 40.0%
AGTTGATCTTGACAAGGGTT+AGG + chr1_3:45495032-45495051 None:intergenic 40.0%
!! TTTGGCGTTTTGGACATGTA+AGG + chr1_3:45495142-45495161 None:intergenic 40.0%
! TAGCATAGCTTTTGGCGTTT+TGG + chr1_3:45495152-45495171 None:intergenic 40.0%
GAGTTCAAAAGCTCTTGTTG+TGG + chr1_3:45495194-45495213 None:intergenic 40.0%
AAGCAAAAGGGTTAGGGTTA+GGG + chr1_3:45495250-45495269 None:intergenic 40.0%
CAAAGGAAGCAAAAGGGTTA+GGG + chr1_3:45495256-45495275 None:intergenic 40.0%
TCAAAGGAAGCAAAAGGGTT+AGG + chr1_3:45495257-45495276 None:intergenic 40.0%
! TAACCCTTTTGCTTCCTTTG+AGG - chr1_3:45495256-45495275 Msa0120560:intron 40.0%
CTACCTCAAAGGAAGCAAAA+GGG + chr1_3:45495262-45495281 None:intergenic 40.0%
TCTACCTCAAAGGAAGCAAA+AGG + chr1_3:45495263-45495282 None:intergenic 40.0%
!! GTGAGAAGAAAGTTGGTGAA+AGG - chr1_3:45495321-45495340 Msa0120560:intron 40.0%
ATCTCTGCTGTGTTCATCTT+TGG + chr1_3:45495437-45495456 None:intergenic 40.0%
!! GAGTGAGAGTGTTAAGGAAA+CGG - chr1_3:45496178-45496197 Msa0120560:CDS 40.0%
TTGTGTAGATCTTCACTTGG+AGG + chr1_3:45496528-45496547 None:intergenic 40.0%
TTCAGACCCTTAAGAATGGT+AGG + chr1_3:45496660-45496679 None:intergenic 40.0%
CTGTTTCAGACCCTTAAGAA+TGG + chr1_3:45496664-45496683 None:intergenic 40.0%
CACTGCCTTATGATAGTTTG+TGG + chr1_3:45494445-45494464 None:intergenic 40.0%
GGTTTGAGAGAGAGATTGAA+GGG + chr1_3:45494579-45494598 None:intergenic 40.0%
GTGAATCTTTGCTAGGTTTG+AGG + chr1_3:45494601-45494620 None:intergenic 40.0%
!! CACTGATTCTTCTCTCTCTA+AGG - chr1_3:45494665-45494684 Msa0120560:intron 40.0%
GTTGATCTTGACAAGGGTTA+GGG + chr1_3:45495031-45495050 None:intergenic 40.0%
AGTTGATCTTGACAAGGGTT+AGG + chr1_3:45495032-45495051 None:intergenic 40.0%
!! TTTGGCGTTTTGGACATGTA+AGG + chr1_3:45495142-45495161 None:intergenic 40.0%
! TAGCATAGCTTTTGGCGTTT+TGG + chr1_3:45495152-45495171 None:intergenic 40.0%
GAGTTCAAAAGCTCTTGTTG+TGG + chr1_3:45495194-45495213 None:intergenic 40.0%
AAGCAAAAGGGTTAGGGTTA+GGG + chr1_3:45495250-45495269 None:intergenic 40.0%
CAAAGGAAGCAAAAGGGTTA+GGG + chr1_3:45495256-45495275 None:intergenic 40.0%
TCAAAGGAAGCAAAAGGGTT+AGG + chr1_3:45495257-45495276 None:intergenic 40.0%
! TAACCCTTTTGCTTCCTTTG+AGG - chr1_3:45495256-45495275 Msa0120560:intron 40.0%
CTACCTCAAAGGAAGCAAAA+GGG + chr1_3:45495262-45495281 None:intergenic 40.0%
TCTACCTCAAAGGAAGCAAA+AGG + chr1_3:45495263-45495282 None:intergenic 40.0%
!! GTGAGAAGAAAGTTGGTGAA+AGG - chr1_3:45495321-45495340 Msa0120560:intron 40.0%
ATCTCTGCTGTGTTCATCTT+TGG + chr1_3:45495437-45495456 None:intergenic 40.0%
!! GAGTGAGAGTGTTAAGGAAA+CGG - chr1_3:45496178-45496197 Msa0120560:CDS 40.0%
TTGTGTAGATCTTCACTTGG+AGG + chr1_3:45496528-45496547 None:intergenic 40.0%
TTCAGACCCTTAAGAATGGT+AGG + chr1_3:45496660-45496679 None:intergenic 40.0%
CTGTTTCAGACCCTTAAGAA+TGG + chr1_3:45496664-45496683 None:intergenic 40.0%
GGGTTTGAGAGAGAGATTGA+AGG + chr1_3:45494580-45494599 None:intergenic 45.0%
! TCTCCTCGTAGCATAGCTTT+TGG + chr1_3:45495160-45495179 None:intergenic 45.0%
ATGCTACGAGGAGAAAAGAG+AGG - chr1_3:45495166-45495185 Msa0120560:intron 45.0%
GAAGCAAAAGGGTTAGGGTT+AGG + chr1_3:45495251-45495270 None:intergenic 45.0%
AGCAAAGGGTTCTACCTCAA+AGG + chr1_3:45495273-45495292 None:intergenic 45.0%
ACTGAGAAGACACAAGTGCT+TGG - chr1_3:45495392-45495411 Msa0120560:intron 45.0%
CTGAGAAGACACAAGTGCTT+GGG - chr1_3:45495393-45495412 Msa0120560:intron 45.0%
!! GAGAGAGAGTGAGAGTGTTA+AGG - chr1_3:45496172-45496191 Msa0120560:CDS 45.0%
TGTAGATCTTCACTTGGAGG+AGG + chr1_3:45496525-45496544 None:intergenic 45.0%
GGGTTTGAGAGAGAGATTGA+AGG + chr1_3:45494580-45494599 None:intergenic 45.0%
! TCTCCTCGTAGCATAGCTTT+TGG + chr1_3:45495160-45495179 None:intergenic 45.0%
ATGCTACGAGGAGAAAAGAG+AGG - chr1_3:45495166-45495185 Msa0120560:intron 45.0%
GAAGCAAAAGGGTTAGGGTT+AGG + chr1_3:45495251-45495270 None:intergenic 45.0%
AGCAAAGGGTTCTACCTCAA+AGG + chr1_3:45495273-45495292 None:intergenic 45.0%
ACTGAGAAGACACAAGTGCT+TGG - chr1_3:45495392-45495411 Msa0120560:intron 45.0%
CTGAGAAGACACAAGTGCTT+GGG - chr1_3:45495393-45495412 Msa0120560:intron 45.0%
!! GAGAGAGAGTGAGAGTGTTA+AGG - chr1_3:45496172-45496191 Msa0120560:CDS 45.0%
TGTAGATCTTCACTTGGAGG+AGG + chr1_3:45496525-45496544 None:intergenic 45.0%
ACGCCAAAAGCTATGCTACG+AGG - chr1_3:45495154-45495173 Msa0120560:intron 50.0%
!! TATCTCGTCGCAGAGTATCG+CGG - chr1_3:45495346-45495365 Msa0120560:intron 50.0%
GACACAAGTGCTTGGGAAGT+TGG - chr1_3:45495400-45495419 Msa0120560:intron 50.0%
GTGTTCATCTTTGGTCCACC+AGG + chr1_3:45495428-45495447 None:intergenic 50.0%
! AAGGGTCTGAAACAGCTTGC+TGG - chr1_3:45496669-45496688 Msa0120560:intron 50.0%
! AGGGTCTGAAACAGCTTGCT+GGG - chr1_3:45496670-45496689 Msa0120560:intron 50.0%
ACGCCAAAAGCTATGCTACG+AGG - chr1_3:45495154-45495173 Msa0120560:intron 50.0%
!! TATCTCGTCGCAGAGTATCG+CGG - chr1_3:45495346-45495365 Msa0120560:intron 50.0%
GACACAAGTGCTTGGGAAGT+TGG - chr1_3:45495400-45495419 Msa0120560:intron 50.0%
GTGTTCATCTTTGGTCCACC+AGG + chr1_3:45495428-45495447 None:intergenic 50.0%
! AAGGGTCTGAAACAGCTTGC+TGG - chr1_3:45496669-45496688 Msa0120560:intron 50.0%
! AGGGTCTGAAACAGCTTGCT+GGG - chr1_3:45496670-45496689 Msa0120560:intron 50.0%
!! AGAGTATCGCGGCGAGAGAA+AGG - chr1_3:45495357-45495376 Msa0120560:intron 55.0%
! GTGCTTGGGAAGTTGGTTCC+TGG - chr1_3:45495407-45495426 Msa0120560:intron 55.0%
! CTTGGGAAGTTGGTTCCTGG+TGG - chr1_3:45495410-45495429 Msa0120560:intron 55.0%
!! AGAGTATCGCGGCGAGAGAA+AGG - chr1_3:45495357-45495376 Msa0120560:intron 55.0%
! GTGCTTGGGAAGTTGGTTCC+TGG - chr1_3:45495407-45495426 Msa0120560:intron 55.0%
! CTTGGGAAGTTGGTTCCTGG+TGG - chr1_3:45495410-45495429 Msa0120560:intron 55.0%
TCGCGGCGAGAGAAAGGAGA+AGG - chr1_3:45495363-45495382 Msa0120560:intron 60.0%
TCGCGGCGAGAGAAAGGAGA+AGG - chr1_3:45495363-45495382 Msa0120560:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 45494392 45496725 45494392 ID=Msa0120560;Name=Msa0120560
chr1_3 mRNA 45494392 45496725 45494392 ID=Msa0120560-mRNA-1;Parent=Msa0120560;Name=Msa0120560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|0.66|1|0.66|3|0|321
chr1_3 exon 45496718 45496725 45496718 ID=Msa0120560-mRNA-1:exon:13668;Parent=Msa0120560-mRNA-1
chr1_3 exon 45495582 45496323 45495582 ID=Msa0120560-mRNA-1:exon:13667;Parent=Msa0120560-mRNA-1
chr1_3 exon 45494392 45494607 45494392 ID=Msa0120560-mRNA-1:exon:13666;Parent=Msa0120560-mRNA-1
chr1_3 CDS 45496718 45496725 45496718 ID=Msa0120560-mRNA-1:cds;Parent=Msa0120560-mRNA-1
chr1_3 CDS 45495582 45496323 45495582 ID=Msa0120560-mRNA-1:cds;Parent=Msa0120560-mRNA-1
chr1_3 CDS 45494392 45494607 45494392 ID=Msa0120560-mRNA-1:cds;Parent=Msa0120560-mRNA-1
Gene Sequence

>Msa0120560

ATGCATAGATTTTGTATTTTTGTTAACATGGGAGCACTTAGCACATACTTCAACTATAATTGTTACCCTTATCAACCTATTCAAACTACCAACAACTTAGAAATCACTACTTTTCAACATCATGAACAAGAACAATTTGTGCAACAAAACCACCATTTTCCCTCTAACTATTTGAATGAAACTTCTCTTTTAGATGAAAGCTTCATTTTTCAAACTCCTTGTTTTTACTCAAATGAAACTTACCCTAACCCTTGTCAAGATCAACTACTTGTTGACTCCACTTTTTCTTCTCAAAATGATGGCTTTGTTTCAATGAATGAAATTTTCCCAAATGAGGAAGATTTCACCAATTACCTTACATGTCCAAAACGCCAAAAGCTATGCTACGAGGAGAAAAGAGAGGAACCACAACAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTAACCCTAACCCTTTTGCTTCCTTTGAGGTAGAACCCTTTGCTGCTTCAAAAATTGTTGATCTTGTTCAATGTGAGAAGAAAGTTGGTGAAAGGACTATCTCGTCGCAGAGTATCGCGGCGAGAGAAAGGAGAAGGAAGATAACTGAGAAGACACAAGTGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTAATGCTGCTGCTAATTATGTCAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACATTTAACAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTTCTTCTTTCTCCATTTGTTCAAGAGAAACTGTATTCAGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCACATTGAGCAATCATAATGATGTTCAATCAAAACCTACCATTCTTAAGGGTCTGAAACAGCTTGCTGGGACTGAGATTGAGAAGAAACCAAAGCAAGAATAG
Protein sequence

>Msa0120560

MHRFCIFVNMGALSTYFNYNCYPYQPIQTTNNLEITTFQHHEQEQFVQQNHHFPSNYLNETSLLDESFIFQTPCFYSNETYPNPCQDQLLVDSTFSSQNDGFVSMNEIFPNEEDFTNYLTCPKRQKLCYEEKREEPQQELLNSTNFFVDEFMTNPNPNPFASFEVEPFAASKIVDLVQCEKKVGERTISSQSIAARERRRKITEKTQVLGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQLMETFNKEEKEPPPSEDLHKLLLSPFVQEKLYSEEKCFVPKEFVTTLSNHNDVQSKPTILKGLKQLAGTEIEKKPKQE*