AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123200 MtrunA17_Chr1g0183741 98.182 275 5 0 1 275 1 275 0.0 574
Msa0123200 MtrunA17_Chr7g0261411 76.109 293 50 7 1 275 1 291 1.13e-151 425
Msa0123200 MtrunA17_Chr2g0312321 46.914 243 111 5 6 234 7 245 3.26e-67 211
Msa0123200 MtrunA17_Chr2g0316971 56.875 160 63 1 8 161 21 180 1.02e-61 199
Msa0123200 MtrunA17_Chr3g0139331 42.917 240 111 5 9 234 10 237 5.81e-59 191
Msa0123200 MtrunA17_Chr4g0060931 47.449 196 87 4 5 186 12 205 1.93e-58 190
Msa0123200 MtrunA17_Chr1g0147421 53.165 158 71 2 2 156 19 176 4.64e-58 189
Msa0123200 MtrunA17_Chr4g0018391 46.305 203 90 5 8 194 5 204 5.91e-58 188
Msa0123200 MtrunA17_Chr3g0091921 50.267 187 77 5 10 182 16 200 3.79e-57 185
Msa0123200 MtrunA17_Chr5g0405211 48.718 195 88 5 8 192 6 198 4.78e-57 186
Msa0123200 MtrunA17_Chr6g0461661 54.140 157 66 2 10 160 18 174 9.28e-57 186
Msa0123200 MtrunA17_Chr7g0253011 55.000 160 64 3 5 156 12 171 4.03e-56 185
Msa0123200 MtrunA17_Chr6g0484441 55.705 149 62 2 10 156 5 151 6.61e-56 182
Msa0123200 MtrunA17_Chr6g0453451 37.586 290 152 7 4 273 10 290 7.36e-56 182
Msa0123200 MtrunA17_Chr8g0372121 47.312 186 88 5 8 185 4 187 8.36e-56 182
Msa0123200 MtrunA17_Chr5g0398971 54.248 153 63 3 10 156 7 158 4.79e-55 181
Msa0123200 MtrunA17_Chr2g0318101 40.408 245 124 5 10 233 15 258 2.83e-54 179
Msa0123200 MtrunA17_Chr4g0056541 52.866 157 67 3 8 159 5 159 3.84e-54 179
Msa0123200 MtrunA17_Chr4g0017921 54.902 153 63 3 8 156 6 156 4.21e-54 179
Msa0123200 MtrunA17_Chr7g0217721 39.764 254 106 6 13 221 22 273 7.43e-53 175
Msa0123200 MtrunA17_Chr3g0144271 55.172 145 61 2 10 153 23 164 9.15e-53 177
Msa0123200 MtrunA17_Chr7g0252971 42.857 203 89 3 10 185 8 210 1.08e-52 174
Msa0123200 MtrunA17_Chr6g0481091 41.860 215 115 4 8 216 4 214 1.45e-52 171
Msa0123200 MtrunA17_Chr2g0309891 54.194 155 62 3 9 156 5 157 5.48e-52 173
Msa0123200 MtrunA17_Chr1g0200561 52.229 157 68 4 5 156 14 168 5.70e-52 173
Msa0123200 MtrunA17_Chr4g0047841 45.810 179 70 2 10 161 15 193 4.47e-51 171
Msa0123200 MtrunA17_Chr7g0214071 48.235 170 81 3 10 177 15 179 1.45e-50 167
Msa0123200 MtrunA17_Chr2g0309331 44.335 203 99 6 9 206 9 202 1.87e-50 169
Msa0123200 MtrunA17_Chr3g0109821 43.868 212 85 5 8 212 4 188 3.07e-50 175
Msa0123200 MtrunA17_Chr3g0124761 51.899 158 64 3 10 159 7 160 1.04e-49 165
Msa0123200 MtrunA17_Chr8g0384721 50.625 160 67 3 10 160 7 163 1.16e-49 165
Msa0123200 MtrunA17_Chr4g0042561 46.061 165 76 4 6 159 5 167 2.28e-49 164
Msa0123200 MtrunA17_Chr5g0417791 46.452 155 73 2 10 156 3 155 5.98e-49 162
Msa0123200 MtrunA17_Chr5g0433781 54.140 157 60 4 8 156 4 156 1.17e-48 170
Msa0123200 MtrunA17_Chr2g0326361 49.045 157 72 2 9 157 13 169 1.40e-48 163
Msa0123200 MtrunA17_Chr3g0130731 50.625 160 66 4 10 160 7 162 1.71e-48 162
Msa0123200 MtrunA17_Chr7g0217711 54.762 126 55 1 13 138 22 145 3.06e-47 155
Msa0123200 MtrunA17_Chr8g0346001 45.455 165 72 3 8 156 13 175 3.23e-47 163
Msa0123200 MtrunA17_Chr7g0263931 47.742 155 73 1 10 156 11 165 5.93e-47 159
Msa0123200 MtrunA17_Chr5g0400461 49.398 166 76 4 7 164 3 168 1.40e-46 159
Msa0123200 MtrunA17_Chr2g0318081 48.171 164 75 3 1 156 3 164 1.74e-46 159
Msa0123200 MtrunA17_Chr8g0361731 37.555 229 125 3 12 222 16 244 4.12e-46 159
Msa0123200 MtrunA17_Chr8g0359921 48.701 154 71 2 9 156 13 164 5.50e-45 154
Msa0123200 MtrunA17_Chr5g0417001 37.156 218 117 4 12 211 16 231 2.12e-44 154
Msa0123200 MtrunA17_Chr4g0054791 40.351 228 107 7 7 223 3 212 3.65e-43 149
Msa0123200 MtrunA17_Chr6g0453131 43.750 160 76 3 10 156 15 173 8.10e-43 150
Msa0123200 MtrunA17_Chr1g0197351 47.531 162 67 4 9 156 41 198 1.47e-42 151
Msa0123200 MtrunA17_Chr3g0130101 45.695 151 74 3 12 156 9 157 8.13e-41 144
Msa0123200 MtrunA17_Chr3g0092671 49.007 151 69 4 12 156 7 155 8.41e-41 147
Msa0123200 MtrunA17_Chr1g0197361 44.751 181 91 6 12 185 10 188 1.56e-40 147
Msa0123200 MtrunA17_Chr4g0076731 41.176 204 101 5 12 212 56 243 5.09e-40 144
Msa0123200 MtrunA17_Chr5g0428991 49.020 153 70 3 10 156 25 175 8.66e-40 146
Msa0123200 MtrunA17_Chr3g0128151 42.632 190 85 5 9 176 21 208 1.36e-39 145
Msa0123200 MtrunA17_Chr3g0128111 46.667 150 72 3 13 156 45 192 1.67e-39 138
Msa0123200 MtrunA17_Chr2g0311651 38.182 220 113 7 12 208 24 243 1.75e-39 139
Msa0123200 MtrunA17_Chr5g0442771 42.073 164 71 3 12 156 20 178 1.88e-39 139
Msa0123200 MtrunA17_Chr8g0364791 34.568 243 137 6 10 234 6 244 4.34e-39 141
Msa0123200 MtrunA17_Chr2g0311661 36.283 226 115 6 12 210 23 246 1.41e-38 137
Msa0123200 MtrunA17_Chr4g0038751 42.953 149 79 3 12 157 17 162 8.43e-37 132
Msa0123200 MtrunA17_Chr8g0345671 46.939 147 73 4 10 153 11 155 2.22e-36 133
Msa0123200 MtrunA17_Chr1g0201021 45.033 151 75 3 12 156 21 169 3.73e-36 135
Msa0123200 MtrunA17_Chr8g0385991 40.000 160 85 3 3 153 7 164 6.32e-36 128
Msa0123200 MtrunA17_Chr8g0384201 41.176 153 82 3 10 156 6 156 8.16e-35 130
Msa0123200 MtrunA17_Chr8g0345691 43.537 147 78 4 10 153 12 156 1.14e-34 129
Msa0123200 MtrunA17_Chr3g0131911 41.463 164 82 3 8 159 12 173 2.57e-34 124
Msa0123200 MtrunA17_Chr3g0113001 38.947 190 85 6 58 221 13 197 1.54e-33 124
Msa0123200 MtrunA17_Chr2g0321631 43.038 158 74 6 11 154 5 160 4.50e-33 121
Msa0123200 MtrunA17_Chr4g0026141 38.994 159 80 5 10 154 5 160 4.03e-32 119
Msa0123200 MtrunA17_Chr4g0050701 36.364 165 85 3 10 163 11 166 8.74e-31 113
Msa0123200 MtrunA17_Chr7g0266701 37.195 164 87 6 10 158 4 166 7.95e-30 113
Msa0123200 MtrunA17_Chr8g0345711 42.636 129 70 3 10 135 12 139 5.39e-28 105
Msa0123200 MtrunA17_Chr8g0345721 36.095 169 70 4 4 135 24 191 1.13e-27 106
Msa0123200 MtrunA17_Chr8g0345701 38.514 148 71 5 5 135 2 146 1.32e-26 102
Msa0123200 MtrunA17_Chr3g0113031 37.500 176 78 6 73 221 3 173 7.10e-26 102
Msa0123200 MtrunA17_Chr8g0345731 40.458 131 73 3 10 135 24 154 6.60e-25 97.8
Msa0123200 MtrunA17_Chr7g0243371 53.750 80 37 0 65 144 19 98 8.82e-25 95.9
Msa0123200 MtrunA17_Chr2g0321741 41.600 125 67 4 30 153 12 131 1.04e-23 98.6
Msa0123200 MtrunA17_Chr8g0345741 36.496 137 78 4 21 154 2 132 4.50e-23 92.4
Msa0123200 MtrunA17_Chr8g0384351 37.748 151 76 5 8 158 8 140 1.19e-21 89.4
Msa0123200 MtrunA17_Chr7g0251651 32.593 135 85 4 7 139 15 145 1.25e-16 76.3
Msa0123200 MtrunA17_Chr3g0130321 28.249 177 100 5 8 169 5 169 1.33e-16 76.6
Msa0123200 MtrunA17_Chr7g0251671 33.553 152 85 5 1 145 1 143 2.24e-16 74.7
Msa0123200 MtrunA17_Chr7g0251661 29.252 147 98 4 1 145 1 143 8.05e-16 73.2
Msa0123200 MtrunA17_Chr3g0113011 50.000 48 24 0 9 56 18 65 1.30e-12 62.0
Msa0123200 MtrunA17_Chr4g0040541 29.714 175 96 8 2 156 41 208 2.13e-11 63.2
Msa0123200 MtrunA17_Chr3g0113041 51.163 43 21 0 14 56 23 65 6.98e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123200 AT4G28530.1 72.414 174 32 2 1 158 1 174 3.44e-89 269
Msa0123200 AT1G76420.1 56.875 160 66 1 9 165 21 180 4.51e-62 199
Msa0123200 AT1G56010.2 43.011 279 137 8 6 274 15 281 2.82e-61 197
Msa0123200 AT2G24430.2 55.629 151 64 1 9 156 15 165 1.24e-60 195
Msa0123200 AT2G24430.1 55.629 151 64 1 9 156 15 165 1.24e-60 195
Msa0123200 AT2G18060.3 50.794 189 82 6 8 187 7 193 4.11e-60 195
Msa0123200 AT2G18060.1 50.794 189 82 6 8 187 7 193 4.11e-60 195
Msa0123200 AT5G53950.1 49.724 181 85 1 10 184 17 197 2.97e-59 193
Msa0123200 AT3G18400.1 44.068 236 100 6 10 215 5 238 5.39e-59 190
Msa0123200 AT3G12977.1 56.410 156 61 3 6 156 14 167 1.11e-58 189
Msa0123200 AT4G36160.2 48.438 192 88 5 5 187 9 198 1.20e-58 191
Msa0123200 AT4G36160.1 48.438 192 88 5 5 187 5 194 1.34e-58 191
Msa0123200 AT4G36160.3 48.438 192 88 5 5 187 5 194 1.34e-58 191
Msa0123200 AT5G61430.1 57.516 153 57 3 10 156 16 166 1.51e-58 190
Msa0123200 AT5G07680.2 56.863 153 58 3 10 156 3 153 3.77e-58 188
Msa0123200 AT5G07680.1 55.696 158 62 3 5 156 12 167 6.29e-58 188
Msa0123200 AT1G12260.2 54.605 152 62 3 10 156 7 156 1.82e-56 185
Msa0123200 AT1G12260.1 54.605 152 62 3 10 156 7 156 2.84e-56 186
Msa0123200 AT5G39610.1 55.556 153 60 3 10 156 20 170 1.03e-55 181
Msa0123200 AT1G62700.1 53.896 154 64 3 8 156 5 156 1.53e-55 184
Msa0123200 AT1G62700.2 53.896 154 64 3 8 156 5 156 1.53e-55 184
Msa0123200 AT3G15170.1 52.667 150 65 1 10 153 20 169 1.86e-55 181
Msa0123200 AT5G18270.1 48.438 192 88 4 10 195 21 207 4.09e-55 181
Msa0123200 AT5G66300.1 53.704 162 67 4 4 159 6 165 4.17e-55 180
Msa0123200 AT5G18270.2 48.438 192 88 4 10 195 21 207 5.29e-55 181
Msa0123200 AT4G28530.2 53.448 174 28 3 1 158 1 137 1.10e-54 179
Msa0123200 AT3G04070.2 48.235 170 74 2 1 156 1 170 2.80e-54 179
Msa0123200 AT1G33280.1 39.510 286 141 10 8 271 6 281 1.39e-53 176
Msa0123200 AT3G29035.1 54.605 152 61 2 10 155 24 173 1.72e-53 176
Msa0123200 AT3G04060.1 54.902 153 62 3 10 156 20 171 3.47e-53 176
Msa0123200 AT4G10350.1 54.487 156 62 4 8 156 7 160 6.34e-53 176
Msa0123200 AT1G01720.1 40.870 230 118 5 10 224 7 233 3.20e-52 172
Msa0123200 AT5G62380.2 47.594 187 87 5 8 186 5 188 3.72e-52 174
Msa0123200 AT5G62380.1 47.594 187 87 5 8 186 5 188 3.72e-52 174
Msa0123200 AT3G04070.1 44.086 186 74 2 1 156 1 186 9.18e-52 173
Msa0123200 AT1G71930.2 52.597 154 66 3 8 156 7 158 1.16e-51 172
Msa0123200 AT1G71930.1 52.597 154 66 3 8 156 7 158 1.16e-51 172
Msa0123200 AT3G17730.1 46.703 182 87 4 8 183 4 181 3.37e-51 168
Msa0123200 AT3G03200.1 43.902 205 100 5 8 203 4 202 4.24e-51 174
Msa0123200 AT5G17260.1 48.256 172 80 3 8 172 4 173 5.67e-51 174
Msa0123200 AT1G54330.1 56.291 151 61 3 9 156 5 153 8.95e-51 169
Msa0123200 AT1G61110.1 48.045 179 73 4 1 160 4 181 9.93e-51 169
Msa0123200 AT3G61910.1 43.655 197 86 5 8 183 9 201 3.97e-49 166
Msa0123200 AT1G79580.3 51.316 152 69 3 9 156 16 166 3.99e-49 166
Msa0123200 AT1G79580.5 51.316 152 69 3 9 156 16 166 3.99e-49 166
Msa0123200 AT1G79580.4 51.316 152 69 3 9 156 16 166 3.99e-49 166
Msa0123200 AT1G79580.2 51.316 152 69 3 9 156 16 166 3.99e-49 166
Msa0123200 AT1G79580.1 51.316 152 69 3 9 156 16 166 3.99e-49 166
Msa0123200 AT1G65910.1 52.795 161 66 4 8 161 4 161 1.16e-48 171
Msa0123200 AT2G46770.1 44.379 169 72 3 8 156 14 180 7.03e-48 163
Msa0123200 AT5G08790.1 49.057 159 69 2 10 159 7 162 8.34e-48 160
Msa0123200 AT3G15500.1 49.390 164 73 3 1 156 1 162 1.00e-47 161
Msa0123200 AT1G52890.1 51.316 152 68 2 9 156 13 162 1.57e-47 161
Msa0123200 AT4G27410.2 46.286 175 84 4 1 167 1 173 2.24e-47 160
Msa0123200 AT1G69490.1 45.860 157 75 2 8 156 7 161 2.75e-47 159
Msa0123200 AT1G32770.1 37.900 219 110 5 8 202 14 230 3.07e-47 161
Msa0123200 AT1G77450.1 49.057 159 69 3 7 156 5 160 3.15e-47 158
Msa0123200 AT5G63790.1 48.750 160 70 2 9 159 49 205 3.19e-47 160
Msa0123200 AT5G63790.2 48.750 160 70 2 9 159 59 215 3.45e-47 160
Msa0123200 AT3G15510.1 38.426 216 103 4 14 209 21 226 5.46e-47 161
Msa0123200 AT1G33060.2 52.597 154 65 3 9 156 23 174 2.62e-46 164
Msa0123200 AT1G33060.1 52.597 154 65 3 9 156 23 174 2.76e-46 164
Msa0123200 AT3G10480.1 50.318 157 69 3 7 156 24 178 2.88e-46 161
Msa0123200 AT3G10490.1 48.148 162 75 3 2 156 19 178 3.05e-46 155
Msa0123200 AT5G04410.1 49.045 157 72 3 9 159 8 162 3.62e-46 163
Msa0123200 AT5G46590.1 36.546 249 125 7 8 236 4 239 4.11e-46 156
Msa0123200 AT4G17980.1 37.903 248 132 5 8 242 4 242 1.20e-45 154
Msa0123200 AT4G35580.1 53.247 154 64 3 9 156 8 159 1.59e-45 160
Msa0123200 AT4G35580.3 53.247 154 64 3 9 156 8 159 2.32e-45 160
Msa0123200 AT5G13180.1 47.742 155 75 2 10 161 14 165 2.43e-45 153
Msa0123200 AT4G35580.2 53.247 154 64 3 9 156 8 159 2.53e-45 160
Msa0123200 AT4G17980.2 37.903 248 132 5 8 242 4 242 3.68e-45 154
Msa0123200 AT3G10480.2 51.282 156 68 4 7 156 24 177 3.77e-45 158
Msa0123200 AT3G10490.2 48.148 162 75 3 2 156 19 178 6.41e-45 157
Msa0123200 AT5G39820.1 38.095 189 91 2 12 174 22 210 9.07e-45 154
Msa0123200 AT1G32510.1 38.723 235 118 7 6 225 2 225 2.00e-44 152
Msa0123200 AT1G26870.1 34.413 247 127 4 10 234 16 249 9.81e-44 154
Msa0123200 AT5G46590.2 51.515 132 61 2 8 137 4 134 3.03e-43 149
Msa0123200 AT3G10500.1 48.052 154 72 3 9 156 8 159 3.11e-43 155
Msa0123200 AT4G27410.3 42.188 192 84 5 1 167 1 190 4.29e-43 149
Msa0123200 AT2G33480.2 46.795 156 76 3 10 163 15 165 7.56e-43 147
Msa0123200 AT2G43000.1 39.286 196 103 5 12 201 20 205 1.09e-42 147
Msa0123200 AT2G33480.1 46.203 158 76 3 10 163 15 167 1.37e-42 147
Msa0123200 AT5G24590.2 43.407 182 96 3 8 183 11 191 1.66e-42 151
Msa0123200 AT1G56010.1 38.596 228 115 5 58 274 1 214 2.81e-42 145
Msa0123200 AT3G10480.3 41.579 190 69 3 7 156 24 211 1.92e-40 147
Msa0123200 AT3G49530.2 45.455 154 77 3 9 156 12 164 2.72e-40 144
Msa0123200 AT3G49530.1 45.455 154 77 3 9 156 12 164 4.40e-40 145
Msa0123200 AT2G02450.1 44.304 158 81 3 12 165 53 207 8.95e-40 142
Msa0123200 AT3G12977.2 60.748 107 35 3 55 156 10 114 1.01e-39 138
Msa0123200 AT2G02450.2 44.304 158 81 3 12 165 53 207 1.13e-39 143
Msa0123200 AT1G52880.1 45.342 161 72 3 14 159 21 180 3.98e-39 139
Msa0123200 AT2G27300.1 44.898 147 75 3 8 153 12 153 7.39e-38 136
Msa0123200 AT5G61430.2 60.000 105 34 3 58 156 1 103 5.36e-37 132
Msa0123200 AT2G17040.1 34.632 231 136 6 12 229 8 236 1.49e-36 131
Msa0123200 AT5G09330.5 43.791 153 78 3 10 156 6 156 1.59e-36 135
Msa0123200 AT5G09330.2 43.791 153 78 3 10 156 6 156 1.59e-36 135
Msa0123200 AT5G09330.4 43.791 153 78 3 10 156 6 156 1.59e-36 135
Msa0123200 AT5G09330.3 43.791 153 78 3 10 156 6 156 1.59e-36 135
Msa0123200 AT5G09330.1 43.791 153 78 3 10 156 6 156 1.59e-36 135
Msa0123200 AT1G34180.3 40.764 157 85 3 6 156 12 166 3.69e-36 134
Msa0123200 AT1G34180.1 41.722 151 80 3 12 156 18 166 1.46e-35 134
Msa0123200 AT1G34190.1 41.722 151 80 3 12 156 18 166 1.52e-35 134
Msa0123200 AT3G12910.1 36.522 230 122 7 12 220 23 249 1.62e-35 129
Msa0123200 AT4G10350.2 57.798 109 37 4 55 156 7 113 1.38e-34 127
Msa0123200 AT1G34180.4 37.870 169 85 3 6 156 12 178 4.43e-34 129
Msa0123200 AT1G32870.2 43.902 164 80 4 1 156 1 160 1.44e-33 128
Msa0123200 AT1G34180.2 38.650 163 80 3 12 156 18 178 1.45e-33 128
Msa0123200 AT1G32870.1 43.902 164 80 4 1 156 1 160 1.83e-33 127
Msa0123200 AT5G64060.1 39.610 154 85 3 9 156 5 156 2.39e-33 125
Msa0123200 AT1G32870.3 43.902 164 80 4 1 156 37 196 3.14e-33 127
Msa0123200 AT5G04395.1 42.384 151 73 2 1 137 19 169 1.10e-32 119
Msa0123200 AT5G22290.1 33.663 202 118 6 4 193 10 207 7.55e-32 120
Msa0123200 AT3G44290.2 39.860 143 80 3 12 153 16 153 5.61e-31 115
Msa0123200 AT3G44290.1 39.860 143 80 3 12 153 16 153 2.74e-30 116
Msa0123200 AT3G44350.2 35.349 215 117 8 6 206 1 207 2.25e-29 111
Msa0123200 AT4G01550.1 38.667 150 87 4 13 158 7 155 1.10e-28 114
Msa0123200 AT5G64530.1 33.529 170 83 3 9 160 2 159 5.33e-28 106
Msa0123200 AT2G18060.2 50.000 106 45 5 88 187 2 105 1.94e-27 107
Msa0123200 AT3G44350.1 41.176 136 74 3 6 136 1 135 8.97e-27 102
Msa0123200 AT2G33480.3 48.077 104 48 2 64 163 9 110 2.83e-26 102
Msa0123200 AT5G22380.1 34.682 173 100 5 13 173 8 179 6.29e-26 102
Msa0123200 AT4G01520.1 36.129 155 91 6 11 159 5 157 8.14e-26 103
Msa0123200 AT5G64530.2 37.984 129 68 2 9 137 2 118 1.09e-25 99.8
Msa0123200 AT1G02230.1 37.908 153 87 5 11 158 4 153 7.33e-25 102
Msa0123200 AT4G01540.3 35.948 153 90 6 13 159 7 157 1.29e-24 102
Msa0123200 AT4G01540.4 35.948 153 90 6 13 159 7 157 1.60e-24 101
Msa0123200 AT4G01540.1 35.948 153 90 6 13 159 7 157 1.66e-24 102
Msa0123200 AT4G01540.2 35.948 153 90 6 13 159 7 157 1.91e-24 102
Msa0123200 AT3G04420.2 33.775 151 93 4 11 157 4 151 3.73e-23 96.3
Msa0123200 AT3G04420.1 33.775 151 93 4 11 157 4 151 8.44e-23 96.3
Msa0123200 AT1G01010.1 30.568 229 130 9 13 219 6 227 6.91e-21 92.0
Msa0123200 AT2G43000.2 40.541 111 57 3 71 175 1 108 1.19e-19 84.7
Msa0123200 AT3G10490.4 53.165 79 30 2 83 156 2 78 2.11e-19 87.0
Msa0123200 AT3G10490.3 53.165 79 30 2 83 156 2 78 2.11e-19 87.0
Msa0123200 AT1G02250.1 32.680 153 95 4 11 158 4 153 3.13e-18 84.0
Msa0123200 AT1G02220.1 31.126 151 94 5 11 157 4 148 1.28e-17 82.4
Msa0123200 AT3G04430.1 36.957 138 73 5 16 141 6 141 1.85e-17 79.0
Msa0123200 AT5G50820.1 37.226 137 62 6 10 137 17 138 3.37e-16 75.5
Msa0123200 AT3G56530.1 27.815 151 102 4 9 154 51 199 5.88e-16 77.0
Msa0123200 AT5G14000.2 31.579 133 85 3 7 137 12 140 7.97e-14 68.2
Msa0123200 AT5G14000.1 31.579 133 85 3 7 137 12 140 4.46e-13 67.0
Msa0123200 AT1G28470.1 28.814 177 105 6 9 168 76 248 3.87e-12 65.9
Msa0123200 AT5G22290.2 34.234 111 63 4 89 193 2 108 6.65e-12 64.3

Find 105 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCTTGTGGACTTAATT+TGG 0.161042 1_3:+50174656 None:intergenic
TTGGATAGGTAGTGGGTTTA+TGG 0.178084 1_3:+50177882 None:intergenic
GATTCATCAAAGAATTATTT+TGG 0.212245 1_3:+50174523 None:intergenic
TAGGGTTTCATTTGGTTATT+GGG 0.220851 1_3:-50174139 Msa0123200:three_prime_UTR
TATATAGTGTTTGGCTTCAT+AGG 0.225282 1_3:-50174231 Msa0123200:three_prime_UTR
TTAGGGTTTCATTTGGTTAT+TGG 0.232819 1_3:-50174140 Msa0123200:three_prime_UTR
TGTACATATTATTATGTATA+TGG 0.252572 1_3:-50174301 Msa0123200:three_prime_UTR
TTGGCATGGTTTGGTTGGTT+AGG 0.262175 1_3:+50174613 None:intergenic
ACGTGCATGATTGGGATTAT+AGG 0.305437 1_3:-50174201 Msa0123200:three_prime_UTR
CCATACCCATCATCACATTT+AGG 0.320248 1_3:+50174444 None:intergenic
TGAAACCTGTGGCATATTTA+CGG 0.322901 1_3:+50175755 None:intergenic
AGTGTTCAGTGTGATTGGTT+AGG 0.323517 1_3:-50174158 Msa0123200:three_prime_UTR
AAGATGAGAAAGAAGCAAAT+TGG 0.341217 1_3:+50174580 None:intergenic
TGCGAGCCTTGGCAACTTCC+TGG 0.343644 1_3:-50177661 Msa0123200:intron
GTTGGATCATGCATGAGTTT+AGG 0.344473 1_3:-50175588 Msa0123200:CDS
TTTCATTTGGTTATTGGGAG+GGG 0.344683 1_3:-50174134 Msa0123200:three_prime_UTR
GCCAGATGTTGTAGCCCTAT+TGG 0.346502 1_3:+50175729 None:intergenic
GGGCATGCCACGTGCATGAT+TGG 0.350732 1_3:-50174210 Msa0123200:three_prime_UTR
TGGCATGGTTTGGTTGGTTA+GGG 0.355057 1_3:+50174614 None:intergenic
GGGCTACAACATCTGGCTAT+TGG 0.360132 1_3:-50175723 Msa0123200:CDS
TTCATTTGGTTATTGGGAGG+GGG 0.361369 1_3:-50174133 Msa0123200:three_prime_UTR
GTGTTCAGTGTGATTGGTTA+GGG 0.362556 1_3:-50174157 Msa0123200:three_prime_UTR
TTATCCTAGTGATGAAGAAT+TGG 0.381724 1_3:-50177761 Msa0123200:CDS
AGTGGGTTTATGGATATATA+TGG 0.387627 1_3:+50177892 None:intergenic
TTTCAAGTGTTCAGTGTGAT+TGG 0.389446 1_3:-50174163 Msa0123200:three_prime_UTR
TGGTTTGGTTGGTTAGGGAT+GGG 0.392064 1_3:+50174619 None:intergenic
GACATTGATTAGCATTTGTA+GGG 0.392345 1_3:-50174105 Msa0123200:three_prime_UTR
GGTTTGGTTGGTTAGGGATG+GGG 0.395087 1_3:+50174620 None:intergenic
ACCAATAGGGCTACAACATC+TGG 0.402504 1_3:-50175730 Msa0123200:CDS
ATGGTTTGGTTGGTTAGGGA+TGG 0.404562 1_3:+50174618 None:intergenic
CCACAGGTTTCAGAACCAAT+AGG 0.406365 1_3:-50175744 Msa0123200:CDS
CGTACCTTAGGTGGCATATG+TGG 0.408299 1_3:+50175556 None:intergenic
TCTGGCTATTGGAAAGCAAC+AGG 0.412419 1_3:-50175712 Msa0123200:CDS
TGATTGGTTAGGGTTTCATT+TGG 0.414632 1_3:-50174147 Msa0123200:three_prime_UTR
GCAAATTGGTTGTAACCAAT+TGG 0.418177 1_3:+50174594 None:intergenic
AGACATTGATTAGCATTTGT+AGG 0.419518 1_3:-50174106 Msa0123200:three_prime_UTR
CCTACAACCTCATGTGTGAT+TGG 0.419579 1_3:+50175667 None:intergenic
ATTAGTCCTAAATGTGATGA+TGG 0.423906 1_3:-50174450 Msa0123200:CDS
GCTCCAAATGGAATCAAAAC+AGG 0.425014 1_3:-50175610 Msa0123200:CDS
TGTAACCAATTGGCATGGTT+TGG 0.428152 1_3:+50174604 None:intergenic
GGAAAACTCTAGTCTTCTAT+AGG 0.429096 1_3:-50175639 Msa0123200:CDS
TGTAAGCTAGGGAGAGAAAG+AGG 0.432554 1_3:+50177840 None:intergenic
TTGTGTAGAGTATTTCATAA+AGG 0.437100 1_3:-50174696 Msa0123200:CDS
GTTTCATTTGGTTATTGGGA+GGG 0.437465 1_3:-50174135 Msa0123200:three_prime_UTR
CTAGCTTACAAAATTAATCA+TGG 0.444500 1_3:-50177827 Msa0123200:exon
GGTTTCATTTGGTTATTGGG+AGG 0.448742 1_3:-50174136 Msa0123200:three_prime_UTR
CTCATTTAAATGACAATGGT+GGG 0.454810 1_3:+50174548 None:intergenic
GGTTCTTATCTCTCAAGTTA+CGG 0.467662 1_3:-50174280 Msa0123200:three_prime_UTR
CACAGGTTTCAGAACCAATA+GGG 0.469537 1_3:-50175743 Msa0123200:CDS
CCAATCACACATGAGGTTGT+AGG 0.470021 1_3:-50175667 Msa0123200:CDS
ACCAACCAAACCATGCCAAT+TGG 0.471896 1_3:-50174609 Msa0123200:CDS
TCTCAAGTTACGGAAATTTG+TGG 0.472207 1_3:-50174270 Msa0123200:three_prime_UTR
TTTGTTGATTACAGGAGGAC+TGG 0.474402 1_3:-50174722 Msa0123200:intron
GGCATGCCACGTGCATGATT+GGG 0.477476 1_3:-50174209 Msa0123200:three_prime_UTR
CTAGGATAAAATCGAAAGCC+AGG 0.494510 1_3:+50177775 None:intergenic
ATGTAATCATATATAGTGTT+TGG 0.501160 1_3:-50174240 Msa0123200:three_prime_UTR
ATATAGTGTTTGGCTTCATA+GGG 0.512678 1_3:-50174230 Msa0123200:three_prime_UTR
CGTGACCGTAAATATGCCAC+AGG 0.515429 1_3:-50175760 Msa0123200:CDS
GATCATGCATGAGTTTAGGT+TGG 0.515996 1_3:-50175584 Msa0123200:CDS
CACGAATGAGGATGTTCTCA+AGG 0.517292 1_3:-50177713 Msa0123200:CDS
CCTAAATGTGATGATGGGTA+TGG 0.517504 1_3:-50174444 Msa0123200:CDS
ACTTGCATACATGCGAGCCT+TGG 0.522819 1_3:-50177672 Msa0123200:CDS
TCTCATTTAAATGACAATGG+TGG 0.533934 1_3:+50174547 None:intergenic
CTAAACTCAACGCAACTGAA+TGG 0.538893 1_3:-50175798 Msa0123200:CDS
TATAGGAATAGAGCTCCAAA+TGG 0.549894 1_3:-50175622 Msa0123200:CDS
GGATGTTCTCAAGGGTACCT+TGG 0.551085 1_3:-50177704 Msa0123200:CDS
TGTTCTCAAGGGTACCTTGG+AGG 0.553598 1_3:-50177701 Msa0123200:CDS
ACCAATTGGCATGGTTTGGT+TGG 0.553756 1_3:+50174608 None:intergenic
TAGCTTACAAAATTAATCAT+GGG 0.557425 1_3:-50177826 Msa0123200:exon
GGTTCTCATTTAAATGACAA+TGG 0.558939 1_3:+50174544 None:intergenic
CACATGAGGTTGTAGGAATG+AGG 0.561923 1_3:-50175660 Msa0123200:CDS
GTACCTTAGGTGGCATATGT+GGG 0.562749 1_3:+50175557 None:intergenic
TTTATGGATATATATGGTAG+AGG 0.568550 1_3:+50177898 None:intergenic
CAAATGGAATCAAAACAGGT+TGG 0.568983 1_3:-50175606 Msa0123200:CDS
ATAGTCTCATACATTTCTTG+TGG 0.571583 1_3:+50174645 None:intergenic
TTGGTTGTAACCAATTGGCA+TGG 0.574097 1_3:+50174599 None:intergenic
TTGTTGATTACAGGAGGACT+GGG 0.579581 1_3:-50174721 Msa0123200:intron
AGGACCAATTCTTCATCACT+AGG 0.581995 1_3:+50177757 None:intergenic
ATCATGGGTCTTAGAGATGT+CGG 0.583109 1_3:-50177811 Msa0123200:CDS
TGGTGTGGCCTCATCATACA+TGG 0.584875 1_3:-50174385 Msa0123200:CDS
TTAGTCCTAAATGTGATGAT+GGG 0.591667 1_3:-50174449 Msa0123200:CDS
GACCCCACATATGCCACCTA+AGG 0.595376 1_3:-50175560 Msa0123200:intron
CATGGAAGGAATGAGATTCG+AGG 0.602165 1_3:-50174367 Msa0123200:CDS
TATATACCAGGAAGTTGCCA+AGG 0.604137 1_3:+50177655 None:intergenic
TAGGATAAAATCGAAAGCCA+GGG 0.604860 1_3:+50177776 None:intergenic
ATGCAAGTCAATTTCCTCCA+AGG 0.605909 1_3:+50177687 None:intergenic
CGAGGTTGATAATAATAGCA+TGG 0.613330 1_3:-50174349 Msa0123200:CDS
CATTGATTAGCATTTGTAGG+GGG 0.617164 1_3:-50174103 Msa0123200:three_prime_UTR
CTGGCTATTGGAAAGCAACA+GGG 0.629233 1_3:-50175711 Msa0123200:CDS
AGCAACAGGGAAGGATCGAA+CGG 0.629587 1_3:-50175698 Msa0123200:CDS
CTAAATGTGATGATGGGTAT+GGG 0.629662 1_3:-50174443 Msa0123200:CDS
CATTCCTTCCATGTATGATG+AGG 0.630566 1_3:+50174377 None:intergenic
GTGGCCTCATCATACATGGA+AGG 0.630806 1_3:-50174381 Msa0123200:CDS
GGATATATATGGTAGAGGTG+TGG 0.633029 1_3:+50177903 None:intergenic
CTATTGGAAAGCAACAGGGA+AGG 0.639243 1_3:-50175707 Msa0123200:CDS
TACCTTAGGTGGCATATGTG+GGG 0.640655 1_3:+50175558 None:intergenic
ACGAATGAGGATGTTCTCAA+GGG 0.657372 1_3:-50177712 Msa0123200:CDS
ACATTGATTAGCATTTGTAG+GGG 0.657613 1_3:-50174104 Msa0123200:three_prime_UTR
CCTATTGGTTCTGAAACCTG+TGG 0.666923 1_3:+50175744 None:intergenic
GATTTGGAAGATCATCATGA+TGG 0.674805 1_3:-50174405 Msa0123200:CDS
GGAAGATCATCATGATGGTG+TGG 0.675111 1_3:-50174400 Msa0123200:CDS
AGGATAAAATCGAAAGCCAG+GGG 0.675897 1_3:+50177777 None:intergenic
GTATGATCCAATCACACATG+AGG 0.679623 1_3:-50175674 Msa0123200:CDS
TATAATCCCAATCATGCACG+TGG 0.713373 1_3:+50174203 None:intergenic
GGATAAAATCGAAAGCCAGG+GGG 0.720221 1_3:+50177778 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATATATTTTTGAAATTT+TGG + chr1_3:50174164-50174183 None:intergenic 10.0%
!! AATAAAATAAAAGAGAAAAT+TGG - chr1_3:50174719-50174738 Msa0123200:intron 10.0%
!!! TTTTTTTTTTTTTTTTTCAG+AGG - chr1_3:50176200-50176219 Msa0123200:intron 10.0%
!! TTAGGTATAAATAAAAAAAT+TGG - chr1_3:50176677-50176696 Msa0123200:intron 10.0%
!!! ATATTTTTGAAATTTTGGAT+AGG + chr1_3:50174159-50174178 None:intergenic 15.0%
!! TTAACCATATAATAATTCTT+TGG - chr1_3:50174460-50174479 Msa0123200:CDS 15.0%
!! TTAACCAAAGAATTATTATA+TGG + chr1_3:50174467-50174486 None:intergenic 15.0%
!! TCAACTCATAAATAAATATA+AGG + chr1_3:50174576-50174595 None:intergenic 15.0%
!! AAAGAAGAAGAAATAATTAA+AGG - chr1_3:50174643-50174662 Msa0123200:CDS 15.0%
!! AGATCATAATAATATTGTTT+GGG + chr1_3:50174953-50174972 None:intergenic 15.0%
!! AATTTAAGTGTATACAAAAT+AGG - chr1_3:50175445-50175464 Msa0123200:intron 15.0%
!! AAAAAAATTATCGTTATTGA+TGG - chr1_3:50175540-50175559 Msa0123200:intron 15.0%
!! CAATAATGACAAAAATAATT+TGG + chr1_3:50176013-50176032 None:intergenic 15.0%
!!! TTATATGTGTAGTTTTTATT+AGG - chr1_3:50176659-50176678 Msa0123200:intron 15.0%
!!! TGTTTTAATGTTTTTTGAAA+TGG + chr1_3:50176887-50176906 None:intergenic 15.0%
!! TAAATCTCTTAATTAAGATT+TGG + chr1_3:50177135-50177154 None:intergenic 15.0%
!!! CTTTAAAAATCTAGTTATTT+TGG - chr1_3:50177246-50177265 Msa0123200:intron 15.0%
!! TGTACATATTATTATGTATA+TGG - chr1_3:50177723-50177742 Msa0123200:CDS 15.0%
!!! ATGATTAATTTTGTAAGCTA+GGG + chr1_3:50174198-50174217 None:intergenic 20.0%
!! TAGCTTACAAAATTAATCAT+GGG - chr1_3:50174198-50174217 Msa0123200:three_prime_UTR 20.0%
!!! TTTTTTTGTAAAGGTAATGA+AGG + chr1_3:50174290-50174309 None:intergenic 20.0%
!! ATGGTTAAATAAGCTAATTA+AGG + chr1_3:50174448-50174467 None:intergenic 20.0%
!! TACAACATCATTAATTAACT+TGG - chr1_3:50174510-50174529 Msa0123200:CDS 20.0%
!!! ATATTTGCCTTTTTAAAAGA+AGG - chr1_3:50174606-50174625 Msa0123200:CDS 20.0%
!!! AAAGTTTCCTTCTTTTAAAA+AGG + chr1_3:50174616-50174635 None:intergenic 20.0%
!!! TTTTTAAAAGAAGGAAACTT+TGG - chr1_3:50174615-50174634 Msa0123200:CDS 20.0%
!! ATAAAAGAGAAAATTGGTTA+TGG - chr1_3:50174725-50174744 Msa0123200:intron 20.0%
!! TAAAAGAGAAAATTGGTTAT+GGG - chr1_3:50174726-50174745 Msa0123200:intron 20.0%
!! ACAAAAGCAATTATGTAAAA+AGG + chr1_3:50174883-50174902 None:intergenic 20.0%
!! GAGATCATAATAATATTGTT+TGG + chr1_3:50174954-50174973 None:intergenic 20.0%
!! ATTAATCAAATGAAAGTGAA+AGG + chr1_3:50175079-50175098 None:intergenic 20.0%
!! TTATGTTACAATTTATGACA+AGG + chr1_3:50175311-50175330 None:intergenic 20.0%
!!! GTATATTTTGTAGACTTTAA+TGG + chr1_3:50175508-50175527 None:intergenic 20.0%
!!! ATTAATCAAACATTAGCTTA+TGG - chr1_3:50175700-50175719 Msa0123200:CDS 20.0%
!! TAACATGAAAAATTGCTTAA+TGG + chr1_3:50175772-50175791 None:intergenic 20.0%
!!! AAACTCTTCTTTTTGTAAAT+GGG - chr1_3:50175796-50175815 Msa0123200:CDS 20.0%
!!! TTTTTTTTTTTTTTCAGAGG+TGG - chr1_3:50176203-50176222 Msa0123200:intron 20.0%
!!! AAAGCTAGCTATTTAAAATA+AGG - chr1_3:50177029-50177048 Msa0123200:intron 20.0%
!! AGAATAGAATATTTCATAAG+TGG - chr1_3:50177179-50177198 Msa0123200:intron 20.0%
!!! GATTCATCAAAGAATTATTT+TGG + chr1_3:50177504-50177523 None:intergenic 20.0%
!! ATGTAATCATATATAGTGTT+TGG - chr1_3:50177784-50177803 Msa0123200:CDS 20.0%
! TTTATGGATATATATGGTAG+AGG + chr1_3:50174129-50174148 None:intergenic 25.0%
!! CATGATTAATTTTGTAAGCT+AGG + chr1_3:50174199-50174218 None:intergenic 25.0%
! CTAGCTTACAAAATTAATCA+TGG - chr1_3:50174197-50174216 Msa0123200:three_prime_UTR 25.0%
!!! CATTCGTGATTTTTTTGTAA+AGG + chr1_3:50174299-50174318 None:intergenic 25.0%
! TTACAAAAAAATCACGAATG+AGG - chr1_3:50174299-50174318 Msa0123200:three_prime_UTR 25.0%
!! TATAAGAGCATATATATACC+AGG + chr1_3:50174384-50174403 None:intergenic 25.0%
! AAAAGAGAAAATTGGTTATG+GGG - chr1_3:50174727-50174746 Msa0123200:intron 25.0%
! TCAATGATTAAGGCTATTAA+TGG - chr1_3:50174792-50174811 Msa0123200:intron 25.0%
!! TTTTCTTTATGCGGTTAAAA+CGG - chr1_3:50175015-50175034 Msa0123200:intron 25.0%
! AATATGACTTAAATACATGC+AGG + chr1_3:50175173-50175192 None:intergenic 25.0%
!! ATCTTTCACACAAATGTTTT+GGG - chr1_3:50175230-50175249 Msa0123200:intron 25.0%
!! TCTTTTGTGAATGATAATTG+AGG - chr1_3:50175274-50175293 Msa0123200:intron 25.0%
! TTACAATTTATGACAAGGTA+TGG + chr1_3:50175306-50175325 None:intergenic 25.0%
! ATACACTATCAAAGCAAAAT+AGG - chr1_3:50175422-50175441 Msa0123200:intron 25.0%
!! ATCGTTATTGATGGTAAAAT+TGG - chr1_3:50175549-50175568 Msa0123200:intron 25.0%
!! CAAACTCTTCTTTTTGTAAA+TGG - chr1_3:50175795-50175814 Msa0123200:CDS 25.0%
!! AACTCTTCTTTTTGTAAATG+GGG - chr1_3:50175797-50175816 Msa0123200:CDS 25.0%
!! AGAGATAATAGGTCAATTTT+TGG + chr1_3:50176161-50176180 None:intergenic 25.0%
! AGTAAAAATAAACGTACCTT+AGG + chr1_3:50176483-50176502 None:intergenic 25.0%
! ACGTTTGAAAATTGATTGAA+AGG + chr1_3:50176515-50176534 None:intergenic 25.0%
! ATGTAATTGCCACATAATAA+AGG - chr1_3:50176588-50176607 Msa0123200:intron 25.0%
! TGTAATTGCCACATAATAAA+GGG - chr1_3:50176589-50176608 Msa0123200:intron 25.0%
! AAGATAAAATATCTCCATCA+AGG + chr1_3:50176824-50176843 None:intergenic 25.0%
! TTAAAATAAGGTGAGAAAGT+TGG - chr1_3:50177041-50177060 Msa0123200:intron 25.0%
!!! TTAGCATCTTTTTGAGATAT+AGG - chr1_3:50177078-50177097 Msa0123200:intron 25.0%
!! ATTGTTGTCATTGATTGAAT+TGG - chr1_3:50177154-50177173 Msa0123200:intron 25.0%
!! AAATGATTCTCACGTATTTT+AGG - chr1_3:50177207-50177226 Msa0123200:intron 25.0%
!!! TTCAAACTTTTGTTGATTAC+AGG - chr1_3:50177294-50177313 Msa0123200:intron 25.0%
!! TTGTGTAGAGTATTTCATAA+AGG - chr1_3:50177328-50177347 Msa0123200:intron 25.0%
!! GAATCTTCTTCAATTTTCTA+AGG - chr1_3:50177519-50177538 Msa0123200:intron 25.0%
! AGTGGGTTTATGGATATATA+TGG + chr1_3:50174135-50174154 None:intergenic 30.0%
! TGAAATTTTGGATAGGTAGT+GGG + chr1_3:50174152-50174171 None:intergenic 30.0%
! TTGAAATTTTGGATAGGTAG+TGG + chr1_3:50174153-50174172 None:intergenic 30.0%
TTATCCTAGTGATGAAGAAT+TGG - chr1_3:50174263-50174282 Msa0123200:three_prime_UTR 30.0%
AATTGACATTCACAAACACA+TGG - chr1_3:50174485-50174504 Msa0123200:CDS 30.0%
GTTCAGTTCTTCAATGATTA+AGG - chr1_3:50174782-50174801 Msa0123200:intron 30.0%
!! TCTTCTTGCTTTTCTTTATG+CGG - chr1_3:50175006-50175025 Msa0123200:intron 30.0%
!! CTCTAGGTATTTTACTTTTG+TGG - chr1_3:50175041-50175060 Msa0123200:intron 30.0%
GTGAAAGATCAAATGTTGTA+TGG + chr1_3:50175219-50175238 None:intergenic 30.0%
! GATCTTTCACACAAATGTTT+TGG - chr1_3:50175229-50175248 Msa0123200:intron 30.0%
AGAAAGTCGTCATACAAAAT+AGG - chr1_3:50175387-50175406 Msa0123200:intron 30.0%
!! TTTCAAGTTTCCAATTGAGA+CGG + chr1_3:50175921-50175940 None:intergenic 30.0%
AATGGAAAAACATGTGACTT+AGG + chr1_3:50176133-50176152 None:intergenic 30.0%
! AAGTCACATGTTTTTCCATT+TGG - chr1_3:50176133-50176152 Msa0123200:intron 30.0%
TGCATGAATAGAGAGATAAT+AGG + chr1_3:50176172-50176191 None:intergenic 30.0%
AAAAATAAACGTACCTTAGG+TGG + chr1_3:50176480-50176499 None:intergenic 30.0%
! TTTTCAAACGTGACAATGAT+AGG - chr1_3:50176524-50176543 Msa0123200:intron 30.0%
! AAGATTACAACTTGCTTCTT+AGG + chr1_3:50176706-50176725 None:intergenic 30.0%
GAACTACTATTATACCTTGA+TGG - chr1_3:50176807-50176826 Msa0123200:intron 30.0%
!! AAACTTTTGTTGATTACAGG+AGG - chr1_3:50177297-50177316 Msa0123200:intron 30.0%
CATTTCTTGTGGACTTAATT+TGG + chr1_3:50177371-50177390 None:intergenic 30.0%
ATAGTCTCATACATTTCTTG+TGG + chr1_3:50177382-50177401 None:intergenic 30.0%
AAGATGAGAAAGAAGCAAAT+TGG + chr1_3:50177447-50177466 None:intergenic 30.0%
CTCATTTAAATGACAATGGT+GGG + chr1_3:50177479-50177498 None:intergenic 30.0%
TCTCATTTAAATGACAATGG+TGG + chr1_3:50177480-50177499 None:intergenic 30.0%
GGTTCTCATTTAAATGACAA+TGG + chr1_3:50177483-50177502 None:intergenic 30.0%
ATTAGTCCTAAATGTGATGA+TGG - chr1_3:50177574-50177593 Msa0123200:intron 30.0%
TTAGTCCTAAATGTGATGAT+GGG - chr1_3:50177575-50177594 Msa0123200:intron 30.0%
! TATATAGTGTTTGGCTTCAT+AGG - chr1_3:50177793-50177812 Msa0123200:CDS 30.0%
! ATATAGTGTTTGGCTTCATA+GGG - chr1_3:50177794-50177813 Msa0123200:CDS 30.0%
TTAGGGTTTCATTTGGTTAT+TGG - chr1_3:50177884-50177903 Msa0123200:five_prime_UTR 30.0%
TAGGGTTTCATTTGGTTATT+GGG - chr1_3:50177885-50177904 Msa0123200:five_prime_UTR 30.0%
! AGACATTGATTAGCATTTGT+AGG - chr1_3:50177918-50177937 Msa0123200:five_prime_UTR 30.0%
! GACATTGATTAGCATTTGTA+GGG - chr1_3:50177919-50177938 Msa0123200:five_prime_UTR 30.0%
! ACATTGATTAGCATTTGTAG+GGG - chr1_3:50177920-50177939 Msa0123200:five_prime_UTR 30.0%
TAGGATAAAATCGAAAGCCA+GGG + chr1_3:50174251-50174270 None:intergenic 35.0%
!! ACCTATGCATGGTATTTTTG+GGG + chr1_3:50175890-50175909 None:intergenic 35.0%
! GACCTATGCATGGTATTTTT+GGG + chr1_3:50175891-50175910 None:intergenic 35.0%
! TGACCTATGCATGGTATTTT+TGG + chr1_3:50175892-50175911 None:intergenic 35.0%
GACTTAGGTAGGTAAAACAA+TGG + chr1_3:50176118-50176137 None:intergenic 35.0%
GAAAAACATGTGACTTAGGT+AGG + chr1_3:50176129-50176148 None:intergenic 35.0%
!!! GGTCAATTTTTGGTACCAAA+TGG + chr1_3:50176151-50176170 None:intergenic 35.0%
TGAAACCTGTGGCATATTTA+CGG + chr1_3:50176272-50176291 None:intergenic 35.0%
! GGAAAACTCTAGTCTTCTAT+AGG - chr1_3:50176385-50176404 Msa0123200:intron 35.0%
TATAGGAATAGAGCTCCAAA+TGG - chr1_3:50176402-50176421 Msa0123200:intron 35.0%
!!! CAACCTGTTTTGATTCCATT+TGG + chr1_3:50176420-50176439 None:intergenic 35.0%
CAAATGGAATCAAAACAGGT+TGG - chr1_3:50176418-50176437 Msa0123200:intron 35.0%
ATCACACTCCCTTTATTATG+TGG + chr1_3:50176600-50176619 None:intergenic 35.0%
ATTAAACCCTCACAAACCTT+AGG + chr1_3:50176627-50176646 None:intergenic 35.0%
AATGTCCATTTAGTAGTGTG+AGG - chr1_3:50176749-50176768 Msa0123200:intron 35.0%
AAATAAGGTGAGAAAGTTGG+AGG - chr1_3:50177044-50177063 Msa0123200:intron 35.0%
AGGAAAACAATGTGTATGTG+AGG - chr1_3:50177098-50177117 Msa0123200:intron 35.0%
!!! TGTGTATGTGAGGACTTTTT+TGG - chr1_3:50177108-50177127 Msa0123200:intron 35.0%
GCAAATTGGTTGTAACCAAT+TGG + chr1_3:50177433-50177452 None:intergenic 35.0%
!! CTAAATGTGATGATGGGTAT+GGG - chr1_3:50177581-50177600 Msa0123200:intron 35.0%
GATTTGGAAGATCATCATGA+TGG - chr1_3:50177619-50177638 Msa0123200:intron 35.0%
!! CGAGGTTGATAATAATAGCA+TGG - chr1_3:50177675-50177694 Msa0123200:CDS 35.0%
GGTTCTTATCTCTCAAGTTA+CGG - chr1_3:50177744-50177763 Msa0123200:CDS 35.0%
TCTCAAGTTACGGAAATTTG+TGG - chr1_3:50177754-50177773 Msa0123200:CDS 35.0%
! TTTCAAGTGTTCAGTGTGAT+TGG - chr1_3:50177861-50177880 Msa0123200:five_prime_UTR 35.0%
! TGATTGGTTAGGGTTTCATT+TGG - chr1_3:50177877-50177896 Msa0123200:five_prime_UTR 35.0%
GTTTCATTTGGTTATTGGGA+GGG - chr1_3:50177889-50177908 Msa0123200:five_prime_UTR 35.0%
TTTCATTTGGTTATTGGGAG+GGG - chr1_3:50177890-50177909 Msa0123200:five_prime_UTR 35.0%
! CATTGATTAGCATTTGTAGG+GGG - chr1_3:50177921-50177940 Msa0123200:five_prime_UTR 35.0%
GGATATATATGGTAGAGGTG+TGG + chr1_3:50174124-50174143 None:intergenic 40.0%
!! TTGGATAGGTAGTGGGTTTA+TGG + chr1_3:50174145-50174164 None:intergenic 40.0%
ATCATGGGTCTTAGAGATGT+CGG - chr1_3:50174213-50174232 Msa0123200:three_prime_UTR 40.0%
AGGATAAAATCGAAAGCCAG+GGG + chr1_3:50174250-50174269 None:intergenic 40.0%
CTAGGATAAAATCGAAAGCC+AGG + chr1_3:50174252-50174271 None:intergenic 40.0%
AGGACCAATTCTTCATCACT+AGG + chr1_3:50174270-50174289 None:intergenic 40.0%
ACGAATGAGGATGTTCTCAA+GGG - chr1_3:50174312-50174331 Msa0123200:three_prime_UTR 40.0%
ATGCAAGTCAATTTCCTCCA+AGG + chr1_3:50174340-50174359 None:intergenic 40.0%
TATATACCAGGAAGTTGCCA+AGG + chr1_3:50174372-50174391 None:intergenic 40.0%
CATGCTGCGAATATTCTGTA+AGG - chr1_3:50175622-50175641 Msa0123200:CDS 40.0%
ACCCCAAAAATACCATGCAT+AGG - chr1_3:50175886-50175905 Msa0123200:intron 40.0%
! GTCACTTTATCCGTCTCAAT+TGG - chr1_3:50175908-50175927 Msa0123200:intron 40.0%
CTAAACTCAACGCAACTGAA+TGG - chr1_3:50176226-50176245 Msa0123200:intron 40.0%
CACAGGTTTCAGAACCAATA+GGG - chr1_3:50176281-50176300 Msa0123200:intron 40.0%
GTATGATCCAATCACACATG+AGG - chr1_3:50176350-50176369 Msa0123200:intron 40.0%
GCTCCAAATGGAATCAAAAC+AGG - chr1_3:50176414-50176433 Msa0123200:intron 40.0%
GTTGGATCATGCATGAGTTT+AGG - chr1_3:50176436-50176455 Msa0123200:intron 40.0%
GATCATGCATGAGTTTAGGT+TGG - chr1_3:50176440-50176459 Msa0123200:intron 40.0%
ATGAAGCCTAAGGTTTGTGA+GGG - chr1_3:50176618-50176637 Msa0123200:intron 40.0%
TGGATCCTCACACTACTAAA+TGG + chr1_3:50176757-50176776 None:intergenic 40.0%
!! TCAAAGCGCATTAGCTTTAG+TGG + chr1_3:50176777-50176796 None:intergenic 40.0%
! TTTGTTGATTACAGGAGGAC+TGG - chr1_3:50177302-50177321 Msa0123200:intron 40.0%
! TTGTTGATTACAGGAGGACT+GGG - chr1_3:50177303-50177322 Msa0123200:intron 40.0%
TGTAACCAATTGGCATGGTT+TGG + chr1_3:50177423-50177442 None:intergenic 40.0%
TTGGTTGTAACCAATTGGCA+TGG + chr1_3:50177428-50177447 None:intergenic 40.0%
CCATACCCATCATCACATTT+AGG + chr1_3:50177583-50177602 None:intergenic 40.0%
!! CCTAAATGTGATGATGGGTA+TGG - chr1_3:50177580-50177599 Msa0123200:intron 40.0%
!!! ATGATGGGTATGGGTTTTTG+TGG - chr1_3:50177590-50177609 Msa0123200:intron 40.0%
!! TGATGGGTATGGGTTTTTGT+GGG - chr1_3:50177591-50177610 Msa0123200:intron 40.0%
! GTTTTTGTGGGACATGGATT+TGG - chr1_3:50177603-50177622 Msa0123200:intron 40.0%
CATTCCTTCCATGTATGATG+AGG + chr1_3:50177650-50177669 None:intergenic 40.0%
TATAATCCCAATCATGCACG+TGG + chr1_3:50177824-50177843 None:intergenic 40.0%
ACGTGCATGATTGGGATTAT+AGG - chr1_3:50177823-50177842 Msa0123200:exon 40.0%
! AGTGTTCAGTGTGATTGGTT+AGG - chr1_3:50177866-50177885 Msa0123200:five_prime_UTR 40.0%
! GTGTTCAGTGTGATTGGTTA+GGG - chr1_3:50177867-50177886 Msa0123200:five_prime_UTR 40.0%
GGTTTCATTTGGTTATTGGG+AGG - chr1_3:50177888-50177907 Msa0123200:five_prime_UTR 40.0%
TTCATTTGGTTATTGGGAGG+GGG - chr1_3:50177891-50177910 Msa0123200:five_prime_UTR 40.0%
TGTAAGCTAGGGAGAGAAAG+AGG + chr1_3:50174187-50174206 None:intergenic 45.0%
GGATAAAATCGAAAGCCAGG+GGG + chr1_3:50174249-50174268 None:intergenic 45.0%
CACGAATGAGGATGTTCTCA+AGG - chr1_3:50174311-50174330 Msa0123200:three_prime_UTR 45.0%
! GGGGTTTTGCAGTTACGTTA+CGG - chr1_3:50174746-50174765 Msa0123200:intron 45.0%
GCTGCGAATATTCTGTAAGG+TGG - chr1_3:50175625-50175644 Msa0123200:CDS 45.0%
CGGATAAAGTGACCTATGCA+TGG + chr1_3:50175901-50175920 None:intergenic 45.0%
!! CCTATTGGTTCTGAAACCTG+TGG + chr1_3:50176283-50176302 None:intergenic 45.0%
CCACAGGTTTCAGAACCAAT+AGG - chr1_3:50176280-50176299 Msa0123200:intron 45.0%
ACCAATAGGGCTACAACATC+TGG - chr1_3:50176294-50176313 Msa0123200:intron 45.0%
TCTGGCTATTGGAAAGCAAC+AGG - chr1_3:50176312-50176331 Msa0123200:intron 45.0%
CTGGCTATTGGAAAGCAACA+GGG - chr1_3:50176313-50176332 Msa0123200:intron 45.0%
CTATTGGAAAGCAACAGGGA+AGG - chr1_3:50176317-50176336 Msa0123200:intron 45.0%
CCTACAACCTCATGTGTGAT+TGG + chr1_3:50176360-50176379 None:intergenic 45.0%
CCAATCACACATGAGGTTGT+AGG - chr1_3:50176357-50176376 Msa0123200:intron 45.0%
CACATGAGGTTGTAGGAATG+AGG - chr1_3:50176364-50176383 Msa0123200:intron 45.0%
TACCTTAGGTGGCATATGTG+GGG + chr1_3:50176469-50176488 None:intergenic 45.0%
GTACCTTAGGTGGCATATGT+GGG + chr1_3:50176470-50176489 None:intergenic 45.0%
GATGAAGCCTAAGGTTTGTG+AGG - chr1_3:50176617-50176636 Msa0123200:intron 45.0%
GAGAAAGTTGGAGGAGTGAT+TGG - chr1_3:50177053-50177072 Msa0123200:intron 45.0%
!! TGGTTTGGTTGGTTAGGGAT+GGG + chr1_3:50177408-50177427 None:intergenic 45.0%
!! ATGGTTTGGTTGGTTAGGGA+TGG + chr1_3:50177409-50177428 None:intergenic 45.0%
!! TGGCATGGTTTGGTTGGTTA+GGG + chr1_3:50177413-50177432 None:intergenic 45.0%
!! TTGGCATGGTTTGGTTGGTT+AGG + chr1_3:50177414-50177433 None:intergenic 45.0%
ACCAACCAAACCATGCCAAT+TGG - chr1_3:50177415-50177434 Msa0123200:intron 45.0%
!! ACCAATTGGCATGGTTTGGT+TGG + chr1_3:50177419-50177438 None:intergenic 45.0%
! GTATGGGTTTTTGTGGGACA+TGG - chr1_3:50177597-50177616 Msa0123200:intron 45.0%
! GGAAGATCATCATGATGGTG+TGG - chr1_3:50177624-50177643 Msa0123200:intron 45.0%
CATGGAAGGAATGAGATTCG+AGG - chr1_3:50177657-50177676 Msa0123200:intron 45.0%
!! TATATAGAAAAATTATTTAT+TGG + chr1_3:50174847-50174866 None:intergenic 5.0%
!!! AATAATTTTTCTATATAATA+TGG - chr1_3:50174850-50174869 Msa0123200:intron 5.0%
!! GGATGTTCTCAAGGGTACCT+TGG - chr1_3:50174320-50174339 Msa0123200:exon 50.0%
!! TGTTCTCAAGGGTACCTTGG+AGG - chr1_3:50174323-50174342 Msa0123200:exon 50.0%
ACTTGCATACATGCGAGCCT+TGG - chr1_3:50174352-50174371 Msa0123200:CDS 50.0%
GCGGTTAAAACGGCTTCTCT+AGG - chr1_3:50175025-50175044 Msa0123200:intron 50.0%
CGTGACCGTAAATATGCCAC+AGG - chr1_3:50176264-50176283 Msa0123200:intron 50.0%
GCCAGATGTTGTAGCCCTAT+TGG + chr1_3:50176298-50176317 None:intergenic 50.0%
GGGCTACAACATCTGGCTAT+TGG - chr1_3:50176301-50176320 Msa0123200:intron 50.0%
AGCAACAGGGAAGGATCGAA+CGG - chr1_3:50176326-50176345 Msa0123200:intron 50.0%
CGTACCTTAGGTGGCATATG+TGG + chr1_3:50176471-50176490 None:intergenic 50.0%
! AGGGAGTGTGATGAAGCCTA+AGG - chr1_3:50176608-50176627 Msa0123200:intron 50.0%
! GGTTTGGTTGGTTAGGGATG+GGG + chr1_3:50177407-50177426 None:intergenic 50.0%
TGGTGTGGCCTCATCATACA+TGG - chr1_3:50177639-50177658 Msa0123200:intron 50.0%
GTGGCCTCATCATACATGGA+AGG - chr1_3:50177643-50177662 Msa0123200:intron 50.0%
GACCCCACATATGCCACCTA+AGG - chr1_3:50176464-50176483 Msa0123200:intron 55.0%
GGCATGCCACGTGCATGATT+GGG - chr1_3:50177815-50177834 Msa0123200:exon 55.0%
TGCGAGCCTTGGCAACTTCC+TGG - chr1_3:50174363-50174382 Msa0123200:CDS 60.0%
GGGCATGCCACGTGCATGAT+TGG - chr1_3:50177814-50177833 Msa0123200:exon 60.0%
! GTCGGTGCTTCACTTCCCCC+TGG - chr1_3:50174231-50174250 Msa0123200:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 50174065 50177981 50174065 ID=Msa0123200;Name=Msa0123200
chr1_3 mRNA 50174065 50177981 50174065 ID=Msa0123200-mRNA-1;Parent=Msa0123200;Name=Msa0123200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=151|1|1|1|1|1|3|273|275
chr1_3 exon 50174065 50174730 50174065 ID=Msa0123200-mRNA-1:exon:15297;Parent=Msa0123200-mRNA-1
chr1_3 exon 50175561 50175826 50175561 ID=Msa0123200-mRNA-1:exon:15296;Parent=Msa0123200-mRNA-1
chr1_3 exon 50177662 50177981 50177662 ID=Msa0123200-mRNA-1:exon:15295;Parent=Msa0123200-mRNA-1
chr1_3 five_prime_UTR 50177831 50177981 50177831 ID=Msa0123200-mRNA-1:five_prime_utr;Parent=Msa0123200-mRNA-1
chr1_3 CDS 50177662 50177830 50177662 ID=Msa0123200-mRNA-1:cds;Parent=Msa0123200-mRNA-1
chr1_3 CDS 50175561 50175826 50175561 ID=Msa0123200-mRNA-1:cds;Parent=Msa0123200-mRNA-1
chr1_3 CDS 50174338 50174730 50174338 ID=Msa0123200-mRNA-1:cds;Parent=Msa0123200-mRNA-1
chr1_3 three_prime_UTR 50174065 50174337 50174065 ID=Msa0123200-mRNA-1:three_prime_utr;Parent=Msa0123200-mRNA-1
Gene Sequence

>Msa0123200

ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCCCCTGGCTTTCGATTTTATCCTAGTGATGAAGAATTGGTCCTTCATTACCTTTACAAAAAAATCACGAATGAGGATGTTCTCAAGGGTACCTTGGAGGAAATTGACTTGCATACATGCGAGCCTTGGCAACTTCCTGAGGTGGCTAAACTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCCACAGGTTTCAGAACCAATAGGGCTACAACATCTGGCTATTGGAAAGCAACAGGGAAGGATCGAACGGTGTATGATCCAATCACACATGAGGTTGTAGGAATGAGGAAAACTCTAGTCTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTAGGTTGGAGACCCCACATATGCCACCTAAGGAGGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAGACAGAAAATAATGCCAAATTAAGTCCACAAGAAATGTATGAGACTATAGCCCCATCCCTAACCAACCAAACCATGCCAATTGGTTACAACCAATTTGCTTCTTTCTCATCTTCAATGACAACCCACCATTGTCATTTAAATGAGAACCAAAATAATTCTTTGATGAATCTTCTTCAATTTTCTAAGGAAACAAACAACAATTGTAGTAGTGTTACTCAAATTAGTCCTAAATGTGATGATGGGTATGGGTTTTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGCCTCATCATACATGGAAGGAATGAGATTCGAGGTTGATAATAATAGCATGGTCTTGTTATAA
Protein sequence

>Msa0123200

MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVYDPITHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNAKLSPQEMYETIAPSLTNQTMPIGYNQFASFSSSMTTHHCHLNENQNNSLMNLLQFSKETNNNCSSVTQISPKCDDGYGFLWDMDLEDHHDGVASSYMEGMRFEVDNNSMVLL*