AlfalfaGEDB | Msa0123970

M. sativa cultivar zhongmu-4 / Msa0123970

KEGG: -
GO: GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123970	XP_003590536.1	99.293	283	1	1	1	283	1	282	0.0	571

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123970	sp\|O22768\|UNE12_ARATH	70.130	308	64	8	2	282	3	309	8.14e-127	366

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123970	G7ICM9	99.293	283	1	1	1	283	1	282	0.0	571

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TFs/TRs:

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Gene ID	Type	Classification
Msa0123970	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123970	MtrunA17_Chr1g0184841	99.293	283	1	1	1	283	1	282	0.0	571
Msa0123970	MtrunA17_Chr1g0190731	80.571	175	34	0	105	279	177	351	3.74e-97	289
Msa0123970	MtrunA17_Chr4g0074161	65.854	164	46	3	109	263	194	356	3.51e-63	204
Msa0123970	MtrunA17_Chr1g0152131	51.579	95	45	1	92	185	231	325	1.48e-22	96.3
Msa0123970	MtrunA17_Chr7g0234761	60.000	75	29	1	112	185	308	382	4.44e-22	95.5
Msa0123970	MtrunA17_Chr8g0339091	60.000	75	29	1	112	185	282	356	7.86e-22	94.7
Msa0123970	MtrunA17_Chr3g0131771	48.980	98	49	1	113	209	139	236	7.95e-22	93.2
Msa0123970	MtrunA17_Chr3g0144641	65.152	66	22	1	121	185	191	256	5.25e-21	91.7
Msa0123970	MtrunA17_Chr8g0365941	63.636	66	23	1	121	185	305	370	3.12e-20	90.1
Msa0123970	MtrunA17_Chr4g0035101	63.636	66	23	1	121	185	143	208	3.92e-20	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123970	AT4G02590.2	70.130	308	64	8	2	282	3	309	8.28e-128	366
Msa0123970	AT4G02590.1	70.130	308	64	8	2	282	3	309	8.28e-128	366
Msa0123970	AT4G02590.3	78.390	236	44	5	53	282	12	246	1.67e-113	327
Msa0123970	AT1G03040.1	68.687	297	62	9	8	283	16	302	8.17e-111	322
Msa0123970	AT1G03040.3	63.043	322	69	8	8	283	16	333	2.10e-106	312
Msa0123970	AT1G03040.2	67.568	296	62	10	8	283	16	297	3.03e-106	311
Msa0123970	AT2G24260.2	65.359	153	48	2	114	263	28	178	1.59e-62	197
Msa0123970	AT2G24260.1	65.359	153	48	2	114	263	131	281	1.89e-60	196
Msa0123970	AT5G58010.1	49.541	218	81	5	73	277	62	263	3.71e-60	193
Msa0123970	AT4G30980.1	57.714	175	64	2	107	281	116	280	6.75e-59	190

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Find 157 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAGCTGAAAGAATC+AGG	0.318251	1_3:-51365910	Msa0123970:CDS
AAAGCAAGTAGCTAAGCTCA+TGG	0.516249	1_3:-51364244	Msa0123970:CDS
AAGAAGGGGTTTCGCTTTAT+TGG	0.207337	1_3:+51367670	None:intergenic
AAGAATAGCTGAAAGAATCA+GGG	0.613018	1_3:-51365909	Msa0123970:CDS
AAGCTACTATAATCAAGTAA+TGG	0.569880	1_3:-51363420	Msa0123970:three_prime_UTR
AAGCTCATGGAAGAAAATGT+TGG	0.509498	1_3:-51364231	Msa0123970:CDS
AAGGTGAGAGGCAGCGTCGC+CGG	0.485809	1_3:+51367401	None:intergenic
AATATACCAATCGCAACCGT+CGG	0.663547	1_3:-51364145	Msa0123970:CDS
AATGGGATGTCAGTTACCAG+TGG	0.664418	1_3:+51364421	None:intergenic
AATGGTTGCTTTAAGAATGC+TGG	0.540682	1_3:-51363602	Msa0123970:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTTCCTTGAACAAATTCT+CGG	-	chr1_3:51363447-51363466	Msa0123970:three_prime_UTR	30.0%
ATCATCTGTTTAAGCTGAAT+TGG	-	chr1_3:51363816-51363835	Msa0123970:three_prime_UTR	30.0%
TGGTGAAGTAACAAGTTATT+TGG	-	chr1_3:51364102-51364121	Msa0123970:CDS	30.0%
GGTGAAGTAACAAGTTATTT+GGG	-	chr1_3:51364103-51364122	Msa0123970:CDS	30.0%
ATCGTAGCATGAATTGTTAT+TGG	-	chr1_3:51364179-51364198	Msa0123970:CDS	30.0%
AAACTAGCAGTAAGTAAGAA+TGG	+	chr1_3:51364448-51364467	None:intergenic	30.0%
GGAAACATTTCAGACTTTAA+TGG	+	chr1_3:51364478-51364497	None:intergenic	30.0%
AAATCACATTGCTAATTCCT+TGG	-	chr1_3:51364938-51364957	Msa0123970:intron	30.0%
AAAGAATAGCTGAAAGAATC+AGG	-	chr1_3:51365023-51365042	Msa0123970:intron	30.0%
AAGAATAGCTGAAAGAATCA+GGG	-	chr1_3:51365024-51365043	Msa0123970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	51363228	51367727	51363228	ID=Msa0123970;Name=Msa0123970
chr1_3	mRNA	51363228	51367727	51363228	ID=Msa0123970-mRNA-1;Parent=Msa0123970;Name=Msa0123970-mRNA-1;_AED=0.12;_eAED=0.12;_QI=186\|1\|1\|1\|1\|1\|6\|873\|283
chr1_3	exon	51363228	51364331	51363228	ID=Msa0123970-mRNA-1:exon:15700;Parent=Msa0123970-mRNA-1
chr1_3	exon	51364408	51364485	51364408	ID=Msa0123970-mRNA-1:exon:15699;Parent=Msa0123970-mRNA-1
chr1_3	exon	51365075	51365140	51365075	ID=Msa0123970-mRNA-1:exon:15698;Parent=Msa0123970-mRNA-1
chr1_3	exon	51365877	51365942	51365877	ID=Msa0123970-mRNA-1:exon:15697;Parent=Msa0123970-mRNA-1
chr1_3	exon	51366071	51366190	51366071	ID=Msa0123970-mRNA-1:exon:15696;Parent=Msa0123970-mRNA-1
chr1_3	exon	51367251	51367727	51367251	ID=Msa0123970-mRNA-1:exon:15695;Parent=Msa0123970-mRNA-1
chr1_3	five_prime_UTR	51367542	51367727	51367542	ID=Msa0123970-mRNA-1:five_prime_utr;Parent=Msa0123970-mRNA-1
chr1_3	CDS	51367251	51367541	51367251	ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3	CDS	51366071	51366190	51366071	ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3	CDS	51365877	51365942	51365877	ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3	CDS	51365075	51365140	51365075	ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3	CDS	51364408	51364485	51364408	ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3	CDS	51364101	51364331	51364101	ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3	three_prime_UTR	51363228	51364100	51363228	ID=Msa0123970-mRNA-1:three_prime_utr;Parent=Msa0123970-mRNA-1

Gene Sequence

>Msa0123970

ATGGCGAATCATCCTTCCGATACACCCGCAGACGATTTCCTTGAACAAATTCTCGGTCTTCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTCCGATGATGCTGCAGCTTAACTCCGGCGACGCTGCCTCTCACCTTGGCGCTGGAGGAGGGTTTCATGCACCGGTTTATCATTTGGGGTTGAGCTTGGACCAGGGTAAAGGAGGAGGAGGGTTTTTGAAGCCTGATGAAGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATCTTGTTGATACAAGACCTAAAAATACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTGCTGCTCCACAACCACCAGCAATGCGTCCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCCCACAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACTGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCTCCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACAGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTGGCATCTGCAATATACCAATCGCAACCGTCGGACAACTCCAGTATAGTTAAGCCTGAAACTATTCCTCCTCCATAG

Protein sequence

>Msa0123970

MANHPSDTPADDFLEQILGLPNFTSADGTDASPMMLQLNSGDAASHLGAGGGFHAPVYHLGLSLDQGKGGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP*