AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123970 MtrunA17_Chr1g0184841 99.293 283 1 1 1 283 1 282 0.0 571
Msa0123970 MtrunA17_Chr1g0190731 80.571 175 34 0 105 279 177 351 3.74e-97 289
Msa0123970 MtrunA17_Chr4g0074161 65.854 164 46 3 109 263 194 356 3.51e-63 204
Msa0123970 MtrunA17_Chr1g0152131 51.579 95 45 1 92 185 231 325 1.48e-22 96.3
Msa0123970 MtrunA17_Chr7g0234761 60.000 75 29 1 112 185 308 382 4.44e-22 95.5
Msa0123970 MtrunA17_Chr8g0339091 60.000 75 29 1 112 185 282 356 7.86e-22 94.7
Msa0123970 MtrunA17_Chr3g0131771 48.980 98 49 1 113 209 139 236 7.95e-22 93.2
Msa0123970 MtrunA17_Chr3g0144641 65.152 66 22 1 121 185 191 256 5.25e-21 91.7
Msa0123970 MtrunA17_Chr8g0365941 63.636 66 23 1 121 185 305 370 3.12e-20 90.1
Msa0123970 MtrunA17_Chr4g0035101 63.636 66 23 1 121 185 143 208 3.92e-20 88.6
Msa0123970 MtrunA17_Chr5g0415291 56.000 75 32 1 112 185 103 177 5.56e-20 86.7
Msa0123970 MtrunA17_Chr5g0421111 62.687 67 24 1 120 185 364 430 7.11e-20 89.4
Msa0123970 MtrunA17_Chr8g0363921 60.606 66 25 1 121 185 151 216 1.43e-19 86.3
Msa0123970 MtrunA17_Chr8g0385911 50.588 85 37 2 120 203 144 224 1.76e-19 86.7
Msa0123970 MtrunA17_Chr4g0014771 62.121 66 24 1 120 184 117 182 1.84e-18 81.3
Msa0123970 MtrunA17_Chr1g0193321 50.000 74 33 1 123 196 464 533 7.20e-18 83.6
Msa0123970 MtrunA17_Chr1g0152651 58.462 65 27 0 120 184 273 337 1.23e-17 82.0
Msa0123970 MtrunA17_Chr1g0174271 54.667 75 33 1 114 187 291 365 1.52e-17 81.6
Msa0123970 MtrunA17_Chr3g0134741 48.780 82 42 0 120 201 228 309 2.56e-17 80.5
Msa0123970 MtrunA17_Chr1g0174161 48.864 88 39 3 120 206 159 241 3.61e-17 80.1
Msa0123970 MtrunA17_Chr1g0182791 50.000 72 32 1 123 194 319 386 3.78e-17 81.3
Msa0123970 MtrunA17_Chr6g0484271 57.576 66 27 1 121 185 155 220 4.00e-17 79.3
Msa0123970 MtrunA17_Chr5g0393721 56.923 65 28 0 120 184 223 287 5.42e-17 79.7
Msa0123970 MtrunA17_Chr1g0153241 42.697 89 44 2 101 189 71 152 6.51e-17 78.6
Msa0123970 MtrunA17_Chr7g0258161 56.716 67 28 1 120 185 172 238 3.76e-16 77.4
Msa0123970 MtrunA17_Chr7g0270871 53.571 56 26 0 132 187 213 268 4.01e-16 77.4
Msa0123970 MtrunA17_Chr1g0207311 51.316 76 37 0 109 184 184 259 5.01e-16 76.3
Msa0123970 MtrunA17_Chr7g0262691 45.070 71 39 0 123 193 254 324 6.60e-16 77.4
Msa0123970 MtrunA17_Chr3g0134001 48.750 80 40 1 114 193 164 242 1.25e-15 75.1
Msa0123970 MtrunA17_Chr7g0271251 47.368 76 37 1 123 198 434 506 1.55e-15 76.6
Msa0123970 MtrunA17_Chr8g0351881 52.174 69 32 1 120 187 315 383 1.70e-15 75.9
Msa0123970 MtrunA17_Chr7g0258181 45.882 85 36 2 104 187 235 310 2.15e-15 75.1
Msa0123970 MtrunA17_Chr4g0032951 53.623 69 31 1 120 187 354 422 2.26e-15 75.9
Msa0123970 MtrunA17_Chr3g0095391 49.206 63 32 0 123 185 311 373 2.32e-15 75.9
Msa0123970 MtrunA17_Chr5g0435021 41.304 92 50 2 94 184 193 281 3.26e-15 74.3
Msa0123970 MtrunA17_Chr2g0329041 54.688 64 28 1 120 182 331 394 9.00e-15 73.9
Msa0123970 MtrunA17_Chr1g0207301 47.059 68 36 0 117 184 284 351 1.13e-14 73.6
Msa0123970 MtrunA17_Chr8g0384141 49.333 75 38 0 109 183 102 176 1.26e-14 72.0
Msa0123970 MtrunA17_Chr5g0402031 41.304 92 46 2 132 218 116 204 1.27e-14 73.2
Msa0123970 MtrunA17_Chr1g0185741 33.333 126 72 1 127 252 190 303 2.14e-14 72.0
Msa0123970 MtrunA17_Chr3g0087771 53.030 66 30 1 120 184 321 386 6.91e-14 71.2
Msa0123970 MtrunA17_Chr7g0231461 43.750 64 36 0 121 184 297 360 1.68e-12 67.4
Msa0123970 MtrunA17_Chr7g0243041 47.170 53 28 0 128 180 33 85 5.44e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123970 AT4G02590.2 70.130 308 64 8 2 282 3 309 8.28e-128 366
Msa0123970 AT4G02590.1 70.130 308 64 8 2 282 3 309 8.28e-128 366
Msa0123970 AT4G02590.3 78.390 236 44 5 53 282 12 246 1.67e-113 327
Msa0123970 AT1G03040.1 68.687 297 62 9 8 283 16 302 8.17e-111 322
Msa0123970 AT1G03040.3 63.043 322 69 8 8 283 16 333 2.10e-106 312
Msa0123970 AT1G03040.2 67.568 296 62 10 8 283 16 297 3.03e-106 311
Msa0123970 AT2G24260.2 65.359 153 48 2 114 263 28 178 1.59e-62 197
Msa0123970 AT2G24260.1 65.359 153 48 2 114 263 131 281 1.89e-60 196
Msa0123970 AT5G58010.1 49.541 218 81 5 73 277 62 263 3.71e-60 193
Msa0123970 AT4G30980.1 57.714 175 64 2 107 281 116 280 6.75e-59 190
Msa0123970 AT4G30980.2 57.714 175 64 2 107 281 164 328 1.40e-58 191
Msa0123970 AT5G50915.3 53.333 90 37 2 113 201 128 213 2.71e-23 96.7
Msa0123970 AT5G50915.4 53.333 90 37 2 113 201 128 213 2.71e-23 96.7
Msa0123970 AT5G50915.1 53.333 90 37 2 113 201 128 213 3.03e-23 96.7
Msa0123970 AT5G50915.2 53.333 90 37 2 113 201 128 213 3.03e-23 96.7
Msa0123970 AT5G48560.1 61.333 75 28 1 112 185 292 366 3.77e-22 96.3
Msa0123970 AT5G48560.2 61.333 75 28 1 112 185 292 366 3.82e-22 95.9
Msa0123970 AT3G23690.1 44.000 125 60 3 62 185 141 256 4.59e-21 92.0
Msa0123970 AT1G10120.2 64.179 67 23 1 120 185 205 271 1.04e-20 90.9
Msa0123970 AT1G10120.1 64.179 67 23 1 120 185 205 271 1.04e-20 90.9
Msa0123970 AT3G07340.1 64.179 67 23 1 120 185 257 323 1.49e-20 91.3
Msa0123970 AT3G07340.2 65.152 66 22 1 121 185 258 323 1.55e-20 91.3
Msa0123970 AT4G34530.1 62.687 67 24 1 120 185 171 237 1.65e-20 90.1
Msa0123970 AT1G68920.3 63.636 66 23 1 121 185 302 367 2.63e-20 90.9
Msa0123970 AT1G68920.1 63.636 66 23 1 121 185 303 368 2.69e-20 90.9
Msa0123970 AT1G68920.4 63.636 66 23 1 121 185 303 368 2.69e-20 90.9
Msa0123970 AT1G68920.2 63.636 66 23 1 121 185 303 368 2.69e-20 90.9
Msa0123970 AT5G62610.2 37.879 132 66 3 112 227 144 275 5.07e-20 87.8
Msa0123970 AT5G62610.1 37.879 132 66 3 112 227 144 275 5.07e-20 87.8
Msa0123970 AT1G26260.3 52.273 88 36 3 120 206 171 253 7.86e-20 88.2
Msa0123970 AT1G26260.5 52.273 88 36 3 120 206 200 282 7.86e-20 88.6
Msa0123970 AT1G26260.4 52.273 88 36 3 120 206 222 304 1.04e-19 88.6
Msa0123970 AT1G26260.1 52.273 88 36 3 120 206 222 304 1.04e-19 88.6
Msa0123970 AT1G26260.6 52.273 88 36 3 120 206 222 304 1.04e-19 88.6
Msa0123970 AT1G26260.2 52.273 88 36 3 120 206 222 304 1.04e-19 88.6
Msa0123970 AT2G18300.2 60.606 66 25 1 121 185 185 250 2.42e-19 86.7
Msa0123970 AT4G33880.1 51.685 89 43 0 117 205 262 350 2.43e-19 87.0
Msa0123970 AT2G18300.1 60.606 66 25 1 121 185 185 250 2.65e-19 86.7
Msa0123970 AT1G25330.1 52.326 86 39 2 113 197 96 180 3.49e-19 84.3
Msa0123970 AT2G18300.3 60.606 66 25 1 121 185 185 250 3.63e-19 86.7
Msa0123970 AT1G59640.1 60.606 66 25 1 121 185 136 201 5.00e-19 84.7
Msa0123970 AT1G73830.2 62.121 66 24 1 121 185 147 212 5.46e-19 84.7
Msa0123970 AT1G73830.1 62.121 66 24 1 121 185 147 212 5.61e-19 84.7
Msa0123970 AT4G36540.2 59.091 66 26 1 121 185 141 206 9.37e-19 84.7
Msa0123970 AT4G36540.1 59.091 66 26 1 121 185 141 206 9.42e-19 84.7
Msa0123970 AT2G14760.1 50.575 87 43 0 117 203 233 319 1.20e-18 84.7
Msa0123970 AT1G59640.2 60.606 66 25 1 121 185 136 201 1.56e-18 84.7
Msa0123970 AT1G18400.2 56.000 75 31 2 120 193 144 217 2.33e-18 82.4
Msa0123970 AT1G18400.1 60.606 66 25 1 121 185 145 210 4.61e-18 82.0
Msa0123970 AT3G57800.2 39.416 137 58 3 121 232 204 340 5.16e-18 83.6
Msa0123970 AT1G27740.1 43.158 95 53 1 91 184 136 230 9.99e-18 81.3
Msa0123970 AT2G42300.1 43.697 119 54 5 120 230 184 297 2.34e-17 81.3
Msa0123970 AT4G09180.1 60.606 66 25 1 120 184 183 248 2.83e-17 79.7
Msa0123970 AT1G09530.3 50.000 64 32 0 123 186 339 402 3.74e-17 81.6
Msa0123970 AT1G09530.2 50.000 64 32 0 123 186 339 402 3.74e-17 81.6
Msa0123970 AT1G09530.5 50.000 64 32 0 123 186 339 402 3.74e-17 81.6
Msa0123970 AT1G09530.1 50.000 64 32 0 123 186 339 402 3.74e-17 81.6
Msa0123970 AT1G09530.4 50.000 64 32 0 123 186 339 402 3.74e-17 81.6
Msa0123970 AT1G09530.6 50.000 64 32 0 123 186 339 402 3.74e-17 81.6
Msa0123970 AT1G35460.1 60.606 66 25 1 120 184 180 245 6.13e-17 79.0
Msa0123970 AT2G42300.4 54.023 87 34 4 121 206 185 266 7.56e-17 79.0
Msa0123970 AT2G42280.1 56.522 69 29 1 120 187 278 346 8.57e-17 79.7
Msa0123970 AT2G20180.7 50.794 63 31 0 123 185 209 271 1.01e-16 80.1
Msa0123970 AT2G20180.1 50.794 63 31 0 123 185 209 271 1.01e-16 80.1
Msa0123970 AT2G20180.5 50.794 63 31 0 123 185 209 271 1.01e-16 80.1
Msa0123970 AT2G20180.4 50.794 63 31 0 123 185 280 342 1.24e-16 80.1
Msa0123970 AT2G20180.6 50.794 63 31 0 123 185 280 342 1.24e-16 80.1
Msa0123970 AT2G20180.2 50.794 63 31 0 123 185 280 342 1.24e-16 80.1
Msa0123970 AT2G20180.3 50.794 63 31 0 123 185 280 342 1.24e-16 80.1
Msa0123970 AT5G43175.1 49.275 69 35 0 116 184 127 195 2.90e-16 76.3
Msa0123970 AT2G14760.3 46.392 97 39 1 120 203 236 332 3.04e-16 78.2
Msa0123970 AT2G42280.3 59.375 64 25 1 120 182 278 341 8.68e-16 77.0
Msa0123970 AT2G20180.8 51.667 60 29 0 123 182 280 339 1.27e-15 76.3
Msa0123970 AT1G51140.1 55.072 69 30 1 120 187 303 371 5.40e-15 74.7
Msa0123970 AT3G21330.1 60.714 56 22 0 128 183 276 331 1.22e-14 73.6
Msa0123970 AT1G66470.1 47.945 73 37 1 130 201 204 276 1.61e-14 72.8
Msa0123970 AT5G37800.1 47.945 73 37 1 130 201 210 282 2.50e-14 72.4
Msa0123970 AT4G36930.1 50.847 59 29 0 127 185 197 255 4.30e-14 72.0
Msa0123970 AT5G67110.1 50.847 59 28 1 132 189 98 156 1.07e-13 68.9
Msa0123970 AT4G28790.1 44.118 68 38 0 118 185 268 335 1.92e-13 70.5
Msa0123970 AT4G00050.2 45.312 64 35 0 121 184 105 168 2.36e-13 69.3
Msa0123970 AT4G00050.1 45.312 64 35 0 121 184 207 270 4.98e-13 68.9
Msa0123970 AT4G00050.3 45.312 64 35 0 121 184 207 270 6.05e-13 68.6
Msa0123970 AT4G28815.2 43.860 57 32 0 124 180 71 127 8.65e-13 66.6
Msa0123970 AT2G46970.2 39.189 74 41 1 123 196 194 263 2.22e-12 67.0
Msa0123970 AT2G46970.1 39.189 74 41 1 123 196 225 294 2.24e-12 67.0
Msa0123970 AT2G46970.3 39.189 74 41 1 123 196 203 272 2.35e-12 67.0
Msa0123970 AT4G28815.1 43.860 57 32 0 124 180 147 203 2.36e-12 66.6
Msa0123970 AT2G43140.2 53.846 65 29 1 120 183 230 294 2.97e-12 66.2
Msa0123970 AT2G43140.1 53.846 65 29 1 120 183 133 197 3.17e-12 64.7
Msa0123970 AT5G01305.1 47.541 61 32 0 120 180 36 96 3.60e-12 63.9
Msa0123970 AT4G28800.1 36.000 75 44 1 124 198 252 322 4.58e-12 66.2
Msa0123970 AT2G43010.1 53.333 60 28 0 124 183 254 313 4.62e-12 66.2
Msa0123970 AT2G43010.2 53.333 60 28 0 124 183 254 313 4.69e-12 66.2
Msa0123970 AT4G28790.2 43.750 64 36 0 118 181 268 331 5.32e-12 65.9
Msa0123970 AT2G43010.3 53.333 60 28 0 124 183 261 320 5.32e-12 66.2
Msa0123970 AT3G59060.1 49.206 63 32 0 123 185 252 314 5.95e-12 65.9
Msa0123970 AT3G59060.3 49.206 63 32 0 123 185 252 314 6.02e-12 65.9
Msa0123970 AT3G59060.2 49.206 63 32 0 123 185 252 314 6.02e-12 65.9
Msa0123970 AT3G59060.4 49.206 63 32 0 123 185 252 314 6.02e-12 65.9
Msa0123970 AT2G43010.5 53.333 60 28 0 124 183 296 355 6.46e-12 65.9
Msa0123970 AT2G43010.4 53.333 60 28 0 124 183 254 313 7.47e-12 65.5
Msa0123970 AT4G00120.1 42.169 83 47 1 115 196 105 187 1.21e-11 63.2

Find 157 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGGAGTGGGAAGCGTTTC+CGG 0.137108 1_3:-51367281 Msa0123970:CDS
AAGAAGGGGTTTCGCTTTAT+TGG 0.207337 1_3:+51367670 None:intergenic
TTGATTATAGTAGCTTAGTA+TGG 0.228587 1_3:+51363427 None:intergenic
CATGCACCGGTTTATCATTT+GGG 0.231247 1_3:-51367360 Msa0123970:CDS
CGGGAGTGGGAAGCGTTTCC+GGG 0.277270 1_3:-51367280 Msa0123970:CDS
TCATGCACCGGTTTATCATT+TGG 0.277273 1_3:-51367361 Msa0123970:CDS
AGCGCCTCATCTACTACTTC+TGG 0.285746 1_3:-51364033 Msa0123970:three_prime_UTR
CAAATCAATGACTAAAATTA+AGG 0.288738 1_3:+51363979 None:intergenic
ATTACCTCGACTGACGATAA+TGG 0.304796 1_3:+51364403 None:intergenic
AAAGAATAGCTGAAAGAATC+AGG 0.318251 1_3:-51365910 Msa0123970:CDS
TATGGAAAATTTCTTGTAAA+GGG 0.323225 1_3:-51363834 Msa0123970:three_prime_UTR
AGTTTCAGGCTTAACTATAC+TGG 0.328183 1_3:+51364116 None:intergenic
TATGGAGGAGGAATAGTTTC+AGG 0.332933 1_3:+51364102 None:intergenic
GTGGCTTGTTTGTTGACTAT+TGG 0.333508 1_3:-51363239 Msa0123970:three_prime_UTR
TTGAAGCCTGATGAAGCTTC+CGG 0.337349 1_3:-51367300 Msa0123970:CDS
TCTCACCTTGGCGCTGGAGG+AGG 0.354681 1_3:-51367387 Msa0123970:CDS
AGCAGACCCTATCCTGTCTA+TGG 0.355480 1_3:-51363852 Msa0123970:three_prime_UTR
TGGATTATGTCAAATTCTTA+AGG 0.362058 1_3:-51365087 Msa0123970:CDS
TCTGAGTGACTAGTTGAAAA+TGG 0.367989 1_3:+51367623 None:intergenic
CCTCTTCTTGCCCGCACTCT+AGG 0.371401 1_3:+51366105 None:intergenic
CGCACTCTAGGACGCATTGC+TGG 0.372225 1_3:+51366117 None:intergenic
CATCACTAATAAATACTATA+TGG 0.373746 1_3:+51363663 None:intergenic
TGAAGCCTGATGAAGCTTCC+GGG 0.376117 1_3:-51367299 Msa0123970:CDS
TTACCTCGACTGACGATAAT+GGG 0.384485 1_3:+51364404 None:intergenic
CATAAAGTTGCATTCAAAGT+AGG 0.388409 1_3:-51363956 Msa0123970:three_prime_UTR
CCACTCCCGGAAGCTTCATC+AGG 0.392070 1_3:+51367294 None:intergenic
GTGGGACCTTGTAAAAGGTT+AGG 0.393557 1_3:-51363693 Msa0123970:three_prime_UTR
AGCTCATGGAAGAAAATGTT+GGG 0.395774 1_3:-51364230 Msa0123970:CDS
CATTGTCGAAGGCATGTCTA+TGG 0.405574 1_3:+51364084 None:intergenic
GATTTCCTTGAACAAATTCT+CGG 0.405613 1_3:-51367486 Msa0123970:CDS
GGGATGTGGGACCTTGTAAA+AGG 0.408505 1_3:-51363698 Msa0123970:three_prime_UTR
TGACTAAAATTAAGGAGGTT+AGG 0.414380 1_3:+51363987 None:intergenic
CTATGGAAAATTTCTTGTAA+AGG 0.421865 1_3:-51363835 Msa0123970:three_prime_UTR
ATAGTAGCTTAGTATGGGTT+AGG 0.426910 1_3:+51363433 None:intergenic
GCTGCCTCTCACCTTGGCGC+TGG 0.427725 1_3:-51367393 Msa0123970:CDS
GTTTCGCTTTATTGGATGCT+TGG 0.428370 1_3:+51367678 None:intergenic
CCGTCGGCGGAGGTGAAATT+CGG 0.429325 1_3:+51367459 None:intergenic
TTATCATTTGGGGTTGAGCT+TGG 0.431085 1_3:-51367349 Msa0123970:CDS
CAGGAAGAAGGAAGTGAGAG+TGG 0.433710 1_3:-51364312 Msa0123970:CDS
GCCTCTCACCTTGGCGCTGG+AGG 0.436271 1_3:-51367390 Msa0123970:CDS
TTTGGGGTTGAGCTTGGACC+AGG 0.438558 1_3:-51367343 Msa0123970:CDS
CTCACCTTGGCGCTGGAGGA+GGG 0.440875 1_3:-51367386 Msa0123970:CDS
TCACTTGAGAGTTAAGAATC+AGG 0.440998 1_3:+51363355 None:intergenic
GGACGCATTGCTGGTGGTTG+TGG 0.449885 1_3:+51366126 None:intergenic
CTCAACCCCAAATGATAAAC+CGG 0.453773 1_3:+51367354 None:intergenic
GCGCCTCATCTACTACTTCT+GGG 0.457754 1_3:-51364032 Msa0123970:three_prime_UTR
GAAGACCGAGAATTTGTTCA+AGG 0.461614 1_3:+51367481 None:intergenic
TGGGAGAAACCAACCAGCTT+GGG 0.463571 1_3:-51364292 Msa0123970:CDS
GGAACAGACAAATAACTTGC+GGG 0.464105 1_3:+51364008 None:intergenic
GGCGACGCTGCCTCTCACCT+TGG 0.464276 1_3:-51367399 Msa0123970:CDS
GACTGATCGAGCTGCCATGC+TGG 0.479757 1_3:-51365119 Msa0123970:CDS
TGGAGGAGGGTTTCATGCAC+CGG 0.480121 1_3:-51367373 Msa0123970:CDS
CCGGAAACGCTTCCCACTCC+CGG 0.481302 1_3:+51367281 None:intergenic
GAAATCGTCTGCGGGTGTAT+CGG 0.483633 1_3:+51367503 None:intergenic
AAGGTGAGAGGCAGCGTCGC+CGG 0.485809 1_3:+51367401 None:intergenic
TTGTTGACTATTGGATGGAT+TGG 0.486343 1_3:-51363230 Msa0123970:three_prime_UTR
GAGGCGCTCGATGGGACCAC+TGG 0.486947 1_3:+51364048 None:intergenic
TCCCCACAGCATCGCTGAAA+GGG 0.487553 1_3:-51366070 Msa0123970:intron
CTTGTTTGTTGACTATTGGA+TGG 0.488344 1_3:-51363235 Msa0123970:three_prime_UTR
ATTCTTAAGGCTTCAAGTGA+AGG 0.492189 1_3:-51365074 Msa0123970:intron
ATTGCAGATGCCAGTGAGAT+GGG 0.492955 1_3:+51364165 None:intergenic
TGTTGAAGTGCAATAGATAA+TGG 0.494811 1_3:-51363620 Msa0123970:three_prime_UTR
CCTGATGAAGCTTCCGGGAG+TGG 0.498744 1_3:-51367294 Msa0123970:CDS
ATGCACCGGTTTATCATTTG+GGG 0.499545 1_3:-51367359 Msa0123970:CDS
AGCGTCGGTTCCGTCGGCGG+AGG 0.501900 1_3:+51367449 None:intergenic
TTGAGCTTGGACCAGGGTAA+AGG 0.502002 1_3:-51367336 Msa0123970:CDS
CCGAATTTCACCTCCGCCGA+CGG 0.502344 1_3:-51367459 Msa0123970:CDS
TTCAGACACAAGACACAAGA+AGG 0.502645 1_3:+51367654 None:intergenic
AGCCGGTGCAGTGGCTCCAC+TGG 0.503330 1_3:-51364437 Msa0123970:CDS
TGGGACCTTGTAAAAGGTTA+GGG 0.504824 1_3:-51363692 Msa0123970:three_prime_UTR
ATGAGTAGATTGGGTGGAGC+CGG 0.504884 1_3:-51364454 Msa0123970:CDS
GGAGCAGCAGGAACTGTAGT+AGG 0.506388 1_3:+51366147 None:intergenic
TCACCCTTTCAGCGATGCTG+TGG 0.507317 1_3:+51366067 None:intergenic
CGGAGAAGCGTCGGTTCCGT+CGG 0.507774 1_3:+51367443 None:intergenic
GCTGGTGGTTGTGGAGCAGC+AGG 0.508567 1_3:+51366135 None:intergenic
AAGCTCATGGAAGAAAATGT+TGG 0.509498 1_3:-51364231 Msa0123970:CDS
GTGGGAGAAACCAACCAGCT+TGG 0.509556 1_3:-51364293 Msa0123970:CDS
CTTACTGATTAAGAGCCACT+TGG 0.510794 1_3:+51363384 None:intergenic
ACCACTTCTCCCAAGCTGGT+TGG 0.515047 1_3:+51364283 None:intergenic
TTGGACCAGGGTAAAGGAGG+AGG 0.515313 1_3:-51367330 Msa0123970:CDS
AGCAGGAACTGTAGTAGGCA+TGG 0.515934 1_3:+51366152 None:intergenic
AAAGCAAGTAGCTAAGCTCA+TGG 0.516249 1_3:-51364244 Msa0123970:CDS
AGCAATGCGTCCTAGAGTGC+GGG 0.522730 1_3:-51366115 Msa0123970:CDS
TTGAGGTGTGTGTATGTGTG+TGG 0.524731 1_3:-51363538 Msa0123970:three_prime_UTR
GACATGCCTTCGACAATGCT+TGG 0.526093 1_3:-51364079 Msa0123970:three_prime_UTR
TATTGCAGATGCCAGTGAGA+TGG 0.526193 1_3:+51364164 None:intergenic
CACCCTTTCAGCGATGCTGT+GGG 0.526622 1_3:+51366068 None:intergenic
AGTTGTCCGACGGTTGCGAT+TGG 0.526806 1_3:+51364139 None:intergenic
ACCAACCAGCTTGGGAGAAG+TGG 0.527139 1_3:-51364284 Msa0123970:CDS
GAGTTAAGCTGCAGCATCAT+CGG 0.527777 1_3:+51367423 None:intergenic
TGATGTAAGTGCTTTGATAG+TGG 0.527825 1_3:-51363740 Msa0123970:three_prime_UTR
TGATTATAGTAGCTTAGTAT+GGG 0.528625 1_3:+51363428 None:intergenic
TCCTCCAGCGCCAAGGTGAG+AGG 0.528910 1_3:+51367389 None:intergenic
TAGTAGATGAGGCGCTCGAT+GGG 0.530898 1_3:+51364040 None:intergenic
ATCCCCACAGCATCGCTGAA+AGG 0.531960 1_3:-51366071 Msa0123970:CDS
GACCAGGGTAAAGGAGGAGG+AGG 0.532673 1_3:-51367327 Msa0123970:CDS
TTAGACCACTTCTCCCAAGC+TGG 0.534418 1_3:+51364279 None:intergenic
CTGCATAATGCCCATCTCAC+TGG 0.536918 1_3:-51364175 Msa0123970:CDS
GATGTAAGTGCTTTGATAGT+GGG 0.537670 1_3:-51363739 Msa0123970:three_prime_UTR
CTGATGAAGCTTCCGGGAGT+GGG 0.540261 1_3:-51367293 Msa0123970:CDS
AATGGTTGCTTTAAGAATGC+TGG 0.540682 1_3:-51363602 Msa0123970:three_prime_UTR
AGGAAGAAGGAAGTGAGAGT+GGG 0.541139 1_3:-51364311 Msa0123970:CDS
GATGCAGTTTCTTCAATCAA+AGG 0.543892 1_3:-51364202 Msa0123970:CDS
CGAAGGCATGTCTATGGAGG+AGG 0.550678 1_3:+51364090 None:intergenic
TGAGGTGTGTGTATGTGTGT+GGG 0.555367 1_3:-51363537 Msa0123970:three_prime_UTR
TACCAGTGGAGCCACTGCAC+CGG 0.556175 1_3:+51364435 None:intergenic
AGTGCGGGCAAGAAGAGGAC+AGG 0.556988 1_3:-51366100 Msa0123970:CDS
AGAAGCGTCGGTTCCGTCGG+CGG 0.557440 1_3:+51367446 None:intergenic
ACGTGCTGTATGGATATGAA+TGG 0.559178 1_3:-51363309 Msa0123970:three_prime_UTR
ATGTAAGTGCTTTGATAGTG+GGG 0.560271 1_3:-51363738 Msa0123970:three_prime_UTR
TGGGAGAAGTGGTCTAATGA+TGG 0.569736 1_3:-51364273 Msa0123970:CDS
AAGCTACTATAATCAAGTAA+TGG 0.569880 1_3:-51363420 Msa0123970:three_prime_UTR
ATTGGGTGGAGCCGGTGCAG+TGG 0.571354 1_3:-51364446 Msa0123970:CDS
TGTTCAAGGAAATCGTCTGC+GGG 0.578916 1_3:+51367495 None:intergenic
CCTAGAGTGCGGGCAAGAAG+AGG 0.581308 1_3:-51366105 Msa0123970:CDS
GCAGGAACTGTAGTAGGCAT+GGG 0.583605 1_3:+51366153 None:intergenic
TATTAGTGATGTAACTCTAG+AGG 0.590895 1_3:-51363651 Msa0123970:three_prime_UTR
GAAACCCTCCTCCAGCGCCA+AGG 0.593872 1_3:+51367382 None:intergenic
CAGCAATGCGTCCTAGAGTG+CGG 0.594668 1_3:-51366116 Msa0123970:CDS
AGCTTGGACCAGGGTAAAGG+AGG 0.596467 1_3:-51367333 Msa0123970:CDS
GCACGTAAAAGTTGAGAGCA+TGG 0.596826 1_3:+51363326 None:intergenic
TTGAGCATGAGTAGATTGGG+TGG 0.604660 1_3:-51364460 Msa0123970:CDS
CAGCATCATCGGAGAAGCGT+CGG 0.604818 1_3:+51367434 None:intergenic
TTACTGATTAAGAGCCACTT+GGG 0.607539 1_3:+51363385 None:intergenic
TTGTATCAACAAGATCCTCC+CGG 0.608383 1_3:+51367262 None:intergenic
GTAGTAGATGAGGCGCTCGA+TGG 0.608554 1_3:+51364039 None:intergenic
AAGAATAGCTGAAAGAATCA+GGG 0.613018 1_3:-51365909 Msa0123970:CDS
TCGTCTGCGGGTGTATCGGA+AGG 0.613053 1_3:+51367507 None:intergenic
TTGGGGTTGAGCTTGGACCA+GGG 0.616126 1_3:-51367342 Msa0123970:CDS
TTGTTCAAGGAAATCGTCTG+CGG 0.616790 1_3:+51367494 None:intergenic
TGCCATGCTGGATGAAATTG+TGG 0.617577 1_3:-51365107 Msa0123970:CDS
ATCAATGACTAAAATTAAGG+AGG 0.621549 1_3:+51363982 None:intergenic
ACCCTCCTCCTCCTTTACCC+TGG 0.622386 1_3:+51367325 None:intergenic
TAAAATTTGTCAAAGTGACG+TGG 0.624369 1_3:-51363258 Msa0123970:three_prime_UTR
ATCCACAATTTCATCCAGCA+TGG 0.624370 1_3:+51365105 None:intergenic
AGGAACAGACAAATAACTTG+CGG 0.627300 1_3:+51364007 None:intergenic
ACCCTTTCAGCGATGCTGTG+GGG 0.628979 1_3:+51366069 None:intergenic
TGTCGAAGGCATGTCTATGG+AGG 0.632032 1_3:+51364087 None:intergenic
ACTCTAGGACGCATTGCTGG+TGG 0.633576 1_3:+51366120 None:intergenic
ATGATGCTGCAGCTTAACTC+CGG 0.636220 1_3:-51367420 Msa0123970:CDS
ACCAGGGTAAAGGAGGAGGA+GGG 0.637887 1_3:-51367326 Msa0123970:CDS
ACTATACTGGAGTTGTCCGA+CGG 0.639351 1_3:+51364129 None:intergenic
TCAGACACAAGACACAAGAA+GGG 0.642723 1_3:+51367655 None:intergenic
TCATGTACCTTGTTGACACT+AGG 0.645489 1_3:+51365869 None:intergenic
GGTCCCAGAAGTAGTAGATG+AGG 0.654289 1_3:+51364029 None:intergenic
GACCTTGTAAAAGGTTAGGG+TGG 0.659952 1_3:-51363689 Msa0123970:three_prime_UTR
GAGTGGGAAGCGTTTCCGGG+AGG 0.662373 1_3:-51367277 Msa0123970:CDS
AATATACCAATCGCAACCGT+CGG 0.663547 1_3:-51364145 Msa0123970:CDS
AATGGGATGTCAGTTACCAG+TGG 0.664418 1_3:+51364421 None:intergenic
TGGATATGAATGGAGAAATG+TGG 0.664806 1_3:-51363299 Msa0123970:three_prime_UTR
ACTTGTTCCTAGTGTCAACA+AGG 0.667852 1_3:-51365876 Msa0123970:intron
CATCCCATTATCGTCAGTCG+AGG 0.668468 1_3:-51364407 Msa0123970:intron
CAGACACAAGACACAAGAAG+GGG 0.669068 1_3:+51367656 None:intergenic
GATGTGCCAAGCATTGTCGA+AGG 0.672703 1_3:+51364073 None:intergenic
GCTCATGGAAGAAAATGTTG+GGG 0.678396 1_3:-51364229 Msa0123970:CDS
ATGCTTGGCACATCATCCAG+TGG 0.687924 1_3:-51364064 Msa0123970:three_prime_UTR
GGAACTTGATTGTGCCCAAG+TGG 0.700408 1_3:-51363399 Msa0123970:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATATATTTTTTTTTT+GGG - chr1_3:51365703-51365722 Msa0123970:intron 0.0%
!!! AAACTAATTTTGTTTAATTT+TGG - chr1_3:51363785-51363804 Msa0123970:three_prime_UTR 10.0%
!!! TTATGTTAAGTTACATTTTT+AGG + chr1_3:51363699-51363718 None:intergenic 15.0%
!! CAAGAAAAAAGTAAATATAA+AGG + chr1_3:51363728-51363747 None:intergenic 15.0%
!!! TAATTTTGTTTAATTTTGGT+GGG - chr1_3:51363789-51363808 Msa0123970:three_prime_UTR 15.0%
!!! ACGATAAGTTTTATTTTTAA+GGG + chr1_3:51364164-51364183 None:intergenic 15.0%
!!! TACGATAAGTTTTATTTTTA+AGG + chr1_3:51364165-51364184 None:intergenic 15.0%
!! TGAAGTATGATTATATATTA+TGG - chr1_3:51364282-51364301 Msa0123970:CDS 15.0%
!! TTAAGATATTAGAAAATACA+GGG + chr1_3:51364582-51364601 None:intergenic 15.0%
!!! TTTAAGATATTAGAAAATAC+AGG + chr1_3:51364583-51364602 None:intergenic 15.0%
!!! TTTTATTGTTATTGCAATAT+AGG - chr1_3:51365095-51365114 Msa0123970:CDS 15.0%
!! CTAAATAAATTACAAATACA+CGG + chr1_3:51365795-51365814 None:intergenic 15.0%
!!! ATTTGATTTCTATCTTTATT+AGG - chr1_3:51365913-51365932 Msa0123970:CDS 15.0%
!!! TTTGTAATCATTATTTTGTT+GGG - chr1_3:51366017-51366036 Msa0123970:intron 15.0%
!!! ACAAAATTTTATATATTGTC+TGG + chr1_3:51366595-51366614 None:intergenic 15.0%
!!! TATAAAATTTTGTATTGTTC+AGG - chr1_3:51366602-51366621 Msa0123970:intron 15.0%
!!! TTTTCCTTTTTGTATAAAAA+AGG - chr1_3:51367152-51367171 Msa0123970:intron 15.0%
!! TGTTTATTCAAAAAAGTAAT+TGG - chr1_3:51367426-51367445 Msa0123970:CDS 15.0%
!!! TTTTCTTTTCTTTTCAGTTA+TGG - chr1_3:51363395-51363414 Msa0123970:three_prime_UTR 20.0%
!!! CTAATTTTGTTTAATTTTGG+TGG - chr1_3:51363788-51363807 Msa0123970:three_prime_UTR 20.0%
!! GTATGATTATATATTATGGA+AGG - chr1_3:51364286-51364305 Msa0123970:CDS 20.0%
!!! TTTTCTGCTATATTTACATT+CGG + chr1_3:51364378-51364397 None:intergenic 20.0%
!! TAACATAATGCAAATAAGTT+AGG + chr1_3:51364499-51364518 None:intergenic 20.0%
!! TAAGATATTAGAAAATACAG+GGG + chr1_3:51364581-51364600 None:intergenic 20.0%
!! ACTTTATATATCATTAAGAC+AGG + chr1_3:51364737-51364756 None:intergenic 20.0%
!!! ATTGGTATTTTATGTAATCT+TGG - chr1_3:51365305-51365324 Msa0123970:intron 20.0%
!!! AACTGATTTTGGTATTAAAT+TGG + chr1_3:51365471-51365490 None:intergenic 20.0%
!!! ATGTTTATTACAATTAGTCT+GGG - chr1_3:51365571-51365590 Msa0123970:intron 20.0%
!!! TATATTTTTTTTTTGGGACT+TGG - chr1_3:51365709-51365728 Msa0123970:intron 20.0%
!! CTTTATTAGGTCTATAATTA+AGG - chr1_3:51365926-51365945 Msa0123970:intron 20.0%
!!! CTTTGTAATCATTATTTTGT+TGG - chr1_3:51366016-51366035 Msa0123970:intron 20.0%
!! AATAAAATCAAATGGCTAAT+GGG + chr1_3:51366088-51366107 None:intergenic 20.0%
!! AATTGTATCTTAATATTCAC+CGG + chr1_3:51366119-51366138 None:intergenic 20.0%
!!! TTTTGTTGAAAACTAGATAT+TGG + chr1_3:51366276-51366295 None:intergenic 20.0%
!! CAAATCAATGACTAAAATTA+AGG + chr1_3:51366957-51366976 None:intergenic 20.0%
!! CAAAAAAAAAGAAAAGACTA+TGG + chr1_3:51367006-51367025 None:intergenic 20.0%
!!! TAGTCTTTTCTTTTTTTTTG+CGG - chr1_3:51367006-51367025 Msa0123970:intron 20.0%
!! TATGGAAAATTTCTTGTAAA+GGG - chr1_3:51367099-51367118 Msa0123970:intron 20.0%
!! CATCACTAATAAATACTATA+TGG + chr1_3:51367273-51367292 None:intergenic 20.0%
! AATAGGTATTACTATTTACC+TGG - chr1_3:51363856-51363875 Msa0123970:three_prime_UTR 25.0%
! ATAGGTATTACTATTTACCT+GGG - chr1_3:51363857-51363876 Msa0123970:three_prime_UTR 25.0%
! GAAAACATTTCAGACTTTAA+TGG - chr1_3:51363993-51364012 Msa0123970:three_prime_UTR 25.0%
!!! TGAATTGTTATTGGTTTTTG+TGG - chr1_3:51364188-51364207 Msa0123970:CDS 25.0%
!!! GAATTGTTATTGGTTTTTGT+GGG - chr1_3:51364189-51364208 Msa0123970:CDS 25.0%
! TACTTCATTCATCTTTAAGT+TGG + chr1_3:51364269-51364288 None:intergenic 25.0%
! ATTATATATTATGGAAGGTG+TGG - chr1_3:51364291-51364310 Msa0123970:CDS 25.0%
!! TTATATATTATGGAAGGTGT+GGG - chr1_3:51364292-51364311 Msa0123970:CDS 25.0%
!!! AATATAGCAGAAAAAGTACT+TGG - chr1_3:51364384-51364403 Msa0123970:intron 25.0%
! AATACTGAATACATAGTACT+TGG - chr1_3:51364602-51364621 Msa0123970:intron 25.0%
! AAGGCAGAAATGTAAATTTA+AGG + chr1_3:51364670-51364689 None:intergenic 25.0%
! TAAATTTACATTTCTGCCTT+TGG - chr1_3:51364670-51364689 Msa0123970:intron 25.0%
! AAATTTACATTTCTGCCTTT+GGG - chr1_3:51364671-51364690 Msa0123970:intron 25.0%
! CGAATGATTAACATTTAATG+AGG - chr1_3:51364912-51364931 Msa0123970:intron 25.0%
!!! ACACAATCTAAAACTGATTT+TGG + chr1_3:51365482-51365501 None:intergenic 25.0%
! CATGTTTATTACAATTAGTC+TGG - chr1_3:51365570-51365589 Msa0123970:intron 25.0%
!! TCATCTTTTAACCTTTTGAT+AGG + chr1_3:51365604-51365623 None:intergenic 25.0%
! ATGGAAATATTATACAGAAG+AGG + chr1_3:51365761-51365780 None:intergenic 25.0%
! TGGATTATGTCAAATTCTTA+AGG - chr1_3:51365846-51365865 Msa0123970:intron 25.0%
! GAATAAAATCAAATGGCTAA+TGG + chr1_3:51366089-51366108 None:intergenic 25.0%
! TCATCGTGAATAAAATCAAA+TGG + chr1_3:51366096-51366115 None:intergenic 25.0%
! CATTGAAAATTAGACCTATT+TGG + chr1_3:51366239-51366258 None:intergenic 25.0%
! GTTGCTGACAAATTTAAATT+TGG + chr1_3:51366395-51366414 None:intergenic 25.0%
! AATTATTCAAATCATGTCGT+TGG - chr1_3:51366550-51366569 Msa0123970:intron 25.0%
! ATCAATGACTAAAATTAAGG+AGG + chr1_3:51366954-51366973 None:intergenic 25.0%
! CTATGGAAAATTTCTTGTAA+AGG - chr1_3:51367098-51367117 Msa0123970:intron 25.0%
!!! CCATCCTTTTTTATACAAAA+AGG + chr1_3:51367159-51367178 None:intergenic 25.0%
!! CCTTTTTGTATAAAAAAGGA+TGG - chr1_3:51367156-51367175 Msa0123970:intron 25.0%
!! TTTTGTATAAAAAAGGATGG+AGG - chr1_3:51367159-51367178 Msa0123970:intron 25.0%
!!! TGATGCTTTTTGTTTATTTG+AGG - chr1_3:51367378-51367397 Msa0123970:CDS 25.0%
!! AATTGGACCTCTTTTTATAA+TGG - chr1_3:51367443-51367462 Msa0123970:CDS 25.0%
!! ATTGGACCTCTTTTTATAAT+GGG - chr1_3:51367444-51367463 Msa0123970:CDS 25.0%
! TGATTATAGTAGCTTAGTAT+GGG + chr1_3:51367508-51367527 None:intergenic 25.0%
! TTGATTATAGTAGCTTAGTA+TGG + chr1_3:51367509-51367528 None:intergenic 25.0%
! AAGCTACTATAATCAAGTAA+TGG - chr1_3:51367513-51367532 Msa0123970:CDS 25.0%
GATTTCCTTGAACAAATTCT+CGG - chr1_3:51363447-51363466 Msa0123970:three_prime_UTR 30.0%
ATCATCTGTTTAAGCTGAAT+TGG - chr1_3:51363816-51363835 Msa0123970:three_prime_UTR 30.0%
!! AAATAACTTGTTACTTCACC+AGG + chr1_3:51364103-51364122 None:intergenic 30.0%
TGGTGAAGTAACAAGTTATT+TGG - chr1_3:51364102-51364121 Msa0123970:CDS 30.0%
GGTGAAGTAACAAGTTATTT+GGG - chr1_3:51364103-51364122 Msa0123970:CDS 30.0%
ATCGTAGCATGAATTGTTAT+TGG - chr1_3:51364179-51364198 Msa0123970:CDS 30.0%
AAACTAGCAGTAAGTAAGAA+TGG + chr1_3:51364448-51364467 None:intergenic 30.0%
GGAAACATTTCAGACTTTAA+TGG + chr1_3:51364478-51364497 None:intergenic 30.0%
! AAGTTTTTGCAGACTTTTCA+TGG - chr1_3:51364753-51364772 Msa0123970:intron 30.0%
! AGTTTTTGCAGACTTTTCAT+GGG - chr1_3:51364754-51364773 Msa0123970:intron 30.0%
AAATCACATTGCTAATTCCT+TGG - chr1_3:51364938-51364957 Msa0123970:intron 30.0%
AAAGAATAGCTGAAAGAATC+AGG - chr1_3:51365023-51365042 Msa0123970:intron 30.0%
AAGAATAGCTGAAAGAATCA+GGG - chr1_3:51365024-51365043 Msa0123970:intron 30.0%
TAAGATACGGAGACAAAATT+TGG - chr1_3:51365193-51365212 Msa0123970:intron 30.0%
!!! TTTCAGCACTGTTTTTGTTT+CGG + chr1_3:51365239-51365258 None:intergenic 30.0%
! AACAAAAACAGTGCTGAAAT+TGG - chr1_3:51365240-51365259 Msa0123970:intron 30.0%
AATTAAATCATCCTTCGAGT+GGG + chr1_3:51365406-51365425 None:intergenic 30.0%
AAATTTCATGTTCGCCAAAT+CGG + chr1_3:51365649-51365668 None:intergenic 30.0%
!! TTCTGAAGTATAAAGTCTTC+TGG - chr1_3:51365675-51365694 Msa0123970:intron 30.0%
!!! ATACACGGTTTTAGATACAA+TGG + chr1_3:51365780-51365799 None:intergenic 30.0%
GAAATCAAATGTGAAATCCA+TGG + chr1_3:51365903-51365922 None:intergenic 30.0%
!! TAATTAAGGTTAGCTTGAAC+TGG - chr1_3:51365940-51365959 Msa0123970:intron 30.0%
TAATGATTACAAAGAGTGAG+AGG + chr1_3:51366010-51366029 None:intergenic 30.0%
!! TTATTTTGTTGGGATTCAAC+TGG - chr1_3:51366027-51366046 Msa0123970:intron 30.0%
! TTGATTTTATTCACGATGAC+CGG - chr1_3:51366097-51366116 Msa0123970:CDS 30.0%
TCGGATAGTTGGATATTATT+GGG + chr1_3:51366184-51366203 None:intergenic 30.0%
TTCGGATAGTTGGATATTAT+TGG + chr1_3:51366185-51366204 None:intergenic 30.0%
AATAATATCCAACTATCCGA+AGG - chr1_3:51366184-51366203 Msa0123970:intron 30.0%
ATAATATCCAACTATCCGAA+GGG - chr1_3:51366185-51366204 Msa0123970:intron 30.0%
TCAATTGTCTTTCACCAAAT+AGG - chr1_3:51366222-51366241 Msa0123970:intron 30.0%
! TGTTCTTTTGTCTATCTTTC+AGG - chr1_3:51366448-51366467 Msa0123970:intron 30.0%
! TTTTGTATTGTTCAGGAAGA+AGG - chr1_3:51366609-51366628 Msa0123970:intron 30.0%
TGACTAAAATTAAGGAGGTT+AGG + chr1_3:51366949-51366968 None:intergenic 30.0%
CATAAAGTTGCATTCAAAGT+AGG - chr1_3:51366977-51366996 Msa0123970:intron 30.0%
! TATCAGCTTTTGTCAATACA+GGG - chr1_3:51367032-51367051 Msa0123970:intron 30.0%
! AATTTTCCATAGACAGGATA+GGG + chr1_3:51367090-51367109 None:intergenic 30.0%
! AAATTTTCCATAGACAGGAT+AGG + chr1_3:51367091-51367110 None:intergenic 30.0%
! ACAAGAAATTTTCCATAGAC+AGG + chr1_3:51367096-51367115 None:intergenic 30.0%
!!! GGGTTTTTAGTTTTTGTAGT+GGG - chr1_3:51367215-51367234 Msa0123970:intron 30.0%
TATTAGTGATGTAACTCTAG+AGG - chr1_3:51367282-51367301 Msa0123970:CDS 30.0%
TGTTGAAGTGCAATAGATAA+TGG - chr1_3:51367313-51367332 Msa0123970:CDS 30.0%
!! AAAGCATCATCATTTTCTTC+TGG + chr1_3:51367367-51367386 None:intergenic 30.0%
TAAAATTTGTCAAAGTGACG+TGG - chr1_3:51367675-51367694 Msa0123970:five_prime_UTR 30.0%
! TCTGAGTGACTAGTTGAAAA+TGG + chr1_3:51363313-51363332 None:intergenic 35.0%
TGTTTAAGCTGAATTGGACT+TGG - chr1_3:51363822-51363841 Msa0123970:three_prime_UTR 35.0%
!!! ACTTGGTTTTGGTGAGAAAT+AGG - chr1_3:51363839-51363858 Msa0123970:three_prime_UTR 35.0%
AAAAATTATGCCAGCTCAGT+TGG - chr1_3:51363942-51363961 Msa0123970:three_prime_UTR 35.0%
!!! TTGTTATTGGTTTTTGTGGG+TGG - chr1_3:51364192-51364211 Msa0123970:CDS 35.0%
TAAAGATCATACACCAAGTC+AGG + chr1_3:51364233-51364252 None:intergenic 35.0%
TCTAAATGGCTATTCTCAGT+TGG + chr1_3:51364529-51364548 None:intergenic 35.0%
TACTGTTGGCAATGTCTAAA+TGG + chr1_3:51364543-51364562 None:intergenic 35.0%
CATTAGCATTAAGCATACCA+AGG + chr1_3:51364958-51364977 None:intergenic 35.0%
CTTCAGAGTAAACACGAAAA+GGG + chr1_3:51365168-51365187 None:intergenic 35.0%
ACTTCAGAGTAAACACGAAA+AGG + chr1_3:51365169-51365188 None:intergenic 35.0%
!! CTCTGAAGTGAGATAAGATA+CGG - chr1_3:51365180-51365199 Msa0123970:intron 35.0%
!!! TTCAGCACTGTTTTTGTTTC+GGG + chr1_3:51365238-51365257 None:intergenic 35.0%
AGTATTGTTCAATGCGTACT+TGG - chr1_3:51365330-51365349 Msa0123970:intron 35.0%
GAATTAAATCATCCTTCGAG+TGG + chr1_3:51365407-51365426 None:intergenic 35.0%
! TTCTAACTCGTGTTTGAGTT+TGG - chr1_3:51365424-51365443 Msa0123970:intron 35.0%
! TCGTGTTTGAGTTTGGAAAA+TGG - chr1_3:51365431-51365450 Msa0123970:intron 35.0%
! ACCTCTCATGTTCTGTTTTA+CGG - chr1_3:51365537-51365556 Msa0123970:intron 35.0%
TGGGAAACAATCCTATCAAA+AGG - chr1_3:51365590-51365609 Msa0123970:intron 35.0%
!!! TTTTTTTTGGGACTTGGTTG+TGG - chr1_3:51365715-51365734 Msa0123970:intron 35.0%
ATTCTTAAGGCTTCAAGTGA+AGG - chr1_3:51365859-51365878 Msa0123970:intron 35.0%
!! GTCAAAAGGCATTGGTAAAT+AGG + chr1_3:51365988-51366007 None:intergenic 35.0%
TGGTTAAAGTAGCAACAACA+TGG + chr1_3:51366161-51366180 None:intergenic 35.0%
GATAGTTGGATATTATTGGG+TGG + chr1_3:51366181-51366200 None:intergenic 35.0%
TGATTTCTCTAGACACATGT+GGG - chr1_3:51366312-51366331 Msa0123970:intron 35.0%
TGTACATGAAAGTGAAAGCA+AGG - chr1_3:51366356-51366375 Msa0123970:intron 35.0%
!! GTTTTGAGCATGAGTAGATT+GGG - chr1_3:51366470-51366489 Msa0123970:intron 35.0%
AAGCTCATGGAAGAAAATGT+TGG - chr1_3:51366702-51366721 Msa0123970:intron 35.0%
AGCTCATGGAAGAAAATGTT+GGG - chr1_3:51366703-51366722 Msa0123970:intron 35.0%
GATGCAGTTTCTTCAATCAA+AGG - chr1_3:51366731-51366750 Msa0123970:intron 35.0%
AGTTTCAGGCTTAACTATAC+TGG + chr1_3:51366820-51366839 None:intergenic 35.0%
AGGAACAGACAAATAACTTG+CGG + chr1_3:51366929-51366948 None:intergenic 35.0%
! GTATCAGCTTTTGTCAATAC+AGG - chr1_3:51367031-51367050 Msa0123970:intron 35.0%
TAAAAAAGGATGGAGGTTAG+TGG - chr1_3:51367166-51367185 Msa0123970:intron 35.0%
TGATGTAAGTGCTTTGATAG+TGG - chr1_3:51367193-51367212 Msa0123970:intron 35.0%
! GATGTAAGTGCTTTGATAGT+GGG - chr1_3:51367194-51367213 Msa0123970:intron 35.0%
!! ATGTAAGTGCTTTGATAGTG+GGG - chr1_3:51367195-51367214 Msa0123970:intron 35.0%
!!! GGGGTTTTTAGTTTTTGTAG+TGG - chr1_3:51367214-51367233 Msa0123970:intron 35.0%
!! TTAGTTTTTGTAGTGGGATG+TGG - chr1_3:51367221-51367240 Msa0123970:intron 35.0%
!! TAGTTTTTGTAGTGGGATGT+GGG - chr1_3:51367222-51367241 Msa0123970:intron 35.0%
!! AATGGTTGCTTTAAGAATGC+TGG - chr1_3:51367331-51367350 Msa0123970:CDS 35.0%
TCTCCTCCCATTATAAAAAG+AGG + chr1_3:51367453-51367472 None:intergenic 35.0%
!! TTTTATAATGGGAGGAGAGA+TGG - chr1_3:51367455-51367474 Msa0123970:CDS 35.0%
ATAGTAGCTTAGTATGGGTT+AGG + chr1_3:51367503-51367522 None:intergenic 35.0%
! TTACTGATTAAGAGCCACTT+GGG + chr1_3:51367551-51367570 None:intergenic 35.0%
TCACTTGAGAGTTAAGAATC+AGG + chr1_3:51367581-51367600 None:intergenic 35.0%
TGGATATGAATGGAGAAATG+TGG - chr1_3:51367634-51367653 Msa0123970:five_prime_UTR 35.0%
! CTTGTTTGTTGACTATTGGA+TGG - chr1_3:51367698-51367717 Msa0123970:five_prime_UTR 35.0%
! TTGTTGACTATTGGATGGAT+TGG - chr1_3:51367703-51367722 Msa0123970:five_prime_UTR 35.0%
! GTTTCGCTTTATTGGATGCT+TGG + chr1_3:51363258-51363277 None:intergenic 40.0%
AAGAAGGGGTTTCGCTTTAT+TGG + chr1_3:51363266-51363285 None:intergenic 40.0%
TCAGACACAAGACACAAGAA+GGG + chr1_3:51363281-51363300 None:intergenic 40.0%
TTCAGACACAAGACACAAGA+AGG + chr1_3:51363282-51363301 None:intergenic 40.0%
TTGTTCAAGGAAATCGTCTG+CGG + chr1_3:51363442-51363461 None:intergenic 40.0%
! GAAGACCGAGAATTTGTTCA+AGG + chr1_3:51363455-51363474 None:intergenic 40.0%
!! TCATGCACCGGTTTATCATT+TGG - chr1_3:51363572-51363591 Msa0123970:three_prime_UTR 40.0%
!! CATGCACCGGTTTATCATTT+GGG - chr1_3:51363573-51363592 Msa0123970:three_prime_UTR 40.0%
!! ATGCACCGGTTTATCATTTG+GGG - chr1_3:51363574-51363593 Msa0123970:three_prime_UTR 40.0%
CTCAACCCCAAATGATAAAC+CGG + chr1_3:51363582-51363601 None:intergenic 40.0%
! TTATCATTTGGGGTTGAGCT+TGG - chr1_3:51363584-51363603 Msa0123970:three_prime_UTR 40.0%
TTGTATCAACAAGATCCTCC+CGG + chr1_3:51363674-51363693 None:intergenic 40.0%
!! AGCTGAATTGGACTTGGTTT+TGG - chr1_3:51363828-51363847 Msa0123970:three_prime_UTR 40.0%
TTACTATTTACCTGGGTCTC+AGG - chr1_3:51363864-51363883 Msa0123970:three_prime_UTR 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr1_3:51363907-51363926 None:intergenic 40.0%
!! CATTCTGAAATTCAGTTGCC+TGG - chr1_3:51364082-51364101 Msa0123970:exon 40.0%
AGGGTCATGTTATGACAAGT+TGG + chr1_3:51364145-51364164 None:intergenic 40.0%
! TTTTTGTGGGTGGTTCATTC+TGG - chr1_3:51364202-51364221 Msa0123970:CDS 40.0%
! TATTATGGAAGGTGTGGGAT+TGG - chr1_3:51364297-51364316 Msa0123970:CDS 40.0%
TAGACATTGCCAACAGTACT+TGG - chr1_3:51364545-51364564 Msa0123970:intron 40.0%
! AAAACGACTCCAAGTACTGT+TGG + chr1_3:51364557-51364576 None:intergenic 40.0%
TTTACATTTCTGCCTTTGGG+AGG - chr1_3:51364674-51364693 Msa0123970:intron 40.0%
! TTACATTTCTGCCTTTGGGA+GGG - chr1_3:51364675-51364694 Msa0123970:intron 40.0%
GACAGGAAAAAAATGCTCCT+TGG + chr1_3:51364720-51364739 None:intergenic 40.0%
!!! TCTGCGCAACTGTTTTTGAA+CGG + chr1_3:51365002-51365021 None:intergenic 40.0%
ACTTGTTCCTAGTGTCAACA+AGG - chr1_3:51365057-51365076 Msa0123970:intron 40.0%
TCATGTACCTTGTTGACACT+AGG + chr1_3:51365067-51365086 None:intergenic 40.0%
TCTATAGAACTTGCGCAATC+AGG - chr1_3:51365133-51365152 Msa0123970:intron 40.0%
! TGCTGAAATTGGAGCTTTGT+GGG - chr1_3:51365251-51365270 Msa0123970:intron 40.0%
!! GACTGATTTTCCTTGTTGCT+AGG - chr1_3:51365281-51365300 Msa0123970:intron 40.0%
! TTTTCCTTGTTGCTAGGCAT+TGG - chr1_3:51365287-51365306 Msa0123970:intron 40.0%
AATACCAATGCCTAGCAACA+AGG + chr1_3:51365294-51365313 None:intergenic 40.0%
! ACATGAGAGGTATGCTTATC+TGG + chr1_3:51365528-51365547 None:intergenic 40.0%
ACCGTAAAACAGAACATGAG+AGG + chr1_3:51365541-51365560 None:intergenic 40.0%
TCTGCATATAGTCTCCGATT+TGG - chr1_3:51365632-51365651 Msa0123970:intron 40.0%
ATCCACAATTTCATCCAGCA+TGG + chr1_3:51365831-51365850 None:intergenic 40.0%
ACAAAGAGTGAGAGGTCAAA+AGG + chr1_3:51366002-51366021 None:intergenic 40.0%
CATGTGTCTAGAGAAATCAC+TGG + chr1_3:51366311-51366330 None:intergenic 40.0%
GTGATTTCTCTAGACACATG+TGG - chr1_3:51366311-51366330 Msa0123970:intron 40.0%
!!! GGTTTTGAGCATGAGTAGAT+TGG - chr1_3:51366469-51366488 Msa0123970:intron 40.0%
TTACCTCGACTGACGATAAT+GGG + chr1_3:51366532-51366551 None:intergenic 40.0%
ATTACCTCGACTGACGATAA+TGG + chr1_3:51366533-51366552 None:intergenic 40.0%
AAAGCAAGTAGCTAAGCTCA+TGG - chr1_3:51366689-51366708 Msa0123970:intron 40.0%
GCTCATGGAAGAAAATGTTG+GGG - chr1_3:51366704-51366723 Msa0123970:intron 40.0%
AATATACCAATCGCAACCGT+CGG - chr1_3:51366788-51366807 Msa0123970:intron 40.0%
TATGGAGGAGGAATAGTTTC+AGG + chr1_3:51366834-51366853 None:intergenic 40.0%
! GGAACAGACAAATAACTTGC+GGG + chr1_3:51366928-51366947 None:intergenic 40.0%
!!! AGGGTCTGCTTGCATTTTTT+AGG + chr1_3:51367071-51367090 None:intergenic 40.0%
TGGGACCTTGTAAAAGGTTA+GGG - chr1_3:51367241-51367260 Msa0123970:intron 40.0%
! TACCACCCTAACCTTTTACA+AGG + chr1_3:51367249-51367268 None:intergenic 40.0%
!! GGACCTCTTTTTATAATGGG+AGG - chr1_3:51367447-51367466 Msa0123970:CDS 40.0%
! CTTACTGATTAAGAGCCACT+TGG + chr1_3:51367552-51367571 None:intergenic 40.0%
! CTCAACTTTTACGTGCTGTA+TGG - chr1_3:51367614-51367633 Msa0123970:five_prime_UTR 40.0%
ACGTGCTGTATGGATATGAA+TGG - chr1_3:51367624-51367643 Msa0123970:five_prime_UTR 40.0%
!! GTGGCTTGTTTGTTGACTAT+TGG - chr1_3:51367694-51367713 Msa0123970:five_prime_UTR 40.0%
CAGACACAAGACACAAGAAG+GGG + chr1_3:51363280-51363299 None:intergenic 45.0%
TGTTCAAGGAAATCGTCTGC+GGG + chr1_3:51363441-51363460 None:intergenic 45.0%
GAGTTAAGCTGCAGCATCAT+CGG + chr1_3:51363513-51363532 None:intergenic 45.0%
ATGATGCTGCAGCTTAACTC+CGG - chr1_3:51363513-51363532 Msa0123970:three_prime_UTR 45.0%
TTGAAGCCTGATGAAGCTTC+CGG - chr1_3:51363633-51363652 Msa0123970:three_prime_UTR 45.0%
GTCTCAGGTTTGATTCTCCT+CGG - chr1_3:51363879-51363898 Msa0123970:three_prime_UTR 45.0%
!! ATTCTCCTCGGTGCCAATTT+GGG - chr1_3:51363891-51363910 Msa0123970:three_prime_UTR 45.0%
TAACCTACTACCAACTGAGC+TGG + chr1_3:51363955-51363974 None:intergenic 45.0%
AGAACTTGCGCAATCAGGTA+AGG - chr1_3:51365138-51365157 Msa0123970:intron 45.0%
GTGCTGAAATTGGAGCTTTG+TGG - chr1_3:51365250-51365269 Msa0123970:intron 45.0%
! GCTGAAATTGGAGCTTTGTG+GGG - chr1_3:51365252-51365271 Msa0123970:intron 45.0%
! CGATAGTTCTACACAGACAC+TGG - chr1_3:51365368-51365387 Msa0123970:intron 45.0%
! TGAGAGGTATGCTTATCTGG+AGG + chr1_3:51365525-51365544 None:intergenic 45.0%
GTGGTCTGCTGTATTTCTCT+TGG - chr1_3:51365734-51365753 Msa0123970:intron 45.0%
TGCCATGCTGGATGAAATTG+TGG - chr1_3:51365826-51365845 Msa0123970:intron 45.0%
! TAGTGCTTTTGTGAGCTCCA+TGG - chr1_3:51365883-51365902 Msa0123970:CDS 45.0%
! AGTGAGAGGTCAAAAGGCAT+TGG + chr1_3:51365996-51366015 None:intergenic 45.0%
!! CTGAGATGCCACTTTGGTAT+GGG - chr1_3:51366061-51366080 Msa0123970:intron 45.0%
! TAATGGGTCCCATACCAAAG+TGG + chr1_3:51366072-51366091 None:intergenic 45.0%
GTGAAAGCAAGGCTCTTCAT+TGG - chr1_3:51366367-51366386 Msa0123970:intron 45.0%
TTGAGCATGAGTAGATTGGG+TGG - chr1_3:51366473-51366492 Msa0123970:intron 45.0%
AATGGGATGTCAGTTACCAG+TGG + chr1_3:51366515-51366534 None:intergenic 45.0%
AGGAAGAAGGAAGTGAGAGT+GGG - chr1_3:51366622-51366641 Msa0123970:intron 45.0%
TGGGAGAAGTGGTCTAATGA+TGG - chr1_3:51366660-51366679 Msa0123970:intron 45.0%
ATTGCAGATGCCAGTGAGAT+GGG + chr1_3:51366771-51366790 None:intergenic 45.0%
TATTGCAGATGCCAGTGAGA+TGG + chr1_3:51366772-51366791 None:intergenic 45.0%
ACTATACTGGAGTTGTCCGA+CGG + chr1_3:51366807-51366826 None:intergenic 45.0%
! CATTGTCGAAGGCATGTCTA+TGG + chr1_3:51366852-51366871 None:intergenic 45.0%
GTGGGACCTTGTAAAAGGTT+AGG - chr1_3:51367240-51367259 Msa0123970:intron 45.0%
GACCTTGTAAAAGGTTAGGG+TGG - chr1_3:51367244-51367263 Msa0123970:intron 45.0%
TTGAGGTGTGTGTATGTGTG+TGG - chr1_3:51367395-51367414 Msa0123970:CDS 45.0%
TGAGGTGTGTGTATGTGTGT+GGG - chr1_3:51367396-51367415 Msa0123970:CDS 45.0%
GCACGTAAAAGTTGAGAGCA+TGG + chr1_3:51367610-51367629 None:intergenic 45.0%
!!! CAAAATATATATTTTTTTTT+TGG - chr1_3:51365702-51365721 Msa0123970:intron 5.0%
GAAATCGTCTGCGGGTGTAT+CGG + chr1_3:51363433-51363452 None:intergenic 50.0%
TTGAGCTTGGACCAGGGTAA+AGG - chr1_3:51363597-51363616 Msa0123970:three_prime_UTR 50.0%
TGAAGCCTGATGAAGCTTCC+GGG - chr1_3:51363634-51363653 Msa0123970:three_prime_UTR 50.0%
GAGAATCAAACCTGAGACCC+AGG + chr1_3:51363877-51363896 None:intergenic 50.0%
!! GATTCTCCTCGGTGCCAATT+TGG - chr1_3:51363890-51363909 Msa0123970:three_prime_UTR 50.0%
!! ATGCCAGCTCAGTTGGTAGT+AGG - chr1_3:51363949-51363968 Msa0123970:three_prime_UTR 50.0%
CATTCTGGTAGCACCTGACT+TGG - chr1_3:51364217-51364236 Msa0123970:CDS 50.0%
!! AGGGACTGGAGAAGTGTTGT+TGG - chr1_3:51364694-51364713 Msa0123970:intron 50.0%
!! TGGAGAAGTGTTGTTGGCCA+AGG - chr1_3:51364700-51364719 Msa0123970:intron 50.0%
GCAGGAACTGTAGTAGGCAT+GGG + chr1_3:51364783-51364802 None:intergenic 50.0%
AGCAGGAACTGTAGTAGGCA+TGG + chr1_3:51364784-51364803 None:intergenic 50.0%
CTTGCGCAATCAGGTAAGGA+TGG - chr1_3:51365142-51365161 Msa0123970:intron 50.0%
CATGTCTGTTTCCCACTCGA+AGG - chr1_3:51365392-51365411 Msa0123970:intron 50.0%
CCATACCAAAGTGGCATCTC+AGG + chr1_3:51366063-51366082 None:intergenic 50.0%
!! CCTGAGATGCCACTTTGGTA+TGG - chr1_3:51366060-51366079 Msa0123970:intron 50.0%
GTTGAAGCCCTTCGGATAGT+TGG + chr1_3:51366195-51366214 None:intergenic 50.0%
TATCCGAAGGGCTTCAACTG+TGG - chr1_3:51366197-51366216 Msa0123970:intron 50.0%
AGTCCACAGTTGAAGCCCTT+CGG + chr1_3:51366203-51366222 None:intergenic 50.0%
ATGAGTAGATTGGGTGGAGC+CGG - chr1_3:51366479-51366498 Msa0123970:intron 50.0%
CATCCCATTATCGTCAGTCG+AGG - chr1_3:51366526-51366545 Msa0123970:intron 50.0%
CAGGAAGAAGGAAGTGAGAG+TGG - chr1_3:51366621-51366640 Msa0123970:intron 50.0%
TGGGAGAAACCAACCAGCTT+GGG - chr1_3:51366641-51366660 Msa0123970:intron 50.0%
TTAGACCACTTCTCCCAAGC+TGG + chr1_3:51366657-51366676 None:intergenic 50.0%
CTGCATAATGCCCATCTCAC+TGG - chr1_3:51366758-51366777 Msa0123970:intron 50.0%
! TGTCGAAGGCATGTCTATGG+AGG + chr1_3:51366849-51366868 None:intergenic 50.0%
GACATGCCTTCGACAATGCT+TGG - chr1_3:51366854-51366873 Msa0123970:intron 50.0%
! GATGTGCCAAGCATTGTCGA+AGG + chr1_3:51366863-51366882 None:intergenic 50.0%
ATGCTTGGCACATCATCCAG+TGG - chr1_3:51366869-51366888 Msa0123970:intron 50.0%
! TAGTAGATGAGGCGCTCGAT+GGG + chr1_3:51366896-51366915 None:intergenic 50.0%
AGCGCCTCATCTACTACTTC+TGG - chr1_3:51366900-51366919 Msa0123970:intron 50.0%
GCGCCTCATCTACTACTTCT+GGG - chr1_3:51366901-51366920 Msa0123970:intron 50.0%
GGTCCCAGAAGTAGTAGATG+AGG + chr1_3:51366907-51366926 None:intergenic 50.0%
AGCAGACCCTATCCTGTCTA+TGG - chr1_3:51367081-51367100 Msa0123970:intron 50.0%
GGGATGTGGGACCTTGTAAA+AGG - chr1_3:51367235-51367254 Msa0123970:intron 50.0%
GGAACTTGATTGTGCCCAAG+TGG - chr1_3:51367534-51367553 Msa0123970:exon 50.0%
! CAGCATCATCGGAGAAGCGT+CGG + chr1_3:51363502-51363521 None:intergenic 55.0%
TGGAGGAGGGTTTCATGCAC+CGG - chr1_3:51363560-51363579 Msa0123970:three_prime_UTR 55.0%
! TTTGGGGTTGAGCTTGGACC+AGG - chr1_3:51363590-51363609 Msa0123970:three_prime_UTR 55.0%
TTGGGGTTGAGCTTGGACCA+GGG - chr1_3:51363591-51363610 Msa0123970:three_prime_UTR 55.0%
AGCTTGGACCAGGGTAAAGG+AGG - chr1_3:51363600-51363619 Msa0123970:three_prime_UTR 55.0%
TTGGACCAGGGTAAAGGAGG+AGG - chr1_3:51363603-51363622 Msa0123970:three_prime_UTR 55.0%
ACCAGGGTAAAGGAGGAGGA+GGG - chr1_3:51363607-51363626 Msa0123970:three_prime_UTR 55.0%
CTGATGAAGCTTCCGGGAGT+GGG - chr1_3:51363640-51363659 Msa0123970:three_prime_UTR 55.0%
!! TCCTCGGTGCCAATTTGGGT+GGG - chr1_3:51363895-51363914 Msa0123970:three_prime_UTR 55.0%
! ATGGAAGGTGTGGGATTGGC+TGG - chr1_3:51364301-51364320 Msa0123970:CDS 55.0%
! TTTCTGCCTTTGGGAGGGAC+TGG - chr1_3:51364680-51364699 Msa0123970:intron 55.0%
ACTTCTCCAGTCCCTCCCAA+AGG + chr1_3:51364689-51364708 None:intergenic 55.0%
GGAGCAGCAGGAACTGTAGT+AGG + chr1_3:51364789-51364808 None:intergenic 55.0%
!! ACTCTAGGACGCATTGCTGG+TGG + chr1_3:51364816-51364835 None:intergenic 55.0%
CAGCAATGCGTCCTAGAGTG+CGG - chr1_3:51364817-51364836 Msa0123970:intron 55.0%
AGCAATGCGTCCTAGAGTGC+GGG - chr1_3:51364818-51364837 Msa0123970:intron 55.0%
ATCCCCACAGCATCGCTGAA+AGG - chr1_3:51364862-51364881 Msa0123970:intron 55.0%
TCCCCACAGCATCGCTGAAA+GGG - chr1_3:51364863-51364882 Msa0123970:intron 55.0%
ACCCTTTCAGCGATGCTGTG+GGG + chr1_3:51364867-51364886 None:intergenic 55.0%
CACCCTTTCAGCGATGCTGT+GGG + chr1_3:51364868-51364887 None:intergenic 55.0%
TCACCCTTTCAGCGATGCTG+TGG + chr1_3:51364869-51364888 None:intergenic 55.0%
! GCGAACCTGAGATGCCACTT+TGG - chr1_3:51366055-51366074 Msa0123970:intron 55.0%
GTGGGAGAAACCAACCAGCT+TGG - chr1_3:51366640-51366659 Msa0123970:intron 55.0%
ACCAACCAGCTTGGGAGAAG+TGG - chr1_3:51366649-51366668 Msa0123970:intron 55.0%
ACCACTTCTCCCAAGCTGGT+TGG + chr1_3:51366653-51366672 None:intergenic 55.0%
AGTTGTCCGACGGTTGCGAT+TGG + chr1_3:51366797-51366816 None:intergenic 55.0%
! CGAAGGCATGTCTATGGAGG+AGG + chr1_3:51366846-51366865 None:intergenic 55.0%
! GTAGTAGATGAGGCGCTCGA+TGG + chr1_3:51366897-51366916 None:intergenic 55.0%
TCGTCTGCGGGTGTATCGGA+AGG + chr1_3:51363429-51363448 None:intergenic 60.0%
CCGTCGGCGGAGGTGAAATT+CGG + chr1_3:51363477-51363496 None:intergenic 60.0%
CCGAATTTCACCTCCGCCGA+CGG - chr1_3:51363474-51363493 Msa0123970:three_prime_UTR 60.0%
GACCAGGGTAAAGGAGGAGG+AGG - chr1_3:51363606-51363625 Msa0123970:three_prime_UTR 60.0%
ACCCTCCTCCTCCTTTACCC+TGG + chr1_3:51363611-51363630 None:intergenic 60.0%
CCACTCCCGGAAGCTTCATC+AGG + chr1_3:51363642-51363661 None:intergenic 60.0%
CCTGATGAAGCTTCCGGGAG+TGG - chr1_3:51363639-51363658 Msa0123970:three_prime_UTR 60.0%
!! CTCCTCGGTGCCAATTTGGG+TGG - chr1_3:51363894-51363913 Msa0123970:three_prime_UTR 60.0%
GGACGCATTGCTGGTGGTTG+TGG + chr1_3:51364810-51364829 None:intergenic 60.0%
!! CGCACTCTAGGACGCATTGC+TGG + chr1_3:51364819-51364838 None:intergenic 60.0%
CCTCTTCTTGCCCGCACTCT+AGG + chr1_3:51364831-51364850 None:intergenic 60.0%
CCTAGAGTGCGGGCAAGAAG+AGG - chr1_3:51364828-51364847 Msa0123970:intron 60.0%
AGTGCGGGCAAGAAGAGGAC+AGG - chr1_3:51364833-51364852 Msa0123970:intron 60.0%
GACTGATCGAGCTGCCATGC+TGG - chr1_3:51365814-51365833 Msa0123970:intron 60.0%
TACCAGTGGAGCCACTGCAC+CGG + chr1_3:51366501-51366520 None:intergenic 60.0%
!! AGAAGCGTCGGTTCCGTCGG+CGG + chr1_3:51363490-51363509 None:intergenic 65.0%
!! CGGAGAAGCGTCGGTTCCGT+CGG + chr1_3:51363493-51363512 None:intergenic 65.0%
AAGGTGAGAGGCAGCGTCGC+CGG + chr1_3:51363535-51363554 None:intergenic 65.0%
TCCTCCAGCGCCAAGGTGAG+AGG + chr1_3:51363547-51363566 None:intergenic 65.0%
! TCTCACCTTGGCGCTGGAGG+AGG - chr1_3:51363546-51363565 Msa0123970:three_prime_UTR 65.0%
! CTCACCTTGGCGCTGGAGGA+GGG - chr1_3:51363547-51363566 Msa0123970:three_prime_UTR 65.0%
GAAACCCTCCTCCAGCGCCA+AGG + chr1_3:51363554-51363573 None:intergenic 65.0%
CCGGAAACGCTTCCCACTCC+CGG + chr1_3:51363655-51363674 None:intergenic 65.0%
!! CCGGGAGTGGGAAGCGTTTC+CGG - chr1_3:51363652-51363671 Msa0123970:three_prime_UTR 65.0%
!! CGGGAGTGGGAAGCGTTTCC+GGG - chr1_3:51363653-51363672 Msa0123970:three_prime_UTR 65.0%
!! GAGTGGGAAGCGTTTCCGGG+AGG - chr1_3:51363656-51363675 Msa0123970:three_prime_UTR 65.0%
GCCCACCCAAATTGGCACCG+AGG + chr1_3:51363899-51363918 None:intergenic 65.0%
GCTGGTGGTTGTGGAGCAGC+AGG + chr1_3:51364801-51364820 None:intergenic 65.0%
ATTGGGTGGAGCCGGTGCAG+TGG - chr1_3:51366487-51366506 Msa0123970:intron 65.0%
GGCGACGCTGCCTCTCACCT+TGG - chr1_3:51363534-51363553 Msa0123970:three_prime_UTR 70.0%
GCTGCCTCTCACCTTGGCGC+TGG - chr1_3:51363540-51363559 Msa0123970:three_prime_UTR 70.0%
! GCCTCTCACCTTGGCGCTGG+AGG - chr1_3:51363543-51363562 Msa0123970:three_prime_UTR 70.0%
AGCCGGTGCAGTGGCTCCAC+TGG - chr1_3:51366496-51366515 Msa0123970:intron 70.0%
! GAGGCGCTCGATGGGACCAC+TGG + chr1_3:51366888-51366907 None:intergenic 70.0%
!! AGCGTCGGTTCCGTCGGCGG+AGG + chr1_3:51363487-51363506 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51363228 51367727 51363228 ID=Msa0123970;Name=Msa0123970
chr1_3 mRNA 51363228 51367727 51363228 ID=Msa0123970-mRNA-1;Parent=Msa0123970;Name=Msa0123970-mRNA-1;_AED=0.12;_eAED=0.12;_QI=186|1|1|1|1|1|6|873|283
chr1_3 exon 51363228 51364331 51363228 ID=Msa0123970-mRNA-1:exon:15700;Parent=Msa0123970-mRNA-1
chr1_3 exon 51364408 51364485 51364408 ID=Msa0123970-mRNA-1:exon:15699;Parent=Msa0123970-mRNA-1
chr1_3 exon 51365075 51365140 51365075 ID=Msa0123970-mRNA-1:exon:15698;Parent=Msa0123970-mRNA-1
chr1_3 exon 51365877 51365942 51365877 ID=Msa0123970-mRNA-1:exon:15697;Parent=Msa0123970-mRNA-1
chr1_3 exon 51366071 51366190 51366071 ID=Msa0123970-mRNA-1:exon:15696;Parent=Msa0123970-mRNA-1
chr1_3 exon 51367251 51367727 51367251 ID=Msa0123970-mRNA-1:exon:15695;Parent=Msa0123970-mRNA-1
chr1_3 five_prime_UTR 51367542 51367727 51367542 ID=Msa0123970-mRNA-1:five_prime_utr;Parent=Msa0123970-mRNA-1
chr1_3 CDS 51367251 51367541 51367251 ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3 CDS 51366071 51366190 51366071 ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3 CDS 51365877 51365942 51365877 ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3 CDS 51365075 51365140 51365075 ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3 CDS 51364408 51364485 51364408 ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3 CDS 51364101 51364331 51364101 ID=Msa0123970-mRNA-1:cds;Parent=Msa0123970-mRNA-1
chr1_3 three_prime_UTR 51363228 51364100 51363228 ID=Msa0123970-mRNA-1:three_prime_utr;Parent=Msa0123970-mRNA-1
Gene Sequence

>Msa0123970

ATGGCGAATCATCCTTCCGATACACCCGCAGACGATTTCCTTGAACAAATTCTCGGTCTTCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTCCGATGATGCTGCAGCTTAACTCCGGCGACGCTGCCTCTCACCTTGGCGCTGGAGGAGGGTTTCATGCACCGGTTTATCATTTGGGGTTGAGCTTGGACCAGGGTAAAGGAGGAGGAGGGTTTTTGAAGCCTGATGAAGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATCTTGTTGATACAAGACCTAAAAATACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTGCTGCTCCACAACCACCAGCAATGCGTCCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCCCACAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACTGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCTCCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACAGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTGGCATCTGCAATATACCAATCGCAACCGTCGGACAACTCCAGTATAGTTAAGCCTGAAACTATTCCTCCTCCATAG
Protein sequence

>Msa0123970

MANHPSDTPADDFLEQILGLPNFTSADGTDASPMMLQLNSGDAASHLGAGGGFHAPVYHLGLSLDQGKGGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP*