AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124240 MtrunA17_Chr1g0185121 95.516 446 14 2 1 440 1 446 0.0 880
Msa0124240 MtrunA17_Chr8g0342421 56.780 354 101 9 6 327 18 351 5.05e-116 349
Msa0124240 MtrunA17_Chr1g0191991 60.784 306 86 5 40 328 63 351 3.80e-115 347
Msa0124240 MtrunA17_Chr2g0330171 53.403 382 134 11 6 363 1 362 4.70e-114 342
Msa0124240 MtrunA17_Chr1g0181381 83.516 182 26 1 36 217 34 211 1.25e-113 342
Msa0124240 MtrunA17_Chr1g0151351 57.191 299 93 6 35 333 37 300 7.21e-113 339
Msa0124240 MtrunA17_Chr7g0263941 57.143 322 97 8 17 327 11 302 9.37e-111 332
Msa0124240 MtrunA17_Chr1g0162971 50.129 389 124 10 40 379 41 408 1.82e-110 332
Msa0124240 MtrunA17_Chr8g0373541 75.862 203 42 3 6 208 4 199 4.38e-109 332
Msa0124240 MtrunA17_Chr4g0040571 83.146 178 29 1 29 206 28 204 4.48e-109 331
Msa0124240 MtrunA17_Chr4g0029521 55.873 315 113 8 36 327 34 345 1.46e-108 329
Msa0124240 MtrunA17_Chr2g0326381 62.451 253 74 4 40 282 32 273 7.73e-106 320
Msa0124240 MtrunA17_Chr1g0199101 64.639 263 67 8 40 295 47 290 2.78e-105 322
Msa0124240 MtrunA17_Chr3g0141431 48.020 404 163 12 33 401 15 406 5.77e-104 315
Msa0124240 MtrunA17_Chr1g0163001 69.027 226 56 4 4 224 2 218 1.43e-103 317
Msa0124240 MtrunA17_Chr1g0210821 59.533 257 87 5 43 283 47 302 4.83e-102 315
Msa0124240 MtrunA17_Chr7g0268961 56.536 306 86 6 50 328 32 317 1.04e-101 311
Msa0124240 MtrunA17_Chr2g0324991 85.606 132 18 1 51 182 3 133 8.71e-83 251
Msa0124240 MtrunA17_Chr8g0375521 49.798 247 111 5 40 279 27 267 2.16e-75 241
Msa0124240 MtrunA17_Chr6g0479921 63.694 157 55 2 40 195 29 184 1.83e-71 233
Msa0124240 MtrunA17_Chr2g0320341 36.774 155 85 3 49 190 224 378 7.35e-26 108
Msa0124240 MtrunA17_Chr1g0200421 36.184 152 84 4 54 193 236 386 1.39e-23 103
Msa0124240 MtrunA17_Chr3g0123941 36.538 156 92 3 45 193 113 268 4.53e-23 99.4
Msa0124240 MtrunA17_Chr5g0422571 31.731 208 129 6 14 211 60 264 1.15e-21 94.7
Msa0124240 MtrunA17_Chr7g0258011 34.810 158 84 6 61 201 181 336 2.00e-20 92.0
Msa0124240 MtrunA17_Chr8g0382121 35.135 148 86 4 53 190 109 256 3.01e-20 90.9
Msa0124240 MtrunA17_Chr4g0053341 30.846 201 124 7 2 193 24 218 3.28e-20 89.4
Msa0124240 MtrunA17_Chr1g0198651 35.172 145 80 5 61 193 107 249 3.71e-20 90.5
Msa0124240 MtrunA17_Chr8g0352011 36.620 142 79 5 61 193 171 310 5.96e-20 90.5
Msa0124240 MtrunA17_Chr1g0173841 35.915 142 80 5 61 193 220 359 3.54e-19 89.0
Msa0124240 MtrunA17_Chr4g0026521 34.694 147 85 5 56 193 118 262 4.77e-19 87.4
Msa0124240 MtrunA17_Chr2g0328921 33.523 176 97 7 27 193 118 282 7.81e-19 87.0
Msa0124240 MtrunA17_Chr2g0321291 35.374 147 84 5 56 193 133 277 1.81e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124240 AT4G02670.1 50.630 397 122 9 23 404 36 373 7.00e-121 358
Msa0124240 AT4G02670.2 50.630 397 122 9 23 404 38 375 8.61e-121 358
Msa0124240 AT3G50700.1 48.165 436 153 13 2 386 1 414 1.14e-113 341
Msa0124240 AT1G55110.3 73.059 219 51 4 6 216 21 239 7.12e-111 334
Msa0124240 AT1G55110.1 73.059 219 51 4 6 216 21 239 7.12e-111 334
Msa0124240 AT1G55110.2 73.059 219 51 4 6 216 21 239 7.12e-111 334
Msa0124240 AT5G03150.1 81.868 182 30 1 39 217 52 233 3.76e-108 329
Msa0124240 AT5G66730.1 70.089 224 54 4 2 221 1 215 4.79e-107 326
Msa0124240 AT3G45260.2 83.735 166 27 0 39 204 38 203 1.78e-106 323
Msa0124240 AT3G45260.1 83.735 166 27 0 39 204 38 203 1.78e-106 323
Msa0124240 AT1G03840.1 82.759 174 29 1 33 206 34 206 5.33e-106 323
Msa0124240 AT3G13810.6 85.629 167 24 0 37 203 48 214 5.47e-106 323
Msa0124240 AT3G13810.5 85.629 167 24 0 37 203 62 228 5.47e-106 323
Msa0124240 AT3G13810.4 85.629 167 24 0 37 203 67 233 5.62e-106 323
Msa0124240 AT3G13810.1 85.629 167 24 0 37 203 67 233 5.62e-106 323
Msa0124240 AT5G44160.1 77.128 188 38 2 19 206 20 202 2.28e-103 315
Msa0124240 AT1G14580.1 79.429 175 30 2 34 203 42 215 2.30e-103 315
Msa0124240 AT1G14580.2 79.429 175 30 2 34 203 42 215 2.30e-103 315
Msa0124240 AT1G14580.3 79.429 175 30 2 34 203 56 229 4.86e-103 315
Msa0124240 AT5G60470.3 73.438 192 42 2 40 222 40 231 5.08e-103 314
Msa0124240 AT5G60470.2 73.438 192 42 2 40 222 44 235 5.86e-103 314
Msa0124240 AT2G02080.1 78.161 174 33 2 34 203 44 216 2.05e-102 315
Msa0124240 AT2G02080.4 78.161 174 33 2 34 203 44 216 2.05e-102 315
Msa0124240 AT2G02080.5 78.161 174 33 2 34 203 44 216 2.05e-102 315
Msa0124240 AT2G02080.3 78.161 174 33 2 34 203 44 216 2.05e-102 315
Msa0124240 AT1G03840.2 81.609 174 29 2 33 206 34 204 2.98e-102 314
Msa0124240 AT2G02070.2 84.146 164 25 1 40 203 52 214 3.07e-101 314
Msa0124240 AT2G02070.1 84.146 164 25 1 40 203 52 214 3.07e-101 314
Msa0124240 AT3G13810.3 87.582 153 19 0 51 203 68 220 1.13e-98 304
Msa0124240 AT3G13810.2 87.582 153 19 0 51 203 82 234 1.87e-98 304
Msa0124240 AT5G60470.1 72.376 181 41 2 51 222 46 226 3.04e-95 294
Msa0124240 AT5G44160.2 81.529 157 28 1 50 206 8 163 3.38e-94 290
Msa0124240 AT2G02080.6 80.714 140 26 1 64 203 1 139 2.34e-86 271
Msa0124240 AT2G02080.2 80.714 140 26 1 64 203 1 139 2.34e-86 271
Msa0124240 AT2G01940.1 62.573 171 59 2 27 196 35 201 3.39e-75 242
Msa0124240 AT1G68130.1 64.103 156 55 1 40 194 41 196 5.64e-73 235
Msa0124240 AT1G25250.3 63.694 157 55 2 40 194 33 189 4.35e-72 232
Msa0124240 AT2G01940.3 61.628 172 60 3 27 196 35 202 1.19e-71 233
Msa0124240 AT1G25250.1 64.626 147 50 2 50 194 20 166 1.16e-68 223
Msa0124240 AT2G01940.2 62.500 112 41 1 86 196 1 112 8.22e-46 162
Msa0124240 AT1G68130.2 61.818 110 41 1 86 194 1 110 2.79e-45 160
Msa0124240 AT1G25250.2 60.360 111 42 2 86 194 1 111 1.24e-43 155
Msa0124240 AT5G22890.1 35.542 166 92 4 38 190 188 351 6.47e-24 103
Msa0124240 AT1G34370.3 35.443 158 89 4 49 193 14 171 1.57e-23 100
Msa0124240 AT1G34370.2 35.443 158 89 4 49 193 224 381 4.07e-23 102
Msa0124240 AT1G34370.1 35.443 158 89 4 49 193 224 381 4.07e-23 102
Msa0124240 AT1G13290.1 33.987 153 88 6 61 202 93 243 1.24e-19 89.4
Msa0124240 AT1G34790.1 36.000 150 85 5 53 193 129 276 5.60e-19 87.4
Msa0124240 AT1G08290.1 35.260 173 91 8 40 193 142 312 7.55e-19 87.8
Msa0124240 AT3G20880.1 34.694 147 85 5 56 193 243 387 7.94e-19 88.6
Msa0124240 AT3G57670.1 34.694 147 85 5 56 193 204 348 1.41e-18 87.4
Msa0124240 AT1G51220.1 33.333 147 87 5 56 193 165 309 3.31e-18 85.9

Find 136 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGACGGTTGCTGCTTTC+TGG 0.054131 1_3:-51913758 None:intergenic
AAATATACCCATGGTAATTT+TGG 0.155636 1_3:-51914132 None:intergenic
GAGAGGTTGGTGTGAAAATT+TGG 0.168178 1_3:-51913603 None:intergenic
AAAATTACCATGGGTATATT+TGG 0.189707 1_3:+51914134 Msa0124240:three_prime_UTR
ATTAGTGCAGGGAACATATT+TGG 0.233636 1_3:-51910340 None:intergenic
TGATGTGGCTTTGTTGGTTT+TGG 0.242334 1_3:-51913503 None:intergenic
AGGCTGTTGTGAGGAATTTA+TGG 0.247540 1_3:-51910431 None:intergenic
GTGTGAAAATTTGGAGATTC+AGG 0.253132 1_3:-51913594 None:intergenic
TGGAAACTTTGTTGTTGATT+TGG 0.272173 1_3:-51913483 None:intergenic
CAGCTCAGCATTGGCCAGTT+TGG 0.278752 1_3:+51913816 Msa0124240:CDS
AGGAAGAGAGATTGGACTAA+TGG 0.292623 1_3:-51913456 None:intergenic
GTGTATCCAAGTCTCATTCT+TGG 0.308012 1_3:+51910158 Msa0124240:five_prime_UTR
GGAAACTTTGTTGTTGATTT+GGG 0.314994 1_3:-51913482 None:intergenic
TTGTGGTGGTGATGGCTAAT+TGG 0.316995 1_3:-51913425 None:intergenic
TTTGTTGCTAATAGTGTCTT+TGG 0.317163 1_3:-51910841 None:intergenic
TTCTGAGAAAGAAGTGGAAT+TGG 0.320642 1_3:-51910365 None:intergenic
CCCAGGTGATGTGGCTTTGT+TGG 0.325238 1_3:-51913509 None:intergenic
TTGGGAAGAGGAAGAGAGAT+TGG 0.331874 1_3:-51913464 None:intergenic
GAGACCGTCTTCGTTCTTTC+CGG 0.338812 1_3:-51913898 None:intergenic
GACTAATGGGTTTGTGTTTG+TGG 0.349306 1_3:-51913442 None:intergenic
CAGTCACAACAAGCAGGTTT+TGG 0.351112 1_3:+51914059 Msa0124240:CDS
ATAGTTAATGAAATTGAAAC+AGG 0.351681 1_3:-51914251 None:intergenic
TGTGGTGGAGAGTATTATTA+AGG 0.363128 1_3:-51913563 None:intergenic
AGGGCTCTTGGAGATCTTAC+AGG 0.369272 1_3:+51911036 Msa0124240:CDS
CTAGGGTTAGGGTTTGGTTG+AGG 0.381467 1_3:-51913537 None:intergenic
GGAAGAGAGATTGGACTAAT+GGG 0.383729 1_3:-51913455 None:intergenic
TTATTAAGGTTGCTAGGGTT+AGG 0.389295 1_3:-51913549 None:intergenic
CTTACCAACGGCGGAGGAAA+TGG 0.400342 1_3:+51913939 Msa0124240:CDS
TCTATGCTGTTCATTCTGAT+TGG 0.408547 1_3:+51911124 Msa0124240:CDS
TATTAGTTACCTGGGTTACC+AGG 0.411020 1_3:-51910481 None:intergenic
TTTGATGAGGTTGGTGTTGG+TGG 0.413230 1_3:-51914016 None:intergenic
ACCAACAAAGCCACATCACC+TGG 0.418644 1_3:+51913508 Msa0124240:CDS
AGGACAGCTTCATAACTCAT+AGG 0.419863 1_3:+51913355 Msa0124240:CDS
GGGTTAGGGTTTGGTTGAGG+TGG 0.424046 1_3:-51913534 None:intergenic
TATTAAGGTTGCTAGGGTTA+GGG 0.426783 1_3:-51913548 None:intergenic
CATAACCCTTCAAGGGCTCT+TGG 0.427551 1_3:+51911024 Msa0124240:CDS
CATTTCCTCCGCCGTTGGTA+AGG 0.428942 1_3:-51913938 None:intergenic
GGTTAGGGTTTGGTTGAGGT+GGG 0.430124 1_3:-51913533 None:intergenic
AAAGCTATCACTTCAGCATC+AGG 0.433390 1_3:-51910814 None:intergenic
GGTCTCACGAGGGACTTTCT+TGG 0.435384 1_3:+51913915 Msa0124240:CDS
TAGAGGAGGAGAAGAGAGGT+TGG 0.446268 1_3:-51913616 None:intergenic
TTCCTTTGCTTCAACTTCCA+TGG 0.449693 1_3:-51910943 None:intergenic
AGAGTATTATTAAGGTTGCT+AGG 0.450934 1_3:-51913555 None:intergenic
TTTGTTGTTGATTTGGGAAG+AGG 0.451023 1_3:-51913476 None:intergenic
GTTTGGTTGAGGTGGGTCCC+AGG 0.454878 1_3:-51913526 None:intergenic
GTTTGTGTTTGTGGTGGTGA+TGG 0.463157 1_3:-51913433 None:intergenic
AGGTTGCTAGGGTTAGGGTT+TGG 0.463790 1_3:-51913543 None:intergenic
GTGTTCATCATAACCCTTCA+AGG 0.465914 1_3:+51911016 Msa0124240:CDS
TTTGCTTCAACTTCCATGGT+AGG 0.474534 1_3:-51910939 None:intergenic
GCTGAGTCACTGATCCAAAC+TGG 0.481577 1_3:-51913830 None:intergenic
AAGGATATGCTAACATTCAC+AGG 0.488242 1_3:+51913981 Msa0124240:CDS
GAGATTCAGGCTTGATGTTG+TGG 0.492741 1_3:-51913581 None:intergenic
AGGAAATGGTGGTGAGTCCT+TGG 0.504475 1_3:+51913953 Msa0124240:CDS
GGTATATAAGATGAATTGAA+TGG 0.505833 1_3:-51914157 None:intergenic
GGGTTTGTGTGATGAAGAAA+TGG 0.506838 1_3:-51913639 None:intergenic
TTTATATTCTCTAGTACCAC+AGG 0.507908 1_3:-51911163 None:intergenic
AAACAGTACTCCATGACAAA+AGG 0.510212 1_3:-51914178 None:intergenic
GAGTATTATTAAGGTTGCTA+GGG 0.512977 1_3:-51913554 None:intergenic
TGTTTCTTCTGAGAAAGAAG+TGG 0.516927 1_3:-51910371 None:intergenic
GTGGAATTGGACATTAGTGC+AGG 0.522525 1_3:-51910352 None:intergenic
GTGATGTTGGCTGCCTGTGA+TGG 0.522742 1_3:-51913787 None:intergenic
AACATGAGAGGCTGCCTCAC+CGG 0.528047 1_3:+51913879 Msa0124240:CDS
GTGTGTGAGATCTGCAACAA+GGG 0.528425 1_3:+51910871 Msa0124240:CDS
GAGGTGGGTCCCAGGTGATG+TGG 0.529471 1_3:-51913518 None:intergenic
GTCGGTGCCACCGCCATCAC+AGG 0.531410 1_3:+51913774 Msa0124240:CDS
CTTGGCCTTACCAACGGCGG+AGG 0.533245 1_3:+51913933 Msa0124240:CDS
AACAACTGTTCCTGAGTCGT+GGG 0.538679 1_3:+51914094 Msa0124240:CDS
AATTTATGGTTGAAACTAAG+TGG 0.539157 1_3:-51910417 None:intergenic
ACCACCATTTCCTCCGCCGT+TGG 0.540479 1_3:-51913943 None:intergenic
GTCCTCTCCTATGTAGCTGT+AGG 0.540553 1_3:-51910912 None:intergenic
TGAGAGCCAAGAATGAGACT+TGG 0.541869 1_3:-51910164 None:intergenic
ATGGTAGAGGAGGAGAAGAG+AGG 0.543866 1_3:-51913620 None:intergenic
CACACCTCTCAGCTCAGCAT+TGG 0.546845 1_3:+51913807 Msa0124240:CDS
GACTTTCTTGGCCTTACCAA+CGG 0.550956 1_3:+51913927 Msa0124240:CDS
CAACAACTGTTCCTGAGTCG+TGG 0.554359 1_3:+51914093 Msa0124240:CDS
ATCAAAACCTACAGCTACAT+AGG 0.556033 1_3:+51910905 Msa0124240:CDS
AGATCTCCAAGAGCCCTTGA+AGG 0.557730 1_3:-51911030 None:intergenic
TGCTGTGTGCTGACGTGGAA+GGG 0.562212 1_3:-51913684 None:intergenic
TGAGCTGAGAGGTGTGATGT+TGG 0.562319 1_3:-51913800 None:intergenic
TTGGCTGCCTGTGATGGCGG+TGG 0.566128 1_3:-51913781 None:intergenic
TAATGGGTTTGTGTTTGTGG+TGG 0.568535 1_3:-51913439 None:intergenic
TAGCATATCCTTTACATCCA+AGG 0.571843 1_3:-51913970 None:intergenic
ATACCTTCTTGTCATGGACA+TGG 0.573008 1_3:+51914311 Msa0124240:three_prime_UTR
AGAAGCCTCCCTGGTAACCC+AGG 0.574987 1_3:+51910472 Msa0124240:CDS
TGATGAACACATGAAGGCTC+AGG 0.575160 1_3:-51911003 None:intergenic
AAAGTTGCTGTGTGCTGACG+TGG 0.575946 1_3:-51913689 None:intergenic
TGTGATGGCGGTGGCACCGA+CGG 0.576064 1_3:-51913772 None:intergenic
GGACAGCTTCATAACTCATA+GGG 0.576087 1_3:+51913356 Msa0124240:CDS
GTGTGATGAAGAAATGGTAG+AGG 0.576408 1_3:-51913633 None:intergenic
AGAGAATATAAATGTGATTG+TGG 0.579986 1_3:+51911174 Msa0124240:CDS
TACCATGGAAGTTGAAGCAA+AGG 0.582854 1_3:+51910941 Msa0124240:CDS
TGCTGAAAGGTGTGGTGACA+TGG 0.583375 1_3:-51913724 None:intergenic
AGAACGAAGACGGTCTCACG+AGG 0.584329 1_3:+51913904 Msa0124240:CDS
GTGTGGTGACATGGCAGCAG+TGG 0.584847 1_3:-51913715 None:intergenic
TGGTGAGTCCTTGGATGTAA+AGG 0.590221 1_3:+51913962 Msa0124240:CDS
GTTGTTAATGTAGTGATCAA+CGG 0.595265 1_3:-51913859 None:intergenic
GGGTTATGATGAACACATGA+AGG 0.597360 1_3:-51911009 None:intergenic
GATCTCCAAGAGCCCTTGAA+GGG 0.598968 1_3:-51911029 None:intergenic
ACTCCATGTCCATGACAAGA+AGG 0.599738 1_3:-51914314 None:intergenic
AAGTCACAGTCACAACAAGC+AGG 0.612011 1_3:+51914053 Msa0124240:CDS
ATTAGTTACCTGGGTTACCA+GGG 0.616252 1_3:-51910480 None:intergenic
GGAGAGGACATAACCTACCA+TGG 0.621627 1_3:+51910926 Msa0124240:CDS
TTGCTGTGTGCTGACGTGGA+AGG 0.622053 1_3:-51913685 None:intergenic
CGTCTTCGTTCTTTCCGGTG+AGG 0.625760 1_3:-51913893 None:intergenic
TGTTCATCATAACCCTTCAA+GGG 0.626799 1_3:+51911017 Msa0124240:CDS
ATGTTGGCTGCCTGTGATGG+CGG 0.628490 1_3:-51913784 None:intergenic
CACTACAAGTTGGAGAGGAG+AGG 0.629079 1_3:-51910297 None:intergenic
AACAGCACTACAAGTTGGAG+AGG 0.629655 1_3:-51910302 None:intergenic
TGAATGGCCAAATATACCCA+TGG 0.629992 1_3:-51914141 None:intergenic
CTCCAGAAAGCAGCAACCGT+CGG 0.630036 1_3:+51913756 Msa0124240:CDS
ATTCAGGCTTGATGTTGTGG+TGG 0.630169 1_3:-51913578 None:intergenic
CACTACATTAACAACATGAG+AGG 0.631695 1_3:+51913867 Msa0124240:CDS
TGATGAAGAAATGGTAGAGG+AGG 0.633552 1_3:-51913630 None:intergenic
ACCAACGGCGGAGGAAATGG+TGG 0.634537 1_3:+51913942 Msa0124240:CDS
TTAAGAGACCAAAATTACCA+TGG 0.636860 1_3:+51914124 Msa0124240:exon
TAAGAGACCAAAATTACCAT+GGG 0.640305 1_3:+51914125 Msa0124240:exon
GGAGAAGTGCAGTTGCTGAA+AGG 0.641527 1_3:-51913737 None:intergenic
AAACATTATAGTAGAAAACA+TGG 0.647572 1_3:+51911066 Msa0124240:CDS
AGTTACCTGGGTTACCAGGG+AGG 0.652361 1_3:-51910477 None:intergenic
ACAACTGTTCCTGAGTCGTG+GGG 0.654552 1_3:+51914095 Msa0124240:CDS
AGGATATGCTAACATTCACA+GGG 0.658162 1_3:+51913982 Msa0124240:CDS
CCAACAAAGCCACATCACCT+GGG 0.660119 1_3:+51913509 Msa0124240:CDS
TGGAATTGGACATTAGTGCA+GGG 0.664460 1_3:-51910351 None:intergenic
AACCTACAGCTACATAGGAG+AGG 0.665795 1_3:+51910910 Msa0124240:CDS
TGTGTGTGAGATCTGCAACA+AGG 0.672147 1_3:+51910870 Msa0124240:CDS
GAACGAAGACGGTCTCACGA+GGG 0.672722 1_3:+51913905 Msa0124240:CDS
CTCACCGGAAAGAACGAAGA+CGG 0.675316 1_3:+51913894 Msa0124240:CDS
CAACTGTTCCTGAGTCGTGG+GGG 0.675581 1_3:+51914096 Msa0124240:CDS
CTGGCCAATGCTGAGCTGAG+AGG 0.682127 1_3:-51913811 None:intergenic
GAAGCAAAGGAACAACAAAG+AGG 0.688495 1_3:+51910954 Msa0124240:CDS
TTTCTTGGCCTTACCAACGG+CGG 0.703626 1_3:+51913930 Msa0124240:CDS
AAAGCTCACTCTAAAACCTG+TGG 0.713942 1_3:+51911147 Msa0124240:CDS
AGTGCAGTTGCTGAAAGGTG+TGG 0.715797 1_3:-51913732 None:intergenic
TAGTTAATGAAATTGAAACA+GGG 0.721599 1_3:-51914250 None:intergenic
GATATGCTAACATTCACAGG+GGG 0.759370 1_3:+51913984 Msa0124240:CDS
GGATATGCTAACATTCACAG+GGG 0.776190 1_3:+51913983 Msa0124240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAATATTATGTTGA+AGG - chr1_3:51912473-51912492 None:intergenic 10.0%
!! TTAAAAATTCATAAATGAAT+TGG + chr1_3:51912817-51912836 Msa0124240:intron 10.0%
!! TAAAAATTCATAAATGAATT+GGG + chr1_3:51912818-51912837 Msa0124240:intron 10.0%
!!! TTTTTGTTTGATTCAAAATA+TGG - chr1_3:51910224-51910243 None:intergenic 15.0%
!! ATTTATAACATGTTAAATTG+TGG + chr1_3:51910523-51910542 Msa0124240:intron 15.0%
!! TGGATTAATTTAATAAAACA+TGG - chr1_3:51911288-51911307 None:intergenic 15.0%
!! ATAGAAACATAAGAAAAAAA+TGG - chr1_3:51911308-51911327 None:intergenic 15.0%
!!! CAAATCATAATTTTAAATTG+CGG + chr1_3:51911355-51911374 Msa0124240:intron 15.0%
!! AAAAGAATAATTATGAAAAC+AGG - chr1_3:51911645-51911664 None:intergenic 15.0%
!!! TCATTTATGAATTTTTAACA+TGG - chr1_3:51912815-51912834 None:intergenic 15.0%
!! TATTCTAAATGTAATTACTA+GGG - chr1_3:51913000-51913019 None:intergenic 15.0%
!! TTATTCTAAATGTAATTACT+AGG - chr1_3:51913001-51913020 None:intergenic 15.0%
!!! AACAATAAATAAACCTTTTT+AGG + chr1_3:51913027-51913046 Msa0124240:intron 15.0%
!!! ACAATAAATAAACCTTTTTA+GGG + chr1_3:51913028-51913047 Msa0124240:intron 15.0%
!! TAACTAATTATTAGTTACCT+GGG - chr1_3:51910492-51910511 None:intergenic 20.0%
!! TTAACTAATTATTAGTTACC+TGG - chr1_3:51910493-51910512 None:intergenic 20.0%
!!! TTACATGTGATTTTAAATTG+CGG - chr1_3:51910632-51910651 None:intergenic 20.0%
!! TATACTAAACAATTGAACTA+AGG - chr1_3:51910747-51910766 None:intergenic 20.0%
!! AAACATTATAGTAGAAAACA+TGG + chr1_3:51911066-51911085 Msa0124240:CDS 20.0%
!!! TCTCTAAAACATTTATATTG+CGG - chr1_3:51911399-51911418 None:intergenic 20.0%
!! ATTTAATCTCTACCAAATTA+TGG - chr1_3:51911549-51911568 None:intergenic 20.0%
!!! TAGTCTTATAATTATGATGA+TGG - chr1_3:51912437-51912456 None:intergenic 20.0%
!! ATATTATGTTGAAGGATTAT+TGG - chr1_3:51912465-51912484 None:intergenic 20.0%
!! TAACTAAATAAATAACACCA+TGG + chr1_3:51913235-51913254 Msa0124240:intron 20.0%
!! TAGTTAATGAAATTGAAACA+GGG - chr1_3:51914253-51914272 None:intergenic 20.0%
!! ATAGTTAATGAAATTGAAAC+AGG - chr1_3:51914254-51914273 None:intergenic 20.0%
! AATTTATGGTTGAAACTAAG+TGG - chr1_3:51910420-51910439 None:intergenic 25.0%
!! CCATAATATAAAGGATTTTG+AGG - chr1_3:51910586-51910605 None:intergenic 25.0%
! CCTCAAAATCCTTTATATTA+TGG + chr1_3:51910583-51910602 Msa0124240:intron 25.0%
! AGAGAATATAAATGTGATTG+TGG + chr1_3:51911174-51911193 Msa0124240:CDS 25.0%
!!! TGTTTTAGAGATTTGTGTAA+CGG + chr1_3:51911408-51911427 Msa0124240:intron 25.0%
!!! ATAGTTTTAGGTTACGATTA+CGG - chr1_3:51911511-51911530 None:intergenic 25.0%
!! TGTTTTCTGAATCCTAAAAA+AGG + chr1_3:51911803-51911822 Msa0124240:intron 25.0%
! CAGTAGTAGATAAAAACAAA+AGG - chr1_3:51911878-51911897 None:intergenic 25.0%
!! TTTCCAATTTTAAATGTGTC+AGG + chr1_3:51912030-51912049 Msa0124240:intron 25.0%
!! TTCCAATTTTAAATGTGTCA+GGG + chr1_3:51912031-51912050 Msa0124240:intron 25.0%
! TATACACTCTTATGTTGATA+TGG + chr1_3:51912095-51912114 Msa0124240:intron 25.0%
! AAGTTCAGAGAAAAATACTA+TGG - chr1_3:51912256-51912275 None:intergenic 25.0%
!!! TCTTATAATTATGATGATGG+TGG - chr1_3:51912434-51912453 None:intergenic 25.0%
! AACATAATTTATGTCCCAAT+TGG + chr1_3:51912567-51912586 Msa0124240:intron 25.0%
!!! AACGAATTTGATTTTGAGAA+GGG - chr1_3:51912745-51912764 None:intergenic 25.0%
!!! ATTGCTGTATTTTGAACAAT+CGG + chr1_3:51912844-51912863 Msa0124240:intron 25.0%
! TAGATGACTCAAATTATGAT+TGG + chr1_3:51912921-51912940 Msa0124240:intron 25.0%
! AATTATGATTGGATAAATGC+AGG + chr1_3:51912932-51912951 Msa0124240:intron 25.0%
! ATGCAGGATAATTTCAATTT+AGG + chr1_3:51912948-51912967 Msa0124240:intron 25.0%
! TGCAGGATAATTTCAATTTA+GGG + chr1_3:51912949-51912968 Msa0124240:intron 25.0%
!!! TACTAGTACATTTTAGAGAA+GGG + chr1_3:51913057-51913076 Msa0124240:intron 25.0%
!!! CTAGACTTTTTAGGTTAATT+TGG + chr1_3:51913087-51913106 Msa0124240:intron 25.0%
!! TTTAGGTTAATTTGGTTTAG+AGG + chr1_3:51913095-51913114 Msa0124240:intron 25.0%
! ATAAAAAAGAGCCTCTAATA+TGG - chr1_3:51913216-51913235 None:intergenic 25.0%
!! ATGATGTCATTATGCTTTTA+GGG - chr1_3:51913662-51913681 None:intergenic 25.0%
!! AAATATACCCATGGTAATTT+TGG - chr1_3:51914135-51914154 None:intergenic 25.0%
! AAAATTACCATGGGTATATT+TGG + chr1_3:51914134-51914153 Msa0124240:three_prime_UTR 25.0%
! GGTATATAAGATGAATTGAA+TGG - chr1_3:51914160-51914179 None:intergenic 25.0%
!! ATCTTATATACCTTTTGTCA+TGG + chr1_3:51914168-51914187 Msa0124240:three_prime_UTR 25.0%
!! TTTTATATACCTTCTTGTCA+TGG + chr1_3:51914305-51914324 Msa0124240:three_prime_UTR 25.0%
AAAGAGAAGAGAAAAAAGCT+AGG - chr1_3:51910274-51910293 None:intergenic 30.0%
!!! CTTTTTTTCTTGGACTTTTG+AGG - chr1_3:51910454-51910473 None:intergenic 30.0%
TTTGTTGCTAATAGTGTCTT+TGG - chr1_3:51910844-51910863 None:intergenic 30.0%
GAAAACATGGTGAGAAAAAA+TGG + chr1_3:51911079-51911098 Msa0124240:CDS 30.0%
TTTATATTCTCTAGTACCAC+AGG - chr1_3:51911166-51911185 None:intergenic 30.0%
AGTACTATACCTGGAAAAAA+GGG - chr1_3:51911202-51911221 None:intergenic 30.0%
TAGTACTATACCTGGAAAAA+AGG - chr1_3:51911203-51911222 None:intergenic 30.0%
AACAATAAGGCAAATGCAAT+CGG - chr1_3:51911443-51911462 None:intergenic 30.0%
TTGCAGCACAATAAACAATA+AGG - chr1_3:51911456-51911475 None:intergenic 30.0%
AATTATGGTAAATACTCCGT+AGG - chr1_3:51911534-51911553 None:intergenic 30.0%
! ACGGAGTATTTACCATAATT+TGG + chr1_3:51911534-51911553 Msa0124240:intron 30.0%
CCTTTCATGAAACAAATTCA+AGG - chr1_3:51911713-51911732 None:intergenic 30.0%
! CCTTGAATTTGTTTCATGAA+AGG + chr1_3:51911710-51911729 Msa0124240:intron 30.0%
ATTCTAGTCTCTTTAGCAAT+TGG - chr1_3:51911773-51911792 None:intergenic 30.0%
!!! ACATTCATTTGGCCTTTTTT+AGG - chr1_3:51911818-51911837 None:intergenic 30.0%
! AGATAAAAACAAAAGGTGTG+TGG - chr1_3:51911871-51911890 None:intergenic 30.0%
CTTCTATAACTTCATTACAG+TGG + chr1_3:51912334-51912353 Msa0124240:intron 30.0%
ATAACTTCATTACAGTGGAT+TGG + chr1_3:51912339-51912358 Msa0124240:intron 30.0%
GGGACATAAATTATGTTACA+GGG - chr1_3:51912564-51912583 None:intergenic 30.0%
TGGGACATAAATTATGTTAC+AGG - chr1_3:51912565-51912584 None:intergenic 30.0%
!! CAACGAATTTGATTTTGAGA+AGG - chr1_3:51912746-51912765 None:intergenic 30.0%
!! CTACTAGTACATTTTAGAGA+AGG + chr1_3:51913056-51913075 Msa0124240:intron 30.0%
!! TCACTTGTGTTTTTATTGAG+GGG - chr1_3:51913158-51913177 None:intergenic 30.0%
!! GTCACTTGTGTTTTTATTGA+GGG - chr1_3:51913159-51913178 None:intergenic 30.0%
!! TGTCACTTGTGTTTTTATTG+AGG - chr1_3:51913160-51913179 None:intergenic 30.0%
TAAAAACACAAGTGACATGT+TGG + chr1_3:51913163-51913182 Msa0124240:intron 30.0%
! CTAATATGGTCTTGATTCAA+TGG - chr1_3:51913202-51913221 None:intergenic 30.0%
TTGAATCAAGACCATATTAG+AGG + chr1_3:51913202-51913221 Msa0124240:intron 30.0%
TTGCATCATACTTATAACCA+TGG - chr1_3:51913255-51913274 None:intergenic 30.0%
! TTTTATTGTGTGAAAACTGC+AGG + chr1_3:51913331-51913350 Msa0124240:intron 30.0%
!! GGAAACTTTGTTGTTGATTT+GGG - chr1_3:51913485-51913504 None:intergenic 30.0%
!! TGGAAACTTTGTTGTTGATT+TGG - chr1_3:51913486-51913505 None:intergenic 30.0%
GAGTATTATTAAGGTTGCTA+GGG - chr1_3:51913557-51913576 None:intergenic 30.0%
! AGAGTATTATTAAGGTTGCT+AGG - chr1_3:51913558-51913577 None:intergenic 30.0%
! GATGATGTCATTATGCTTTT+AGG - chr1_3:51913663-51913682 None:intergenic 30.0%
GTTGTTAATGTAGTGATCAA+CGG - chr1_3:51913862-51913881 None:intergenic 30.0%
TTAAGAGACCAAAATTACCA+TGG + chr1_3:51914124-51914143 Msa0124240:exon 30.0%
TAAGAGACCAAAATTACCAT+GGG + chr1_3:51914125-51914144 Msa0124240:exon 30.0%
AGAAGAGAAAAAAGCTAGGT+AGG - chr1_3:51910270-51910289 None:intergenic 35.0%
AGAAAAACAGCACTACAAGT+TGG - chr1_3:51910310-51910329 None:intergenic 35.0%
ATTAGTGCAGGGAACATATT+TGG - chr1_3:51910343-51910362 None:intergenic 35.0%
! TTCTGAGAAAGAAGTGGAAT+TGG - chr1_3:51910368-51910387 None:intergenic 35.0%
! TGTTTCTTCTGAGAAAGAAG+TGG - chr1_3:51910374-51910393 None:intergenic 35.0%
TAGTTGCGGCCATAATATAA+AGG - chr1_3:51910595-51910614 None:intergenic 35.0%
TCTGCAACTGTAATTAGTTG+CGG - chr1_3:51910609-51910628 None:intergenic 35.0%
ATCAAAACCTACAGCTACAT+AGG + chr1_3:51910905-51910924 Msa0124240:CDS 35.0%
TGTTCATCATAACCCTTCAA+GGG + chr1_3:51911017-51911036 Msa0124240:CDS 35.0%
TCTATGCTGTTCATTCTGAT+TGG + chr1_3:51911124-51911143 Msa0124240:CDS 35.0%
AGCAGTAATAGTACTATACC+TGG - chr1_3:51911211-51911230 None:intergenic 35.0%
TTTGCAGCATAACAACAACT+AGG + chr1_3:51911484-51911503 Msa0124240:intron 35.0%
CGTAACCTAAAACTATCCTA+CGG + chr1_3:51911515-51911534 Msa0124240:intron 35.0%
! ATACTCCGTAGGATAGTTTT+AGG - chr1_3:51911523-51911542 None:intergenic 35.0%
TGAAAGGTTGCATGAAATTG+TGG + chr1_3:51911726-51911745 Msa0124240:intron 35.0%
AAAAAGGCCAAATGAATGTG+CGG + chr1_3:51911819-51911838 Msa0124240:intron 35.0%
! CACCCTGACACATTTAAAAT+TGG - chr1_3:51912036-51912055 None:intergenic 35.0%
ACTCTTATGTTGATATGGAG+TGG + chr1_3:51912100-51912119 Msa0124240:intron 35.0%
CTCTTATGTTGATATGGAGT+GGG + chr1_3:51912101-51912120 Msa0124240:intron 35.0%
! TGCAGTCTCTAAGAAAATGA+TGG + chr1_3:51912124-51912143 Msa0124240:intron 35.0%
!! TTACAGTGGATTGGATTACA+TGG + chr1_3:51912348-51912367 Msa0124240:intron 35.0%
GTTTGCATGCATAAAGCAAA+AGG + chr1_3:51912500-51912519 Msa0124240:intron 35.0%
TATGCATGATGCAATTGATG+TGG - chr1_3:51912530-51912549 None:intergenic 35.0%
GAAATCATGCATGGGATAAA+GGG - chr1_3:51912637-51912656 None:intergenic 35.0%
AGAACTTCACAAGTCTTCTT+TGG + chr1_3:51912690-51912709 Msa0124240:intron 35.0%
! TTTTGAACAATCGGTCACAT+TGG + chr1_3:51912853-51912872 Msa0124240:intron 35.0%
! GGTTGAAAGCTAGACTTTTT+AGG + chr1_3:51913078-51913097 Msa0124240:intron 35.0%
!! TTTGTTGTTGATTTGGGAAG+AGG - chr1_3:51913479-51913498 None:intergenic 35.0%
TATTAAGGTTGCTAGGGTTA+GGG - chr1_3:51913551-51913570 None:intergenic 35.0%
TTATTAAGGTTGCTAGGGTT+AGG - chr1_3:51913552-51913571 None:intergenic 35.0%
!! TGTGGTGGAGAGTATTATTA+AGG - chr1_3:51913566-51913585 None:intergenic 35.0%
GTGTGAAAATTTGGAGATTC+AGG - chr1_3:51913597-51913616 None:intergenic 35.0%
CACTACATTAACAACATGAG+AGG + chr1_3:51913867-51913886 Msa0124240:CDS 35.0%
TAGCATATCCTTTACATCCA+AGG - chr1_3:51913973-51913992 None:intergenic 35.0%
AAGGATATGCTAACATTCAC+AGG + chr1_3:51913981-51914000 Msa0124240:CDS 35.0%
AGGATATGCTAACATTCACA+GGG + chr1_3:51913982-51914001 Msa0124240:CDS 35.0%
!!! TCATCATGTTTTGATGAGGT+TGG - chr1_3:51914028-51914047 None:intergenic 35.0%
!!! AGCATCATCATGTTTTGATG+AGG - chr1_3:51914032-51914051 None:intergenic 35.0%
!!! AAGCAGGTTTTGGTTTTCTT+GGG + chr1_3:51914069-51914088 Msa0124240:CDS 35.0%
AAACAGTACTCCATGACAAA+AGG - chr1_3:51914181-51914200 None:intergenic 35.0%
GTGTATCCAAGTCTCATTCT+TGG + chr1_3:51910158-51910177 Msa0124240:five_prime_UTR 40.0%
GCTCTCAAAAAGTAGCTATC+AGG + chr1_3:51910180-51910199 Msa0124240:five_prime_UTR 40.0%
TGGAATTGGACATTAGTGCA+GGG - chr1_3:51910354-51910373 None:intergenic 40.0%
AGGCTGTTGTGAGGAATTTA+TGG - chr1_3:51910434-51910453 None:intergenic 40.0%
!!! AGGGAGGCTTCTTTTTTTCT+TGG - chr1_3:51910464-51910483 None:intergenic 40.0%
AAGAAAAAAAGAAGCCTCCC+TGG + chr1_3:51910463-51910482 Msa0124240:CDS 40.0%
ATTAGTTACCTGGGTTACCA+GGG - chr1_3:51910483-51910502 None:intergenic 40.0%
TATTAGTTACCTGGGTTACC+AGG - chr1_3:51910484-51910503 None:intergenic 40.0%
TTAAATTGTGGTCGCAGTTG+CGG + chr1_3:51910535-51910554 Msa0124240:intron 40.0%
AAAGCTATCACTTCAGCATC+AGG - chr1_3:51910817-51910836 None:intergenic 40.0%
TTTGCTTCAACTTCCATGGT+AGG - chr1_3:51910942-51910961 None:intergenic 40.0%
TACCATGGAAGTTGAAGCAA+AGG + chr1_3:51910941-51910960 Msa0124240:CDS 40.0%
TTCCTTTGCTTCAACTTCCA+TGG - chr1_3:51910946-51910965 None:intergenic 40.0%
GAAGCAAAGGAACAACAAAG+AGG + chr1_3:51910954-51910973 Msa0124240:CDS 40.0%
GGGTTATGATGAACACATGA+AGG - chr1_3:51911012-51911031 None:intergenic 40.0%
GTGTTCATCATAACCCTTCA+AGG + chr1_3:51911016-51911035 Msa0124240:CDS 40.0%
!! AAAGCTCACTCTAAAACCTG+TGG + chr1_3:51911147-51911166 Msa0124240:CDS 40.0%
!!! ATTGTGGTACCCTTTTTTCC+AGG + chr1_3:51911190-51911209 Msa0124240:CDS 40.0%
TTAACTGCCGCACATTCATT+TGG - chr1_3:51911829-51911848 None:intergenic 40.0%
!! ATGATGATGGTGGAAGTCTT+GGG - chr1_3:51912424-51912443 None:intergenic 40.0%
!! TATGATGATGGTGGAAGTCT+TGG - chr1_3:51912425-51912444 None:intergenic 40.0%
! TCAATGGGTTTGGACCAATT+GGG - chr1_3:51912584-51912603 None:intergenic 40.0%
! GATTAACGTGTCAATGGGTT+TGG - chr1_3:51912594-51912613 None:intergenic 40.0%
! ACACGGATTAACGTGTCAAT+GGG - chr1_3:51912599-51912618 None:intergenic 40.0%
! TACACGGATTAACGTGTCAA+TGG - chr1_3:51912600-51912619 None:intergenic 40.0%
GGAAATCATGCATGGGATAA+AGG - chr1_3:51912638-51912657 None:intergenic 40.0%
AGGTAAGGGAAATCATGCAT+GGG - chr1_3:51912645-51912664 None:intergenic 40.0%
AAGGTAAGGGAAATCATGCA+TGG - chr1_3:51912646-51912665 None:intergenic 40.0%
! TTCCCTTACCTTTTTGCCAA+TGG + chr1_3:51912654-51912673 Msa0124240:intron 40.0%
! TCCCTTACCTTTTTGCCAAT+GGG + chr1_3:51912655-51912674 Msa0124240:intron 40.0%
! CTAGGGATGAACGAGTTTTA+AGG - chr1_3:51912983-51913002 None:intergenic 40.0%
!! CTAGTAGAAGCACCCTAAAA+AGG - chr1_3:51913043-51913062 None:intergenic 40.0%
ATTGTGTGAAAACTGCAGGA+AGG + chr1_3:51913335-51913354 Msa0124240:intron 40.0%
AGGACAGCTTCATAACTCAT+AGG + chr1_3:51913355-51913374 Msa0124240:CDS 40.0%
GGACAGCTTCATAACTCATA+GGG + chr1_3:51913356-51913375 Msa0124240:CDS 40.0%
!! TAATGGGTTTGTGTTTGTGG+TGG - chr1_3:51913442-51913461 None:intergenic 40.0%
!! GACTAATGGGTTTGTGTTTG+TGG - chr1_3:51913445-51913464 None:intergenic 40.0%
GGAAGAGAGATTGGACTAAT+GGG - chr1_3:51913458-51913477 None:intergenic 40.0%
AGGAAGAGAGATTGGACTAA+TGG - chr1_3:51913459-51913478 None:intergenic 40.0%
!!! TGATGTGGCTTTGTTGGTTT+TGG - chr1_3:51913506-51913525 None:intergenic 40.0%
!! GAGAGGTTGGTGTGAAAATT+TGG - chr1_3:51913606-51913625 None:intergenic 40.0%
TGATGAAGAAATGGTAGAGG+AGG - chr1_3:51913633-51913652 None:intergenic 40.0%
GTGTGATGAAGAAATGGTAG+AGG - chr1_3:51913636-51913655 None:intergenic 40.0%
GGGTTTGTGTGATGAAGAAA+TGG - chr1_3:51913642-51913661 None:intergenic 40.0%
GGATATGCTAACATTCACAG+GGG + chr1_3:51913983-51914002 Msa0124240:CDS 40.0%
GATATGCTAACATTCACAGG+GGG + chr1_3:51913984-51914003 Msa0124240:CDS 40.0%
!!! TGTTTTGATGAGGTTGGTGT+TGG - chr1_3:51914022-51914041 None:intergenic 40.0%
!!! CAAGCAGGTTTTGGTTTTCT+TGG + chr1_3:51914068-51914087 Msa0124240:CDS 40.0%
TGAATGGCCAAATATACCCA+TGG - chr1_3:51914144-51914163 None:intergenic 40.0%
ATACCTTCTTGTCATGGACA+TGG + chr1_3:51914311-51914330 Msa0124240:three_prime_UTR 40.0%
TGAGAGCCAAGAATGAGACT+TGG - chr1_3:51910167-51910186 None:intergenic 45.0%
! AACAGCACTACAAGTTGGAG+AGG - chr1_3:51910305-51910324 None:intergenic 45.0%
GTGGAATTGGACATTAGTGC+AGG - chr1_3:51910355-51910374 None:intergenic 45.0%
TGTGTGTGAGATCTGCAACA+AGG + chr1_3:51910870-51910889 Msa0124240:CDS 45.0%
GTGTGTGAGATCTGCAACAA+GGG + chr1_3:51910871-51910890 Msa0124240:CDS 45.0%
AACCTACAGCTACATAGGAG+AGG + chr1_3:51910910-51910929 Msa0124240:CDS 45.0%
TGATGAACACATGAAGGCTC+AGG - chr1_3:51911006-51911025 None:intergenic 45.0%
! GTCAATGGGTTTGGACCAAT+TGG - chr1_3:51912585-51912604 None:intergenic 45.0%
ATGCATGGGATAAAGGGAGA+GGG - chr1_3:51912631-51912650 None:intergenic 45.0%
CCCCATTGGCAAAAAGGTAA+GGG - chr1_3:51912659-51912678 None:intergenic 45.0%
! CCCTTACCTTTTTGCCAATG+GGG + chr1_3:51912656-51912675 Msa0124240:intron 45.0%
AATGTGCCCCATTGGCAAAA+AGG - chr1_3:51912665-51912684 None:intergenic 45.0%
TCTTGTAGAATGTGCCCCAT+TGG - chr1_3:51912673-51912692 None:intergenic 45.0%
!! TTGTGGTGGTGATGGCTAAT+TGG - chr1_3:51913428-51913447 None:intergenic 45.0%
! GTTTGTGTTTGTGGTGGTGA+TGG - chr1_3:51913436-51913455 None:intergenic 45.0%
TTGGGAAGAGGAAGAGAGAT+TGG - chr1_3:51913467-51913486 None:intergenic 45.0%
ATTCAGGCTTGATGTTGTGG+TGG - chr1_3:51913581-51913600 None:intergenic 45.0%
GAGATTCAGGCTTGATGTTG+TGG - chr1_3:51913584-51913603 None:intergenic 45.0%
!! GACTTTCTTGGCCTTACCAA+CGG + chr1_3:51913927-51913946 Msa0124240:CDS 45.0%
TGGTGAGTCCTTGGATGTAA+AGG + chr1_3:51913962-51913981 Msa0124240:CDS 45.0%
!! TTTGATGAGGTTGGTGTTGG+TGG - chr1_3:51914019-51914038 None:intergenic 45.0%
AAGTCACAGTCACAACAAGC+AGG + chr1_3:51914053-51914072 Msa0124240:CDS 45.0%
! CAGTCACAACAAGCAGGTTT+TGG + chr1_3:51914059-51914078 Msa0124240:CDS 45.0%
AACAACTGTTCCTGAGTCGT+GGG + chr1_3:51914094-51914113 Msa0124240:CDS 45.0%
ACTCCATGTCCATGACAAGA+AGG - chr1_3:51914317-51914336 None:intergenic 45.0%
! CACTACAAGTTGGAGAGGAG+AGG - chr1_3:51910300-51910319 None:intergenic 50.0%
!!! GGACTTTTGAGGCTGTTGTG+AGG - chr1_3:51910443-51910462 None:intergenic 50.0%
GTCCTCTCCTATGTAGCTGT+AGG - chr1_3:51910915-51910934 None:intergenic 50.0%
GGAGAGGACATAACCTACCA+TGG + chr1_3:51910926-51910945 Msa0124240:CDS 50.0%
CATAACCCTTCAAGGGCTCT+TGG + chr1_3:51911024-51911043 Msa0124240:CDS 50.0%
GATCTCCAAGAGCCCTTGAA+GGG - chr1_3:51911032-51911051 None:intergenic 50.0%
AGATCTCCAAGAGCCCTTGA+AGG - chr1_3:51911033-51911052 None:intergenic 50.0%
AGGGCTCTTGGAGATCTTAC+AGG + chr1_3:51911036-51911055 Msa0124240:CDS 50.0%
GGAGAGGGGACTAATGTACA+CGG - chr1_3:51912616-51912635 None:intergenic 50.0%
TGCATGGGATAAAGGGAGAG+GGG - chr1_3:51912630-51912649 None:intergenic 50.0%
CATGCATGGGATAAAGGGAG+AGG - chr1_3:51912632-51912651 None:intergenic 50.0%
GCCCCATTGGCAAAAAGGTA+AGG - chr1_3:51912660-51912679 None:intergenic 50.0%
ACCAACAAAGCCACATCACC+TGG + chr1_3:51913508-51913527 Msa0124240:CDS 50.0%
CCAACAAAGCCACATCACCT+GGG + chr1_3:51913509-51913528 Msa0124240:CDS 50.0%
! GGTTAGGGTTTGGTTGAGGT+GGG - chr1_3:51913536-51913555 None:intergenic 50.0%
! CTAGGGTTAGGGTTTGGTTG+AGG - chr1_3:51913540-51913559 None:intergenic 50.0%
AGGTTGCTAGGGTTAGGGTT+TGG - chr1_3:51913546-51913565 None:intergenic 50.0%
TAGAGGAGGAGAAGAGAGGT+TGG - chr1_3:51913619-51913638 None:intergenic 50.0%
ATGGTAGAGGAGGAGAAGAG+AGG - chr1_3:51913623-51913642 None:intergenic 50.0%
! AAAGTTGCTGTGTGCTGACG+TGG - chr1_3:51913692-51913711 None:intergenic 50.0%
! TGCTGAAAGGTGTGGTGACA+TGG - chr1_3:51913727-51913746 None:intergenic 50.0%
AGTGCAGTTGCTGAAAGGTG+TGG - chr1_3:51913735-51913754 None:intergenic 50.0%
! GGAGAAGTGCAGTTGCTGAA+AGG - chr1_3:51913740-51913759 None:intergenic 50.0%
! TGAGCTGAGAGGTGTGATGT+TGG - chr1_3:51913803-51913822 None:intergenic 50.0%
GCTGAGTCACTGATCCAAAC+TGG - chr1_3:51913833-51913852 None:intergenic 50.0%
CTCACCGGAAAGAACGAAGA+CGG + chr1_3:51913894-51913913 Msa0124240:CDS 50.0%
GAGACCGTCTTCGTTCTTTC+CGG - chr1_3:51913901-51913920 None:intergenic 50.0%
!! TTTCTTGGCCTTACCAACGG+CGG + chr1_3:51913930-51913949 Msa0124240:CDS 50.0%
! AGGAAATGGTGGTGAGTCCT+TGG + chr1_3:51913953-51913972 Msa0124240:CDS 50.0%
CAACAACTGTTCCTGAGTCG+TGG + chr1_3:51914093-51914112 Msa0124240:CDS 50.0%
ACAACTGTTCCTGAGTCGTG+GGG + chr1_3:51914095-51914114 Msa0124240:CDS 50.0%
AGTTACCTGGGTTACCAGGG+AGG - chr1_3:51910480-51910499 None:intergenic 55.0%
!! CCCAGGTGATGTGGCTTTGT+TGG - chr1_3:51913512-51913531 None:intergenic 55.0%
! GGGTTAGGGTTTGGTTGAGG+TGG - chr1_3:51913537-51913556 None:intergenic 55.0%
! TGCTGTGTGCTGACGTGGAA+GGG - chr1_3:51913687-51913706 None:intergenic 55.0%
! TTGCTGTGTGCTGACGTGGA+AGG - chr1_3:51913688-51913707 None:intergenic 55.0%
CTCCAGAAAGCAGCAACCGT+CGG + chr1_3:51913756-51913775 Msa0124240:CDS 55.0%
! ATGTTGGCTGCCTGTGATGG+CGG - chr1_3:51913787-51913806 None:intergenic 55.0%
! GTGATGTTGGCTGCCTGTGA+TGG - chr1_3:51913790-51913809 None:intergenic 55.0%
CACACCTCTCAGCTCAGCAT+TGG + chr1_3:51913807-51913826 Msa0124240:CDS 55.0%
!! CAGCTCAGCATTGGCCAGTT+TGG + chr1_3:51913816-51913835 Msa0124240:CDS 55.0%
AACATGAGAGGCTGCCTCAC+CGG + chr1_3:51913879-51913898 Msa0124240:CDS 55.0%
CGTCTTCGTTCTTTCCGGTG+AGG - chr1_3:51913896-51913915 None:intergenic 55.0%
AGAACGAAGACGGTCTCACG+AGG + chr1_3:51913904-51913923 Msa0124240:CDS 55.0%
GAACGAAGACGGTCTCACGA+GGG + chr1_3:51913905-51913924 Msa0124240:CDS 55.0%
GGTCTCACGAGGGACTTTCT+TGG + chr1_3:51913915-51913934 Msa0124240:CDS 55.0%
CATTTCCTCCGCCGTTGGTA+AGG - chr1_3:51913941-51913960 None:intergenic 55.0%
CTTACCAACGGCGGAGGAAA+TGG + chr1_3:51913939-51913958 Msa0124240:CDS 55.0%
CAACTGTTCCTGAGTCGTGG+GGG + chr1_3:51914096-51914115 Msa0124240:CDS 55.0%
TAACAGTTCCCCCACGACTC+AGG - chr1_3:51914107-51914126 None:intergenic 55.0%
AGAAGCCTCCCTGGTAACCC+AGG + chr1_3:51910472-51910491 Msa0124240:CDS 60.0%
GTTTGGTTGAGGTGGGTCCC+AGG - chr1_3:51913529-51913548 None:intergenic 60.0%
GTGTGGTGACATGGCAGCAG+TGG - chr1_3:51913718-51913737 None:intergenic 60.0%
!! CACCGACGGTTGCTGCTTTC+TGG - chr1_3:51913761-51913780 None:intergenic 60.0%
CTGGCCAATGCTGAGCTGAG+AGG - chr1_3:51913814-51913833 None:intergenic 60.0%
ACCAACGGCGGAGGAAATGG+TGG + chr1_3:51913942-51913961 Msa0124240:CDS 60.0%
ACCACCATTTCCTCCGCCGT+TGG - chr1_3:51913946-51913965 None:intergenic 60.0%
GAGGTGGGTCCCAGGTGATG+TGG - chr1_3:51913521-51913540 None:intergenic 65.0%
!! TGTGATGGCGGTGGCACCGA+CGG - chr1_3:51913775-51913794 None:intergenic 65.0%
!! TTGGCTGCCTGTGATGGCGG+TGG - chr1_3:51913784-51913803 None:intergenic 65.0%
!! CTTGGCCTTACCAACGGCGG+AGG + chr1_3:51913933-51913952 Msa0124240:CDS 65.0%
!! GTCGGTGCCACCGCCATCAC+AGG + chr1_3:51913774-51913793 Msa0124240:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51910137 51914353 51910137 ID=Msa0124240;Name=Msa0124240
chr1_3 mRNA 51910137 51914353 51910137 ID=Msa0124240-mRNA-1;Parent=Msa0124240;Name=Msa0124240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=209|1|1|1|1|1|3|226|440
chr1_3 exon 51910137 51910493 51910137 ID=Msa0124240-mRNA-1:exon:15865;Parent=Msa0124240-mRNA-1
chr1_3 exon 51910812 51911211 51910812 ID=Msa0124240-mRNA-1:exon:15866;Parent=Msa0124240-mRNA-1
chr1_3 exon 51913353 51914353 51913353 ID=Msa0124240-mRNA-1:exon:15867;Parent=Msa0124240-mRNA-1
chr1_3 five_prime_UTR 51910137 51910345 51910137 ID=Msa0124240-mRNA-1:five_prime_utr;Parent=Msa0124240-mRNA-1
chr1_3 CDS 51910346 51910493 51910346 ID=Msa0124240-mRNA-1:cds;Parent=Msa0124240-mRNA-1
chr1_3 CDS 51910812 51911211 51910812 ID=Msa0124240-mRNA-1:cds;Parent=Msa0124240-mRNA-1
chr1_3 CDS 51913353 51914127 51913353 ID=Msa0124240-mRNA-1:cds;Parent=Msa0124240-mRNA-1
chr1_3 three_prime_UTR 51914128 51914353 51914128 ID=Msa0124240-mRNA-1:three_prime_utr;Parent=Msa0124240-mRNA-1
Gene Sequence

>Msa0124240

ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAGTGTCTCTTCTACTAGATTAAACCACTTAGTTTCAACCATAAATTCCTCACAACAGCCTCAAAAGTCCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCTGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCTGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCAACAAAGCCACATCACCTGGGACCCACCTCAACCAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCCTCCTCTACCATTTCTTCATCACACAAACCCTAAAAGCATAATGACATCATCACCCTTCCACGTCAGCACACAGCAACTTTCTTCCACTGCTGCCATGTCACCACACCTTTCAGCAACTGCACTTCTCCAGAAAGCAGCAACCGTCGGTGCCACCGCCATCACAGGCAGCCAACATCACACCTCTCAGCTCAGCATTGGCCAGTTTGGATCAGTGACTCAGCTCAACTCCGTTGATCACTACATTAACAACATGAGAGGCTGCCTCACCGGAAAGAACGAAGACGGTCTCACGAGGGACTTTCTTGGCCTTACCAACGGCGGAGGAAATGGTGGTGAGTCCTTGGATGTAAAGGATATGCTAACATTCACAGGGGGTGTAGAATACCACCAACACCAACCTCATCAAAACATGATGATGCTCAAGTCACAGTCACAACAAGCAGGTTTTGGTTTTCTTGGGACAACAACTGTTCCTGAGTCGTGGGGGAACTGTTAA
Protein sequence

>Msa0124240

MFPALMSNSTSFSEETSVSSTRLNHLVSTINSSQQPQKSKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQSFQNQQSHITWDPPQPNPNPSNLNNTLHHNIKPESPNFHTNLSSPPLPFLHHTNPKSIMTSSPFHVSTQQLSSTAAMSPHLSATALLQKAATVGATAITGSQHHTSQLSIGQFGSVTQLNSVDHYINNMRGCLTGKNEDGLTRDFLGLTNGGGNGGESLDVKDMLTFTGGVEYHQHQPHQNMMMLKSQSQQAGFGFLGTTTVPESWGNC*