AlfalfaGEDB | Msa0124240

M. sativa cultivar zhongmu-4 / Msa0124240

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124240	XP_024635863.1	95.516	446	14	2	1	440	1	446	0.0	880

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124240	sp\|O22759\|IDD12_ARATH	50.630	397	122	9	23	404	36	373	6.89e-120	358

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124240	A0A396K073	95.516	446	14	2	1	440	1	446	0.0	880

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TFs/TRs:

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Gene ID	Type	Classification
Msa0124240	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124240	MtrunA17_Chr1g0185121	95.516	446	14	2	1	440	1	446	0.0	880
Msa0124240	MtrunA17_Chr8g0342421	56.780	354	101	9	6	327	18	351	5.05e-116	349
Msa0124240	MtrunA17_Chr1g0191991	60.784	306	86	5	40	328	63	351	3.80e-115	347
Msa0124240	MtrunA17_Chr2g0330171	53.403	382	134	11	6	363	1	362	4.70e-114	342
Msa0124240	MtrunA17_Chr1g0181381	83.516	182	26	1	36	217	34	211	1.25e-113	342
Msa0124240	MtrunA17_Chr1g0151351	57.191	299	93	6	35	333	37	300	7.21e-113	339
Msa0124240	MtrunA17_Chr7g0263941	57.143	322	97	8	17	327	11	302	9.37e-111	332
Msa0124240	MtrunA17_Chr1g0162971	50.129	389	124	10	40	379	41	408	1.82e-110	332
Msa0124240	MtrunA17_Chr8g0373541	75.862	203	42	3	6	208	4	199	4.38e-109	332
Msa0124240	MtrunA17_Chr4g0040571	83.146	178	29	1	29	206	28	204	4.48e-109	331

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124240	AT4G02670.1	50.630	397	122	9	23	404	36	373	7.00e-121	358
Msa0124240	AT4G02670.2	50.630	397	122	9	23	404	38	375	8.61e-121	358
Msa0124240	AT3G50700.1	48.165	436	153	13	2	386	1	414	1.14e-113	341
Msa0124240	AT1G55110.3	73.059	219	51	4	6	216	21	239	7.12e-111	334
Msa0124240	AT1G55110.1	73.059	219	51	4	6	216	21	239	7.12e-111	334
Msa0124240	AT1G55110.2	73.059	219	51	4	6	216	21	239	7.12e-111	334
Msa0124240	AT5G03150.1	81.868	182	30	1	39	217	52	233	3.76e-108	329
Msa0124240	AT5G66730.1	70.089	224	54	4	2	221	1	215	4.79e-107	326
Msa0124240	AT3G45260.2	83.735	166	27	0	39	204	38	203	1.78e-106	323
Msa0124240	AT3G45260.1	83.735	166	27	0	39	204	38	203	1.78e-106	323

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Find 136 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACCATGGGTATATT+TGG	0.189707	1_3:+51914134	Msa0124240:three_prime_UTR
AAACAGTACTCCATGACAAA+AGG	0.510212	1_3:-51914178	None:intergenic
AAACATTATAGTAGAAAACA+TGG	0.647572	1_3:+51911066	Msa0124240:CDS
AAAGCTATCACTTCAGCATC+AGG	0.433390	1_3:-51910814	None:intergenic
AAAGCTCACTCTAAAACCTG+TGG	0.713942	1_3:+51911147	Msa0124240:CDS
AAAGTTGCTGTGTGCTGACG+TGG	0.575946	1_3:-51913689	None:intergenic
AAATATACCCATGGTAATTT+TGG	0.155636	1_3:-51914132	None:intergenic
AACAACTGTTCCTGAGTCGT+GGG	0.538679	1_3:+51914094	Msa0124240:CDS
AACAGCACTACAAGTTGGAG+AGG	0.629655	1_3:-51910302	None:intergenic
AACATGAGAGGCTGCCTCAC+CGG	0.528047	1_3:+51913879	Msa0124240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAAGAGAAAAAAGCT+AGG	-	chr1_3:51910274-51910293	None:intergenic	30.0%
TTTGTTGCTAATAGTGTCTT+TGG	-	chr1_3:51910844-51910863	None:intergenic	30.0%
GAAAACATGGTGAGAAAAAA+TGG	+	chr1_3:51911079-51911098	Msa0124240:CDS	30.0%
TTTATATTCTCTAGTACCAC+AGG	-	chr1_3:51911166-51911185	None:intergenic	30.0%
AGTACTATACCTGGAAAAAA+GGG	-	chr1_3:51911202-51911221	None:intergenic	30.0%
TAGTACTATACCTGGAAAAA+AGG	-	chr1_3:51911203-51911222	None:intergenic	30.0%
AACAATAAGGCAAATGCAAT+CGG	-	chr1_3:51911443-51911462	None:intergenic	30.0%
TTGCAGCACAATAAACAATA+AGG	-	chr1_3:51911456-51911475	None:intergenic	30.0%
AATTATGGTAAATACTCCGT+AGG	-	chr1_3:51911534-51911553	None:intergenic	30.0%
CCTTTCATGAAACAAATTCA+AGG	-	chr1_3:51911713-51911732	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	51910137	51914353	51910137	ID=Msa0124240;Name=Msa0124240
chr1_3	mRNA	51910137	51914353	51910137	ID=Msa0124240-mRNA-1;Parent=Msa0124240;Name=Msa0124240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=209\|1\|1\|1\|1\|1\|3\|226\|440
chr1_3	exon	51910137	51910493	51910137	ID=Msa0124240-mRNA-1:exon:15865;Parent=Msa0124240-mRNA-1
chr1_3	exon	51910812	51911211	51910812	ID=Msa0124240-mRNA-1:exon:15866;Parent=Msa0124240-mRNA-1
chr1_3	exon	51913353	51914353	51913353	ID=Msa0124240-mRNA-1:exon:15867;Parent=Msa0124240-mRNA-1
chr1_3	five_prime_UTR	51910137	51910345	51910137	ID=Msa0124240-mRNA-1:five_prime_utr;Parent=Msa0124240-mRNA-1
chr1_3	CDS	51910346	51910493	51910346	ID=Msa0124240-mRNA-1:cds;Parent=Msa0124240-mRNA-1
chr1_3	CDS	51910812	51911211	51910812	ID=Msa0124240-mRNA-1:cds;Parent=Msa0124240-mRNA-1
chr1_3	CDS	51913353	51914127	51913353	ID=Msa0124240-mRNA-1:cds;Parent=Msa0124240-mRNA-1
chr1_3	three_prime_UTR	51914128	51914353	51914128	ID=Msa0124240-mRNA-1:three_prime_utr;Parent=Msa0124240-mRNA-1

Gene Sequence

>Msa0124240

ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAGTGTCTCTTCTACTAGATTAAACCACTTAGTTTCAACCATAAATTCCTCACAACAGCCTCAAAAGTCCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCTGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCTGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCAACAAAGCCACATCACCTGGGACCCACCTCAACCAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCCTCCTCTACCATTTCTTCATCACACAAACCCTAAAAGCATAATGACATCATCACCCTTCCACGTCAGCACACAGCAACTTTCTTCCACTGCTGCCATGTCACCACACCTTTCAGCAACTGCACTTCTCCAGAAAGCAGCAACCGTCGGTGCCACCGCCATCACAGGCAGCCAACATCACACCTCTCAGCTCAGCATTGGCCAGTTTGGATCAGTGACTCAGCTCAACTCCGTTGATCACTACATTAACAACATGAGAGGCTGCCTCACCGGAAAGAACGAAGACGGTCTCACGAGGGACTTTCTTGGCCTTACCAACGGCGGAGGAAATGGTGGTGAGTCCTTGGATGTAAAGGATATGCTAACATTCACAGGGGGTGTAGAATACCACCAACACCAACCTCATCAAAACATGATGATGCTCAAGTCACAGTCACAACAAGCAGGTTTTGGTTTTCTTGGGACAACAACTGTTCCTGAGTCGTGGGGGAACTGTTAA

Protein sequence

>Msa0124240

MFPALMSNSTSFSEETSVSSTRLNHLVSTINSSQQPQKSKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQSFQNQQSHITWDPPQPNPNPSNLNNTLHHNIKPESPNFHTNLSSPPLPFLHHTNPKSIMTSSPFHVSTQQLSSTAAMSPHLSATALLQKAATVGATAITGSQHHTSQLSIGQFGSVTQLNSVDHYINNMRGCLTGKNEDGLTRDFLGLTNGGGNGGESLDVKDMLTFTGGVEYHQHQPHQNMMMLKSQSQQAGFGFLGTTTVPESWGNC*