Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125190 | AES61869.1 | 67.361 | 144 | 29 | 1 | 1 | 144 | 1 | 126 | 1.97e-57 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125190 | G7I2W4 | 67.361 | 144 | 29 | 1 | 1 | 144 | 1 | 126 | 9.42e-58 | 186 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0125190 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125190 | MtrunA17_Chr5g0399781 | 52.830 | 53 | 24 | 1 | 4 | 56 | 13 | 64 | 1.51e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTGTGGTTTACATTTCA+AGG | 0.339580 | 1_3:+53563085 | Msa0125190:CDS |
| ATTGGTGTCGGCGTCTCTAT+TGG | 0.349108 | 1_3:-53564072 | None:intergenic |
| ATTGGTGTCGTCATCTCTAT+TGG | 0.371711 | 1_3:-53564054 | None:intergenic |
| CCACAAGCGTTACACAATAT+TGG | 0.380139 | 1_3:-53563071 | None:intergenic |
| TTTCAACAGAAACTCAAGTT+TGG | 0.389578 | 1_3:+53563027 | Msa0125190:CDS |
| AATCTTTCAAACCAAACTTC+AGG | 0.411413 | 1_3:+53563200 | Msa0125190:CDS |
| CCAAGCAATGAGATAGGTCT+TGG | 0.425187 | 1_3:+53564201 | Msa0125190:CDS |
| CACAATATTGGCGTCTCGTA+TGG | 0.440494 | 1_3:-53563059 | None:intergenic |
| TCAAACAACAAAATATCGTC+AGG | 0.502407 | 1_3:-53564159 | None:intergenic |
| TCTTGGATGCATTCGTCTAA+AGG | 0.502885 | 1_3:+53564218 | Msa0125190:CDS |
| TTTATACCAAGCAATGAGAT+AGG | 0.511374 | 1_3:+53564195 | Msa0125190:CDS |
| CCAATATTGTGTAACGCTTG+TGG | 0.532300 | 1_3:+53563071 | Msa0125190:CDS |
| GAAACTCAAGTTTGGCGCAA+AGG | 0.544030 | 1_3:+53563035 | Msa0125190:CDS |
| CCAAGACCTATCTCATTGCT+TGG | 0.545705 | 1_3:-53564201 | None:intergenic |
| GGTTTACATTTCAAGGCGAA+AGG | 0.567422 | 1_3:+53563092 | Msa0125190:CDS |
| AATAGAGACGCCGACACCAA+TGG | 0.575440 | 1_3:+53564074 | Msa0125190:CDS |
| TCTTCGGGAGATAGTTAGCA+AGG | 0.579240 | 1_3:-53563118 | None:intergenic |
| GGAAACTCATCCATTGGTGT+CGG | 0.599667 | 1_3:-53564084 | None:intergenic |
| AGCCCTGCAAAATCAGTCAT+CGG | 0.602139 | 1_3:+53563142 | Msa0125190:CDS |
| GATACTTCTACAGATCAAGA+TGG | 0.615323 | 1_3:+53564246 | Msa0125190:CDS |
| CTTCGGGAGATAGTTAGCAA+GGG | 0.642252 | 1_3:-53563117 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGATGATATAAATTGAA+GGG | - | chr1_3:53563301-53563320 | None:intergenic | 15.0% |
| !! | AAATAGATGATATAAATTGA+AGG | - | chr1_3:53563302-53563321 | None:intergenic | 15.0% |
| !!! | ACATTGTAAGAATATTTTTA+AGG | + | chr1_3:53563487-53563506 | Msa0125190:intron | 15.0% |
| !!! | CATTGTAAGAATATTTTTAA+GGG | + | chr1_3:53563488-53563507 | Msa0125190:intron | 15.0% |
| !!! | ATTGTAAGAATATTTTTAAG+GGG | + | chr1_3:53563489-53563508 | Msa0125190:intron | 15.0% |
| !! | TTAAAATATGAAACTTCATT+TGG | - | chr1_3:53563676-53563695 | None:intergenic | 15.0% |
| !! | AATAGATGATATAAATTGAA+GGG | - | chr1_3:53563301-53563320 | None:intergenic | 15.0% |
| !! | AAATAGATGATATAAATTGA+AGG | - | chr1_3:53563302-53563321 | None:intergenic | 15.0% |
| !!! | ACATTGTAAGAATATTTTTA+AGG | + | chr1_3:53563487-53563506 | Msa0125190:intron | 15.0% |
| !!! | CATTGTAAGAATATTTTTAA+GGG | + | chr1_3:53563488-53563507 | Msa0125190:intron | 15.0% |
| !!! | ATTGTAAGAATATTTTTAAG+GGG | + | chr1_3:53563489-53563508 | Msa0125190:intron | 15.0% |
| !! | TTAAAATATGAAACTTCATT+TGG | - | chr1_3:53563676-53563695 | None:intergenic | 15.0% |
| !!! | AATTTTTATTACCTGAAGTT+TGG | - | chr1_3:53563214-53563233 | None:intergenic | 20.0% |
| !!! | AATTTTTATTACCTGAAGTT+TGG | - | chr1_3:53563214-53563233 | None:intergenic | 20.0% |
| !! | TTTACATTTGGTGAAATATG+GGG | - | chr1_3:53563260-53563279 | None:intergenic | 25.0% |
| !! | CTTTACATTTGGTGAAATAT+GGG | - | chr1_3:53563261-53563280 | None:intergenic | 25.0% |
| !! | AATAACTTGTGCTTTACATT+TGG | - | chr1_3:53563272-53563291 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGT+TGG | + | chr1_3:53563406-53563425 | Msa0125190:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGTT+GGG | + | chr1_3:53563407-53563426 | Msa0125190:intron | 25.0% |
| !! | ATGGGTATTGTTATAATTCA+GGG | + | chr1_3:53563520-53563539 | Msa0125190:intron | 25.0% |
| ! | ACAAATATCTCCATAAATGT+AGG | - | chr1_3:53563770-53563789 | None:intergenic | 25.0% |
| ! | GTGGGAAAAATACAAATTTA+TGG | + | chr1_3:53563965-53563984 | Msa0125190:intron | 25.0% |
| !! | TTTACATTTGGTGAAATATG+GGG | - | chr1_3:53563260-53563279 | None:intergenic | 25.0% |
| !! | CTTTACATTTGGTGAAATAT+GGG | - | chr1_3:53563261-53563280 | None:intergenic | 25.0% |
| !! | AATAACTTGTGCTTTACATT+TGG | - | chr1_3:53563272-53563291 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGT+TGG | + | chr1_3:53563406-53563425 | Msa0125190:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGTT+GGG | + | chr1_3:53563407-53563426 | Msa0125190:intron | 25.0% |
| !! | ATGGGTATTGTTATAATTCA+GGG | + | chr1_3:53563520-53563539 | Msa0125190:intron | 25.0% |
| ! | ACAAATATCTCCATAAATGT+AGG | - | chr1_3:53563770-53563789 | None:intergenic | 25.0% |
| ! | GTGGGAAAAATACAAATTTA+TGG | + | chr1_3:53563965-53563984 | Msa0125190:intron | 25.0% |
| TTTCAACAGAAACTCAAGTT+TGG | + | chr1_3:53563027-53563046 | Msa0125190:CDS | 30.0% | |
| !!! | CAGATGTTTTTTCAATGTCA+AGG | - | chr1_3:53563169-53563188 | None:intergenic | 30.0% |
| AATCTTTCAAACCAAACTTC+AGG | + | chr1_3:53563200-53563219 | Msa0125190:CDS | 30.0% | |
| ! | GCTTTACATTTGGTGAAATA+TGG | - | chr1_3:53563262-53563281 | None:intergenic | 30.0% |
| !! | ATTTTTCCTTTTCTAGTGCA+TGG | + | chr1_3:53563318-53563337 | Msa0125190:intron | 30.0% |
| !! | TTTTTCCTTTTCTAGTGCAT+GGG | + | chr1_3:53563319-53563338 | Msa0125190:intron | 30.0% |
| ACTCATAAGTAGTGTAGAAT+GGG | + | chr1_3:53563434-53563453 | Msa0125190:intron | 30.0% | |
| !! | TTTTTAAGGGGTACAATTCA+TGG | + | chr1_3:53563501-53563520 | Msa0125190:intron | 30.0% |
| !! | TTTTAAGGGGTACAATTCAT+GGG | + | chr1_3:53563502-53563521 | Msa0125190:intron | 30.0% |
| ! | CATGGGTATTGTTATAATTC+AGG | + | chr1_3:53563519-53563538 | Msa0125190:intron | 30.0% |
| ! | TGGGTATTGTTATAATTCAG+GGG | + | chr1_3:53563521-53563540 | Msa0125190:intron | 30.0% |
| !! | ATTTTAAGTAGACACAGCAT+TGG | + | chr1_3:53563689-53563708 | Msa0125190:intron | 30.0% |
| ACTCTATATGCCTACATTTA+TGG | + | chr1_3:53563757-53563776 | Msa0125190:intron | 30.0% | |
| AATGACAACTAAAGAAGAGT+TGG | + | chr1_3:53563798-53563817 | Msa0125190:intron | 30.0% | |
| CTAGCTAATGTGTAACTATA+AGG | - | chr1_3:53563849-53563868 | None:intergenic | 30.0% | |
| CACATTAGCTAGTATTCTTA+TGG | + | chr1_3:53563857-53563876 | Msa0125190:intron | 30.0% | |
| !!! | CATTAGTACCTTATTTTCTC+AGG | + | chr1_3:53563943-53563962 | Msa0125190:intron | 30.0% |
| !!! | ACAAATGAACGCTTTTTTTG+AGG | - | chr1_3:53564003-53564022 | None:intergenic | 30.0% |
| TCAAACAACAAAATATCGTC+AGG | - | chr1_3:53564162-53564181 | None:intergenic | 30.0% | |
| TTTATACCAAGCAATGAGAT+AGG | + | chr1_3:53564195-53564214 | Msa0125190:CDS | 30.0% | |
| TTTCAACAGAAACTCAAGTT+TGG | + | chr1_3:53563027-53563046 | Msa0125190:CDS | 30.0% | |
| !!! | CAGATGTTTTTTCAATGTCA+AGG | - | chr1_3:53563169-53563188 | None:intergenic | 30.0% |
| AATCTTTCAAACCAAACTTC+AGG | + | chr1_3:53563200-53563219 | Msa0125190:CDS | 30.0% | |
| ! | GCTTTACATTTGGTGAAATA+TGG | - | chr1_3:53563262-53563281 | None:intergenic | 30.0% |
| !! | ATTTTTCCTTTTCTAGTGCA+TGG | + | chr1_3:53563318-53563337 | Msa0125190:intron | 30.0% |
| !! | TTTTTCCTTTTCTAGTGCAT+GGG | + | chr1_3:53563319-53563338 | Msa0125190:intron | 30.0% |
| ACTCATAAGTAGTGTAGAAT+GGG | + | chr1_3:53563434-53563453 | Msa0125190:intron | 30.0% | |
| !! | TTTTTAAGGGGTACAATTCA+TGG | + | chr1_3:53563501-53563520 | Msa0125190:intron | 30.0% |
| !! | TTTTAAGGGGTACAATTCAT+GGG | + | chr1_3:53563502-53563521 | Msa0125190:intron | 30.0% |
| ! | CATGGGTATTGTTATAATTC+AGG | + | chr1_3:53563519-53563538 | Msa0125190:intron | 30.0% |
| ! | TGGGTATTGTTATAATTCAG+GGG | + | chr1_3:53563521-53563540 | Msa0125190:intron | 30.0% |
| !! | ATTTTAAGTAGACACAGCAT+TGG | + | chr1_3:53563689-53563708 | Msa0125190:intron | 30.0% |
| ACTCTATATGCCTACATTTA+TGG | + | chr1_3:53563757-53563776 | Msa0125190:intron | 30.0% | |
| AATGACAACTAAAGAAGAGT+TGG | + | chr1_3:53563798-53563817 | Msa0125190:intron | 30.0% | |
| CTAGCTAATGTGTAACTATA+AGG | - | chr1_3:53563849-53563868 | None:intergenic | 30.0% | |
| CACATTAGCTAGTATTCTTA+TGG | + | chr1_3:53563857-53563876 | Msa0125190:intron | 30.0% | |
| !!! | CATTAGTACCTTATTTTCTC+AGG | + | chr1_3:53563943-53563962 | Msa0125190:intron | 30.0% |
| !!! | ACAAATGAACGCTTTTTTTG+AGG | - | chr1_3:53564003-53564022 | None:intergenic | 30.0% |
| TCAAACAACAAAATATCGTC+AGG | - | chr1_3:53564162-53564181 | None:intergenic | 30.0% | |
| TTTATACCAAGCAATGAGAT+AGG | + | chr1_3:53564195-53564214 | Msa0125190:CDS | 30.0% | |
| TAAAACCCATGCACTAGAAA+AGG | - | chr1_3:53563327-53563346 | None:intergenic | 35.0% | |
| GACTCATAAGTAGTGTAGAA+TGG | + | chr1_3:53563433-53563452 | Msa0125190:intron | 35.0% | |
| ! | TCGTTGCAATGTGGATTAAA+GGG | + | chr1_3:53563639-53563658 | Msa0125190:intron | 35.0% |
| !!! | TAGTACCTTATTTTCTCAGG+TGG | + | chr1_3:53563946-53563965 | Msa0125190:intron | 35.0% |
| !!! | AGTACCTTATTTTCTCAGGT+GGG | + | chr1_3:53563947-53563966 | Msa0125190:intron | 35.0% |
| ! | TTTTCCCACCTGAGAAAATA+AGG | - | chr1_3:53563954-53563973 | None:intergenic | 35.0% |
| !! | AAAAGCGTTCATTTGTAGAG+AGG | + | chr1_3:53564007-53564026 | Msa0125190:intron | 35.0% |
| ! | TTTTGTGGAAACTCATCCAT+TGG | - | chr1_3:53564093-53564112 | None:intergenic | 35.0% |
| ! | TATAGACTGAGAAGCTTTTG+TGG | - | chr1_3:53564108-53564127 | None:intergenic | 35.0% |
| GATACTTCTACAGATCAAGA+TGG | + | chr1_3:53564246-53564265 | Msa0125190:CDS | 35.0% | |
| TAAAACCCATGCACTAGAAA+AGG | - | chr1_3:53563327-53563346 | None:intergenic | 35.0% | |
| GACTCATAAGTAGTGTAGAA+TGG | + | chr1_3:53563433-53563452 | Msa0125190:intron | 35.0% | |
| ! | TCGTTGCAATGTGGATTAAA+GGG | + | chr1_3:53563639-53563658 | Msa0125190:intron | 35.0% |
| !!! | TAGTACCTTATTTTCTCAGG+TGG | + | chr1_3:53563946-53563965 | Msa0125190:intron | 35.0% |
| !!! | AGTACCTTATTTTCTCAGGT+GGG | + | chr1_3:53563947-53563966 | Msa0125190:intron | 35.0% |
| ! | TTTTCCCACCTGAGAAAATA+AGG | - | chr1_3:53563954-53563973 | None:intergenic | 35.0% |
| !! | AAAAGCGTTCATTTGTAGAG+AGG | + | chr1_3:53564007-53564026 | Msa0125190:intron | 35.0% |
| ! | TTTTGTGGAAACTCATCCAT+TGG | - | chr1_3:53564093-53564112 | None:intergenic | 35.0% |
| ! | TATAGACTGAGAAGCTTTTG+TGG | - | chr1_3:53564108-53564127 | None:intergenic | 35.0% |
| GATACTTCTACAGATCAAGA+TGG | + | chr1_3:53564246-53564265 | Msa0125190:CDS | 35.0% | |
| CCACAAGCGTTACACAATAT+TGG | - | chr1_3:53563074-53563093 | None:intergenic | 40.0% | |
| CCAATATTGTGTAACGCTTG+TGG | + | chr1_3:53563071-53563090 | Msa0125190:CDS | 40.0% | |
| CGCTTGTGGTTTACATTTCA+AGG | + | chr1_3:53563085-53563104 | Msa0125190:CDS | 40.0% | |
| GGTTTACATTTCAAGGCGAA+AGG | + | chr1_3:53563092-53563111 | Msa0125190:CDS | 40.0% | |
| !! | GTGCATGGGTTTTAATGTAG+CGG | + | chr1_3:53563333-53563352 | Msa0125190:intron | 40.0% |
| ATAAGTAGTGTAGAATGGGC+AGG | + | chr1_3:53563438-53563457 | Msa0125190:intron | 40.0% | |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | - | chr1_3:53563566-53563585 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | - | chr1_3:53563567-53563586 | None:intergenic | 40.0% |
| ! | GTCGTTGCAATGTGGATTAA+AGG | + | chr1_3:53563638-53563657 | Msa0125190:intron | 40.0% |
| !! | TGTGGATTAAAGGGTGTTTG+AGG | + | chr1_3:53563648-53563667 | Msa0125190:intron | 40.0% |
| !! | GTGGATTAAAGGGTGTTTGA+GGG | + | chr1_3:53563649-53563668 | Msa0125190:intron | 40.0% |
| !! | ATTGGTGTCGTCATCTCTAT+TGG | - | chr1_3:53564057-53564076 | None:intergenic | 40.0% |
| TCTTGGATGCATTCGTCTAA+AGG | + | chr1_3:53564218-53564237 | Msa0125190:CDS | 40.0% | |
| CCACAAGCGTTACACAATAT+TGG | - | chr1_3:53563074-53563093 | None:intergenic | 40.0% | |
| CCAATATTGTGTAACGCTTG+TGG | + | chr1_3:53563071-53563090 | Msa0125190:CDS | 40.0% | |
| CGCTTGTGGTTTACATTTCA+AGG | + | chr1_3:53563085-53563104 | Msa0125190:CDS | 40.0% | |
| GGTTTACATTTCAAGGCGAA+AGG | + | chr1_3:53563092-53563111 | Msa0125190:CDS | 40.0% | |
| !! | GTGCATGGGTTTTAATGTAG+CGG | + | chr1_3:53563333-53563352 | Msa0125190:intron | 40.0% |
| ATAAGTAGTGTAGAATGGGC+AGG | + | chr1_3:53563438-53563457 | Msa0125190:intron | 40.0% | |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | - | chr1_3:53563566-53563585 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | - | chr1_3:53563567-53563586 | None:intergenic | 40.0% |
| ! | GTCGTTGCAATGTGGATTAA+AGG | + | chr1_3:53563638-53563657 | Msa0125190:intron | 40.0% |
| !! | TGTGGATTAAAGGGTGTTTG+AGG | + | chr1_3:53563648-53563667 | Msa0125190:intron | 40.0% |
| !! | GTGGATTAAAGGGTGTTTGA+GGG | + | chr1_3:53563649-53563668 | Msa0125190:intron | 40.0% |
| !! | ATTGGTGTCGTCATCTCTAT+TGG | - | chr1_3:53564057-53564076 | None:intergenic | 40.0% |
| TCTTGGATGCATTCGTCTAA+AGG | + | chr1_3:53564218-53564237 | Msa0125190:CDS | 40.0% | |
| GAAACTCAAGTTTGGCGCAA+AGG | + | chr1_3:53563035-53563054 | Msa0125190:CDS | 45.0% | |
| CACAATATTGGCGTCTCGTA+TGG | - | chr1_3:53563062-53563081 | None:intergenic | 45.0% | |
| CTTCGGGAGATAGTTAGCAA+GGG | - | chr1_3:53563120-53563139 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTTAGCA+AGG | - | chr1_3:53563121-53563140 | None:intergenic | 45.0% | |
| ! | TGATTTTGCAGGGCTCTCTT+CGG | - | chr1_3:53563137-53563156 | None:intergenic | 45.0% |
| AGCCCTGCAAAATCAGTCAT+CGG | + | chr1_3:53563142-53563161 | Msa0125190:CDS | 45.0% | |
| !! | GTCCGATGACTGATTTTGCA+GGG | - | chr1_3:53563147-53563166 | None:intergenic | 45.0% |
| ! | CGCTGCTAAAGTTTTCTACG+GGG | - | chr1_3:53563565-53563584 | None:intergenic | 45.0% |
| TGAGAGTTGTCGTTGCAATG+TGG | + | chr1_3:53563630-53563649 | Msa0125190:intron | 45.0% | |
| GGAAACTCATCCATTGGTGT+CGG | - | chr1_3:53564087-53564106 | None:intergenic | 45.0% | |
| CCAAGACCTATCTCATTGCT+TGG | - | chr1_3:53564204-53564223 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGTCT+TGG | + | chr1_3:53564201-53564220 | Msa0125190:CDS | 45.0% | |
| GAAACTCAAGTTTGGCGCAA+AGG | + | chr1_3:53563035-53563054 | Msa0125190:CDS | 45.0% | |
| CACAATATTGGCGTCTCGTA+TGG | - | chr1_3:53563062-53563081 | None:intergenic | 45.0% | |
| CTTCGGGAGATAGTTAGCAA+GGG | - | chr1_3:53563120-53563139 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTTAGCA+AGG | - | chr1_3:53563121-53563140 | None:intergenic | 45.0% | |
| ! | TGATTTTGCAGGGCTCTCTT+CGG | - | chr1_3:53563137-53563156 | None:intergenic | 45.0% |
| AGCCCTGCAAAATCAGTCAT+CGG | + | chr1_3:53563142-53563161 | Msa0125190:CDS | 45.0% | |
| !! | GTCCGATGACTGATTTTGCA+GGG | - | chr1_3:53563147-53563166 | None:intergenic | 45.0% |
| ! | CGCTGCTAAAGTTTTCTACG+GGG | - | chr1_3:53563565-53563584 | None:intergenic | 45.0% |
| TGAGAGTTGTCGTTGCAATG+TGG | + | chr1_3:53563630-53563649 | Msa0125190:intron | 45.0% | |
| GGAAACTCATCCATTGGTGT+CGG | - | chr1_3:53564087-53564106 | None:intergenic | 45.0% | |
| CCAAGACCTATCTCATTGCT+TGG | - | chr1_3:53564204-53564223 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGTCT+TGG | + | chr1_3:53564201-53564220 | Msa0125190:CDS | 45.0% | |
| ! | GATTTTGCAGGGCTCTCTTC+GGG | - | chr1_3:53563136-53563155 | None:intergenic | 50.0% |
| !! | GGTCCGATGACTGATTTTGC+AGG | - | chr1_3:53563148-53563167 | None:intergenic | 50.0% |
| !! | ATTGGTGTCGGCGTCTCTAT+TGG | - | chr1_3:53564075-53564094 | None:intergenic | 50.0% |
| AATAGAGACGCCGACACCAA+TGG | + | chr1_3:53564074-53564093 | Msa0125190:CDS | 50.0% | |
| ! | GATTTTGCAGGGCTCTCTTC+GGG | - | chr1_3:53563136-53563155 | None:intergenic | 50.0% |
| !! | GGTCCGATGACTGATTTTGC+AGG | - | chr1_3:53563148-53563167 | None:intergenic | 50.0% |
| !! | ATTGGTGTCGGCGTCTCTAT+TGG | - | chr1_3:53564075-53564094 | None:intergenic | 50.0% |
| AATAGAGACGCCGACACCAA+TGG | + | chr1_3:53564074-53564093 | Msa0125190:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53563023 | 53564272 | 53563023 | ID=Msa0125190;Name=Msa0125190 |
| chr1_3 | mRNA | 53563023 | 53564272 | 53563023 | ID=Msa0125190-mRNA-1;Parent=Msa0125190;Name=Msa0125190-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0|0.5|2|0|148 |
| chr1_3 | exon | 53563023 | 53563221 | 53563023 | ID=Msa0125190-mRNA-1:exon:16382;Parent=Msa0125190-mRNA-1 |
| chr1_3 | exon | 53564025 | 53564272 | 53564025 | ID=Msa0125190-mRNA-1:exon:16383;Parent=Msa0125190-mRNA-1 |
| chr1_3 | CDS | 53563023 | 53563221 | 53563023 | ID=Msa0125190-mRNA-1:cds;Parent=Msa0125190-mRNA-1 |
| chr1_3 | CDS | 53564025 | 53564272 | 53564025 | ID=Msa0125190-mRNA-1:cds;Parent=Msa0125190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
