AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126120 MtrunA17_Chr5g0418191 57.616 151 54 1 4 144 262 412 4.35e-55 178
Msa0126120 MtrunA17_Chr5g0418191 55.000 60 26 1 62 121 151 209 2.82e-16 74.3
Msa0126120 MtrunA17_Chr1g0188941 77.083 96 22 0 29 124 18 113 6.13e-49 153
Msa0126120 MtrunA17_Chr1g0188971 87.805 82 10 0 1 82 1 82 2.81e-48 150
Msa0126120 MtrunA17_Chr4g0042831 55.814 129 53 2 4 132 224 348 2.66e-44 149
Msa0126120 MtrunA17_Chr4g0042831 46.914 81 42 1 42 121 124 204 7.14e-16 73.2
Msa0126120 MtrunA17_Chr7g0218081 52.593 135 63 1 4 138 353 486 2.94e-42 146
Msa0126120 MtrunA17_Chr7g0218081 56.452 62 22 2 62 121 228 286 2.17e-15 72.0
Msa0126120 MtrunA17_Chr1g0188961 86.957 69 5 1 82 150 3 67 2.53e-37 122
Msa0126120 MtrunA17_Chr3g0101131 54.167 120 47 2 12 131 373 484 1.68e-36 131
Msa0126120 MtrunA17_Chr3g0101131 45.205 73 39 1 49 121 230 301 2.66e-14 68.9
Msa0126120 MtrunA17_Chr3g0079691 52.846 123 47 1 11 133 455 566 2.29e-36 132
Msa0126120 MtrunA17_Chr3g0079691 51.667 60 28 1 62 121 280 338 3.45e-13 65.9
Msa0126120 MtrunA17_Chr5g0445311 65.882 85 29 0 47 131 349 433 3.15e-35 127
Msa0126120 MtrunA17_Chr5g0445311 50.000 60 29 1 62 121 200 258 3.85e-13 65.5
Msa0126120 MtrunA17_Chr7g0243891 57.426 101 43 0 23 123 335 435 2.80e-34 125
Msa0126120 MtrunA17_Chr7g0243891 56.452 62 26 1 62 123 216 276 3.72e-17 77.0
Msa0126120 MtrunA17_Chr4g0004911 68.354 79 25 0 43 121 317 395 2.94e-34 124
Msa0126120 MtrunA17_Chr4g0004911 53.333 60 28 0 62 121 184 243 1.88e-16 75.1
Msa0126120 MtrunA17_Chr3g0106491 64.706 85 30 0 38 122 341 425 3.72e-33 122
Msa0126120 MtrunA17_Chr3g0106491 46.154 78 37 2 46 123 186 258 1.96e-17 77.8
Msa0126120 MtrunA17_Chr5g0432161 54.400 125 49 4 10 130 370 490 5.28e-33 122
Msa0126120 MtrunA17_Chr5g0432161 55.000 60 26 1 62 121 244 302 2.00e-16 75.1
Msa0126120 MtrunA17_Chr7g0249311 57.609 92 39 0 43 134 373 464 2.11e-31 117
Msa0126120 MtrunA17_Chr7g0249311 51.613 62 29 1 62 123 179 239 4.84e-14 68.2
Msa0126120 MtrunA17_Chr7g0249301 60.494 81 32 0 43 123 273 353 5.80e-30 111
Msa0126120 MtrunA17_Chr7g0249301 43.678 87 45 3 38 123 39 122 2.16e-14 68.9
Msa0126120 MtrunA17_Chr4g0051881 51.546 97 43 1 48 140 164 260 3.34e-29 108
Msa0126120 MtrunA17_Chr1g0194481 53.947 76 35 0 47 122 143 218 3.47e-27 103
Msa0126120 MtrunA17_Chr5g0443131 53.247 77 36 0 48 124 143 219 1.45e-26 101
Msa0126120 MtrunA17_Chr3g0129361 52.941 85 40 0 47 131 129 213 1.18e-25 97.1
Msa0126120 MtrunA17_Chr7g0263531 48.837 86 44 0 36 121 335 420 7.55e-25 98.6
Msa0126120 MtrunA17_Chr7g0263531 44.318 88 47 2 63 149 190 276 3.89e-16 73.9
Msa0126120 MtrunA17_Chr7g0270191 50.633 79 39 0 43 121 126 204 1.10e-24 96.3
Msa0126120 MtrunA17_Chr2g0294231 51.948 77 37 0 47 123 188 264 2.30e-24 96.7
Msa0126120 MtrunA17_Chr8g0383351 50.562 89 43 1 47 134 144 232 6.70e-24 92.8
Msa0126120 MtrunA17_Chr8g0335811 56.579 76 33 0 43 118 135 210 6.82e-24 92.8
Msa0126120 MtrunA17_Chr5g0418781 46.939 98 39 2 47 140 109 197 9.51e-24 93.6
Msa0126120 MtrunA17_Chr1g0150801 49.351 77 39 0 42 118 82 158 8.26e-23 88.2
Msa0126120 MtrunA17_Chr5g0447701 49.351 77 39 0 46 122 236 312 4.40e-22 90.5
Msa0126120 MtrunA17_Chr8g0383251 46.835 79 42 0 43 121 89 167 6.36e-22 86.7
Msa0126120 MtrunA17_Chr3g0129321 38.793 116 64 2 6 121 69 177 3.80e-21 85.1
Msa0126120 MtrunA17_Chr4g0074001 42.453 106 58 3 17 121 315 418 5.88e-21 87.8
Msa0126120 MtrunA17_Chr7g0270831 48.235 85 42 2 49 131 203 287 6.76e-21 87.4
Msa0126120 MtrunA17_Chr7g0224801 48.101 79 40 1 54 131 85 163 8.87e-21 83.2
Msa0126120 MtrunA17_Chr4g0068541 47.368 76 40 0 49 124 195 270 3.25e-20 85.5
Msa0126120 MtrunA17_Chr4g0051181 39.316 117 62 4 7 121 194 303 5.18e-20 85.1
Msa0126120 MtrunA17_Chr8g0386241 50.000 70 35 0 54 123 95 164 1.32e-19 80.5
Msa0126120 MtrunA17_Chr2g0333851 50.000 64 31 1 60 122 167 230 5.22e-19 81.3
Msa0126120 MtrunA17_Chr7g0216891 37.778 135 77 5 1 131 159 290 5.37e-19 82.4
Msa0126120 MtrunA17_Chr4g0060271 54.839 62 27 1 61 121 254 315 5.37e-19 82.4
Msa0126120 MtrunA17_Chr1g0147881 49.351 77 38 1 49 124 249 325 1.27e-18 80.5
Msa0126120 MtrunA17_Chr2g0302391 45.946 74 39 1 49 121 198 271 1.83e-18 80.9
Msa0126120 MtrunA17_Chr5g0401821 46.835 79 41 1 49 126 186 264 1.95e-18 79.3
Msa0126120 MtrunA17_Chr3g0136961 52.542 59 27 1 61 118 137 195 2.86e-18 79.0
Msa0126120 MtrunA17_Chr1g0189391 50.602 83 35 2 42 118 72 154 3.39e-18 79.3
Msa0126120 MtrunA17_Chr5g0432071 54.839 62 27 1 62 123 104 164 6.58e-18 76.6
Msa0126120 MtrunA17_Chr7g0238921 57.627 59 25 0 60 118 122 180 6.71e-18 78.2
Msa0126120 MtrunA17_Chr3g0099641 34.559 136 84 4 2 135 194 326 7.53e-18 79.0
Msa0126120 MtrunA17_Chr4g0025061 43.210 81 45 1 44 123 342 422 2.24e-17 77.8
Msa0126120 MtrunA17_Chr5g0447711 37.349 83 52 0 46 128 214 296 2.74e-17 76.6
Msa0126120 MtrunA17_Chr2g0288871 45.946 74 39 1 49 121 292 365 2.99e-17 77.4
Msa0126120 MtrunA17_Chr4g0053281 45.570 79 42 1 49 126 253 331 3.11e-17 76.6
Msa0126120 MtrunA17_Chr6g0485431 51.562 64 30 1 59 121 151 214 5.95e-17 76.3
Msa0126120 MtrunA17_Chr4g0075201 44.737 76 41 1 49 123 254 329 6.21e-17 76.6
Msa0126120 MtrunA17_Chr1g0150281 49.123 57 28 1 63 118 141 197 7.91e-17 75.1
Msa0126120 MtrunA17_Chr2g0322391 44.737 76 41 1 49 123 336 411 9.59e-17 75.9
Msa0126120 MtrunA17_Chr1g0184691 45.679 81 42 2 49 127 280 360 1.04e-16 75.5
Msa0126120 MtrunA17_Chr4g0001361 47.619 63 32 1 60 121 160 222 1.20e-16 75.1
Msa0126120 MtrunA17_Chr7g0248721 45.000 80 43 1 39 118 118 196 1.46e-16 73.2
Msa0126120 MtrunA17_Chr7g0270051 43.243 74 41 1 60 132 51 124 1.81e-16 73.9
Msa0126120 MtrunA17_Chr4g0025051 34.507 142 83 4 12 147 285 422 3.73e-16 74.3
Msa0126120 MtrunA17_Chr2g0319961 37.398 123 56 4 17 132 41 149 4.10e-16 72.8
Msa0126120 MtrunA17_Chr4g0071521 46.479 71 37 1 49 118 232 302 8.65e-16 72.4
Msa0126120 MtrunA17_Chr8g0379461 48.485 66 33 1 63 127 77 142 2.55e-15 70.5
Msa0126120 MtrunA17_Chr8g0387501 44.872 78 39 2 61 134 128 205 2.81e-15 70.9
Msa0126120 MtrunA17_Chr1g0150271 42.857 63 35 1 60 121 99 161 2.89e-15 70.5
Msa0126120 MtrunA17_Chr2g0293481 50.820 61 29 1 63 122 268 328 6.26e-15 70.9
Msa0126120 MtrunA17_Chr8g0348311 48.611 72 33 2 60 127 153 224 2.15e-14 68.9
Msa0126120 MtrunA17_Chr3g0139021 44.595 74 40 1 47 119 299 372 2.68e-14 68.9
Msa0126120 MtrunA17_Chr2g0284321 44.595 74 40 1 63 135 36 109 2.78e-14 67.4
Msa0126120 MtrunA17_Chr7g0248691 48.611 72 33 2 60 127 152 223 3.43e-14 68.2
Msa0126120 MtrunA17_Chr2g0289181 47.826 69 35 1 59 126 11 79 5.73e-14 66.6
Msa0126120 MtrunA17_Chr7g0228941 43.056 72 40 1 49 119 39 110 6.07e-14 64.3
Msa0126120 MtrunA17_Chr1g0202461 46.154 65 34 1 59 122 258 322 4.95e-13 65.1
Msa0126120 MtrunA17_Chr3g0126391 50.847 59 26 1 61 116 132 190 5.95e-13 64.7
Msa0126120 MtrunA17_Chr4g0024391 30.894 123 82 2 12 133 179 299 8.29e-12 61.6
Msa0126120 MtrunA17_Chr8g0387981 48.276 58 27 1 62 116 132 189 8.36e-12 61.6
Msa0126120 MtrunA17_Chr7g0275531 47.458 59 28 1 61 116 117 175 3.78e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126120 AT2G03340.1 57.692 130 54 1 2 130 354 483 2.98e-44 152
Msa0126120 AT2G03340.1 50.746 67 32 1 62 128 250 315 6.86e-16 73.9
Msa0126120 AT1G13960.2 59.016 122 48 2 2 121 194 315 1.39e-43 147
Msa0126120 AT1G13960.2 56.667 60 25 1 62 121 76 134 2.27e-17 77.8
Msa0126120 AT1G13960.1 59.016 122 48 2 2 121 347 468 9.43e-43 148
Msa0126120 AT1G13960.1 56.667 60 25 1 62 121 229 287 1.58e-17 78.6
Msa0126120 AT5G56270.1 62.245 98 36 1 26 123 452 548 1.69e-36 132
Msa0126120 AT5G56270.1 53.333 60 27 1 62 121 273 331 2.32e-14 69.7
Msa0126120 AT4G26640.5 58.491 106 42 1 22 127 167 270 1.28e-35 127
Msa0126120 AT4G26640.5 51.613 62 29 1 60 121 33 93 5.74e-14 68.2
Msa0126120 AT4G26640.6 58.491 106 42 1 22 127 167 270 1.28e-35 127
Msa0126120 AT4G26640.6 51.613 62 29 1 60 121 33 93 5.74e-14 68.2
Msa0126120 AT4G26640.4 58.491 106 42 1 22 127 167 270 1.28e-35 127
Msa0126120 AT4G26640.4 51.613 62 29 1 60 121 33 93 5.74e-14 68.2
Msa0126120 AT4G26640.3 58.491 106 42 1 22 127 167 270 1.28e-35 127
Msa0126120 AT4G26640.3 51.613 62 29 1 60 121 33 93 5.74e-14 68.2
Msa0126120 AT5G07100.2 69.737 76 23 0 47 122 126 201 2.23e-35 122
Msa0126120 AT5G07100.2 48.571 70 36 0 62 131 24 93 9.42e-18 76.6
Msa0126120 AT5G07100.4 69.737 76 23 0 47 122 126 201 2.23e-35 122
Msa0126120 AT5G07100.4 48.571 70 36 0 62 131 24 93 9.42e-18 76.6
Msa0126120 AT5G07100.5 69.737 76 23 0 47 122 126 201 2.23e-35 122
Msa0126120 AT5G07100.5 48.571 70 36 0 62 131 24 93 9.42e-18 76.6
Msa0126120 AT5G07100.3 69.737 76 23 0 47 122 126 201 2.23e-35 122
Msa0126120 AT5G07100.3 48.571 70 36 0 62 131 24 93 9.42e-18 76.6
Msa0126120 AT4G26640.1 58.491 106 42 1 22 127 271 374 4.13e-35 127
Msa0126120 AT4G26640.1 51.613 62 29 1 60 121 137 197 4.88e-14 68.6
Msa0126120 AT4G26440.1 53.043 115 53 1 14 128 325 438 5.29e-35 127
Msa0126120 AT4G26440.1 51.667 60 28 1 62 121 178 236 3.85e-14 68.9
Msa0126120 AT4G26640.7 58.491 106 42 1 22 127 303 406 5.61e-35 127
Msa0126120 AT4G26640.7 51.613 62 29 1 60 121 169 229 4.45e-14 68.6
Msa0126120 AT4G26640.2 58.491 106 42 1 22 127 343 446 6.64e-35 127
Msa0126120 AT4G26640.2 51.613 62 29 1 60 121 209 269 4.11e-14 68.9
Msa0126120 AT5G07100.1 69.737 76 23 0 47 122 219 294 1.24e-34 122
Msa0126120 AT5G07100.1 48.571 70 36 0 62 131 117 186 1.81e-17 77.4
Msa0126120 AT3G01080.1 58.696 92 38 0 30 121 274 365 1.88e-34 124
Msa0126120 AT3G01080.1 51.667 60 28 1 62 121 167 225 5.90e-13 65.5
Msa0126120 AT3G01080.2 58.696 92 38 0 30 121 312 403 2.50e-34 124
Msa0126120 AT3G01080.2 51.667 60 28 1 62 121 205 263 5.06e-13 65.5
Msa0126120 AT2G38470.1 48.507 134 60 1 6 130 297 430 2.76e-34 125
Msa0126120 AT2G38470.1 53.333 60 27 1 62 121 184 242 7.51e-16 73.9
Msa0126120 AT2G30250.1 59.259 81 33 0 47 127 313 393 1.72e-30 113
Msa0126120 AT2G30250.1 50.000 60 29 1 62 121 166 224 2.14e-11 60.8
Msa0126120 AT4G18170.1 42.735 117 53 2 8 124 132 234 2.47e-29 109
Msa0126120 AT1G29860.1 53.846 78 36 0 47 124 121 198 1.79e-27 103
Msa0126120 AT5G46350.1 53.333 75 35 0 48 122 169 243 1.46e-26 102
Msa0126120 AT3G01970.1 48.913 92 47 0 49 140 52 143 7.80e-26 95.9
Msa0126120 AT2G47260.1 50.649 77 38 0 47 123 159 235 3.15e-25 98.6
Msa0126120 AT2G04880.2 40.800 125 70 2 4 128 229 349 5.39e-25 99.4
Msa0126120 AT2G04880.2 38.938 113 59 3 13 125 71 173 7.22e-17 76.6
Msa0126120 AT2G04880.1 40.800 125 70 2 4 128 253 373 6.02e-25 99.4
Msa0126120 AT2G04880.1 38.053 113 60 2 13 125 71 173 8.49e-17 76.6
Msa0126120 AT5G49520.1 54.545 77 35 0 47 123 206 282 1.02e-24 98.2
Msa0126120 AT5G13080.1 45.652 92 50 0 49 140 54 145 2.07e-24 92.4
Msa0126120 AT5G26170.1 54.286 70 32 0 49 118 100 169 3.85e-24 92.4
Msa0126120 AT2G44745.1 56.579 76 33 0 43 118 126 201 4.34e-24 93.6
Msa0126120 AT4G39410.1 51.648 91 39 1 43 128 204 294 4.57e-24 95.1
Msa0126120 AT5G41570.1 44.554 101 56 0 43 143 79 179 1.36e-23 91.3
Msa0126120 AT3G62340.1 52.703 74 35 0 48 121 104 177 2.07e-23 92.8
Msa0126120 AT1G69310.4 52.703 74 35 0 47 120 132 205 1.31e-22 90.9
Msa0126120 AT1G69310.2 52.703 74 35 0 47 120 132 205 1.31e-22 90.9
Msa0126120 AT1G69310.1 52.703 74 35 0 47 120 132 205 1.31e-22 90.9
Msa0126120 AT5G64810.1 54.930 71 32 0 49 119 97 167 1.32e-22 89.0
Msa0126120 AT1G64000.1 51.250 80 39 0 39 118 91 170 1.80e-22 88.6
Msa0126120 AT1G68150.1 39.024 123 69 3 15 131 186 308 9.74e-22 89.7
Msa0126120 AT2G21900.1 43.750 96 50 2 31 122 74 169 1.63e-21 86.3
Msa0126120 AT4G30935.1 42.105 114 56 3 16 121 279 390 2.47e-21 89.4
Msa0126120 AT2G37260.3 55.556 72 32 0 59 130 266 337 3.65e-21 87.8
Msa0126120 AT2G37260.3 53.333 60 27 1 63 122 86 144 7.67e-15 70.5
Msa0126120 AT2G37260.2 55.556 72 32 0 59 130 264 335 3.80e-21 87.8
Msa0126120 AT2G37260.2 53.333 60 27 1 63 122 84 142 8.06e-15 70.5
Msa0126120 AT2G37260.1 55.556 72 32 0 59 130 346 417 5.81e-21 88.2
Msa0126120 AT2G37260.1 53.333 60 27 1 63 122 166 224 9.13e-15 70.5
Msa0126120 AT4G04450.2 46.835 79 41 1 49 126 185 263 2.93e-20 86.3
Msa0126120 AT4G04450.1 46.835 79 41 1 49 126 279 357 5.23e-20 85.9
Msa0126120 AT1G55600.1 50.000 88 43 1 34 121 280 366 6.78e-20 85.1
Msa0126120 AT5G15130.1 50.000 76 34 2 61 135 226 298 1.80e-19 84.3
Msa0126120 AT5G15130.2 44.211 95 44 3 61 146 184 278 2.39e-19 84.0
Msa0126120 AT1G62300.1 46.053 76 40 1 47 121 297 372 3.57e-19 83.2
Msa0126120 AT1G80840.1 42.857 77 43 1 60 135 144 220 8.02e-19 80.9
Msa0126120 AT2G46130.1 49.296 71 36 0 48 118 16 86 9.94e-19 76.6
Msa0126120 AT2G25000.2 46.774 62 32 1 61 121 102 163 3.88e-18 78.2
Msa0126120 AT2G25000.4 46.774 62 32 1 61 121 102 163 3.88e-18 78.2
Msa0126120 AT3G58710.2 40.157 127 55 5 17 134 31 145 5.37e-18 78.6
Msa0126120 AT2G25000.3 46.774 62 32 1 61 121 124 185 7.19e-18 77.8
Msa0126120 AT3G58710.1 39.844 128 55 5 17 134 31 146 7.81e-18 77.8
Msa0126120 AT2G25000.1 46.774 62 32 1 61 121 145 206 9.88e-18 77.8
Msa0126120 AT1G69310.3 50.000 72 32 1 47 118 132 199 1.39e-17 77.4
Msa0126120 AT4G31800.2 41.772 79 38 2 61 131 110 188 1.63e-17 76.6
Msa0126120 AT4G31800.1 42.857 77 36 2 63 131 177 253 2.30e-17 77.0
Msa0126120 AT1G18860.1 43.243 74 41 1 49 121 226 299 2.56e-17 78.2
Msa0126120 AT4G31550.1 50.000 72 35 1 49 119 233 304 3.38e-17 77.0
Msa0126120 AT4G31550.2 50.000 72 35 1 49 119 232 303 3.39e-17 77.0
Msa0126120 AT4G22070.4 47.297 74 38 1 49 121 284 357 5.36e-17 77.0
Msa0126120 AT4G22070.3 47.297 74 38 1 49 121 284 357 5.36e-17 77.0
Msa0126120 AT4G22070.2 47.297 74 38 1 49 121 284 357 5.36e-17 77.0
Msa0126120 AT4G22070.1 47.297 74 38 1 49 121 284 357 5.36e-17 77.0
Msa0126120 AT4G24240.1 46.575 73 38 1 49 120 268 340 1.17e-16 75.5
Msa0126120 AT2G23320.1 49.315 73 36 1 49 120 227 299 1.63e-16 75.1
Msa0126120 AT4G23550.1 47.945 73 34 2 59 127 137 209 3.89e-16 73.9
Msa0126120 AT5G43290.1 54.237 59 27 0 60 118 112 170 5.19e-16 73.2
Msa0126120 AT4G01720.1 45.946 74 39 1 49 121 226 299 6.96e-16 73.9
Msa0126120 AT2G24570.1 46.667 75 39 1 49 122 230 304 1.47e-15 72.4
Msa0126120 AT4G12020.11 48.780 82 41 1 2 82 580 661 1.74e-15 72.8
Msa0126120 AT4G12020.11 36.735 98 53 2 61 150 467 563 4.82e-13 65.9
Msa0126120 AT5G28650.1 43.902 82 45 1 49 129 249 330 1.76e-15 72.0
Msa0126120 AT4G01250.1 44.444 81 41 2 60 139 126 203 2.24e-15 71.6
Msa0126120 AT4G12020.6 48.780 82 41 1 2 82 580 661 2.25e-15 72.8
Msa0126120 AT4G12020.6 36.735 98 53 2 61 150 467 563 3.91e-13 66.2
Msa0126120 AT4G12020.8 48.780 82 41 1 2 82 580 661 2.25e-15 72.8
Msa0126120 AT4G12020.8 36.735 98 53 2 61 150 467 563 3.91e-13 66.2
Msa0126120 AT4G12020.3 48.780 82 41 1 2 82 580 661 2.30e-15 72.4
Msa0126120 AT4G12020.3 36.735 98 53 2 61 150 467 563 3.89e-13 66.2
Msa0126120 AT2G30590.1 47.887 71 36 1 49 118 300 370 2.30e-15 72.0
Msa0126120 AT4G12020.7 48.780 82 41 1 2 82 580 661 2.36e-15 72.4
Msa0126120 AT4G12020.7 36.735 98 53 2 61 150 467 563 3.88e-13 66.2
Msa0126120 AT4G12020.1 48.780 82 41 1 2 82 580 661 2.38e-15 72.4
Msa0126120 AT4G12020.1 36.735 98 53 2 61 150 467 563 3.95e-13 66.2
Msa0126120 AT4G12020.9 48.780 82 41 1 2 82 580 661 2.38e-15 72.4
Msa0126120 AT4G12020.9 36.735 98 53 2 61 150 467 563 3.95e-13 66.2
Msa0126120 AT4G12020.4 48.780 82 41 1 2 82 580 661 2.44e-15 72.4
Msa0126120 AT4G12020.4 36.735 98 53 2 61 150 467 563 3.78e-13 66.2
Msa0126120 AT4G12020.2 48.780 82 41 1 2 82 580 661 2.44e-15 72.4
Msa0126120 AT4G12020.2 36.735 98 53 2 61 150 467 563 4.00e-13 66.2
Msa0126120 AT4G12020.10 48.780 82 41 1 2 82 580 661 2.51e-15 72.4
Msa0126120 AT4G12020.10 36.735 98 53 2 61 150 467 563 4.20e-13 66.2
Msa0126120 AT4G12020.5 48.780 82 41 1 2 82 513 594 2.81e-15 72.4
Msa0126120 AT4G12020.5 36.735 98 53 2 61 150 400 496 4.23e-13 66.2
Msa0126120 AT3G04670.1 43.902 82 45 1 49 129 249 330 2.93e-15 71.6
Msa0126120 AT2G34830.1 43.038 79 43 2 45 122 199 276 9.28e-15 70.5
Msa0126120 AT2G34830.2 43.038 79 43 2 45 122 208 285 1.05e-14 70.5
Msa0126120 AT5G52830.1 45.000 80 40 2 52 127 155 234 2.09e-14 69.3
Msa0126120 AT1G30650.1 42.308 78 43 2 45 121 201 277 8.84e-14 67.8
Msa0126120 AT5G45050.2 49.180 61 30 1 63 122 1153 1213 9.15e-14 67.8
Msa0126120 AT5G45050.1 49.180 61 30 1 63 122 1181 1241 9.16e-14 67.8
Msa0126120 AT5G45050.4 49.180 61 30 1 63 122 1042 1102 9.18e-14 67.8
Msa0126120 AT1G29280.1 48.333 60 30 1 63 121 75 134 1.01e-13 66.6
Msa0126120 AT2G46130.2 45.070 71 35 1 48 118 16 82 1.06e-13 63.5
Msa0126120 AT3G01080.3 51.667 60 28 1 62 121 205 263 3.66e-13 65.9
Msa0126120 AT1G69810.1 41.333 75 40 3 61 133 202 274 4.54e-13 65.9
Msa0126120 AT1G69810.2 41.333 75 40 3 61 133 144 216 7.00e-13 65.1
Msa0126120 AT3G56400.1 36.842 76 41 2 60 128 118 193 5.42e-12 62.4
Msa0126120 AT5G45260.1 33.333 93 55 3 35 122 1181 1271 3.07e-11 60.8

Find 33 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAAAACCTACCTCCTTT+TGG 0.210912 1_3:+55027006 None:intergenic
GTTGTTATTATATTTATTCT+AGG 0.291981 1_3:+55026852 None:intergenic
AAGCAATATCACCTAGGATT+AGG 0.314028 1_3:+55026759 None:intergenic
TCTTAGACGATGGATATAAT+TGG 0.347263 1_3:-55026815 Msa0126120:CDS
AGCAATATCACCTAGGATTA+GGG 0.361293 1_3:+55026760 None:intergenic
TCATGACGTTCCAACATCTA+TGG 0.377282 1_3:-55025630 Msa0126120:CDS
GGATATAATTGGAGAAAATA+CGG 0.397885 1_3:-55026804 Msa0126120:CDS
TTTGACAATATTGGTAATGA+TGG 0.414983 1_3:-55025563 Msa0126120:CDS
ATCAAATAGGTTCTTCATAT+AGG 0.420582 1_3:-55026887 Msa0126120:CDS
GTCTAAGAGATCAATCTTGC+TGG 0.427915 1_3:+55026830 None:intergenic
TACGTTGTGATGACATCTTT+AGG 0.433584 1_3:+55025668 None:intergenic
ATCGCGATCTTAAATCAAAT+AGG 0.461929 1_3:-55026900 Msa0126120:CDS
AAAACTAGGCTCCTCAGAAA+TGG 0.462177 1_3:+55025583 None:intergenic
GAAAGCGTGTAGAGAGAGCT+TGG 0.508767 1_3:-55025697 Msa0126120:CDS
GCATAGGAAACCCTAATCCT+AGG 0.512114 1_3:-55026770 Msa0126120:intron
TACTACAAATGTACGGTACC+AGG 0.527593 1_3:-55025731 Msa0126120:CDS
ATATTTATTCTAGGCTCTGC+GGG 0.527972 1_3:+55026861 None:intergenic
GATATAATTGGAGAAAATAC+GGG 0.530666 1_3:-55026803 Msa0126120:CDS
GATGTCATCACAACGTATGT+AGG 0.533158 1_3:-55025662 Msa0126120:CDS
TGGCTATTAGCCATAGATGT+TGG 0.542428 1_3:+55025620 None:intergenic
AAGATTGATCTCTTAGACGA+TGG 0.544254 1_3:-55026825 Msa0126120:CDS
CGCTTTCGAATGCTACAACC+TGG 0.550383 1_3:+55025713 None:intergenic
CCAAGCGAAAATGAAGAACT+AGG 0.556758 1_3:-55027073 Msa0126120:CDS
AGGCTCCTCAGAAATGGTGT+TGG 0.564390 1_3:+55025589 None:intergenic
AAAGCGTGTAGAGAGAGCTT+GGG 0.573571 1_3:-55025696 Msa0126120:CDS
TATTTCCAACACCATTTCTG+AGG 0.589759 1_3:-55025594 Msa0126120:CDS
GCGTGTAGAGAGAGCTTGGG+TGG 0.595065 1_3:-55025693 Msa0126120:CDS
TATATTTATTCTAGGCTCTG+CGG 0.610323 1_3:+55026860 None:intergenic
TTACCAATATTGTCAAAACT+AGG 0.612412 1_3:+55025569 None:intergenic
TAGGAGCTACTACAAATGTA+CGG 0.634951 1_3:-55025738 Msa0126120:CDS
TACGGGCAACGAGTTTGCAT+AGG 0.651147 1_3:-55026786 Msa0126120:CDS
AAATGGTGTTGGAAATAGTG+TGG 0.703460 1_3:+55025600 None:intergenic
AGCGAAAATGAAGAACTAGG+TGG 0.762878 1_3:-55027070 Msa0126120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTTATTATATTTATTCT+AGG + chr1_3:55025780-55025799 None:intergenic 15.0%
!! AATCTATTGTAAATGAAATT+AGG - chr1_3:55026621-55026640 Msa0126120:intron 15.0%
!! ATCTATTGTAAATGAAATTA+GGG - chr1_3:55026622-55026641 Msa0126120:intron 15.0%
!!! GTTGTTATTATATTTATTCT+AGG + chr1_3:55025780-55025799 None:intergenic 15.0%
!! AATCTATTGTAAATGAAATT+AGG - chr1_3:55026621-55026640 Msa0126120:intron 15.0%
!! ATCTATTGTAAATGAAATTA+GGG - chr1_3:55026622-55026641 Msa0126120:intron 15.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_3:55025898-55025917 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG + chr1_3:55025971-55025990 None:intergenic 20.0%
!! TTATCCATGAATTATACTAT+AGG + chr1_3:55026123-55026142 None:intergenic 20.0%
!! TAAGCTGAAAAATATGTAAA+AGG - chr1_3:55026192-55026211 Msa0126120:intron 20.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_3:55025898-55025917 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG + chr1_3:55025971-55025990 None:intergenic 20.0%
!! TTATCCATGAATTATACTAT+AGG + chr1_3:55026123-55026142 None:intergenic 20.0%
!! TAAGCTGAAAAATATGTAAA+AGG - chr1_3:55026192-55026211 Msa0126120:intron 20.0%
! AAATGTAAATATGTTTGTCG+TGG - chr1_3:55025647-55025666 Msa0126120:CDS 25.0%
! ATCAAATAGGTTCTTCATAT+AGG - chr1_3:55025742-55025761 Msa0126120:intron 25.0%
! GGATATAATTGGAGAAAATA+CGG - chr1_3:55025825-55025844 Msa0126120:intron 25.0%
! GATATAATTGGAGAAAATAC+GGG - chr1_3:55025826-55025845 Msa0126120:intron 25.0%
! AAAGACAACAATAACATTCA+TGG + chr1_3:55025930-55025949 None:intergenic 25.0%
! AATTATTCAGATTCACAAGT+AGG - chr1_3:55025983-55026002 Msa0126120:intron 25.0%
! TTTCGATAGAAAAAAATACG+TGG - chr1_3:55026587-55026606 Msa0126120:intron 25.0%
! ATAGAAAAAAATACGTGGTT+TGG - chr1_3:55026592-55026611 Msa0126120:intron 25.0%
! TTGTAAATGAAATTAGGGTT+AGG - chr1_3:55026627-55026646 Msa0126120:intron 25.0%
! ACATGAGCATATATTGTTTA+CGG + chr1_3:55026703-55026722 None:intergenic 25.0%
! ATATATGCTCATGTAATTAG+TGG - chr1_3:55026709-55026728 Msa0126120:intron 25.0%
! AAATAATACGTGAAATTCAG+GGG + chr1_3:55026794-55026813 None:intergenic 25.0%
! CAAATAATACGTGAAATTCA+GGG + chr1_3:55026795-55026814 None:intergenic 25.0%
! ACAAATAATACGTGAAATTC+AGG + chr1_3:55026796-55026815 None:intergenic 25.0%
! TTACCAATATTGTCAAAACT+AGG + chr1_3:55027063-55027082 None:intergenic 25.0%
!!! TTTGACAATATTGGTAATGA+TGG - chr1_3:55027066-55027085 Msa0126120:CDS 25.0%
! AAATGTAAATATGTTTGTCG+TGG - chr1_3:55025647-55025666 Msa0126120:CDS 25.0%
! ATCAAATAGGTTCTTCATAT+AGG - chr1_3:55025742-55025761 Msa0126120:intron 25.0%
! GGATATAATTGGAGAAAATA+CGG - chr1_3:55025825-55025844 Msa0126120:intron 25.0%
! GATATAATTGGAGAAAATAC+GGG - chr1_3:55025826-55025845 Msa0126120:intron 25.0%
! AAAGACAACAATAACATTCA+TGG + chr1_3:55025930-55025949 None:intergenic 25.0%
! AATTATTCAGATTCACAAGT+AGG - chr1_3:55025983-55026002 Msa0126120:intron 25.0%
! TTTCGATAGAAAAAAATACG+TGG - chr1_3:55026587-55026606 Msa0126120:intron 25.0%
! ATAGAAAAAAATACGTGGTT+TGG - chr1_3:55026592-55026611 Msa0126120:intron 25.0%
! TTGTAAATGAAATTAGGGTT+AGG - chr1_3:55026627-55026646 Msa0126120:intron 25.0%
! ACATGAGCATATATTGTTTA+CGG + chr1_3:55026703-55026722 None:intergenic 25.0%
! ATATATGCTCATGTAATTAG+TGG - chr1_3:55026709-55026728 Msa0126120:intron 25.0%
! AAATAATACGTGAAATTCAG+GGG + chr1_3:55026794-55026813 None:intergenic 25.0%
! CAAATAATACGTGAAATTCA+GGG + chr1_3:55026795-55026814 None:intergenic 25.0%
! ACAAATAATACGTGAAATTC+AGG + chr1_3:55026796-55026815 None:intergenic 25.0%
! TTACCAATATTGTCAAAACT+AGG + chr1_3:55027063-55027082 None:intergenic 25.0%
!!! TTTGACAATATTGGTAATGA+TGG - chr1_3:55027066-55027085 Msa0126120:CDS 25.0%
! AATAAAACCTACCTCCTTTT+GGG + chr1_3:55025625-55025644 None:intergenic 30.0%
ATCGCGATCTTAAATCAAAT+AGG - chr1_3:55025729-55025748 Msa0126120:CDS 30.0%
TATATTTATTCTAGGCTCTG+CGG + chr1_3:55025772-55025791 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG - chr1_3:55025814-55025833 Msa0126120:intron 30.0%
TCCTCCTATAGTATAATTCA+TGG - chr1_3:55026116-55026135 Msa0126120:intron 30.0%
TCCATGAATTATACTATAGG+AGG + chr1_3:55026120-55026139 None:intergenic 30.0%
CTTAGAGTTACAAATTCTAC+TGG + chr1_3:55026176-55026195 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG + chr1_3:55026237-55026256 None:intergenic 30.0%
ATCCATACAAGAATCGAAAT+CGG - chr1_3:55026372-55026391 Msa0126120:intron 30.0%
CATGAGCATATATTGTTTAC+GGG + chr1_3:55026702-55026721 None:intergenic 30.0%
AATAATACGTGAAATTCAGG+GGG + chr1_3:55026793-55026812 None:intergenic 30.0%
! AATAAAACCTACCTCCTTTT+GGG + chr1_3:55025625-55025644 None:intergenic 30.0%
ATCGCGATCTTAAATCAAAT+AGG - chr1_3:55025729-55025748 Msa0126120:CDS 30.0%
TATATTTATTCTAGGCTCTG+CGG + chr1_3:55025772-55025791 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG - chr1_3:55025814-55025833 Msa0126120:intron 30.0%
TCCTCCTATAGTATAATTCA+TGG - chr1_3:55026116-55026135 Msa0126120:intron 30.0%
TCCATGAATTATACTATAGG+AGG + chr1_3:55026120-55026139 None:intergenic 30.0%
CTTAGAGTTACAAATTCTAC+TGG + chr1_3:55026176-55026195 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG + chr1_3:55026237-55026256 None:intergenic 30.0%
ATCCATACAAGAATCGAAAT+CGG - chr1_3:55026372-55026391 Msa0126120:intron 30.0%
CATGAGCATATATTGTTTAC+GGG + chr1_3:55026702-55026721 None:intergenic 30.0%
AATAATACGTGAAATTCAGG+GGG + chr1_3:55026793-55026812 None:intergenic 30.0%
! ATAAAACCTACCTCCTTTTG+GGG + chr1_3:55025624-55025643 None:intergenic 35.0%
! CAATAAAACCTACCTCCTTT+TGG + chr1_3:55025626-55025645 None:intergenic 35.0%
ATATTTATTCTAGGCTCTGC+GGG + chr1_3:55025771-55025790 None:intergenic 35.0%
AAGATTGATCTCTTAGACGA+TGG - chr1_3:55025804-55025823 Msa0126120:intron 35.0%
AGCAATATCACCTAGGATTA+GGG + chr1_3:55025872-55025891 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG + chr1_3:55025873-55025892 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG + chr1_3:55026057-55026076 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG - chr1_3:55026054-55026073 Msa0126120:intron 35.0%
ATGTCTCTTAAGCTGACAAT+GGG - chr1_3:55026079-55026098 Msa0126120:intron 35.0%
ACCGTTTAGATTTCAAGAGA+AGG - chr1_3:55026296-55026315 Msa0126120:intron 35.0%
CCCTTCTCTTGAAATCTAAA+CGG + chr1_3:55026300-55026319 None:intergenic 35.0%
CCGTTTAGATTTCAAGAGAA+GGG - chr1_3:55026297-55026316 Msa0126120:intron 35.0%
CGTTTAGATTTCAAGAGAAG+GGG - chr1_3:55026298-55026317 Msa0126120:intron 35.0%
TCCATACAAGAATCGAAATC+GGG - chr1_3:55026373-55026392 Msa0126120:intron 35.0%
! TGATAGTGAAAATGTGGGTT+GGG + chr1_3:55026494-55026513 None:intergenic 35.0%
!! TTGATAGTGAAAATGTGGGT+TGG + chr1_3:55026495-55026514 None:intergenic 35.0%
!! GGGTTTGATAGTGAAAATGT+GGG + chr1_3:55026499-55026518 None:intergenic 35.0%
!! ACAAATGGGTTGATTAGGTT+CGG + chr1_3:55026520-55026539 None:intergenic 35.0%
CTAATCAACCCATTTGTGAA+CGG - chr1_3:55026523-55026542 Msa0126120:intron 35.0%
ATACCTGAAACCAAACTTTG+TGG - chr1_3:55026660-55026679 Msa0126120:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG - chr1_3:55026661-55026680 Msa0126120:intron 35.0%
TGCTTGCCTGTATAATGTTT+AGG - chr1_3:55026872-55026891 Msa0126120:CDS 35.0%
GTAGCTCCTAAACATTATAC+AGG + chr1_3:55026881-55026900 None:intergenic 35.0%
TAGGAGCTACTACAAATGTA+CGG - chr1_3:55026891-55026910 Msa0126120:CDS 35.0%
TACGTTGTGATGACATCTTT+AGG + chr1_3:55026964-55026983 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG + chr1_3:55027032-55027051 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG - chr1_3:55027035-55027054 Msa0126120:CDS 35.0%
!!! GAGCCTAGTTTTGACAATAT+TGG - chr1_3:55027057-55027076 Msa0126120:CDS 35.0%
! ATAAAACCTACCTCCTTTTG+GGG + chr1_3:55025624-55025643 None:intergenic 35.0%
! CAATAAAACCTACCTCCTTT+TGG + chr1_3:55025626-55025645 None:intergenic 35.0%
ATATTTATTCTAGGCTCTGC+GGG + chr1_3:55025771-55025790 None:intergenic 35.0%
AAGATTGATCTCTTAGACGA+TGG - chr1_3:55025804-55025823 Msa0126120:intron 35.0%
AGCAATATCACCTAGGATTA+GGG + chr1_3:55025872-55025891 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG + chr1_3:55025873-55025892 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG + chr1_3:55026057-55026076 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG - chr1_3:55026054-55026073 Msa0126120:intron 35.0%
ATGTCTCTTAAGCTGACAAT+GGG - chr1_3:55026079-55026098 Msa0126120:intron 35.0%
ACCGTTTAGATTTCAAGAGA+AGG - chr1_3:55026296-55026315 Msa0126120:intron 35.0%
CCCTTCTCTTGAAATCTAAA+CGG + chr1_3:55026300-55026319 None:intergenic 35.0%
CCGTTTAGATTTCAAGAGAA+GGG - chr1_3:55026297-55026316 Msa0126120:intron 35.0%
CGTTTAGATTTCAAGAGAAG+GGG - chr1_3:55026298-55026317 Msa0126120:intron 35.0%
TCCATACAAGAATCGAAATC+GGG - chr1_3:55026373-55026392 Msa0126120:intron 35.0%
! TGATAGTGAAAATGTGGGTT+GGG + chr1_3:55026494-55026513 None:intergenic 35.0%
!! TTGATAGTGAAAATGTGGGT+TGG + chr1_3:55026495-55026514 None:intergenic 35.0%
!! GGGTTTGATAGTGAAAATGT+GGG + chr1_3:55026499-55026518 None:intergenic 35.0%
!! ACAAATGGGTTGATTAGGTT+CGG + chr1_3:55026520-55026539 None:intergenic 35.0%
CTAATCAACCCATTTGTGAA+CGG - chr1_3:55026523-55026542 Msa0126120:intron 35.0%
ATACCTGAAACCAAACTTTG+TGG - chr1_3:55026660-55026679 Msa0126120:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG - chr1_3:55026661-55026680 Msa0126120:intron 35.0%
TGCTTGCCTGTATAATGTTT+AGG - chr1_3:55026872-55026891 Msa0126120:CDS 35.0%
GTAGCTCCTAAACATTATAC+AGG + chr1_3:55026881-55026900 None:intergenic 35.0%
TAGGAGCTACTACAAATGTA+CGG - chr1_3:55026891-55026910 Msa0126120:CDS 35.0%
TACGTTGTGATGACATCTTT+AGG + chr1_3:55026964-55026983 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG + chr1_3:55027032-55027051 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG - chr1_3:55027035-55027054 Msa0126120:CDS 35.0%
!!! GAGCCTAGTTTTGACAATAT+TGG - chr1_3:55027057-55027076 Msa0126120:CDS 35.0%
!! CCTAGTTCTTCATTTTCGCT+TGG + chr1_3:55025559-55025578 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG - chr1_3:55025556-55025575 Msa0126120:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG - chr1_3:55025559-55025578 Msa0126120:CDS 40.0%
! TAAAACCTACCTCCTTTTGG+GGG + chr1_3:55025623-55025642 None:intergenic 40.0%
GTCTAAGAGATCAATCTTGC+TGG + chr1_3:55025802-55025821 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG + chr1_3:55025879-55025898 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG + chr1_3:55026069-55026088 None:intergenic 40.0%
CATGTCTCTTAAGCTGACAA+TGG - chr1_3:55026078-55026097 Msa0126120:intron 40.0%
TGTCTCTTAAGCTGACAATG+GGG - chr1_3:55026080-55026099 Msa0126120:intron 40.0%
CACGGCAGACTCAAATTATT+GGG + chr1_3:55026325-55026344 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG + chr1_3:55026326-55026345 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG - chr1_3:55026325-55026344 Msa0126120:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG - chr1_3:55026326-55026345 Msa0126120:intron 40.0%
ACCCGATTTCGATTCTTGTA+TGG + chr1_3:55026377-55026396 None:intergenic 40.0%
! CGTTAAAAGTTGAACGGGTT+GGG + chr1_3:55026457-55026476 None:intergenic 40.0%
! CCAACCCGTTCAACTTTTAA+CGG - chr1_3:55026455-55026474 Msa0126120:intron 40.0%
! CAACCCGTTCAACTTTTAAC+GGG - chr1_3:55026456-55026475 Msa0126120:intron 40.0%
CAACCCGTTAAAAGTTGAAC+GGG + chr1_3:55026462-55026481 None:intergenic 40.0%
CCAACCCGTTAAAAGTTGAA+CGG + chr1_3:55026463-55026482 None:intergenic 40.0%
!!! CGTTCAACTTTTAACGGGTT+GGG - chr1_3:55026461-55026480 Msa0126120:intron 40.0%
!! CGGGTTTGATAGTGAAAATG+TGG + chr1_3:55026500-55026519 None:intergenic 40.0%
!! CAAATGGGTTGATTAGGTTC+GGG + chr1_3:55026519-55026538 None:intergenic 40.0%
!! CGTTCACAAATGGGTTGATT+AGG + chr1_3:55026525-55026544 None:intergenic 40.0%
AACCCATTTGTGAACGGTTT+GGG - chr1_3:55026529-55026548 Msa0126120:intron 40.0%
AACCCAAACCGTTCACAAAT+GGG + chr1_3:55026534-55026553 None:intergenic 40.0%
! ATGTAATTAGTGGACCTGGT+CGG - chr1_3:55026719-55026738 Msa0126120:intron 40.0%
TACTACAAATGTACGGTACC+AGG - chr1_3:55026898-55026917 Msa0126120:CDS 40.0%
GATGTCATCACAACGTATGT+AGG - chr1_3:55026967-55026986 Msa0126120:intron 40.0%
TCATGACGTTCCAACATCTA+TGG - chr1_3:55026999-55027018 Msa0126120:intron 40.0%
TGGCTATTAGCCATAGATGT+TGG + chr1_3:55027012-55027031 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG + chr1_3:55027049-55027068 None:intergenic 40.0%
!! CCTAGTTCTTCATTTTCGCT+TGG + chr1_3:55025559-55025578 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG - chr1_3:55025556-55025575 Msa0126120:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG - chr1_3:55025559-55025578 Msa0126120:CDS 40.0%
! TAAAACCTACCTCCTTTTGG+GGG + chr1_3:55025623-55025642 None:intergenic 40.0%
GTCTAAGAGATCAATCTTGC+TGG + chr1_3:55025802-55025821 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG + chr1_3:55025879-55025898 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG + chr1_3:55026069-55026088 None:intergenic 40.0%
CATGTCTCTTAAGCTGACAA+TGG - chr1_3:55026078-55026097 Msa0126120:intron 40.0%
TGTCTCTTAAGCTGACAATG+GGG - chr1_3:55026080-55026099 Msa0126120:intron 40.0%
CACGGCAGACTCAAATTATT+GGG + chr1_3:55026325-55026344 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG + chr1_3:55026326-55026345 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG - chr1_3:55026325-55026344 Msa0126120:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG - chr1_3:55026326-55026345 Msa0126120:intron 40.0%
ACCCGATTTCGATTCTTGTA+TGG + chr1_3:55026377-55026396 None:intergenic 40.0%
! CGTTAAAAGTTGAACGGGTT+GGG + chr1_3:55026457-55026476 None:intergenic 40.0%
! CCAACCCGTTCAACTTTTAA+CGG - chr1_3:55026455-55026474 Msa0126120:intron 40.0%
! CAACCCGTTCAACTTTTAAC+GGG - chr1_3:55026456-55026475 Msa0126120:intron 40.0%
CAACCCGTTAAAAGTTGAAC+GGG + chr1_3:55026462-55026481 None:intergenic 40.0%
CCAACCCGTTAAAAGTTGAA+CGG + chr1_3:55026463-55026482 None:intergenic 40.0%
!!! CGTTCAACTTTTAACGGGTT+GGG - chr1_3:55026461-55026480 Msa0126120:intron 40.0%
!! CGGGTTTGATAGTGAAAATG+TGG + chr1_3:55026500-55026519 None:intergenic 40.0%
!! CAAATGGGTTGATTAGGTTC+GGG + chr1_3:55026519-55026538 None:intergenic 40.0%
!! CGTTCACAAATGGGTTGATT+AGG + chr1_3:55026525-55026544 None:intergenic 40.0%
AACCCATTTGTGAACGGTTT+GGG - chr1_3:55026529-55026548 Msa0126120:intron 40.0%
AACCCAAACCGTTCACAAAT+GGG + chr1_3:55026534-55026553 None:intergenic 40.0%
! ATGTAATTAGTGGACCTGGT+CGG - chr1_3:55026719-55026738 Msa0126120:intron 40.0%
TACTACAAATGTACGGTACC+AGG - chr1_3:55026898-55026917 Msa0126120:CDS 40.0%
GATGTCATCACAACGTATGT+AGG - chr1_3:55026967-55026986 Msa0126120:intron 40.0%
TCATGACGTTCCAACATCTA+TGG - chr1_3:55026999-55027018 Msa0126120:intron 40.0%
TGGCTATTAGCCATAGATGT+TGG + chr1_3:55027012-55027031 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG + chr1_3:55027049-55027068 None:intergenic 40.0%
GCATAGGAAACCCTAATCCT+AGG - chr1_3:55025859-55025878 Msa0126120:intron 45.0%
AAATCGGGTTCCCCTGAATA+GGG - chr1_3:55026388-55026407 Msa0126120:intron 45.0%
!! AACGGGTTGGGTAACTAGTT+TGG + chr1_3:55026445-55026464 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGT+TGG + chr1_3:55026458-55026477 None:intergenic 45.0%
!! CCGTTCAACTTTTAACGGGT+TGG - chr1_3:55026460-55026479 Msa0126120:intron 45.0%
CAACCCATTTGTGAACGGTT+TGG - chr1_3:55026528-55026547 Msa0126120:intron 45.0%
GAACCCAAACCGTTCACAAA+TGG + chr1_3:55026535-55026554 None:intergenic 45.0%
! GACCCACAAAGTTTGGTTTC+AGG + chr1_3:55026666-55026685 None:intergenic 45.0%
CCAAACTTTGTGGGTCAAGT+CGG - chr1_3:55026670-55026689 Msa0126120:intron 45.0%
CAAACTTTGTGGGTCAAGTC+GGG - chr1_3:55026671-55026690 Msa0126120:intron 45.0%
! GCTCATGTAATTAGTGGACC+TGG - chr1_3:55026715-55026734 Msa0126120:intron 45.0%
GTTTCAATCACCAGGTTCGT+GGG - chr1_3:55026741-55026760 Msa0126120:intron 45.0%
ATACGTGAAATTCAGGGGGT+CGG + chr1_3:55026789-55026808 None:intergenic 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG - chr1_3:55026933-55026952 Msa0126120:intron 45.0%
GCATAGGAAACCCTAATCCT+AGG - chr1_3:55025859-55025878 Msa0126120:intron 45.0%
AAATCGGGTTCCCCTGAATA+GGG - chr1_3:55026388-55026407 Msa0126120:intron 45.0%
!! AACGGGTTGGGTAACTAGTT+TGG + chr1_3:55026445-55026464 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGT+TGG + chr1_3:55026458-55026477 None:intergenic 45.0%
!! CCGTTCAACTTTTAACGGGT+TGG - chr1_3:55026460-55026479 Msa0126120:intron 45.0%
CAACCCATTTGTGAACGGTT+TGG - chr1_3:55026528-55026547 Msa0126120:intron 45.0%
GAACCCAAACCGTTCACAAA+TGG + chr1_3:55026535-55026554 None:intergenic 45.0%
! GACCCACAAAGTTTGGTTTC+AGG + chr1_3:55026666-55026685 None:intergenic 45.0%
CCAAACTTTGTGGGTCAAGT+CGG - chr1_3:55026670-55026689 Msa0126120:intron 45.0%
CAAACTTTGTGGGTCAAGTC+GGG - chr1_3:55026671-55026690 Msa0126120:intron 45.0%
! GCTCATGTAATTAGTGGACC+TGG - chr1_3:55026715-55026734 Msa0126120:intron 45.0%
GTTTCAATCACCAGGTTCGT+GGG - chr1_3:55026741-55026760 Msa0126120:intron 45.0%
ATACGTGAAATTCAGGGGGT+CGG + chr1_3:55026789-55026808 None:intergenic 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG - chr1_3:55026933-55026952 Msa0126120:intron 45.0%
TTGTTGAACCTGCCCCCAAA+AGG - chr1_3:55025608-55025627 Msa0126120:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG - chr1_3:55025843-55025862 Msa0126120:intron 50.0%
TTAAGCTGACAATGGGGTGC+AGG - chr1_3:55026086-55026105 Msa0126120:intron 50.0%
TAAGCTGACAATGGGGTGCA+GGG - chr1_3:55026087-55026106 Msa0126120:intron 50.0%
GCCATGCTATACTTCCCACA+CGG + chr1_3:55026343-55026362 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG - chr1_3:55026387-55026406 Msa0126120:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG - chr1_3:55026389-55026408 Msa0126120:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG - chr1_3:55026404-55026423 Msa0126120:intron 50.0%
! TTGTGAACGGTTTGGGTTCG+CGG - chr1_3:55026536-55026555 Msa0126120:intron 50.0%
! CCGACTTGACCCACAAAGTT+TGG + chr1_3:55026673-55026692 None:intergenic 50.0%
GGTTTCAATCACCAGGTTCG+TGG - chr1_3:55026740-55026759 Msa0126120:intron 50.0%
CGCTTTCGAATGCTACAACC+TGG + chr1_3:55026919-55026938 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG - chr1_3:55026932-55026951 Msa0126120:intron 50.0%
AGGCTCCTCAGAAATGGTGT+TGG + chr1_3:55027043-55027062 None:intergenic 50.0%
TTGTTGAACCTGCCCCCAAA+AGG - chr1_3:55025608-55025627 Msa0126120:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG - chr1_3:55025843-55025862 Msa0126120:intron 50.0%
TTAAGCTGACAATGGGGTGC+AGG - chr1_3:55026086-55026105 Msa0126120:intron 50.0%
TAAGCTGACAATGGGGTGCA+GGG - chr1_3:55026087-55026106 Msa0126120:intron 50.0%
GCCATGCTATACTTCCCACA+CGG + chr1_3:55026343-55026362 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG - chr1_3:55026387-55026406 Msa0126120:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG - chr1_3:55026389-55026408 Msa0126120:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG - chr1_3:55026404-55026423 Msa0126120:intron 50.0%
! TTGTGAACGGTTTGGGTTCG+CGG - chr1_3:55026536-55026555 Msa0126120:intron 50.0%
! CCGACTTGACCCACAAAGTT+TGG + chr1_3:55026673-55026692 None:intergenic 50.0%
GGTTTCAATCACCAGGTTCG+TGG - chr1_3:55026740-55026759 Msa0126120:intron 50.0%
CGCTTTCGAATGCTACAACC+TGG + chr1_3:55026919-55026938 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG - chr1_3:55026932-55026951 Msa0126120:intron 50.0%
AGGCTCCTCAGAAATGGTGT+TGG + chr1_3:55027043-55027062 None:intergenic 50.0%
TTGAACCTGCCCCCAAAAGG+AGG - chr1_3:55025611-55025630 Msa0126120:CDS 55.0%
AAGCTGACAATGGGGTGCAG+GGG - chr1_3:55026088-55026107 Msa0126120:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG - chr1_3:55026339-55026358 Msa0126120:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG + chr1_3:55026401-55026420 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG - chr1_3:55026398-55026417 Msa0126120:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG + chr1_3:55026402-55026421 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG - chr1_3:55026399-55026418 Msa0126120:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG + chr1_3:55026403-55026422 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG - chr1_3:55026403-55026422 Msa0126120:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG - chr1_3:55026414-55026433 Msa0126120:intron 55.0%
CCTGGTGATTGAAACCGACC+AGG + chr1_3:55026736-55026755 None:intergenic 55.0%
! CCTGGTCGGTTTCAATCACC+AGG - chr1_3:55026733-55026752 Msa0126120:intron 55.0%
! GTCGGAGTGTTCATGGGTGT+GGG + chr1_3:55026771-55026790 None:intergenic 55.0%
TTGAACCTGCCCCCAAAAGG+AGG - chr1_3:55025611-55025630 Msa0126120:CDS 55.0%
AAGCTGACAATGGGGTGCAG+GGG - chr1_3:55026088-55026107 Msa0126120:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG - chr1_3:55026339-55026358 Msa0126120:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG + chr1_3:55026401-55026420 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG - chr1_3:55026398-55026417 Msa0126120:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG + chr1_3:55026402-55026421 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG - chr1_3:55026399-55026418 Msa0126120:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG + chr1_3:55026403-55026422 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG - chr1_3:55026403-55026422 Msa0126120:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG - chr1_3:55026414-55026433 Msa0126120:intron 55.0%
CCTGGTGATTGAAACCGACC+AGG + chr1_3:55026736-55026755 None:intergenic 55.0%
! CCTGGTCGGTTTCAATCACC+AGG - chr1_3:55026733-55026752 Msa0126120:intron 55.0%
! GTCGGAGTGTTCATGGGTGT+GGG + chr1_3:55026771-55026790 None:intergenic 55.0%
ACCTGCCCCCAAAAGGAGGT+AGG - chr1_3:55025615-55025634 Msa0126120:CDS 60.0%
!! ACCTACCTCCTTTTGGGGGC+AGG + chr1_3:55025619-55025638 None:intergenic 60.0%
AGCTGACAATGGGGTGCAGG+GGG - chr1_3:55026089-55026108 Msa0126120:intron 60.0%
! TGTGGGTTGACCCACGAACC+TGG + chr1_3:55026754-55026773 None:intergenic 60.0%
! GGTCGGAGTGTTCATGGGTG+TGG + chr1_3:55026772-55026791 None:intergenic 60.0%
! CAGGGGGTCGGAGTGTTCAT+GGG + chr1_3:55026777-55026796 None:intergenic 60.0%
! TCAGGGGGTCGGAGTGTTCA+TGG + chr1_3:55026778-55026797 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG - chr1_3:55026936-55026955 Msa0126120:intron 60.0%
ACCTGCCCCCAAAAGGAGGT+AGG - chr1_3:55025615-55025634 Msa0126120:CDS 60.0%
!! ACCTACCTCCTTTTGGGGGC+AGG + chr1_3:55025619-55025638 None:intergenic 60.0%
AGCTGACAATGGGGTGCAGG+GGG - chr1_3:55026089-55026108 Msa0126120:intron 60.0%
! TGTGGGTTGACCCACGAACC+TGG + chr1_3:55026754-55026773 None:intergenic 60.0%
! GGTCGGAGTGTTCATGGGTG+TGG + chr1_3:55026772-55026791 None:intergenic 60.0%
! CAGGGGGTCGGAGTGTTCAT+GGG + chr1_3:55026777-55026796 None:intergenic 60.0%
! TCAGGGGGTCGGAGTGTTCA+TGG + chr1_3:55026778-55026797 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG - chr1_3:55026936-55026955 Msa0126120:intron 60.0%
!! GGGGTGTACACGGGTTGGGT+TGG - chr1_3:55026408-55026427 Msa0126120:intron 65.0%
!! GGGGTGTACACGGGTTGGGT+TGG - chr1_3:55026408-55026427 Msa0126120:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55025550 55027101 55025550 ID=Msa0126120;Name=Msa0126120
chr1_3 mRNA 55025550 55027101 55025550 ID=Msa0126120-mRNA-1;Parent=Msa0126120;Name=Msa0126120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|150
chr1_3 exon 55027019 55027101 55027019 ID=Msa0126120-mRNA-1:exon:17005;Parent=Msa0126120-mRNA-1
chr1_3 exon 55026771 55026932 55026771 ID=Msa0126120-mRNA-1:exon:17004;Parent=Msa0126120-mRNA-1
chr1_3 exon 55025550 55025757 55025550 ID=Msa0126120-mRNA-1:exon:17003;Parent=Msa0126120-mRNA-1
chr1_3 CDS 55027019 55027101 55027019 ID=Msa0126120-mRNA-1:cds;Parent=Msa0126120-mRNA-1
chr1_3 CDS 55026771 55026932 55026771 ID=Msa0126120-mRNA-1:cds;Parent=Msa0126120-mRNA-1
chr1_3 CDS 55025550 55025757 55025550 ID=Msa0126120-mRNA-1:cds;Parent=Msa0126120-mRNA-1
Gene Sequence

>Msa0126120

ATGGAACCAAGCGAAAATGAAGAACTAGGTGGTGATGAAATTGAAGTTGATCGAAAAATTGTTGAACCTGCCCCCAAAAGGAGAAATGCAGAGATCGCGATCTTAAATCAAATAGGTTCTTCATATAGGTCTCCCGCAGAGCCTAGAATAAATATAATAACAACCAGCAAGATTGATCTCTTAGACGATGGATATAATTGGAGAAAATACGGGCAACGAGTTTGCATAGGAAACCCTAATCCTAGGAGCTACTACAAATGTACGGTACCAGGTTGTAGCATTCGAAAGCGTGTAGAGAGAGCTTGGGTGGATCCTAAAGATGTCATCACAACGTATGTAGGAAGACATAATCATGACGTTCCAACATCTATGGCTAATAGCCACACTATTTCCAACACCATTTCTGAGGAGCCTAGTTTTGACAATATTGGTAATGATGGCGACAATATTTAA
Protein sequence

>Msa0126120

MEPSENEELGGDEIEVDRKIVEPAPKRRNAEIAILNQIGSSYRSPAEPRINIITTSKIDLLDDGYNWRKYGQRVCIGNPNPRSYYKCTVPGCSIRKRVERAWVDPKDVITTYVGRHNHDVPTSMANSHTISNTISEEPSFDNIGNDGDNI*