AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126390 MtrunA17_Chr1g0189391 80.055 361 32 3 140 487 1 334 0.0 546
Msa0126390 MtrunA17_Chr6g0485431 46.959 411 166 8 79 487 1 361 7.27e-111 332
Msa0126390 MtrunA17_Chr7g0249311 57.746 71 29 1 223 293 379 448 1.94e-21 97.8
Msa0126390 MtrunA17_Chr7g0249311 37.778 90 47 3 219 301 155 242 4.50e-11 65.5
Msa0126390 MtrunA17_Chr7g0218081 50.617 81 39 1 213 293 387 466 3.15e-21 96.7
Msa0126390 MtrunA17_Chr7g0218081 43.023 86 43 3 236 321 228 307 1.31e-11 66.6
Msa0126390 MtrunA17_Chr7g0243891 32.850 207 120 7 156 348 280 481 3.54e-21 96.7
Msa0126390 MtrunA17_Chr4g0042831 46.875 96 49 2 199 293 240 334 7.78e-21 94.4
Msa0126390 MtrunA17_Chr8g0383251 50.667 75 36 1 219 293 91 164 1.05e-20 89.7
Msa0126390 MtrunA17_Chr3g0079691 33.333 213 117 11 175 374 439 639 1.48e-20 95.1
Msa0126390 MtrunA17_Chr5g0418191 47.826 92 47 1 223 314 307 397 3.36e-20 92.8
Msa0126390 MtrunA17_Chr7g0249301 54.930 71 31 1 223 293 279 348 3.37e-20 92.4
Msa0126390 MtrunA17_Chr1g0150801 50.667 75 36 1 219 293 85 158 5.32e-20 87.0
Msa0126390 MtrunA17_Chr5g0445311 37.226 137 82 2 157 293 288 420 7.00e-20 92.8
Msa0126390 MtrunA17_Chr4g0004911 44.762 105 56 2 189 293 290 392 9.58e-20 92.0
Msa0126390 MtrunA17_Chr3g0129361 52.055 73 34 1 223 295 131 202 1.09e-19 87.8
Msa0126390 MtrunA17_Chr8g0383351 53.521 71 32 1 228 298 152 221 1.59e-19 87.8
Msa0126390 MtrunA17_Chr3g0101131 53.521 71 32 1 223 293 402 471 2.88e-19 90.9
Msa0126390 MtrunA17_Chr3g0106491 54.930 71 31 1 223 293 352 421 3.67e-19 90.1
Msa0126390 MtrunA17_Chr3g0106491 43.333 90 42 4 236 324 198 279 4.53e-11 65.1
Msa0126390 MtrunA17_Chr5g0432161 54.930 71 31 1 223 293 408 477 5.01e-19 90.1
Msa0126390 MtrunA17_Chr7g0270191 41.748 103 47 3 223 324 132 222 7.52e-19 87.0
Msa0126390 MtrunA17_Chr3g0129321 48.000 75 38 1 219 293 101 174 5.24e-18 82.4
Msa0126390 MtrunA17_Chr4g0051881 43.810 105 51 4 223 327 165 261 7.61e-18 84.7
Msa0126390 MtrunA17_Chr8g0335811 48.684 76 38 1 223 298 141 215 8.30e-18 82.4
Msa0126390 MtrunA17_Chr7g0263531 51.429 70 33 1 224 293 349 417 2.96e-17 84.0
Msa0126390 MtrunA17_Chr4g0068541 48.684 76 37 2 223 297 195 269 3.67e-17 83.6
Msa0126390 MtrunA17_Chr1g0194481 49.296 71 35 1 223 293 145 214 6.13e-17 82.0
Msa0126390 MtrunA17_Chr5g0447701 45.205 73 39 1 223 295 239 310 1.21e-16 81.6
Msa0126390 MtrunA17_Chr7g0224801 52.857 70 28 2 226 293 83 149 2.12e-16 77.0
Msa0126390 MtrunA17_Chr1g0188941 50.725 69 33 1 225 293 40 107 3.37e-16 74.7
Msa0126390 MtrunA17_Chr7g0248721 47.887 71 35 1 223 293 128 196 4.65e-16 77.4
Msa0126390 MtrunA17_Chr2g0294231 49.296 71 35 1 223 293 190 259 4.72e-16 79.7
Msa0126390 MtrunA17_Chr5g0418781 45.946 74 39 1 223 296 111 183 3.38e-15 75.9
Msa0126390 MtrunA17_Chr5g0443131 46.479 71 37 1 223 293 144 213 5.56e-15 75.9
Msa0126390 MtrunA17_Chr8g0386241 44.595 74 40 1 220 293 87 159 7.91e-15 72.8
Msa0126390 MtrunA17_Chr7g0238921 56.897 58 24 1 236 293 124 180 2.02e-14 74.3
Msa0126390 MtrunA17_Chr4g0074001 38.462 104 62 2 199 301 321 423 3.51e-14 74.7
Msa0126390 MtrunA17_Chr7g0270831 38.235 102 57 3 197 293 173 273 8.51e-14 73.2
Msa0126390 MtrunA17_Chr4g0075201 43.056 72 39 2 223 293 254 324 5.17e-13 71.2
Msa0126390 MtrunA17_Chr2g0322391 42.466 73 40 2 223 294 336 407 5.83e-13 71.2
Msa0126390 MtrunA17_Chr3g0139021 40.594 101 47 4 194 293 283 371 6.02e-13 70.5
Msa0126390 MtrunA17_Chr7g0228941 49.254 67 32 2 233 298 49 114 7.06e-13 65.5
Msa0126390 MtrunA17_Chr3g0099641 42.466 73 40 2 223 294 238 309 7.73e-13 70.5
Msa0126390 MtrunA17_Chr2g0288871 43.056 72 39 2 223 293 292 362 8.87e-13 70.5
Msa0126390 MtrunA17_Chr2g0302391 27.604 192 127 6 112 293 79 268 1.24e-12 69.7
Msa0126390 MtrunA17_Chr1g0147881 53.226 62 27 2 233 293 259 319 1.51e-12 68.9
Msa0126390 MtrunA17_Chr8g0348311 39.216 102 45 4 193 293 127 212 1.54e-12 68.6
Msa0126390 MtrunA17_Chr4g0025061 44.444 72 38 2 223 293 347 417 2.69e-12 68.9
Msa0126390 MtrunA17_Chr2g0284321 54.237 59 25 2 237 294 36 93 3.51e-12 65.9
Msa0126390 MtrunA17_Chr1g0150281 40.000 75 41 3 223 294 125 198 9.27e-12 65.9
Msa0126390 MtrunA17_Chr8g0387501 40.404 99 49 3 235 332 128 217 1.23e-11 65.1
Msa0126390 MtrunA17_Chr2g0333851 40.541 74 40 3 223 293 154 226 1.25e-11 65.9
Msa0126390 MtrunA17_Chr4g0060271 41.096 73 41 2 223 294 242 313 1.53e-11 66.6
Msa0126390 MtrunA17_Chr3g0126391 50.685 73 29 3 226 292 120 191 1.53e-11 65.9
Msa0126390 MtrunA17_Chr5g0401821 47.368 76 34 3 223 293 182 256 1.87e-11 64.7
Msa0126390 MtrunA17_Chr7g0270051 51.724 58 26 2 237 293 54 110 2.11e-11 64.3
Msa0126390 MtrunA17_Chr1g0184691 49.231 65 31 2 233 296 290 353 2.22e-11 65.5
Msa0126390 MtrunA17_Chr4g0071521 46.970 66 33 2 233 297 242 306 2.40e-11 64.7
Msa0126390 MtrunA17_Chr7g0216891 43.056 72 39 2 223 293 206 276 3.30e-11 65.5
Msa0126390 MtrunA17_Chr4g0025051 41.558 77 43 2 218 293 317 392 3.77e-11 65.5
Msa0126390 MtrunA17_Chr4g0053281 49.206 63 30 2 233 294 263 324 6.32e-11 63.9
Msa0126390 MtrunA17_Chr7g0248691 41.304 92 44 5 232 322 150 232 7.78e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126390 AT5G64810.1 39.806 103 61 1 191 293 65 166 2.98e-22 94.7
Msa0126390 AT1G64000.1 55.556 72 31 1 222 293 100 170 2.76e-21 92.0
Msa0126390 AT2G38470.1 34.444 180 101 5 166 333 293 467 1.77e-20 94.7
Msa0126390 AT5G41570.1 54.930 71 31 1 223 293 85 154 2.21e-20 89.0
Msa0126390 AT4G26640.7 54.930 71 31 1 223 293 328 397 2.62e-20 94.4
Msa0126390 AT5G07100.2 52.439 82 31 2 223 297 128 208 3.21e-20 89.7
Msa0126390 AT5G07100.4 52.439 82 31 2 223 297 128 208 3.21e-20 89.7
Msa0126390 AT5G07100.5 52.439 82 31 2 223 297 128 208 3.21e-20 89.7
Msa0126390 AT5G07100.3 52.439 82 31 2 223 297 128 208 3.21e-20 89.7
Msa0126390 AT4G26640.1 54.930 71 31 1 223 293 296 365 3.24e-20 94.0
Msa0126390 AT4G26640.2 54.930 71 31 1 223 293 368 437 3.37e-20 94.0
Msa0126390 AT4G26640.5 54.930 71 31 1 223 293 192 261 3.79e-20 92.4
Msa0126390 AT4G26640.6 54.930 71 31 1 223 293 192 261 3.79e-20 92.4
Msa0126390 AT4G26640.4 54.930 71 31 1 223 293 192 261 3.79e-20 92.4
Msa0126390 AT4G26640.3 54.930 71 31 1 223 293 192 261 3.79e-20 92.4
Msa0126390 AT5G07100.1 52.439 82 31 2 223 297 221 301 4.03e-20 91.3
Msa0126390 AT1G13960.1 54.930 71 31 1 223 293 396 465 6.75e-20 92.8
Msa0126390 AT2G03340.1 54.930 71 31 1 223 293 402 471 6.91e-20 92.8
Msa0126390 AT1G13960.2 54.930 71 31 1 223 293 243 312 1.14e-19 90.9
Msa0126390 AT3G01080.2 54.930 71 31 1 223 293 331 400 1.16e-19 92.0
Msa0126390 AT3G01080.1 54.930 71 31 1 223 293 293 362 1.77e-19 90.9
Msa0126390 AT4G26440.1 57.746 71 29 1 223 293 359 428 2.81e-19 91.3
Msa0126390 AT5G56270.1 54.930 71 31 1 223 293 474 543 4.84e-19 90.9
Msa0126390 AT1G55600.1 52.632 76 35 1 218 293 289 363 1.89e-18 88.2
Msa0126390 AT2G04880.2 38.017 121 74 1 173 293 220 339 2.16e-18 88.2
Msa0126390 AT2G04880.1 38.017 121 74 1 173 293 244 363 3.21e-18 87.8
Msa0126390 AT2G44745.1 46.341 82 43 1 223 304 132 212 7.42e-18 82.8
Msa0126390 AT2G30250.1 52.113 71 33 1 223 293 315 384 1.04e-17 85.5
Msa0126390 AT2G46130.1 52.113 71 33 1 223 293 17 86 1.35e-17 79.0
Msa0126390 AT5G26170.1 43.243 74 41 1 223 296 100 172 2.30e-17 80.1
Msa0126390 AT4G39410.1 49.315 73 36 1 223 295 210 281 3.29e-17 82.8
Msa0126390 AT5G49520.1 52.113 71 33 1 223 293 208 277 3.30e-17 84.0
Msa0126390 AT2G47260.1 49.296 71 35 1 223 293 161 230 3.74e-17 83.2
Msa0126390 AT1G29860.1 49.296 71 35 1 223 293 123 192 5.72e-17 81.6
Msa0126390 AT4G18170.1 47.887 71 36 1 223 293 159 228 2.59e-16 80.1
Msa0126390 AT1G69310.4 45.946 74 39 1 223 296 134 206 5.51e-16 79.0
Msa0126390 AT1G69310.2 45.946 74 39 1 223 296 134 206 5.51e-16 79.0
Msa0126390 AT1G69310.1 45.946 74 39 1 223 296 134 206 5.51e-16 79.0
Msa0126390 AT3G62340.1 52.113 71 33 1 223 293 105 174 8.59e-16 78.2
Msa0126390 AT5G13080.1 48.611 72 36 1 222 293 53 123 1.25e-15 74.3
Msa0126390 AT3G01970.1 48.052 77 37 2 223 299 52 125 2.00e-15 73.9
Msa0126390 AT5G46350.1 45.070 71 38 1 223 293 170 239 2.51e-15 77.4
Msa0126390 AT2G21900.1 51.562 64 29 2 231 293 103 165 3.16e-15 74.7
Msa0126390 AT2G46130.2 47.887 71 32 1 223 293 17 82 5.55e-15 71.2
Msa0126390 AT4G31550.2 37.903 124 58 5 191 313 211 316 7.10e-15 76.3
Msa0126390 AT4G30935.1 39.048 105 58 3 199 301 295 395 5.32e-14 74.3
Msa0126390 AT1G69310.3 41.892 74 38 1 223 296 134 202 7.42e-14 72.4
Msa0126390 AT2G37260.2 49.206 63 31 1 231 293 262 323 1.81e-13 72.0
Msa0126390 AT2G37260.1 49.206 63 31 1 231 293 344 405 1.82e-13 72.8
Msa0126390 AT2G37260.3 49.206 63 31 1 231 293 264 325 1.87e-13 72.0
Msa0126390 AT4G31550.1 37.600 125 58 6 191 313 211 317 2.25e-13 71.6
Msa0126390 AT4G04450.2 44.444 72 38 2 223 293 185 255 7.74e-13 70.9
Msa0126390 AT5G52830.1 38.889 108 58 3 222 328 151 251 1.87e-12 68.9
Msa0126390 AT4G23550.1 43.836 73 39 2 222 293 126 197 2.29e-12 68.2
Msa0126390 AT4G04450.1 44.444 72 38 2 223 293 279 349 2.37e-12 69.7
Msa0126390 AT4G01250.1 48.000 75 36 3 220 293 113 185 2.58e-12 68.2
Msa0126390 AT5G15130.2 30.519 154 81 6 165 293 90 242 2.66e-12 69.3
Msa0126390 AT2G25000.2 34.862 109 55 5 202 295 56 163 2.80e-12 66.6
Msa0126390 AT2G25000.4 34.862 109 55 5 202 295 56 163 2.80e-12 66.6
Msa0126390 AT5G15130.1 30.519 154 81 6 165 293 132 284 3.52e-12 68.9
Msa0126390 AT4G24240.1 44.444 81 39 3 223 298 264 343 3.77e-12 68.2
Msa0126390 AT4G22070.4 43.056 72 39 2 223 293 284 354 3.99e-12 68.9
Msa0126390 AT4G22070.3 43.056 72 39 2 223 293 284 354 3.99e-12 68.9
Msa0126390 AT4G22070.2 43.056 72 39 2 223 293 284 354 3.99e-12 68.9
Msa0126390 AT4G22070.1 43.056 72 39 2 223 293 284 354 3.99e-12 68.9
Msa0126390 AT2G25000.3 34.862 109 55 5 202 295 78 185 4.89e-12 66.6
Msa0126390 AT1G29280.1 53.448 58 25 2 237 293 75 131 7.39e-12 66.2
Msa0126390 AT1G62300.1 43.056 72 39 2 223 293 299 369 7.49e-12 68.2
Msa0126390 AT2G25000.1 34.862 109 55 5 202 295 99 206 7.68e-12 66.2
Msa0126390 AT2G23320.1 43.750 80 39 3 220 294 220 298 7.91e-12 66.6
Msa0126390 AT4G01720.1 44.444 72 38 2 223 293 226 296 9.22e-12 67.8
Msa0126390 AT5G43290.1 43.056 72 39 2 223 293 100 170 1.37e-11 65.5
Msa0126390 AT2G24570.1 40.000 105 49 5 191 293 208 300 2.37e-11 65.5
Msa0126390 AT2G34830.1 47.692 65 32 2 230 293 209 272 5.53e-11 65.1
Msa0126390 AT2G34830.2 47.692 65 32 2 230 293 218 281 6.21e-11 64.7
Msa0126390 AT4G31800.2 46.032 63 31 3 235 295 110 171 8.04e-11 62.8
Msa0126390 AT5G28650.1 43.478 69 37 2 233 300 259 326 8.91e-11 63.5

Find 126 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGTTGTTGTTGTTAT+TGG 0.102612 1_3:-55479249 None:intergenic
TGCTCAAGTCTTTCCTTTCA+TGG 0.213204 1_3:+55482480 Msa0126390:CDS
TGAAAGTGATGAAGACATTT+TGG 0.222211 1_3:+55481060 Msa0126390:CDS
ATCAGTTGTACTATCTTCTT+TGG 0.230642 1_3:-55480707 None:intergenic
AATAATTACCTACGATTGTT+AGG 0.259815 1_3:-55481133 None:intergenic
GGAATTGGCCCGTTGATATT+TGG 0.273233 1_3:-55482274 None:intergenic
AATGAATCTCCTCCTTCTTC+TGG 0.277307 1_3:+55479341 Msa0126390:CDS
TATGTAACAAGTACATATTT+TGG 0.310515 1_3:-55481926 None:intergenic
CCAACTTGAGTTGTGGTAAT+AGG 0.312353 1_3:-55482337 None:intergenic
GAAATTGACCCATTGATATT+AGG 0.316173 1_3:-55482361 None:intergenic
TTTCTTCAGGTTGGTGGAAA+TGG 0.328210 1_3:+55482448 Msa0126390:CDS
AAAGGCCGCGTCATGGTATT+AGG 0.337576 1_3:-55482145 None:intergenic
GGGTGCTTCCCCAGCTGATC+AGG 0.355314 1_3:+55482501 Msa0126390:CDS
ACCACCATCTGCATTGTCTA+TGG 0.359566 1_3:+55482060 Msa0126390:CDS
GTCCTTGATCAGGTGGTGTT+GGG 0.367401 1_3:-55480564 None:intergenic
AACTCCTATTGATACAAATC+AGG 0.367991 1_3:+55482246 Msa0126390:CDS
ATACCTTATGGTATGAATTA+CGG 0.368502 1_3:+55482118 Msa0126390:CDS
CAATATGGCTATATACCTTA+TGG 0.368992 1_3:+55482106 Msa0126390:CDS
CATAAGGTATATAGCCATAT+TGG 0.374743 1_3:-55482105 None:intergenic
TTACCCACCATGTTTAATAA+AGG 0.376301 1_3:-55482163 None:intergenic
GCTCAAGTCTTTCCTTTCAT+GGG 0.380582 1_3:+55482481 Msa0126390:CDS
TCGAGAAATATTAATGCATC+TGG 0.384031 1_3:+55482001 Msa0126390:CDS
GGAAATACAGGAAGCGGAAT+TGG 0.386630 1_3:-55482289 None:intergenic
GTTGTTGTTGTTATTGGTGT+TGG 0.388302 1_3:-55479243 None:intergenic
TGCAATTCAGGAAGAGAAAG+AGG 0.396225 1_3:+55480969 Msa0126390:intron
CCATTTCACATTGTACCATA+TGG 0.401565 1_3:+55482418 Msa0126390:CDS
TATGTACTTGTTACATATGA+TGG 0.402941 1_3:+55481932 Msa0126390:CDS
TGTTCACTTATGGGTCTGTA+AGG 0.409849 1_3:-55482199 None:intergenic
TCTGCACCATGTCCTTGATC+AGG 0.410286 1_3:-55480574 None:intergenic
CCTAAATATCATTCAGTGTC+AGG 0.418588 1_3:-55482538 None:intergenic
GGTGGTAATAGTGGTGATAT+CGG 0.419782 1_3:-55482397 None:intergenic
CAAGTTGGACCTAATATCAA+TGG 0.424174 1_3:+55482352 Msa0126390:CDS
CCAACCTGATTTGTATCAAT+AGG 0.427285 1_3:-55482250 None:intergenic
GGTGGTAATGGTGGTGATAT+CGG 0.428089 1_3:-55482310 None:intergenic
TCCGTAGCTTCCTGATCAGC+TGG 0.428219 1_3:-55482511 None:intergenic
GGTCTGTAAGGTTGCATCAT+GGG 0.428794 1_3:-55482187 None:intergenic
AAGTGATTATAAAACCTTTG+TGG 0.432121 1_3:-55480853 None:intergenic
CATCTCCTCTTGTTGCCACA+TGG 0.452151 1_3:-55480489 None:intergenic
GGTGGTGATATCGGAAATAC+AGG 0.454748 1_3:-55482301 None:intergenic
CACACATATGTCTAATATCA+TGG 0.457002 1_3:+55479208 None:intergenic
AGTGGTGATATCGGAAATAC+AGG 0.457187 1_3:-55482388 None:intergenic
ACTGCTTCAGAAAAGTTCAT+TGG 0.480463 1_3:-55480679 None:intergenic
CAACCGTAATTCATACCATA+AGG 0.481218 1_3:-55482121 None:intergenic
TGTCCTTGATCAGGTGGTGT+TGG 0.482577 1_3:-55480565 None:intergenic
ATATAGCCATATTGGTGAAA+AGG 0.483202 1_3:-55482097 None:intergenic
GTAATAGGAAATGGTGGTAA+TGG 0.484085 1_3:-55482322 None:intergenic
CCTATTACCACAACTCAAGT+TGG 0.484916 1_3:+55482337 Msa0126390:CDS
TGAAGAAAATCCCCACCATA+TGG 0.492962 1_3:-55482433 None:intergenic
GGGTCTGTAAGGTTGCATCA+TGG 0.493216 1_3:-55482188 None:intergenic
TTAATATTTCTCGAGTATGT+TGG 0.504174 1_3:-55481992 None:intergenic
GATGATGAAGCAACTGCCAT+TGG 0.509238 1_3:+55480781 Msa0126390:CDS
CTTGCCCCATGACAGATGTC+GGG 0.511254 1_3:+55481017 Msa0126390:CDS
CCGACATCTGTCATGGGGCA+AGG 0.512302 1_3:-55481016 None:intergenic
AGGTTGGACCAAATATCAAC+GGG 0.512849 1_3:+55482266 Msa0126390:CDS
CAAGTATCGAGCACTGGAGT+TGG 0.518387 1_3:+55479275 Msa0126390:CDS
TTCACATTGTACCATATGGT+GGG 0.526608 1_3:+55482422 Msa0126390:CDS
CCATATGGTACAATGTGAAA+TGG 0.527122 1_3:-55482418 None:intergenic
GCTGGGGAAGCACCCATGAA+AGG 0.527399 1_3:-55482493 None:intergenic
CCCAGCTGATCAGGAAGCTA+CGG 0.531217 1_3:+55482510 Msa0126390:CDS
TGAGTTGTGGTAATAGGAAA+TGG 0.532382 1_3:-55482331 None:intergenic
CCTTGCCCCATGACAGATGT+CGG 0.532507 1_3:+55481016 Msa0126390:CDS
ATGTGAAATGGTGGTAATAG+TGG 0.532968 1_3:-55482406 None:intergenic
ATGCTGAAATTCTAAGGGCT+AGG 0.533181 1_3:+55480644 Msa0126390:CDS
TCCCCAACACCACCTGATCA+AGG 0.540123 1_3:+55480562 Msa0126390:CDS
TATGATGATGGTGGTGCTAG+TGG 0.544707 1_3:+55480823 Msa0126390:CDS
AAGTTGGACCTAATATCAAT+GGG 0.549912 1_3:+55482353 Msa0126390:CDS
GAAAATCAAGTATCGAGCAC+TGG 0.550480 1_3:+55479269 Msa0126390:CDS
GATGAAGCAACTGCCATTGG+AGG 0.552119 1_3:+55480784 Msa0126390:CDS
AAATTCTAAGGGCTAGGAAA+GGG 0.557406 1_3:+55480650 Msa0126390:CDS
TCACATTGTACCATATGGTG+GGG 0.559672 1_3:+55482423 Msa0126390:CDS
CCGTAGCTTCCTGATCAGCT+GGG 0.562306 1_3:-55482510 None:intergenic
TCCTTCTTCTGGTTATTCCG+AGG 0.562652 1_3:+55479352 Msa0126390:CDS
ACCTCGGAATAACCAGAAGA+AGG 0.563675 1_3:-55479353 None:intergenic
GATATCGGAAATACAGGAAG+CGG 0.565608 1_3:-55482295 None:intergenic
ATAGGAAATGGTGGTAATGG+TGG 0.566411 1_3:-55482319 None:intergenic
TATTGGTGAAAAGGAGGGAG+AGG 0.567707 1_3:-55482088 None:intergenic
CAGCAACATCATTCCTCCAA+TGG 0.568839 1_3:-55480797 None:intergenic
TTTGTCAATGACAGGTCCGT+GGG 0.568911 1_3:-55481963 None:intergenic
GAAATTCTAAGGGCTAGGAA+AGG 0.571481 1_3:+55480649 Msa0126390:CDS
TTTCACATTGTACCATATGG+TGG 0.572755 1_3:+55482421 Msa0126390:CDS
CCTATTGATACAAATCAGGT+TGG 0.576330 1_3:+55482250 Msa0126390:CDS
GCAATTCAGGAAGAGAAAGA+GGG 0.576835 1_3:+55480970 Msa0126390:intron
TAGCCATATTGGTGAAAAGG+AGG 0.582097 1_3:-55482094 None:intergenic
TCCTTGATCAGGTGGTGTTG+GGG 0.585344 1_3:-55480563 None:intergenic
GTTTAATAAAGGCCGCGTCA+TGG 0.585854 1_3:-55482152 None:intergenic
GCAGTTGCTTCATCATCCGC+AGG 0.586772 1_3:-55480775 None:intergenic
GCAGATGGTGGTGATGGTGG+TGG 0.586837 1_3:-55482049 None:intergenic
GTCTGTAAGGTTGCATCATG+GGG 0.586913 1_3:-55482186 None:intergenic
ATTAGGTCCAACTTGAGTTG+TGG 0.589594 1_3:-55482344 None:intergenic
TGTCTTCATCACTTTCAACT+CGG 0.590497 1_3:-55481054 None:intergenic
CTTATGGTATGAATTACGGT+TGG 0.590836 1_3:+55482122 Msa0126390:CDS
TGATGGTGGTGGCAGCATGT+TGG 0.595809 1_3:-55482038 None:intergenic
CGGCCTTTATTAAACATGGT+GGG 0.600743 1_3:+55482160 Msa0126390:CDS
CAGGTTGGACCAAATATCAA+CGG 0.601960 1_3:+55482265 Msa0126390:CDS
TTTAATGTCACAATTGTGTG+TGG 0.609532 1_3:-55481876 None:intergenic
TACGGATGCAAAGAGATCAA+AGG 0.609552 1_3:+55481106 Msa0126390:CDS
GCACCATGTCCTTGATCAGG+TGG 0.613784 1_3:-55480571 None:intergenic
GACGCGGCCTTTATTAAACA+TGG 0.614916 1_3:+55482156 Msa0126390:CDS
TCTGAAACTTGATCATCAGT+TGG 0.615285 1_3:-55480748 None:intergenic
AAGGAAATCCTAACAATCGT+AGG 0.617006 1_3:+55481125 Msa0126390:CDS
TTTGCCCGACATCTGTCATG+GGG 0.617609 1_3:-55481021 None:intergenic
GACAATGCAGATGGTGGTGA+TGG 0.620508 1_3:-55482055 None:intergenic
ATGTTGCTGCAATATGATGA+TGG 0.628176 1_3:+55480811 Msa0126390:CDS
GCGGCCTTTATTAAACATGG+TGG 0.630164 1_3:+55482159 Msa0126390:CDS
AAAAGAGTATATAAATACCT+CGG 0.632254 1_3:-55479369 None:intergenic
ATTGGTGAAAAGGAGGGAGA+GGG 0.644988 1_3:-55482087 None:intergenic
GATTGCCATGTGGCAACAAG+AGG 0.647237 1_3:+55480484 Msa0126390:CDS
AATGCAGATGGTGGTGATGG+TGG 0.647565 1_3:-55482052 None:intergenic
TTGGTTGCTCTGCTAAACAA+AGG 0.648861 1_3:+55479294 Msa0126390:CDS
CGTAGCTTCCTGATCAGCTG+GGG 0.653265 1_3:-55482509 None:intergenic
AGCCATATTGGTGAAAAGGA+GGG 0.654609 1_3:-55482093 None:intergenic
TATGATGGAAAACATACCCA+CGG 0.656713 1_3:+55481947 Msa0126390:CDS
TGAACCATAGACAATGCAGA+TGG 0.660865 1_3:-55482064 None:intergenic
GCAAAATGATGCAAATGTAG+TGG 0.669148 1_3:+55480615 Msa0126390:CDS
CTAGTGGATCTTGTCCACAA+AGG 0.681150 1_3:+55480839 Msa0126390:CDS
GGGGATGAGAAATTCAACAC+TGG 0.684419 1_3:-55480544 None:intergenic
ACATCTGTCATGGGGCAAGG+TGG 0.686804 1_3:-55481013 None:intergenic
GTTGTGGTAATAGGAAATGG+TGG 0.688257 1_3:-55482328 None:intergenic
TCGGAATAACCAGAAGAAGG+AGG 0.688798 1_3:-55479350 None:intergenic
TTCTGCTGATGATTGCCATG+TGG 0.692089 1_3:+55480474 Msa0126390:CDS
TATGGTACAATGTGAAATGG+TGG 0.694153 1_3:-55482415 None:intergenic
ACCATAGACAATGCAGATGG+TGG 0.695551 1_3:-55482061 None:intergenic
ACACCACCTGATCAAGGACA+TGG 0.702867 1_3:+55480568 Msa0126390:CDS
TTGCTGCAATATGATGATGG+TGG 0.726113 1_3:+55480814 Msa0126390:CDS
TCAAGTTTCAGATACACCTG+CGG 0.763156 1_3:+55480759 Msa0126390:CDS
GTTGGCCTAATACCATGACG+CGG 0.807585 1_3:+55482140 Msa0126390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATCAAAAAATAAAAA+AGG - chr1_3:55479607-55479626 None:intergenic 10.0%
!! TGACATTATTTAAAAAAAAA+GGG - chr1_3:55479915-55479934 None:intergenic 10.0%
!! GTGACATTATTTAAAAAAAA+AGG - chr1_3:55479916-55479935 None:intergenic 15.0%
!!! TTTTGTTTTTATAGTTTCAT+AGG + chr1_3:55480272-55480291 Msa0126390:intron 15.0%
!! TTGTAAAAATATCAAAAACA+AGG - chr1_3:55481438-55481457 None:intergenic 15.0%
!!! CTTTATCATTTTATTTTAAG+CGG + chr1_3:55481665-55481684 Msa0126390:intron 15.0%
!! TACTAATACATTTATGTAAA+TGG - chr1_3:55481769-55481788 None:intergenic 15.0%
!! TCACACAATATTAAATAATT+AGG - chr1_3:55481832-55481851 None:intergenic 15.0%
!!! AAAAGAGTATATAAATACCT+CGG - chr1_3:55479372-55479391 None:intergenic 20.0%
!!! AATGGCTTTTCAATTAAATT+CGG - chr1_3:55479859-55479878 None:intergenic 20.0%
!! TCTTCATTCAAGATTTAAAA+TGG - chr1_3:55479877-55479896 None:intergenic 20.0%
!! ATATTCCTAATGAGAAATAA+TGG - chr1_3:55480067-55480086 None:intergenic 20.0%
!! TACATGTTAGATTGAATTAA+AGG - chr1_3:55480166-55480185 None:intergenic 20.0%
!! ATAAATAAATCATTCCATGT+TGG - chr1_3:55480326-55480345 None:intergenic 20.0%
!! GTAATTGAATCAAATTCATT+AGG + chr1_3:55480450-55480469 Msa0126390:intron 20.0%
!! ACATTGTTGCTAATAAATAA+AGG + chr1_3:55480921-55480940 Msa0126390:intron 20.0%
!! AACAAGGAAAAACATATATA+TGG - chr1_3:55481422-55481441 None:intergenic 20.0%
!!! TTTTACGATAAATCACTTAT+CGG - chr1_3:55481568-55481587 None:intergenic 20.0%
!! CAAATTCAATATCAAATTCT+AGG - chr1_3:55481595-55481614 None:intergenic 20.0%
!! AGAATTTGATATTGAATTTG+TGG + chr1_3:55481595-55481614 Msa0126390:intron 20.0%
!! TTTAATATTGTGTGAATTGT+AGG + chr1_3:55481837-55481856 Msa0126390:intron 20.0%
!! TTAATATTGTGTGAATTGTA+GGG + chr1_3:55481838-55481857 Msa0126390:intron 20.0%
!!! TATGTAACAAGTACATATTT+TGG - chr1_3:55481929-55481948 None:intergenic 20.0%
!!! AGAAAATTTTGTTCACTTAT+GGG - chr1_3:55482211-55482230 None:intergenic 20.0%
!!! TAGAAAATTTTGTTCACTTA+TGG - chr1_3:55482212-55482231 None:intergenic 20.0%
!! TTCATTGTTGTTGTTGTTAT+TGG - chr1_3:55479252-55479271 None:intergenic 25.0%
! GAATTTGGATTCGTTTATAT+TGG - chr1_3:55479988-55480007 None:intergenic 25.0%
! AAGTTGTATTAGTGCTAAAA+TGG - chr1_3:55480099-55480118 None:intergenic 25.0%
! ATTGAATTAAAGGTCTGATT+AGG - chr1_3:55480156-55480175 None:intergenic 25.0%
! TGAAAAATGCTGAAATTCTA+AGG + chr1_3:55480638-55480657 Msa0126390:CDS 25.0%
! GAAAAATGCTGAAATTCTAA+GGG + chr1_3:55480639-55480658 Msa0126390:CDS 25.0%
! AAGTGATTATAAAACCTTTG+TGG - chr1_3:55480856-55480875 None:intergenic 25.0%
!!! TTTTGGATGATGGTTATTTT+TGG + chr1_3:55481077-55481096 Msa0126390:CDS 25.0%
! AATAATTACCTACGATTGTT+AGG - chr1_3:55481136-55481155 None:intergenic 25.0%
! TGCATTAACACATATAAAAG+AGG - chr1_3:55481161-55481180 None:intergenic 25.0%
! AATGACATAATGATCATTGA+CGG + chr1_3:55481376-55481395 Msa0126390:intron 25.0%
! AATCTAACAATGATTGATGT+TGG - chr1_3:55481505-55481524 None:intergenic 25.0%
!!! TAGAGATGATTTTCAAGTAT+TGG + chr1_3:55481525-55481544 Msa0126390:intron 25.0%
!!! AGAGATGATTTTCAAGTATT+GGG + chr1_3:55481526-55481545 Msa0126390:intron 25.0%
! TAATATTGTGTGAATTGTAG+GGG + chr1_3:55481839-55481858 Msa0126390:intron 25.0%
! TTGTGACATTAAAAAACAAG+TGG + chr1_3:55481886-55481905 Msa0126390:CDS 25.0%
! ACATTAAAAAACAAGTGGAA+AGG + chr1_3:55481891-55481910 Msa0126390:CDS 25.0%
! CATTAAAAAACAAGTGGAAA+GGG + chr1_3:55481892-55481911 Msa0126390:CDS 25.0%
!! TATGTACTTGTTACATATGA+TGG + chr1_3:55481932-55481951 Msa0126390:CDS 25.0%
! TTAATATTTCTCGAGTATGT+TGG - chr1_3:55481995-55482014 None:intergenic 25.0%
! ATACCTTATGGTATGAATTA+CGG + chr1_3:55482118-55482137 Msa0126390:CDS 25.0%
GGTGAAAAATGATGTGAATT+TGG - chr1_3:55480003-55480022 None:intergenic 30.0%
! ACTTTTAATAACCACACAAG+CGG - chr1_3:55480029-55480048 None:intergenic 30.0%
! ATGCACCATTATTTCTCATT+AGG + chr1_3:55480059-55480078 Msa0126390:intron 30.0%
!! CAAATAGTTTTACACCAACA+TGG + chr1_3:55480309-55480328 Msa0126390:intron 30.0%
ATCAGTTGTACTATCTTCTT+TGG - chr1_3:55480710-55480729 None:intergenic 30.0%
!! GCTCAATTATTTTGCAATTC+AGG + chr1_3:55480957-55480976 Msa0126390:intron 30.0%
! TGAAAGTGATGAAGACATTT+TGG + chr1_3:55481060-55481079 Msa0126390:CDS 30.0%
GTCAATGATCATTATGTCAT+TGG - chr1_3:55481377-55481396 None:intergenic 30.0%
AATATTGTGTGAATTGTAGG+GGG + chr1_3:55481840-55481859 Msa0126390:intron 30.0%
TTTAATGTCACAATTGTGTG+TGG - chr1_3:55481879-55481898 None:intergenic 30.0%
TCGAGAAATATTAATGCATC+TGG + chr1_3:55482001-55482020 Msa0126390:CDS 30.0%
ATATAGCCATATTGGTGAAA+AGG - chr1_3:55482100-55482119 None:intergenic 30.0%
CATAAGGTATATAGCCATAT+TGG - chr1_3:55482108-55482127 None:intergenic 30.0%
CAATATGGCTATATACCTTA+TGG + chr1_3:55482106-55482125 Msa0126390:CDS 30.0%
TTACCCACCATGTTTAATAA+AGG - chr1_3:55482166-55482185 None:intergenic 30.0%
AACTCCTATTGATACAAATC+AGG + chr1_3:55482246-55482265 Msa0126390:CDS 30.0%
AAGTTGGACCTAATATCAAT+GGG + chr1_3:55482353-55482372 Msa0126390:CDS 30.0%
GAAATTGACCCATTGATATT+AGG - chr1_3:55482364-55482383 None:intergenic 30.0%
! GTTGTTGTTGTTATTGGTGT+TGG - chr1_3:55479246-55479265 None:intergenic 35.0%
! CATTTGCATCATTTTGCACA+TGG - chr1_3:55480612-55480631 None:intergenic 35.0%
GCAAAATGATGCAAATGTAG+TGG + chr1_3:55480615-55480634 Msa0126390:CDS 35.0%
! AAATTCTAAGGGCTAGGAAA+GGG + chr1_3:55480650-55480669 Msa0126390:CDS 35.0%
ACTGCTTCAGAAAAGTTCAT+TGG - chr1_3:55480682-55480701 None:intergenic 35.0%
! TCTGAAACTTGATCATCAGT+TGG - chr1_3:55480751-55480770 None:intergenic 35.0%
ATGTTGCTGCAATATGATGA+TGG + chr1_3:55480811-55480830 Msa0126390:CDS 35.0%
TGTCTTCATCACTTTCAACT+CGG - chr1_3:55481057-55481076 None:intergenic 35.0%
! GATGAAGACATTTTGGATGA+TGG + chr1_3:55481067-55481086 Msa0126390:CDS 35.0%
AAGGAAATCCTAACAATCGT+AGG + chr1_3:55481125-55481144 Msa0126390:CDS 35.0%
!! TTCTCTTTTTCATTCACTCC+TGG + chr1_3:55481204-55481223 Msa0126390:intron 35.0%
CTCTCTCTATATATACACCA+AGG - chr1_3:55481230-55481249 None:intergenic 35.0%
! CTTGGTGTATATATAGAGAG+AGG + chr1_3:55481228-55481247 Msa0126390:intron 35.0%
!! TTATGTCATTGGCTTAGTTG+TGG - chr1_3:55481366-55481385 None:intergenic 35.0%
TTGACGGTTTGATGAAAACA+TGG + chr1_3:55481392-55481411 Msa0126390:intron 35.0%
TGACGGTTTGATGAAAACAT+GGG + chr1_3:55481393-55481412 Msa0126390:intron 35.0%
!! TGATTGATGTTGGTTCAACA+TGG - chr1_3:55481495-55481514 None:intergenic 35.0%
! TATGATGGAAAACATACCCA+CGG + chr1_3:55481947-55481966 Msa0126390:CDS 35.0%
!!! GGTCTTTTTTTGTCAATGAC+AGG - chr1_3:55481974-55481993 None:intergenic 35.0%
CAACCGTAATTCATACCATA+AGG - chr1_3:55482124-55482143 None:intergenic 35.0%
CTTATGGTATGAATTACGGT+TGG + chr1_3:55482122-55482141 Msa0126390:CDS 35.0%
! CCAACCTGATTTGTATCAAT+AGG - chr1_3:55482253-55482272 None:intergenic 35.0%
CCTATTGATACAAATCAGGT+TGG + chr1_3:55482250-55482269 Msa0126390:CDS 35.0%
GTAATAGGAAATGGTGGTAA+TGG - chr1_3:55482325-55482344 None:intergenic 35.0%
TGAGTTGTGGTAATAGGAAA+TGG - chr1_3:55482334-55482353 None:intergenic 35.0%
! CAAGTTGGACCTAATATCAA+TGG + chr1_3:55482352-55482371 Msa0126390:CDS 35.0%
ATGTGAAATGGTGGTAATAG+TGG - chr1_3:55482409-55482428 None:intergenic 35.0%
TATGGTACAATGTGAAATGG+TGG - chr1_3:55482418-55482437 None:intergenic 35.0%
CCATATGGTACAATGTGAAA+TGG - chr1_3:55482421-55482440 None:intergenic 35.0%
CCATTTCACATTGTACCATA+TGG + chr1_3:55482418-55482437 Msa0126390:CDS 35.0%
TTTCACATTGTACCATATGG+TGG + chr1_3:55482421-55482440 Msa0126390:CDS 35.0%
TTCACATTGTACCATATGGT+GGG + chr1_3:55482422-55482441 Msa0126390:CDS 35.0%
!! GAAAATCAAGTATCGAGCAC+TGG + chr1_3:55479269-55479288 Msa0126390:CDS 40.0%
TTGGTTGCTCTGCTAAACAA+AGG + chr1_3:55479294-55479313 Msa0126390:CDS 40.0%
AATGAATCTCCTCCTTCTTC+TGG + chr1_3:55479341-55479360 Msa0126390:CDS 40.0%
AAATGAACCAGTAGCAACCA+CGG - chr1_3:55479783-55479802 None:intergenic 40.0%
! ATGCTGAAATTCTAAGGGCT+AGG + chr1_3:55480644-55480663 Msa0126390:CDS 40.0%
! GAAATTCTAAGGGCTAGGAA+AGG + chr1_3:55480649-55480668 Msa0126390:CDS 40.0%
TCAAGTTTCAGATACACCTG+CGG + chr1_3:55480759-55480778 Msa0126390:CDS 40.0%
!! TTGCTGCAATATGATGATGG+TGG + chr1_3:55480814-55480833 Msa0126390:CDS 40.0%
TGCAATTCAGGAAGAGAAAG+AGG + chr1_3:55480969-55480988 Msa0126390:intron 40.0%
GCAATTCAGGAAGAGAAAGA+GGG + chr1_3:55480970-55480989 Msa0126390:intron 40.0%
!!! GGTTATTTTTGGCGCAAGTA+CGG + chr1_3:55481088-55481107 Msa0126390:CDS 40.0%
TACGGATGCAAAGAGATCAA+AGG + chr1_3:55481106-55481125 Msa0126390:CDS 40.0%
TCTATATATACACCAAGGCC+AGG - chr1_3:55481225-55481244 None:intergenic 40.0%
GGTGTATATATAGAGAGAGG+AGG + chr1_3:55481231-55481250 Msa0126390:intron 40.0%
TGAACCATAGACAATGCAGA+TGG - chr1_3:55482067-55482086 None:intergenic 40.0%
AGCCATATTGGTGAAAAGGA+GGG - chr1_3:55482096-55482115 None:intergenic 40.0%
TAGCCATATTGGTGAAAAGG+AGG - chr1_3:55482097-55482116 None:intergenic 40.0%
CGGCCTTTATTAAACATGGT+GGG + chr1_3:55482160-55482179 Msa0126390:CDS 40.0%
TGTTCACTTATGGGTCTGTA+AGG - chr1_3:55482202-55482221 None:intergenic 40.0%
! CAGGTTGGACCAAATATCAA+CGG + chr1_3:55482265-55482284 Msa0126390:CDS 40.0%
AGGTTGGACCAAATATCAAC+GGG + chr1_3:55482266-55482285 Msa0126390:CDS 40.0%
GATATCGGAAATACAGGAAG+CGG - chr1_3:55482298-55482317 None:intergenic 40.0%
!! ATAGGAAATGGTGGTAATGG+TGG - chr1_3:55482322-55482341 None:intergenic 40.0%
GTTGTGGTAATAGGAAATGG+TGG - chr1_3:55482331-55482350 None:intergenic 40.0%
! CCAACTTGAGTTGTGGTAAT+AGG - chr1_3:55482340-55482359 None:intergenic 40.0%
CCTATTACCACAACTCAAGT+TGG + chr1_3:55482337-55482356 Msa0126390:CDS 40.0%
! ATTAGGTCCAACTTGAGTTG+TGG - chr1_3:55482347-55482366 None:intergenic 40.0%
AGTGGTGATATCGGAAATAC+AGG - chr1_3:55482391-55482410 None:intergenic 40.0%
GGTGGTAATAGTGGTGATAT+CGG - chr1_3:55482400-55482419 None:intergenic 40.0%
TCACATTGTACCATATGGTG+GGG + chr1_3:55482423-55482442 Msa0126390:CDS 40.0%
TGAAGAAAATCCCCACCATA+TGG - chr1_3:55482436-55482455 None:intergenic 40.0%
!! ATATGGTGGGGATTTTCTTC+AGG + chr1_3:55482435-55482454 Msa0126390:CDS 40.0%
!! TTTCTTCAGGTTGGTGGAAA+TGG + chr1_3:55482448-55482467 Msa0126390:CDS 40.0%
TGCTCAAGTCTTTCCTTTCA+TGG + chr1_3:55482480-55482499 Msa0126390:CDS 40.0%
GCTCAAGTCTTTCCTTTCAT+GGG + chr1_3:55482481-55482500 Msa0126390:CDS 40.0%
TCGGAATAACCAGAAGAAGG+AGG - chr1_3:55479353-55479372 None:intergenic 45.0%
! TCCTTCTTCTGGTTATTCCG+AGG + chr1_3:55479352-55479371 Msa0126390:CDS 45.0%
ACCTCGGAATAACCAGAAGA+AGG - chr1_3:55479356-55479375 None:intergenic 45.0%
TAATAACCACACAAGCGGAG+AGG - chr1_3:55480024-55480043 None:intergenic 45.0%
TTCTGCTGATGATTGCCATG+TGG + chr1_3:55480474-55480493 Msa0126390:CDS 45.0%
GGGGATGAGAAATTCAACAC+TGG - chr1_3:55480547-55480566 None:intergenic 45.0%
GATGATGAAGCAACTGCCAT+TGG + chr1_3:55480781-55480800 Msa0126390:CDS 45.0%
CAGCAACATCATTCCTCCAA+TGG - chr1_3:55480800-55480819 None:intergenic 45.0%
!! TATGATGATGGTGGTGCTAG+TGG + chr1_3:55480823-55480842 Msa0126390:CDS 45.0%
! CTAGTGGATCTTGTCCACAA+AGG + chr1_3:55480839-55480858 Msa0126390:CDS 45.0%
! TTTTGCCCGACATCTGTCAT+GGG - chr1_3:55481025-55481044 None:intergenic 45.0%
! TTTTTGCCCGACATCTGTCA+TGG - chr1_3:55481026-55481045 None:intergenic 45.0%
! TTTTCATTCACTCCTGGCCT+TGG + chr1_3:55481210-55481229 Msa0126390:intron 45.0%
ACAGCAGTGTGCATCATCAT+TGG - chr1_3:55481308-55481327 None:intergenic 45.0%
TTTGTCAATGACAGGTCCGT+GGG - chr1_3:55481966-55481985 None:intergenic 45.0%
! TTTTGTCAATGACAGGTCCG+TGG - chr1_3:55481967-55481986 None:intergenic 45.0%
ACCACCATCTGCATTGTCTA+TGG + chr1_3:55482060-55482079 Msa0126390:CDS 45.0%
ACCATAGACAATGCAGATGG+TGG - chr1_3:55482064-55482083 None:intergenic 45.0%
ATTGGTGAAAAGGAGGGAGA+GGG - chr1_3:55482090-55482109 None:intergenic 45.0%
TATTGGTGAAAAGGAGGGAG+AGG - chr1_3:55482091-55482110 None:intergenic 45.0%
! CTCCCTCCTTTTCACCAATA+TGG + chr1_3:55482091-55482110 Msa0126390:CDS 45.0%
GTTTAATAAAGGCCGCGTCA+TGG - chr1_3:55482155-55482174 None:intergenic 45.0%
GACGCGGCCTTTATTAAACA+TGG + chr1_3:55482156-55482175 Msa0126390:CDS 45.0%
GCGGCCTTTATTAAACATGG+TGG + chr1_3:55482159-55482178 Msa0126390:CDS 45.0%
GTCTGTAAGGTTGCATCATG+GGG - chr1_3:55482189-55482208 None:intergenic 45.0%
GGTCTGTAAGGTTGCATCAT+GGG - chr1_3:55482190-55482209 None:intergenic 45.0%
GGAATTGGCCCGTTGATATT+TGG - chr1_3:55482277-55482296 None:intergenic 45.0%
GGAAATACAGGAAGCGGAAT+TGG - chr1_3:55482292-55482311 None:intergenic 45.0%
GGTGGTGATATCGGAAATAC+AGG - chr1_3:55482304-55482323 None:intergenic 45.0%
!! GGTGGTAATGGTGGTGATAT+CGG - chr1_3:55482313-55482332 None:intergenic 45.0%
!! CAAGTATCGAGCACTGGAGT+TGG + chr1_3:55479275-55479294 Msa0126390:CDS 50.0%
GTCGTGTGTGCATGCATACA+CGG + chr1_3:55479757-55479776 Msa0126390:intron 50.0%
! TTTTCACCTCTCCGCTTGTG+TGG + chr1_3:55480015-55480034 Msa0126390:intron 50.0%
GATTGCCATGTGGCAACAAG+AGG + chr1_3:55480484-55480503 Msa0126390:CDS 50.0%
CATCTCCTCTTGTTGCCACA+TGG - chr1_3:55480492-55480511 None:intergenic 50.0%
! TCCTTGATCAGGTGGTGTTG+GGG - chr1_3:55480566-55480585 None:intergenic 50.0%
GTCCTTGATCAGGTGGTGTT+GGG - chr1_3:55480567-55480586 None:intergenic 50.0%
TGTCCTTGATCAGGTGGTGT+TGG - chr1_3:55480568-55480587 None:intergenic 50.0%
ACACCACCTGATCAAGGACA+TGG + chr1_3:55480568-55480587 Msa0126390:CDS 50.0%
TCTGCACCATGTCCTTGATC+AGG - chr1_3:55480577-55480596 None:intergenic 50.0%
GATGAAGCAACTGCCATTGG+AGG + chr1_3:55480784-55480803 Msa0126390:CDS 50.0%
TTTGCCCGACATCTGTCATG+GGG - chr1_3:55481024-55481043 None:intergenic 50.0%
!! AATGCAGATGGTGGTGATGG+TGG - chr1_3:55482055-55482074 None:intergenic 50.0%
! GACAATGCAGATGGTGGTGA+TGG - chr1_3:55482058-55482077 None:intergenic 50.0%
! GTTGGCCTAATACCATGACG+CGG + chr1_3:55482140-55482159 Msa0126390:CDS 50.0%
AAAGGCCGCGTCATGGTATT+AGG - chr1_3:55482148-55482167 None:intergenic 50.0%
GGGTCTGTAAGGTTGCATCA+TGG - chr1_3:55482191-55482210 None:intergenic 50.0%
! GGTGGGGATTTTCTTCAGGT+TGG + chr1_3:55482439-55482458 Msa0126390:CDS 50.0%
!!! GGGGATTTTCTTCAGGTTGG+TGG + chr1_3:55482442-55482461 Msa0126390:CDS 50.0%
TCCCCAACACCACCTGATCA+AGG + chr1_3:55480562-55480581 Msa0126390:CDS 55.0%
GCACCATGTCCTTGATCAGG+TGG - chr1_3:55480574-55480593 None:intergenic 55.0%
GCAGTTGCTTCATCATCCGC+AGG - chr1_3:55480778-55480797 None:intergenic 55.0%
ACATCTGTCATGGGGCAAGG+TGG - chr1_3:55481016-55481035 None:intergenic 55.0%
CCTTGCCCCATGACAGATGT+CGG + chr1_3:55481016-55481035 Msa0126390:CDS 55.0%
CTTGCCCCATGACAGATGTC+GGG + chr1_3:55481017-55481036 Msa0126390:CDS 55.0%
!! TGATGGTGGTGGCAGCATGT+TGG - chr1_3:55482041-55482060 None:intergenic 55.0%
CGTAGCTTCCTGATCAGCTG+GGG - chr1_3:55482512-55482531 None:intergenic 55.0%
CCGTAGCTTCCTGATCAGCT+GGG - chr1_3:55482513-55482532 None:intergenic 55.0%
CCCAGCTGATCAGGAAGCTA+CGG + chr1_3:55482510-55482529 Msa0126390:CDS 55.0%
TCCGTAGCTTCCTGATCAGC+TGG - chr1_3:55482514-55482533 None:intergenic 55.0%
TGTGCATGCATACACGGCCG+TGG + chr1_3:55479763-55479782 Msa0126390:intron 60.0%
TACACGGCCGTGGTTGCTAC+TGG + chr1_3:55479773-55479792 Msa0126390:intron 60.0%
CCGACATCTGTCATGGGGCA+AGG - chr1_3:55481019-55481038 None:intergenic 60.0%
!! GCAGATGGTGGTGATGGTGG+TGG - chr1_3:55482052-55482071 None:intergenic 60.0%
!! GCTGGGGAAGCACCCATGAA+AGG - chr1_3:55482496-55482515 None:intergenic 60.0%
GGGTGCTTCCCCAGCTGATC+AGG + chr1_3:55482501-55482520 Msa0126390:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55479215 55482552 55479215 ID=Msa0126390;Name=Msa0126390
chr1_3 mRNA 55479215 55482552 55479215 ID=Msa0126390-mRNA-1;Parent=Msa0126390;Name=Msa0126390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0.66|0.75|4|0|487
chr1_3 exon 55479215 55479427 55479215 ID=Msa0126390-mRNA-1:exon:17235;Parent=Msa0126390-mRNA-1
chr1_3 exon 55480472 55480860 55480472 ID=Msa0126390-mRNA-1:exon:17236;Parent=Msa0126390-mRNA-1
chr1_3 exon 55480979 55481146 55480979 ID=Msa0126390-mRNA-1:exon:17237;Parent=Msa0126390-mRNA-1
chr1_3 exon 55481859 55482552 55481859 ID=Msa0126390-mRNA-1:exon:17238;Parent=Msa0126390-mRNA-1
chr1_3 CDS 55479215 55479427 55479215 ID=Msa0126390-mRNA-1:cds;Parent=Msa0126390-mRNA-1
chr1_3 CDS 55480472 55480860 55480472 ID=Msa0126390-mRNA-1:cds;Parent=Msa0126390-mRNA-1
chr1_3 CDS 55480979 55481146 55480979 ID=Msa0126390-mRNA-1:cds;Parent=Msa0126390-mRNA-1
chr1_3 CDS 55481859 55482552 55481859 ID=Msa0126390-mRNA-1:cds;Parent=Msa0126390-mRNA-1
Gene Sequence

>Msa0126390

ATGTCTAATATCATGGAAAACAACAACACCAACACCAATAACAACAACAACAATGAAAATCAAGTATCGAGCACTGGAGTTGGTTGCTCTGCTAAACAAAGGAAGAGAAGAGATTTGATCGATTTAAATGAATCTCCTCCTTCTTCTGGTTATTCCGAGGTATTTATATACTCTTTTTACGCTAATACATGTAAAGATGATGATCAAGATCATGCTTCTGCTGATGATTGCCATGTGGCAACAAGAGGAGATGCAAAACTTCAAGCTGAAACTGAAGTTCAACAACCAGTGTTGAATTTCTCATCCCCAACACCACCTGATCAAGGACATGGTGCAGAAGAAGAACAAGACCATGTGCAAAATGATGCAAATGTAGTGGTGAAAAATGCTGAAATTCTAAGGGCTAGGAAAGGGAAGATGCCAATGAACTTTTCTGAAGCAGTGCATGCCAAAGAAGATAGTACAACTGATGATAAAGAAACAAATGTACCAACTGATGATCAAGTTTCAGATACACCTGCGGATGATGAAGCAACTGCCATTGGAGGAATGATGTTGCTGCAATATGATGATGGTGGTGCTAGTGGATCTTGTCCACAAAGGAAGAGAAAGAGGGACTTCTCTGAATACTATAAACCACCTTGCCCCATGACAGATGTCGGGCAAAAAATAGTGATCCGAGTTGAAAGTGATGAAGACATTTTGGATGATGGTTATTTTTGGCGCAAGTACGGATGCAAAGAGATCAAAGGAAATCCTAACAATCGTAGGGGGTACTACAGATGCGCCACACACAATTGTGACATTAAAAAACAAGTGGAAAGGGATGCTAAAGATCCAAAATATGTACTTGTTACATATGATGGAAAACATACCCACGGACCTGTCATTGACAAAAAAAGACCAACATACTCGAGAAATATTAATGCATCTGGAGTTCGTAGAAATGCCAACATGCTGCCACCACCATCACCACCATCTGCATTGTCTATGGTTCACCCTCTCCCTCCTTTTCACCAATATGGCTATATACCTTATGGTATGAATTACGGTTGGCCTAATACCATGACGCGGCCTTTATTAAACATGGTGGGTAACCCCATGATGCAACCTTACAGACCCATAAGTGAACAAAATTTTCTAGAACATCGTGCTTCAACTCCTATTGATACAAATCAGGTTGGACCAAATATCAACGGGCCAATTCCGCTTCCTGTATTTCCGATATCACCACCATTACCACCATTTCCTATTACCACAACTCAAGTTGGACCTAATATCAATGGGTCAATTTCACTTCCTGTATTTCCGATATCACCACTATTACCACCATTTCACATTGTACCATATGGTGGGGATTTTCTTCAGGTTGGTGGAAATGGTATTGTTGCTGCTCAAGTCTTTCCTTTCATGGGTGCTTCCCCAGCTGATCAGGAAGCTACGGATGTTCCTGACACTGAATGA
Protein sequence

>Msa0126390

MSNIMENNNTNTNNNNNNENQVSSTGVGCSAKQRKRRDLIDLNESPPSSGYSEVFIYSFYANTCKDDDQDHASADDCHVATRGDAKLQAETEVQQPVLNFSSPTPPDQGHGAEEEQDHVQNDANVVVKNAEILRARKGKMPMNFSEAVHAKEDSTTDDKETNVPTDDQVSDTPADDEATAIGGMMLLQYDDGGASGSCPQRKRKRDFSEYYKPPCPMTDVGQKIVIRVESDEDILDDGYFWRKYGCKEIKGNPNNRRGYYRCATHNCDIKKQVERDAKDPKYVLVTYDGKHTHGPVIDKKRPTYSRNINASGVRRNANMLPPPSPPSALSMVHPLPPFHQYGYIPYGMNYGWPNTMTRPLLNMVGNPMMQPYRPISEQNFLEHRASTPIDTNQVGPNINGPIPLPVFPISPPLPPFPITTTQVGPNINGSISLPVFPISPLLPPFHIVPYGGDFLQVGGNGIVAAQVFPFMGASPADQEATDVPDTE*