Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126400 | XP_004495537.1 | 44.638 | 345 | 77 | 9 | 10 | 240 | 19 | 363 | 9.03e-74 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126400 | sp|Q9SWF9|ZFNL_PEA | 36.224 | 392 | 86 | 11 | 9 | 240 | 9 | 396 | 2.05e-60 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126400 | A0A1S2XWB5 | 44.638 | 345 | 77 | 9 | 10 | 240 | 19 | 363 | 4.31e-74 | 240 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0126400 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126400 | MtrunA17_Chr7g0249221 | 51.515 | 132 | 40 | 3 | 131 | 240 | 268 | 397 | 1.32e-33 | 126 |
| Msa0126400 | MtrunA17_Chr7g0249221 | 37.888 | 161 | 75 | 5 | 2 | 160 | 3 | 140 | 1.66e-24 | 101 |
| Msa0126400 | MtrunA17_Chr4g0058011 | 36.098 | 205 | 94 | 8 | 32 | 199 | 329 | 533 | 9.99e-24 | 100 |
| Msa0126400 | MtrunA17_Chr3g0116431 | 32.075 | 212 | 101 | 7 | 32 | 202 | 269 | 478 | 2.52e-21 | 92.8 |
| Msa0126400 | MtrunA17_Chr5g0438891 | 28.629 | 248 | 100 | 7 | 33 | 221 | 129 | 358 | 1.77e-19 | 87.0 |
| Msa0126400 | MtrunA17_Chr8g0356241 | 30.769 | 221 | 101 | 9 | 1 | 199 | 284 | 474 | 7.73e-19 | 85.9 |
| Msa0126400 | MtrunA17_Chr8g0356241 | 28.646 | 192 | 55 | 6 | 27 | 202 | 138 | 263 | 2.36e-17 | 81.3 |
| Msa0126400 | MtrunA17_Chr1g0195891 | 31.447 | 159 | 81 | 4 | 4 | 159 | 25 | 158 | 7.22e-16 | 76.3 |
| Msa0126400 | MtrunA17_Chr1g0195891 | 26.160 | 237 | 108 | 10 | 27 | 199 | 91 | 324 | 1.78e-11 | 63.5 |
| Msa0126400 | MtrunA17_Chr2g0286151 | 28.028 | 289 | 119 | 13 | 27 | 237 | 137 | 414 | 1.79e-15 | 75.9 |
| Msa0126400 | MtrunA17_Chr2g0286151 | 34.286 | 140 | 66 | 4 | 25 | 160 | 42 | 159 | 2.39e-15 | 75.5 |
| Msa0126400 | MtrunA17_Chr4g0066941 | 35.036 | 137 | 67 | 4 | 25 | 160 | 41 | 156 | 3.36e-14 | 72.0 |
| Msa0126400 | MtrunA17_Chr4g0066941 | 30.247 | 162 | 89 | 4 | 54 | 201 | 256 | 407 | 2.29e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126400 | AT5G16540.2 | 34.821 | 336 | 113 | 12 | 10 | 242 | 21 | 353 | 2.02e-43 | 151 |
| Msa0126400 | AT5G16540.1 | 34.111 | 343 | 113 | 12 | 10 | 242 | 21 | 360 | 1.13e-42 | 149 |
| Msa0126400 | AT5G16540.3 | 34.211 | 342 | 112 | 12 | 11 | 242 | 1 | 339 | 1.35e-42 | 149 |
| Msa0126400 | AT3G02830.1 | 29.855 | 345 | 105 | 8 | 10 | 217 | 20 | 364 | 4.30e-38 | 138 |
| Msa0126400 | AT3G02830.2 | 29.360 | 344 | 106 | 8 | 11 | 217 | 1 | 344 | 4.80e-37 | 135 |
| Msa0126400 | AT2G47850.4 | 30.204 | 245 | 107 | 7 | 26 | 210 | 10 | 250 | 1.48e-26 | 106 |
| Msa0126400 | AT2G47850.1 | 29.388 | 245 | 109 | 6 | 26 | 210 | 132 | 372 | 1.43e-25 | 105 |
| Msa0126400 | AT2G47850.1 | 32.911 | 158 | 70 | 7 | 7 | 159 | 28 | 154 | 3.17e-15 | 75.5 |
| Msa0126400 | AT2G47850.3 | 29.388 | 245 | 109 | 6 | 26 | 210 | 132 | 372 | 1.43e-25 | 105 |
| Msa0126400 | AT2G47850.3 | 32.911 | 158 | 70 | 7 | 7 | 159 | 28 | 154 | 3.17e-15 | 75.5 |
| Msa0126400 | AT5G16540.4 | 36.364 | 165 | 66 | 4 | 16 | 161 | 98 | 242 | 1.65e-25 | 102 |
| Msa0126400 | AT5G16540.4 | 32.258 | 155 | 76 | 5 | 11 | 160 | 1 | 131 | 2.35e-17 | 80.1 |
| Msa0126400 | AT3G12680.1 | 31.016 | 187 | 58 | 6 | 27 | 202 | 171 | 297 | 3.40e-21 | 93.2 |
| Msa0126400 | AT3G12680.1 | 24.476 | 286 | 124 | 8 | 17 | 230 | 212 | 477 | 5.84e-17 | 80.5 |
| Msa0126400 | AT5G63260.2 | 30.841 | 214 | 105 | 7 | 28 | 198 | 208 | 421 | 2.29e-19 | 87.4 |
| Msa0126400 | AT5G63260.1 | 30.841 | 214 | 105 | 7 | 28 | 198 | 192 | 405 | 2.52e-19 | 87.4 |
| Msa0126400 | AT3G48440.1 | 30.734 | 218 | 102 | 8 | 28 | 198 | 202 | 417 | 3.58e-19 | 87.0 |
| Msa0126400 | AT2G47850.2 | 40.952 | 105 | 40 | 2 | 124 | 210 | 246 | 346 | 2.27e-18 | 84.7 |
| Msa0126400 | AT2G47850.2 | 49.091 | 55 | 22 | 1 | 7 | 61 | 28 | 76 | 1.23e-11 | 64.7 |
| Msa0126400 | AT3G06410.1 | 31.410 | 156 | 86 | 5 | 7 | 159 | 29 | 166 | 8.88e-17 | 80.1 |
| Msa0126400 | AT3G06410.1 | 38.636 | 88 | 30 | 3 | 129 | 198 | 297 | 378 | 2.18e-11 | 63.9 |
| Msa0126400 | AT5G18550.3 | 32.667 | 150 | 56 | 6 | 25 | 160 | 14 | 132 | 6.67e-15 | 74.3 |
| Msa0126400 | AT5G18550.3 | 35.897 | 78 | 37 | 1 | 134 | 198 | 261 | 338 | 7.72e-11 | 62.4 |
| Msa0126400 | AT5G18550.1 | 32.667 | 150 | 56 | 6 | 25 | 160 | 46 | 164 | 7.54e-15 | 74.3 |
| Msa0126400 | AT5G18550.1 | 35.897 | 78 | 37 | 1 | 134 | 198 | 293 | 370 | 7.16e-11 | 62.4 |
| Msa0126400 | AT5G18550.2 | 32.667 | 150 | 56 | 6 | 25 | 160 | 46 | 164 | 7.72e-15 | 74.3 |
| Msa0126400 | AT5G18550.2 | 41.538 | 65 | 38 | 0 | 134 | 198 | 293 | 357 | 7.97e-13 | 68.2 |
| Msa0126400 | AT5G18550.4 | 32.667 | 150 | 56 | 6 | 25 | 160 | 46 | 164 | 8.94e-15 | 73.9 |
| Msa0126400 | AT5G18550.4 | 35.897 | 78 | 37 | 1 | 134 | 198 | 293 | 370 | 8.82e-11 | 62.4 |
Find 74 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAACGGCATATGCAGATT+TGG | 0.329888 | 1_3:+55489935 | Msa0126400:CDS |
| AAGACGGGAGATTGTAAGTT+TGG | 0.336397 | 1_3:+55489617 | Msa0126400:CDS |
| CAGATCGAGGATTTGCAAAT+TGG | 0.336712 | 1_3:+55489176 | Msa0126400:CDS |
| CTCCTCTGTGATGGACTGGC+TGG | 0.349951 | 1_3:-55489546 | None:intergenic |
| AGAACAGGAGAATGCAAATA+TGG | 0.354218 | 1_3:+55489062 | Msa0126400:intron |
| ACCATTGATAGGCATCTATT+AGG | 0.362910 | 1_3:+55490028 | Msa0126400:CDS |
| TTTAACCATCCTCGTGATAT+AGG | 0.383731 | 1_3:+55488423 | Msa0126400:CDS |
| TTCATGTAGAATCGGCATTC+AGG | 0.391570 | 1_3:-55489596 | None:intergenic |
| TAATATGATGCTTTCGCTAA+AGG | 0.405922 | 1_3:+55489111 | Msa0126400:CDS |
| AGAACTGGCCTTTGTAGATT+CGG | 0.445469 | 1_3:+55488387 | Msa0126400:CDS |
| TCAGGCTGACCGGGTCTATC+GGG | 0.448558 | 1_3:-55489578 | None:intergenic |
| TTCAGGCTGACCGGGTCTAT+CGG | 0.450161 | 1_3:-55489579 | None:intergenic |
| GCATCTATTAGGATATTTGT+TGG | 0.453142 | 1_3:+55490039 | Msa0126400:CDS |
| TGTTCATATTACATCAGAAC+TGG | 0.461732 | 1_3:+55488372 | Msa0126400:CDS |
| CTTCCGCCAACACCATTGAT+AGG | 0.466503 | 1_3:+55490017 | Msa0126400:CDS |
| CTCCCGTCTTCATGTAGAAT+CGG | 0.467724 | 1_3:-55489604 | None:intergenic |
| TCCTCTGTGATGGACTGGCT+GGG | 0.471004 | 1_3:-55489545 | None:intergenic |
| CCTCTGTGATGGACTGGCTG+GGG | 0.478741 | 1_3:-55489544 | None:intergenic |
| GATCTGGTGTTGTCGGAGAA+TGG | 0.485603 | 1_3:-55489159 | None:intergenic |
| TACAAGTTTAATCACCCAAT+GGG | 0.486528 | 1_3:+55489965 | Msa0126400:CDS |
| GAATCGGCATTCAGGCTGAC+CGG | 0.492319 | 1_3:-55489588 | None:intergenic |
| CTCTGATATTGAAAGCTCCT+AGG | 0.495047 | 1_3:-55490100 | None:intergenic |
| CAATTTGCAAATCCTCGATC+TGG | 0.500935 | 1_3:-55489175 | None:intergenic |
| AGTCAAGTTCAGCGAAGCCT+AGG | 0.501453 | 1_3:+55490083 | Msa0126400:CDS |
| TATAGCTGAAAATTCCCATT+GGG | 0.505896 | 1_3:-55489979 | None:intergenic |
| TGGACTGCAGTAGGGTAAAG+AGG | 0.508006 | 1_3:-55489139 | None:intergenic |
| GGGTGATTAAACTTGTAACT+AGG | 0.511733 | 1_3:-55489959 | None:intergenic |
| AAGGCTCTTCCTGTAGGAGA+TGG | 0.514927 | 1_3:-55489895 | None:intergenic |
| CTGATGTAATATGAACAATC+TGG | 0.515514 | 1_3:-55488366 | None:intergenic |
| AATCCTCGATCTGGTGTTGT+CGG | 0.519780 | 1_3:-55489166 | None:intergenic |
| ATGCCTATCAATGGTGTTGG+CGG | 0.523058 | 1_3:-55490020 | None:intergenic |
| CTCTGTGATGGACTGGCTGG+GGG | 0.525245 | 1_3:-55489543 | None:intergenic |
| TATCCAATCCCATCTCCTAC+AGG | 0.527058 | 1_3:+55489886 | Msa0126400:CDS |
| AATCGGCATTCAGGCTGACC+GGG | 0.530754 | 1_3:-55489587 | None:intergenic |
| AGCATCATATTACTCGGTTG+AGG | 0.532321 | 1_3:-55489100 | None:intergenic |
| TCCTAATAGATGCCTATCAA+TGG | 0.535772 | 1_3:-55490029 | None:intergenic |
| CGTAAAACTTGAAGGAACAT+AGG | 0.536610 | 1_3:-55489209 | None:intergenic |
| AGCGAAAGCATCATATTACT+CGG | 0.541737 | 1_3:-55489106 | None:intergenic |
| TGTATCTTCTATTCGCGCAA+CGG | 0.545144 | 1_3:+55489920 | Msa0126400:CDS |
| GTCGGAGAATGGACTGCAGT+AGG | 0.545158 | 1_3:-55489148 | None:intergenic |
| TGCCGATTCTACATGAAGAC+GGG | 0.548110 | 1_3:+55489602 | Msa0126400:CDS |
| CTTCCTGTAGGAGATGGGAT+TGG | 0.550037 | 1_3:-55489889 | None:intergenic |
| TGTACTCCTCTGTGATGGAC+TGG | 0.550358 | 1_3:-55489550 | None:intergenic |
| AGGCTCTTCCTGTAGGAGAT+GGG | 0.557391 | 1_3:-55489894 | None:intergenic |
| GAGGATTTGCAAATTGGTCA+AGG | 0.558019 | 1_3:+55489182 | Msa0126400:CDS |
| TATGAACAATCTGGTTCACC+TGG | 0.563343 | 1_3:-55488357 | None:intergenic |
| TAGATGCCTATCAATGGTGT+TGG | 0.568057 | 1_3:-55490023 | None:intergenic |
| TTGTAAGTTTGGCAGTCTGT+CGG | 0.568628 | 1_3:+55489628 | Msa0126400:CDS |
| GAATCTTATCCACAGCATCC+AGG | 0.569004 | 1_3:+55488339 | Msa0126400:CDS |
| ATTGAGGTCAAGTGAAACAA+TGG | 0.575506 | 1_3:+55488311 | Msa0126400:CDS |
| TATTACTCGGTTGAGGATGG+TGG | 0.577752 | 1_3:-55489093 | None:intergenic |
| TCGGAGAATGGACTGCAGTA+GGG | 0.578447 | 1_3:-55489147 | None:intergenic |
| TCATATTACTCGGTTGAGGA+TGG | 0.578783 | 1_3:-55489096 | None:intergenic |
| CTATCAATGGTGTTGGCGGA+AGG | 0.580409 | 1_3:-55490016 | None:intergenic |
| CACTGTGGATGATGAAATTG+AGG | 0.580517 | 1_3:+55488295 | Msa0126400:CDS |
| TTATAGCTGAAAATTCCCAT+TGG | 0.583088 | 1_3:-55489980 | None:intergenic |
| AAATATGTACTCCTCTGTGA+TGG | 0.584832 | 1_3:-55489555 | None:intergenic |
| TTACAAGTTTAATCACCCAA+TGG | 0.591702 | 1_3:+55489964 | Msa0126400:CDS |
| AGGATTTGCAAATTGGTCAA+GGG | 0.595835 | 1_3:+55489183 | Msa0126400:CDS |
| ATCCTCGTGATATAGGAAGC+TGG | 0.596019 | 1_3:+55488430 | Msa0126400:CDS |
| GATGATGATGACACTGATGA+AGG | 0.603076 | 1_3:+55490147 | Msa0126400:CDS |
| TCTGGTTCACCTGGATGCTG+TGG | 0.603794 | 1_3:-55488348 | None:intergenic |
| TTGCCTATTAATTACGCGAG+TGG | 0.610858 | 1_3:-55489656 | None:intergenic |
| ATGCCGATTCTACATGAAGA+CGG | 0.617432 | 1_3:+55489601 | Msa0126400:CDS |
| TACATATTTCCCGATAGACC+CGG | 0.623357 | 1_3:+55489569 | Msa0126400:CDS |
| AGCTTCCTATATCACGAGGA+TGG | 0.626579 | 1_3:-55488428 | None:intergenic |
| TACACAAAGGCTCTTCCTGT+AGG | 0.660742 | 1_3:-55489901 | None:intergenic |
| ATGTGGCACCGAATCTACAA+AGG | 0.662416 | 1_3:-55488395 | None:intergenic |
| GATGATGACACTGATGAAGG+TGG | 0.674036 | 1_3:+55490150 | Msa0126400:CDS |
| TCTCCGACAACACCAGATCG+AGG | 0.683122 | 1_3:+55489163 | Msa0126400:CDS |
| CGCGAATAGAAGATACACAA+AGG | 0.683716 | 1_3:-55489914 | None:intergenic |
| AGGATGGTTAAATCGACATG+TGG | 0.688383 | 1_3:-55488412 | None:intergenic |
| TACCAGCTTCCTATATCACG+AGG | 0.705775 | 1_3:-55488432 | None:intergenic |
| CCCCAGCCAGTCCATCACAG+AGG | 0.763760 | 1_3:+55489544 | Msa0126400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAATAATATTTTGCA+GGG | + | chr1_3:55489489-55489508 | Msa0126400:intron | 10.0% |
| !!! | AAATTAAATAATATTTTGCA+GGG | + | chr1_3:55489489-55489508 | Msa0126400:intron | 10.0% |
| !! | TGAACAAATGTTAAATATTT+AGG | - | chr1_3:55488504-55488523 | None:intergenic | 15.0% |
| !!! | GAAATTAAATAATATTTTGC+AGG | + | chr1_3:55489488-55489507 | Msa0126400:intron | 15.0% |
| !! | TGAACAAATGTTAAATATTT+AGG | - | chr1_3:55488504-55488523 | None:intergenic | 15.0% |
| !!! | GAAATTAAATAATATTTTGC+AGG | + | chr1_3:55489488-55489507 | Msa0126400:intron | 15.0% |
| !! | AATTCATAATTTATTCCTCT+AGG | + | chr1_3:55488544-55488563 | Msa0126400:intron | 20.0% |
| !!! | ATAATGATTTAAAAGGTGTT+GGG | - | chr1_3:55488746-55488765 | None:intergenic | 20.0% |
| !! | TGATTACTGAAGTAAATTAA+AGG | - | chr1_3:55489402-55489421 | None:intergenic | 20.0% |
| !! | TTAATTTACTTCAGTAATCA+TGG | + | chr1_3:55489402-55489421 | Msa0126400:intron | 20.0% |
| !! | TTAAAAGTAAAATCTGATAG+AGG | + | chr1_3:55489860-55489879 | Msa0126400:intron | 20.0% |
| !! | AATTCATAATTTATTCCTCT+AGG | + | chr1_3:55488544-55488563 | Msa0126400:intron | 20.0% |
| !!! | ATAATGATTTAAAAGGTGTT+GGG | - | chr1_3:55488746-55488765 | None:intergenic | 20.0% |
| !! | TGATTACTGAAGTAAATTAA+AGG | - | chr1_3:55489402-55489421 | None:intergenic | 20.0% |
| !! | TTAATTTACTTCAGTAATCA+TGG | + | chr1_3:55489402-55489421 | Msa0126400:intron | 20.0% |
| !! | TTAAAAGTAAAATCTGATAG+AGG | + | chr1_3:55489860-55489879 | Msa0126400:intron | 20.0% |
| !! | GATAATGATTTAAAAGGTGT+TGG | - | chr1_3:55488747-55488766 | None:intergenic | 25.0% |
| ! | GACATCGATAATGATTTAAA+AGG | - | chr1_3:55488753-55488772 | None:intergenic | 25.0% |
| ! | AACTTATAAGTCAATTTCAC+CGG | - | chr1_3:55488792-55488811 | None:intergenic | 25.0% |
| ! | GGAAAATATATATAGATGAC+AGG | - | chr1_3:55488865-55488884 | None:intergenic | 25.0% |
| ! | AGAACAAGATCACAAAAATT+TGG | - | chr1_3:55488886-55488905 | None:intergenic | 25.0% |
| ! | ATAGATGTGTAAATTTCTGT+TGG | + | chr1_3:55488947-55488966 | Msa0126400:intron | 25.0% |
| !!! | TGCAAATTGGAATTAGTTTT+AGG | + | chr1_3:55489255-55489274 | Msa0126400:intron | 25.0% |
| !! | TCTGTTAGAATATTGGTTAT+AGG | - | chr1_3:55489351-55489370 | None:intergenic | 25.0% |
| ! | TATGACTTTACAAGTAGTTA+CGG | - | chr1_3:55489741-55489760 | None:intergenic | 25.0% |
| !! | GATAATGATTTAAAAGGTGT+TGG | - | chr1_3:55488747-55488766 | None:intergenic | 25.0% |
| ! | GACATCGATAATGATTTAAA+AGG | - | chr1_3:55488753-55488772 | None:intergenic | 25.0% |
| ! | AACTTATAAGTCAATTTCAC+CGG | - | chr1_3:55488792-55488811 | None:intergenic | 25.0% |
| ! | GGAAAATATATATAGATGAC+AGG | - | chr1_3:55488865-55488884 | None:intergenic | 25.0% |
| ! | AGAACAAGATCACAAAAATT+TGG | - | chr1_3:55488886-55488905 | None:intergenic | 25.0% |
| ! | ATAGATGTGTAAATTTCTGT+TGG | + | chr1_3:55488947-55488966 | Msa0126400:intron | 25.0% |
| !!! | TGCAAATTGGAATTAGTTTT+AGG | + | chr1_3:55489255-55489274 | Msa0126400:intron | 25.0% |
| !! | TCTGTTAGAATATTGGTTAT+AGG | - | chr1_3:55489351-55489370 | None:intergenic | 25.0% |
| ! | TATGACTTTACAAGTAGTTA+CGG | - | chr1_3:55489741-55489760 | None:intergenic | 25.0% |
| CTGATGTAATATGAACAATC+TGG | - | chr1_3:55488369-55488388 | None:intergenic | 30.0% | |
| TGTTCATATTACATCAGAAC+TGG | + | chr1_3:55488372-55488391 | Msa0126400:CDS | 30.0% | |
| ATTCATCTATAAGAACCTAG+AGG | - | chr1_3:55488562-55488581 | None:intergenic | 30.0% | |
| TCTATCACTCAGAATAAGAA+TGG | - | chr1_3:55488595-55488614 | None:intergenic | 30.0% | |
| ATGAATCTTCCATGTTCATT+TGG | + | chr1_3:55488825-55488844 | Msa0126400:intron | 30.0% | |
| !! | TTCATTTGGTAACGAACAAT+TGG | + | chr1_3:55488839-55488858 | Msa0126400:intron | 30.0% |
| TAATATGATGCTTTCGCTAA+AGG | + | chr1_3:55489111-55489130 | Msa0126400:CDS | 30.0% | |
| ! | ATTAAAGGCGTAAAACTTGA+AGG | - | chr1_3:55489220-55489239 | None:intergenic | 30.0% |
| TTTACGCCTTTAATTATGTC+TGG | + | chr1_3:55489226-55489245 | Msa0126400:intron | 30.0% | |
| CACTGTATCTGTTAGAATAT+TGG | - | chr1_3:55489358-55489377 | None:intergenic | 30.0% | |
| CATAATACATATTGCAACAC+AGG | - | chr1_3:55489451-55489470 | None:intergenic | 30.0% | |
| ! | TAATATTTTGCAGGGTCAAA+TGG | + | chr1_3:55489497-55489516 | Msa0126400:intron | 30.0% |
| ! | AATATTTTGCAGGGTCAAAT+GGG | + | chr1_3:55489498-55489517 | Msa0126400:intron | 30.0% |
| TTACAAGTTTAATCACCCAA+TGG | + | chr1_3:55489964-55489983 | Msa0126400:CDS | 30.0% | |
| TACAAGTTTAATCACCCAAT+GGG | + | chr1_3:55489965-55489984 | Msa0126400:CDS | 30.0% | |
| TATAGCTGAAAATTCCCATT+GGG | - | chr1_3:55489982-55490001 | None:intergenic | 30.0% | |
| TTATAGCTGAAAATTCCCAT+TGG | - | chr1_3:55489983-55490002 | None:intergenic | 30.0% | |
| GCATCTATTAGGATATTTGT+TGG | + | chr1_3:55490039-55490058 | Msa0126400:CDS | 30.0% | |
| CTGATGTAATATGAACAATC+TGG | - | chr1_3:55488369-55488388 | None:intergenic | 30.0% | |
| TGTTCATATTACATCAGAAC+TGG | + | chr1_3:55488372-55488391 | Msa0126400:CDS | 30.0% | |
| ATTCATCTATAAGAACCTAG+AGG | - | chr1_3:55488562-55488581 | None:intergenic | 30.0% | |
| TCTATCACTCAGAATAAGAA+TGG | - | chr1_3:55488595-55488614 | None:intergenic | 30.0% | |
| ATGAATCTTCCATGTTCATT+TGG | + | chr1_3:55488825-55488844 | Msa0126400:intron | 30.0% | |
| !! | TTCATTTGGTAACGAACAAT+TGG | + | chr1_3:55488839-55488858 | Msa0126400:intron | 30.0% |
| TAATATGATGCTTTCGCTAA+AGG | + | chr1_3:55489111-55489130 | Msa0126400:CDS | 30.0% | |
| ! | ATTAAAGGCGTAAAACTTGA+AGG | - | chr1_3:55489220-55489239 | None:intergenic | 30.0% |
| TTTACGCCTTTAATTATGTC+TGG | + | chr1_3:55489226-55489245 | Msa0126400:intron | 30.0% | |
| CACTGTATCTGTTAGAATAT+TGG | - | chr1_3:55489358-55489377 | None:intergenic | 30.0% | |
| CATAATACATATTGCAACAC+AGG | - | chr1_3:55489451-55489470 | None:intergenic | 30.0% | |
| ! | TAATATTTTGCAGGGTCAAA+TGG | + | chr1_3:55489497-55489516 | Msa0126400:intron | 30.0% |
| ! | AATATTTTGCAGGGTCAAAT+GGG | + | chr1_3:55489498-55489517 | Msa0126400:intron | 30.0% |
| TTACAAGTTTAATCACCCAA+TGG | + | chr1_3:55489964-55489983 | Msa0126400:CDS | 30.0% | |
| TACAAGTTTAATCACCCAAT+GGG | + | chr1_3:55489965-55489984 | Msa0126400:CDS | 30.0% | |
| TATAGCTGAAAATTCCCATT+GGG | - | chr1_3:55489982-55490001 | None:intergenic | 30.0% | |
| TTATAGCTGAAAATTCCCAT+TGG | - | chr1_3:55489983-55490002 | None:intergenic | 30.0% | |
| GCATCTATTAGGATATTTGT+TGG | + | chr1_3:55490039-55490058 | Msa0126400:CDS | 30.0% | |
| ATTGAGGTCAAGTGAAACAA+TGG | + | chr1_3:55488311-55488330 | Msa0126400:CDS | 35.0% | |
| TTTAACCATCCTCGTGATAT+AGG | + | chr1_3:55488423-55488442 | Msa0126400:CDS | 35.0% | |
| GTCCAAGTATATATCACTAC+CGG | + | chr1_3:55488770-55488789 | Msa0126400:intron | 35.0% | |
| TGTTCGTTACCAAATGAACA+TGG | - | chr1_3:55488837-55488856 | None:intergenic | 35.0% | |
| TTCTGAATTTCCTGCTTCTT+TGG | + | chr1_3:55489006-55489025 | Msa0126400:intron | 35.0% | |
| TGCAGCTATTATTTGAGAAC+AGG | + | chr1_3:55489047-55489066 | Msa0126400:intron | 35.0% | |
| AGAACAGGAGAATGCAAATA+TGG | + | chr1_3:55489062-55489081 | Msa0126400:intron | 35.0% | |
| !! | AGCGAAAGCATCATATTACT+CGG | - | chr1_3:55489109-55489128 | None:intergenic | 35.0% |
| AGGATTTGCAAATTGGTCAA+GGG | + | chr1_3:55489183-55489202 | Msa0126400:CDS | 35.0% | |
| CGTAAAACTTGAAGGAACAT+AGG | - | chr1_3:55489212-55489231 | None:intergenic | 35.0% | |
| ACTTCAGTAATCATGGAACA+TGG | + | chr1_3:55489409-55489428 | Msa0126400:intron | 35.0% | |
| AAATATGTACTCCTCTGTGA+TGG | - | chr1_3:55489558-55489577 | None:intergenic | 35.0% | |
| GGGTGATTAAACTTGTAACT+AGG | - | chr1_3:55489962-55489981 | None:intergenic | 35.0% | |
| ACCATTGATAGGCATCTATT+AGG | + | chr1_3:55490028-55490047 | Msa0126400:CDS | 35.0% | |
| TCCTAATAGATGCCTATCAA+TGG | - | chr1_3:55490032-55490051 | None:intergenic | 35.0% | |
| TCATCATCATCATCATCAGA+AGG | - | chr1_3:55490138-55490157 | None:intergenic | 35.0% | |
| ATTGAGGTCAAGTGAAACAA+TGG | + | chr1_3:55488311-55488330 | Msa0126400:CDS | 35.0% | |
| TTTAACCATCCTCGTGATAT+AGG | + | chr1_3:55488423-55488442 | Msa0126400:CDS | 35.0% | |
| GTCCAAGTATATATCACTAC+CGG | + | chr1_3:55488770-55488789 | Msa0126400:intron | 35.0% | |
| TGTTCGTTACCAAATGAACA+TGG | - | chr1_3:55488837-55488856 | None:intergenic | 35.0% | |
| TTCTGAATTTCCTGCTTCTT+TGG | + | chr1_3:55489006-55489025 | Msa0126400:intron | 35.0% | |
| TGCAGCTATTATTTGAGAAC+AGG | + | chr1_3:55489047-55489066 | Msa0126400:intron | 35.0% | |
| AGAACAGGAGAATGCAAATA+TGG | + | chr1_3:55489062-55489081 | Msa0126400:intron | 35.0% | |
| !! | AGCGAAAGCATCATATTACT+CGG | - | chr1_3:55489109-55489128 | None:intergenic | 35.0% |
| AGGATTTGCAAATTGGTCAA+GGG | + | chr1_3:55489183-55489202 | Msa0126400:CDS | 35.0% | |
| CGTAAAACTTGAAGGAACAT+AGG | - | chr1_3:55489212-55489231 | None:intergenic | 35.0% | |
| ACTTCAGTAATCATGGAACA+TGG | + | chr1_3:55489409-55489428 | Msa0126400:intron | 35.0% | |
| AAATATGTACTCCTCTGTGA+TGG | - | chr1_3:55489558-55489577 | None:intergenic | 35.0% | |
| GGGTGATTAAACTTGTAACT+AGG | - | chr1_3:55489962-55489981 | None:intergenic | 35.0% | |
| ACCATTGATAGGCATCTATT+AGG | + | chr1_3:55490028-55490047 | Msa0126400:CDS | 35.0% | |
| TCCTAATAGATGCCTATCAA+TGG | - | chr1_3:55490032-55490051 | None:intergenic | 35.0% | |
| TCATCATCATCATCATCAGA+AGG | - | chr1_3:55490138-55490157 | None:intergenic | 35.0% | |
| CACTGTGGATGATGAAATTG+AGG | + | chr1_3:55488295-55488314 | Msa0126400:CDS | 40.0% | |
| ! | TATGAACAATCTGGTTCACC+TGG | - | chr1_3:55488360-55488379 | None:intergenic | 40.0% |
| !! | AGAACTGGCCTTTGTAGATT+CGG | + | chr1_3:55488387-55488406 | Msa0126400:CDS | 40.0% |
| AGGATGGTTAAATCGACATG+TGG | - | chr1_3:55488415-55488434 | None:intergenic | 40.0% | |
| ACAACTTCAATCCAAGGTGT+CGG | - | chr1_3:55488690-55488709 | None:intergenic | 40.0% | |
| CTAGACACAACTTCAATCCA+AGG | - | chr1_3:55488696-55488715 | None:intergenic | 40.0% | |
| CACCGGTAGTGATATATACT+TGG | - | chr1_3:55488775-55488794 | None:intergenic | 40.0% | |
| TGTGATCTTGTTCTTGCAAG+CGG | + | chr1_3:55488892-55488911 | Msa0126400:intron | 40.0% | |
| TCATATTACTCGGTTGAGGA+TGG | - | chr1_3:55489099-55489118 | None:intergenic | 40.0% | |
| AGCATCATATTACTCGGTTG+AGG | - | chr1_3:55489103-55489122 | None:intergenic | 40.0% | |
| CAATTTGCAAATCCTCGATC+TGG | - | chr1_3:55489178-55489197 | None:intergenic | 40.0% | |
| CAGATCGAGGATTTGCAAAT+TGG | + | chr1_3:55489176-55489195 | Msa0126400:CDS | 40.0% | |
| GAGGATTTGCAAATTGGTCA+AGG | + | chr1_3:55489182-55489201 | Msa0126400:CDS | 40.0% | |
| CGCCTTTAATTATGTCTGGA+CGG | + | chr1_3:55489230-55489249 | Msa0126400:intron | 40.0% | |
| CTCCGTCCAGACATAATTAA+AGG | - | chr1_3:55489235-55489254 | None:intergenic | 40.0% | |
| TAACAGATACAGTGCAGCAT+TGG | + | chr1_3:55489364-55489383 | Msa0126400:intron | 40.0% | |
| TACATATTTCCCGATAGACC+CGG | + | chr1_3:55489569-55489588 | Msa0126400:CDS | 40.0% | |
| TTCATGTAGAATCGGCATTC+AGG | - | chr1_3:55489599-55489618 | None:intergenic | 40.0% | |
| !! | ATGCCGATTCTACATGAAGA+CGG | + | chr1_3:55489601-55489620 | Msa0126400:CDS | 40.0% |
| AAGACGGGAGATTGTAAGTT+TGG | + | chr1_3:55489617-55489636 | Msa0126400:CDS | 40.0% | |
| TTGTAAGTTTGGCAGTCTGT+CGG | + | chr1_3:55489628-55489647 | Msa0126400:CDS | 40.0% | |
| CTACCACTCGCGTAATTAAT+AGG | + | chr1_3:55489653-55489672 | Msa0126400:intron | 40.0% | |
| TTGCCTATTAATTACGCGAG+TGG | - | chr1_3:55489659-55489678 | None:intergenic | 40.0% | |
| CGCGAATAGAAGATACACAA+AGG | - | chr1_3:55489917-55489936 | None:intergenic | 40.0% | |
| TGTATCTTCTATTCGCGCAA+CGG | + | chr1_3:55489920-55489939 | Msa0126400:CDS | 40.0% | |
| TAGATGCCTATCAATGGTGT+TGG | - | chr1_3:55490026-55490045 | None:intergenic | 40.0% | |
| CTCTGATATTGAAAGCTCCT+AGG | - | chr1_3:55490103-55490122 | None:intergenic | 40.0% | |
| ! | GATGATGATGACACTGATGA+AGG | + | chr1_3:55490147-55490166 | Msa0126400:CDS | 40.0% |
| CACTGTGGATGATGAAATTG+AGG | + | chr1_3:55488295-55488314 | Msa0126400:CDS | 40.0% | |
| ! | TATGAACAATCTGGTTCACC+TGG | - | chr1_3:55488360-55488379 | None:intergenic | 40.0% |
| !! | AGAACTGGCCTTTGTAGATT+CGG | + | chr1_3:55488387-55488406 | Msa0126400:CDS | 40.0% |
| AGGATGGTTAAATCGACATG+TGG | - | chr1_3:55488415-55488434 | None:intergenic | 40.0% | |
| ACAACTTCAATCCAAGGTGT+CGG | - | chr1_3:55488690-55488709 | None:intergenic | 40.0% | |
| CTAGACACAACTTCAATCCA+AGG | - | chr1_3:55488696-55488715 | None:intergenic | 40.0% | |
| CACCGGTAGTGATATATACT+TGG | - | chr1_3:55488775-55488794 | None:intergenic | 40.0% | |
| TGTGATCTTGTTCTTGCAAG+CGG | + | chr1_3:55488892-55488911 | Msa0126400:intron | 40.0% | |
| TCATATTACTCGGTTGAGGA+TGG | - | chr1_3:55489099-55489118 | None:intergenic | 40.0% | |
| AGCATCATATTACTCGGTTG+AGG | - | chr1_3:55489103-55489122 | None:intergenic | 40.0% | |
| CAATTTGCAAATCCTCGATC+TGG | - | chr1_3:55489178-55489197 | None:intergenic | 40.0% | |
| CAGATCGAGGATTTGCAAAT+TGG | + | chr1_3:55489176-55489195 | Msa0126400:CDS | 40.0% | |
| GAGGATTTGCAAATTGGTCA+AGG | + | chr1_3:55489182-55489201 | Msa0126400:CDS | 40.0% | |
| CGCCTTTAATTATGTCTGGA+CGG | + | chr1_3:55489230-55489249 | Msa0126400:intron | 40.0% | |
| CTCCGTCCAGACATAATTAA+AGG | - | chr1_3:55489235-55489254 | None:intergenic | 40.0% | |
| TAACAGATACAGTGCAGCAT+TGG | + | chr1_3:55489364-55489383 | Msa0126400:intron | 40.0% | |
| TACATATTTCCCGATAGACC+CGG | + | chr1_3:55489569-55489588 | Msa0126400:CDS | 40.0% | |
| TTCATGTAGAATCGGCATTC+AGG | - | chr1_3:55489599-55489618 | None:intergenic | 40.0% | |
| !! | ATGCCGATTCTACATGAAGA+CGG | + | chr1_3:55489601-55489620 | Msa0126400:CDS | 40.0% |
| AAGACGGGAGATTGTAAGTT+TGG | + | chr1_3:55489617-55489636 | Msa0126400:CDS | 40.0% | |
| TTGTAAGTTTGGCAGTCTGT+CGG | + | chr1_3:55489628-55489647 | Msa0126400:CDS | 40.0% | |
| CTACCACTCGCGTAATTAAT+AGG | + | chr1_3:55489653-55489672 | Msa0126400:intron | 40.0% | |
| TTGCCTATTAATTACGCGAG+TGG | - | chr1_3:55489659-55489678 | None:intergenic | 40.0% | |
| CGCGAATAGAAGATACACAA+AGG | - | chr1_3:55489917-55489936 | None:intergenic | 40.0% | |
| TGTATCTTCTATTCGCGCAA+CGG | + | chr1_3:55489920-55489939 | Msa0126400:CDS | 40.0% | |
| TAGATGCCTATCAATGGTGT+TGG | - | chr1_3:55490026-55490045 | None:intergenic | 40.0% | |
| CTCTGATATTGAAAGCTCCT+AGG | - | chr1_3:55490103-55490122 | None:intergenic | 40.0% | |
| ! | GATGATGATGACACTGATGA+AGG | + | chr1_3:55490147-55490166 | Msa0126400:CDS | 40.0% |
| !! | CTTTTGTTTCACGCTCACTG+TGG | + | chr1_3:55488280-55488299 | Msa0126400:CDS | 45.0% |
| GAATCTTATCCACAGCATCC+AGG | + | chr1_3:55488339-55488358 | Msa0126400:CDS | 45.0% | |
| ! | ATGTGGCACCGAATCTACAA+AGG | - | chr1_3:55488398-55488417 | None:intergenic | 45.0% |
| AGCTTCCTATATCACGAGGA+TGG | - | chr1_3:55488431-55488450 | None:intergenic | 45.0% | |
| ATCCTCGTGATATAGGAAGC+TGG | + | chr1_3:55488430-55488449 | Msa0126400:CDS | 45.0% | |
| TACCAGCTTCCTATATCACG+AGG | - | chr1_3:55488435-55488454 | None:intergenic | 45.0% | |
| TATTACTCGGTTGAGGATGG+TGG | - | chr1_3:55489096-55489115 | None:intergenic | 45.0% | |
| !! | AATCCTCGATCTGGTGTTGT+CGG | - | chr1_3:55489169-55489188 | None:intergenic | 45.0% |
| !! | TGCCGATTCTACATGAAGAC+GGG | + | chr1_3:55489602-55489621 | Msa0126400:CDS | 45.0% |
| CTCCCGTCTTCATGTAGAAT+CGG | - | chr1_3:55489607-55489626 | None:intergenic | 45.0% | |
| AACTCACAGGACGTAAAGGA+AGG | - | chr1_3:55489718-55489737 | None:intergenic | 45.0% | |
| CAAGTAGTTACGGAACTCAC+AGG | - | chr1_3:55489731-55489750 | None:intergenic | 45.0% | |
| TATCCAATCCCATCTCCTAC+AGG | + | chr1_3:55489886-55489905 | Msa0126400:CDS | 45.0% | |
| TACACAAAGGCTCTTCCTGT+AGG | - | chr1_3:55489904-55489923 | None:intergenic | 45.0% | |
| ! | ATGCCTATCAATGGTGTTGG+CGG | - | chr1_3:55490023-55490042 | None:intergenic | 45.0% |
| GATGATGACACTGATGAAGG+TGG | + | chr1_3:55490150-55490169 | Msa0126400:CDS | 45.0% | |
| !! | CTTTTGTTTCACGCTCACTG+TGG | + | chr1_3:55488280-55488299 | Msa0126400:CDS | 45.0% |
| GAATCTTATCCACAGCATCC+AGG | + | chr1_3:55488339-55488358 | Msa0126400:CDS | 45.0% | |
| ! | ATGTGGCACCGAATCTACAA+AGG | - | chr1_3:55488398-55488417 | None:intergenic | 45.0% |
| AGCTTCCTATATCACGAGGA+TGG | - | chr1_3:55488431-55488450 | None:intergenic | 45.0% | |
| ATCCTCGTGATATAGGAAGC+TGG | + | chr1_3:55488430-55488449 | Msa0126400:CDS | 45.0% | |
| TACCAGCTTCCTATATCACG+AGG | - | chr1_3:55488435-55488454 | None:intergenic | 45.0% | |
| TATTACTCGGTTGAGGATGG+TGG | - | chr1_3:55489096-55489115 | None:intergenic | 45.0% | |
| !! | AATCCTCGATCTGGTGTTGT+CGG | - | chr1_3:55489169-55489188 | None:intergenic | 45.0% |
| !! | TGCCGATTCTACATGAAGAC+GGG | + | chr1_3:55489602-55489621 | Msa0126400:CDS | 45.0% |
| CTCCCGTCTTCATGTAGAAT+CGG | - | chr1_3:55489607-55489626 | None:intergenic | 45.0% | |
| AACTCACAGGACGTAAAGGA+AGG | - | chr1_3:55489718-55489737 | None:intergenic | 45.0% | |
| CAAGTAGTTACGGAACTCAC+AGG | - | chr1_3:55489731-55489750 | None:intergenic | 45.0% | |
| TATCCAATCCCATCTCCTAC+AGG | + | chr1_3:55489886-55489905 | Msa0126400:CDS | 45.0% | |
| TACACAAAGGCTCTTCCTGT+AGG | - | chr1_3:55489904-55489923 | None:intergenic | 45.0% | |
| ! | ATGCCTATCAATGGTGTTGG+CGG | - | chr1_3:55490023-55490042 | None:intergenic | 45.0% |
| GATGATGACACTGATGAAGG+TGG | + | chr1_3:55490150-55490169 | Msa0126400:CDS | 45.0% | |
| CCTCATTCTGCCAAAGAAGC+AGG | - | chr1_3:55489019-55489038 | None:intergenic | 50.0% | |
| CCTGCTTCTTTGGCAGAATG+AGG | + | chr1_3:55489016-55489035 | Msa0126400:intron | 50.0% | |
| TGGACTGCAGTAGGGTAAAG+AGG | - | chr1_3:55489142-55489161 | None:intergenic | 50.0% | |
| !! | TCGGAGAATGGACTGCAGTA+GGG | - | chr1_3:55489150-55489169 | None:intergenic | 50.0% |
| !! | GATCTGGTGTTGTCGGAGAA+TGG | - | chr1_3:55489162-55489181 | None:intergenic | 50.0% |
| TGTCTGGACGGAGTGCAAAT+TGG | + | chr1_3:55489242-55489261 | Msa0126400:intron | 50.0% | |
| !! | TGTACTCCTCTGTGATGGAC+TGG | - | chr1_3:55489553-55489572 | None:intergenic | 50.0% |
| TCAAGAGAGTCAGGAGGATC+AGG | - | chr1_3:55489685-55489704 | None:intergenic | 50.0% | |
| TGAGACTCAAGAGAGTCAGG+AGG | - | chr1_3:55489691-55489710 | None:intergenic | 50.0% | |
| CTGTGAGACTCAAGAGAGTC+AGG | - | chr1_3:55489694-55489713 | None:intergenic | 50.0% | |
| CTGACTCTCTTGAGTCTCAC+AGG | + | chr1_3:55489692-55489711 | Msa0126400:intron | 50.0% | |
| ACGGAACTCACAGGACGTAA+AGG | - | chr1_3:55489722-55489741 | None:intergenic | 50.0% | |
| CTTCCTGTAGGAGATGGGAT+TGG | - | chr1_3:55489892-55489911 | None:intergenic | 50.0% | |
| AGGCTCTTCCTGTAGGAGAT+GGG | - | chr1_3:55489897-55489916 | None:intergenic | 50.0% | |
| AAGGCTCTTCCTGTAGGAGA+TGG | - | chr1_3:55489898-55489917 | None:intergenic | 50.0% | |
| CGCAACGGCATATGCAGATT+TGG | + | chr1_3:55489935-55489954 | Msa0126400:CDS | 50.0% | |
| !! | CTATCAATGGTGTTGGCGGA+AGG | - | chr1_3:55490019-55490038 | None:intergenic | 50.0% |
| CTTCCGCCAACACCATTGAT+AGG | + | chr1_3:55490017-55490036 | Msa0126400:CDS | 50.0% | |
| AGTCAAGTTCAGCGAAGCCT+AGG | + | chr1_3:55490083-55490102 | Msa0126400:CDS | 50.0% | |
| CCTCATTCTGCCAAAGAAGC+AGG | - | chr1_3:55489019-55489038 | None:intergenic | 50.0% | |
| CCTGCTTCTTTGGCAGAATG+AGG | + | chr1_3:55489016-55489035 | Msa0126400:intron | 50.0% | |
| TGGACTGCAGTAGGGTAAAG+AGG | - | chr1_3:55489142-55489161 | None:intergenic | 50.0% | |
| !! | TCGGAGAATGGACTGCAGTA+GGG | - | chr1_3:55489150-55489169 | None:intergenic | 50.0% |
| !! | GATCTGGTGTTGTCGGAGAA+TGG | - | chr1_3:55489162-55489181 | None:intergenic | 50.0% |
| TGTCTGGACGGAGTGCAAAT+TGG | + | chr1_3:55489242-55489261 | Msa0126400:intron | 50.0% | |
| !! | TGTACTCCTCTGTGATGGAC+TGG | - | chr1_3:55489553-55489572 | None:intergenic | 50.0% |
| TCAAGAGAGTCAGGAGGATC+AGG | - | chr1_3:55489685-55489704 | None:intergenic | 50.0% | |
| TGAGACTCAAGAGAGTCAGG+AGG | - | chr1_3:55489691-55489710 | None:intergenic | 50.0% | |
| CTGTGAGACTCAAGAGAGTC+AGG | - | chr1_3:55489694-55489713 | None:intergenic | 50.0% | |
| CTGACTCTCTTGAGTCTCAC+AGG | + | chr1_3:55489692-55489711 | Msa0126400:intron | 50.0% | |
| ACGGAACTCACAGGACGTAA+AGG | - | chr1_3:55489722-55489741 | None:intergenic | 50.0% | |
| CTTCCTGTAGGAGATGGGAT+TGG | - | chr1_3:55489892-55489911 | None:intergenic | 50.0% | |
| AGGCTCTTCCTGTAGGAGAT+GGG | - | chr1_3:55489897-55489916 | None:intergenic | 50.0% | |
| AAGGCTCTTCCTGTAGGAGA+TGG | - | chr1_3:55489898-55489917 | None:intergenic | 50.0% | |
| CGCAACGGCATATGCAGATT+TGG | + | chr1_3:55489935-55489954 | Msa0126400:CDS | 50.0% | |
| !! | CTATCAATGGTGTTGGCGGA+AGG | - | chr1_3:55490019-55490038 | None:intergenic | 50.0% |
| CTTCCGCCAACACCATTGAT+AGG | + | chr1_3:55490017-55490036 | Msa0126400:CDS | 50.0% | |
| AGTCAAGTTCAGCGAAGCCT+AGG | + | chr1_3:55490083-55490102 | Msa0126400:CDS | 50.0% | |
| ! | TCTGGTTCACCTGGATGCTG+TGG | - | chr1_3:55488351-55488370 | None:intergenic | 55.0% |
| !! | CCAAGGTGTCGGTGCTACAT+AGG | - | chr1_3:55488679-55488698 | None:intergenic | 55.0% |
| !! | CCTATGTAGCACCGACACCT+TGG | + | chr1_3:55488676-55488695 | Msa0126400:intron | 55.0% |
| !! | GTCGGAGAATGGACTGCAGT+AGG | - | chr1_3:55489151-55489170 | None:intergenic | 55.0% |
| TCTCCGACAACACCAGATCG+AGG | + | chr1_3:55489163-55489182 | Msa0126400:CDS | 55.0% | |
| !! | TCCTCTGTGATGGACTGGCT+GGG | - | chr1_3:55489548-55489567 | None:intergenic | 55.0% |
| TTCAGGCTGACCGGGTCTAT+CGG | - | chr1_3:55489582-55489601 | None:intergenic | 55.0% | |
| AATCGGCATTCAGGCTGACC+GGG | - | chr1_3:55489590-55489609 | None:intergenic | 55.0% | |
| GAATCGGCATTCAGGCTGAC+CGG | - | chr1_3:55489591-55489610 | None:intergenic | 55.0% | |
| ! | TCTGGTTCACCTGGATGCTG+TGG | - | chr1_3:55488351-55488370 | None:intergenic | 55.0% |
| !! | CCAAGGTGTCGGTGCTACAT+AGG | - | chr1_3:55488679-55488698 | None:intergenic | 55.0% |
| !! | CCTATGTAGCACCGACACCT+TGG | + | chr1_3:55488676-55488695 | Msa0126400:intron | 55.0% |
| !! | GTCGGAGAATGGACTGCAGT+AGG | - | chr1_3:55489151-55489170 | None:intergenic | 55.0% |
| TCTCCGACAACACCAGATCG+AGG | + | chr1_3:55489163-55489182 | Msa0126400:CDS | 55.0% | |
| !! | TCCTCTGTGATGGACTGGCT+GGG | - | chr1_3:55489548-55489567 | None:intergenic | 55.0% |
| TTCAGGCTGACCGGGTCTAT+CGG | - | chr1_3:55489582-55489601 | None:intergenic | 55.0% | |
| AATCGGCATTCAGGCTGACC+GGG | - | chr1_3:55489590-55489609 | None:intergenic | 55.0% | |
| GAATCGGCATTCAGGCTGAC+CGG | - | chr1_3:55489591-55489610 | None:intergenic | 55.0% | |
| !! | CTCTGTGATGGACTGGCTGG+GGG | - | chr1_3:55489546-55489565 | None:intergenic | 60.0% |
| !! | CCTCTGTGATGGACTGGCTG+GGG | - | chr1_3:55489547-55489566 | None:intergenic | 60.0% |
| !! | CTCCTCTGTGATGGACTGGC+TGG | - | chr1_3:55489549-55489568 | None:intergenic | 60.0% |
| TCAGGCTGACCGGGTCTATC+GGG | - | chr1_3:55489581-55489600 | None:intergenic | 60.0% | |
| !! | CTCTGTGATGGACTGGCTGG+GGG | - | chr1_3:55489546-55489565 | None:intergenic | 60.0% |
| !! | CCTCTGTGATGGACTGGCTG+GGG | - | chr1_3:55489547-55489566 | None:intergenic | 60.0% |
| !! | CTCCTCTGTGATGGACTGGC+TGG | - | chr1_3:55489549-55489568 | None:intergenic | 60.0% |
| TCAGGCTGACCGGGTCTATC+GGG | - | chr1_3:55489581-55489600 | None:intergenic | 60.0% | |
| CCCCAGCCAGTCCATCACAG+AGG | + | chr1_3:55489544-55489563 | Msa0126400:CDS | 65.0% | |
| CCCCAGCCAGTCCATCACAG+AGG | + | chr1_3:55489544-55489563 | Msa0126400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55488267 | 55490192 | 55488267 | ID=Msa0126400;Name=Msa0126400 |
| chr1_3 | mRNA | 55488267 | 55490192 | 55488267 | ID=Msa0126400-mRNA-1;Parent=Msa0126400;Name=Msa0126400-mRNA-1;_AED=0.25;_eAED=0.28;_QI=0|0|0|1|0.33|0.5|4|0|268 |
| chr1_3 | exon | 55488267 | 55488457 | 55488267 | ID=Msa0126400-mRNA-1:exon:17304;Parent=Msa0126400-mRNA-1 |
| chr1_3 | exon | 55489069 | 55489223 | 55489069 | ID=Msa0126400-mRNA-1:exon:17305;Parent=Msa0126400-mRNA-1 |
| chr1_3 | exon | 55489510 | 55489663 | 55489510 | ID=Msa0126400-mRNA-1:exon:17306;Parent=Msa0126400-mRNA-1 |
| chr1_3 | exon | 55489886 | 55490192 | 55489886 | ID=Msa0126400-mRNA-1:exon:17307;Parent=Msa0126400-mRNA-1 |
| chr1_3 | CDS | 55488267 | 55488457 | 55488267 | ID=Msa0126400-mRNA-1:cds;Parent=Msa0126400-mRNA-1 |
| chr1_3 | CDS | 55489069 | 55489223 | 55489069 | ID=Msa0126400-mRNA-1:cds;Parent=Msa0126400-mRNA-1 |
| chr1_3 | CDS | 55489510 | 55489663 | 55489510 | ID=Msa0126400-mRNA-1:cds;Parent=Msa0126400-mRNA-1 |
| chr1_3 | CDS | 55489886 | 55490192 | 55489886 | ID=Msa0126400-mRNA-1:cds;Parent=Msa0126400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
