Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128710 | A0A072VK17 | 95.652 | 69 | 3 | 0 | 1 | 69 | 55 | 123 | 3.12e-38 | 139 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0128710 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128710 | MtrunA17_Chr3g0082121 | 76.056 | 71 | 17 | 0 | 1 | 71 | 64 | 134 | 3.62e-29 | 114 |
| Msa0128710 | MtrunA17_Chr3g0082121 | 52.326 | 86 | 33 | 2 | 140 | 223 | 614 | 693 | 1.65e-19 | 86.7 |
| Msa0128710 | MtrunA17_Chr3g0082121 | 72.131 | 61 | 17 | 0 | 86 | 146 | 458 | 518 | 2.25e-13 | 68.9 |
| Msa0128710 | MtrunA17_Chr5g0401121 | 67.606 | 71 | 23 | 0 | 1 | 71 | 77 | 147 | 6.34e-24 | 94.0 |
| Msa0128710 | MtrunA17_Chr6g0458391 | 42.373 | 59 | 34 | 0 | 2 | 60 | 247 | 305 | 4.38e-12 | 65.1 |
| Msa0128710 | MtrunA17_Chr1g0203721 | 39.130 | 69 | 41 | 1 | 3 | 71 | 86 | 153 | 4.66e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAAGATACTTGCATAAA+AGG | 0.217633 | 1_3:-58539356 | Msa0128710:CDS |
| TTCATCATTCGCAATTGATA+TGG | 0.254192 | 1_3:+58538883 | None:intergenic |
| ACGCGCTGTGCATCCTGTTC+TGG | 0.282615 | 1_3:+58540577 | None:intergenic |
| TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | 1_3:-58540713 | Msa0128710:CDS |
| AATGATTATAGTAAAAGAAT+TGG | 0.319753 | 1_3:-58540737 | None:intergenic |
| ATGAGATTCTGAAGCTCTAT+TGG | 0.322184 | 1_3:+58539015 | None:intergenic |
| TATAGTAAAAGAATTGGATT+TGG | 0.342872 | 1_3:-58540731 | None:intergenic |
| GGAAATAAAAGCAGAATAGA+TGG | 0.381196 | 1_3:-58540692 | Msa0128710:CDS |
| GTTGGACTCTTCATAAACTT+TGG | 0.396971 | 1_3:+58538973 | None:intergenic |
| TCGAAAGATAGGGAAATATA+AGG | 0.398025 | 1_3:-58540537 | Msa0128710:intron |
| ATTTGGAGTGTAAACATTTG+CGG | 0.445050 | 1_3:+58539412 | None:intergenic |
| AAAGGGATGTCAATGCTAAA+CGG | 0.487954 | 1_3:-58539517 | Msa0128710:intron |
| AACAGGATGCACAGCGCGTA+TGG | 0.489143 | 1_3:-58540573 | Msa0128710:CDS |
| GGCAAAATGCATAAAGATGA+AGG | 0.490221 | 1_3:-58538831 | Msa0128710:CDS |
| GCATAAAAGGAGGTGAAAGA+AGG | 0.500971 | 1_3:-58539343 | Msa0128710:CDS |
| GCCTAAATTGAAAATGAAGA+AGG | 0.516431 | 1_3:-58539453 | Msa0128710:CDS |
| TCTAAAGCAGAAACCAGAAC+AGG | 0.540723 | 1_3:-58540590 | Msa0128710:CDS |
| CAACATAGACACCGTTGGCA+AGG | 0.578457 | 1_3:-58538852 | Msa0128710:CDS |
| GGATGGAGAATCAAGTGGAA+TGG | 0.591122 | 1_3:-58538915 | Msa0128710:CDS |
| TCTGCTTTAGACTCCGCCGT+CGG | 0.605472 | 1_3:+58540602 | None:intergenic |
| CAAGATACTTGCATAAAAGG+AGG | 0.623387 | 1_3:-58539353 | Msa0128710:CDS |
| AAGATTCACATGCTTCAAAG+AGG | 0.641966 | 1_3:-58540654 | Msa0128710:CDS |
| GACAACAACATAGACACCGT+TGG | 0.650357 | 1_3:-58538857 | Msa0128710:CDS |
| AGATTCACATGCTTCAAAGA+GGG | 0.653445 | 1_3:-58540653 | Msa0128710:CDS |
| TGACAAAAGACGTCAACCGA+CGG | 0.667263 | 1_3:-58540618 | Msa0128710:CDS |
| TATCTGGATGGAGAATCAAG+TGG | 0.685001 | 1_3:-58538920 | Msa0128710:CDS |
| CAAAAGACGTCAACCGACGG+CGG | 0.706901 | 1_3:-58540615 | Msa0128710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCTTTTATGATTTTCAAA+TGG | - | chr1_3:58539333-58539352 | Msa0128710:intron | 15.0% |
| !!! | AGCTAATAACAAATATATTT+TGG | - | chr1_3:58539365-58539384 | Msa0128710:CDS | 15.0% |
| !!! | GCTAATAACAAATATATTTT+GGG | - | chr1_3:58539366-58539385 | Msa0128710:CDS | 15.0% |
| !!! | TTTTTAAATTGAAGGAAAAA+TGG | - | chr1_3:58539875-58539894 | Msa0128710:intron | 15.0% |
| !!! | TTTTAAATTGAAGGAAAAAT+GGG | - | chr1_3:58539876-58539895 | Msa0128710:intron | 15.0% |
| !!! | AATTTTTTACTCACTTTAAA+AGG | - | chr1_3:58540010-58540029 | Msa0128710:intron | 15.0% |
| !!! | ATTTTTTACTCACTTTAAAA+GGG | - | chr1_3:58540011-58540030 | Msa0128710:intron | 15.0% |
| !!! | ATTCTTTTATGATTTTCAAA+TGG | - | chr1_3:58539333-58539352 | Msa0128710:intron | 15.0% |
| !!! | AGCTAATAACAAATATATTT+TGG | - | chr1_3:58539365-58539384 | Msa0128710:CDS | 15.0% |
| !!! | GCTAATAACAAATATATTTT+GGG | - | chr1_3:58539366-58539385 | Msa0128710:CDS | 15.0% |
| !!! | TTTTTAAATTGAAGGAAAAA+TGG | - | chr1_3:58539875-58539894 | Msa0128710:intron | 15.0% |
| !!! | TTTTAAATTGAAGGAAAAAT+GGG | - | chr1_3:58539876-58539895 | Msa0128710:intron | 15.0% |
| !!! | AATTTTTTACTCACTTTAAA+AGG | - | chr1_3:58540010-58540029 | Msa0128710:intron | 15.0% |
| !!! | ATTTTTTACTCACTTTAAAA+GGG | - | chr1_3:58540011-58540030 | Msa0128710:intron | 15.0% |
| !! | TGAAAATCATAAAAGAATGA+TGG | + | chr1_3:58539331-58539350 | None:intergenic | 20.0% |
| !!! | AATAACAAATATATTTTGGG+CGG | - | chr1_3:58539369-58539388 | Msa0128710:CDS | 20.0% |
| !! | ATTAATGATTATGGATACTT+TGG | - | chr1_3:58539403-58539422 | Msa0128710:CDS | 20.0% |
| !!! | AAAGTGAATTTTTGAATGAA+TGG | - | chr1_3:58539800-58539819 | Msa0128710:intron | 20.0% |
| !!! | GCATTCAATTTTTAAATTGA+AGG | - | chr1_3:58539867-58539886 | Msa0128710:intron | 20.0% |
| !! | AATTTATATCTGACTTCAAA+TGG | + | chr1_3:58539984-58540003 | None:intergenic | 20.0% |
| !!! | TTTGAAGTCAGATATAAATT+TGG | - | chr1_3:58539984-58540003 | Msa0128710:intron | 20.0% |
| !! | TGAAATTCCTCAAAAAAATT+TGG | + | chr1_3:58540153-58540172 | None:intergenic | 20.0% |
| !!! | CATATCATTAACTATTTTGT+TGG | + | chr1_3:58540593-58540612 | None:intergenic | 20.0% |
| !! | TGAAAATCATAAAAGAATGA+TGG | + | chr1_3:58539331-58539350 | None:intergenic | 20.0% |
| !!! | AATAACAAATATATTTTGGG+CGG | - | chr1_3:58539369-58539388 | Msa0128710:CDS | 20.0% |
| !! | ATTAATGATTATGGATACTT+TGG | - | chr1_3:58539403-58539422 | Msa0128710:CDS | 20.0% |
| !!! | AAAGTGAATTTTTGAATGAA+TGG | - | chr1_3:58539800-58539819 | Msa0128710:intron | 20.0% |
| !!! | GCATTCAATTTTTAAATTGA+AGG | - | chr1_3:58539867-58539886 | Msa0128710:intron | 20.0% |
| !! | AATTTATATCTGACTTCAAA+TGG | + | chr1_3:58539984-58540003 | None:intergenic | 20.0% |
| !!! | TTTGAAGTCAGATATAAATT+TGG | - | chr1_3:58539984-58540003 | Msa0128710:intron | 20.0% |
| !! | TGAAATTCCTCAAAAAAATT+TGG | + | chr1_3:58540153-58540172 | None:intergenic | 20.0% |
| !!! | CATATCATTAACTATTTTGT+TGG | + | chr1_3:58540593-58540612 | None:intergenic | 20.0% |
| !! | ATTTTACTTGATCGAAAGAT+AGG | - | chr1_3:58538997-58539016 | Msa0128710:CDS | 25.0% |
| !! | TTTTACTTGATCGAAAGATA+GGG | - | chr1_3:58538998-58539017 | Msa0128710:CDS | 25.0% |
| ! | ATATATTGATGCAATTCTCT+TGG | + | chr1_3:58539166-58539185 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAGCAAATTCTTA+AGG | + | chr1_3:58539237-58539256 | None:intergenic | 25.0% |
| !! | AGAATTTGCTTAAAACCAAA+AGG | - | chr1_3:58539239-58539258 | Msa0128710:intron | 25.0% |
| !! | TTGTTTGAAATATGTCATCA+AGG | + | chr1_3:58539296-58539315 | None:intergenic | 25.0% |
| !!! | ATAATGTTTTGAAAGATTCG+TGG | - | chr1_3:58539842-58539861 | Msa0128710:intron | 25.0% |
| ! | TTATGTTCGAAAAACATTCA+CGG | - | chr1_3:58539906-58539925 | Msa0128710:intron | 25.0% |
| !!! | TTACACTCCAAATTTTTTTG+AGG | - | chr1_3:58540143-58540162 | Msa0128710:intron | 25.0% |
| !!! | TTTTTTTGAGGAATTTCAAG+AGG | - | chr1_3:58540155-58540174 | Msa0128710:intron | 25.0% |
| ! | TATCAAGATACTTGCATAAA+AGG | - | chr1_3:58540189-58540208 | Msa0128710:intron | 25.0% |
| !! | CACAAATTATGATAATGCAA+AGG | - | chr1_3:58540237-58540256 | Msa0128710:intron | 25.0% |
| ! | TATGTTGTCCAAAAAATATC+TGG | - | chr1_3:58540609-58540628 | Msa0128710:CDS | 25.0% |
| !! | ATTTTACTTGATCGAAAGAT+AGG | - | chr1_3:58538997-58539016 | Msa0128710:CDS | 25.0% |
| !! | TTTTACTTGATCGAAAGATA+GGG | - | chr1_3:58538998-58539017 | Msa0128710:CDS | 25.0% |
| ! | ATATATTGATGCAATTCTCT+TGG | + | chr1_3:58539166-58539185 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAGCAAATTCTTA+AGG | + | chr1_3:58539237-58539256 | None:intergenic | 25.0% |
| !! | AGAATTTGCTTAAAACCAAA+AGG | - | chr1_3:58539239-58539258 | Msa0128710:intron | 25.0% |
| !! | TTGTTTGAAATATGTCATCA+AGG | + | chr1_3:58539296-58539315 | None:intergenic | 25.0% |
| !!! | ATAATGTTTTGAAAGATTCG+TGG | - | chr1_3:58539842-58539861 | Msa0128710:intron | 25.0% |
| ! | TTATGTTCGAAAAACATTCA+CGG | - | chr1_3:58539906-58539925 | Msa0128710:intron | 25.0% |
| !!! | TTACACTCCAAATTTTTTTG+AGG | - | chr1_3:58540143-58540162 | Msa0128710:intron | 25.0% |
| !!! | TTTTTTTGAGGAATTTCAAG+AGG | - | chr1_3:58540155-58540174 | Msa0128710:intron | 25.0% |
| ! | TATCAAGATACTTGCATAAA+AGG | - | chr1_3:58540189-58540208 | Msa0128710:intron | 25.0% |
| !! | CACAAATTATGATAATGCAA+AGG | - | chr1_3:58540237-58540256 | Msa0128710:intron | 25.0% |
| ! | TATGTTGTCCAAAAAATATC+TGG | - | chr1_3:58540609-58540628 | Msa0128710:CDS | 25.0% |
| GGAAATAAAAGCAGAATAGA+TGG | - | chr1_3:58538853-58538872 | Msa0128710:CDS | 30.0% | |
| TCGAAAGATAGGGAAATATA+AGG | - | chr1_3:58539008-58539027 | Msa0128710:CDS | 30.0% | |
| AGAATCATATGAACATACTC+AGG | + | chr1_3:58539075-58539094 | None:intergenic | 30.0% | |
| TAAGCAAATTCTTAAGGTCT+TGG | + | chr1_3:58539231-58539250 | None:intergenic | 30.0% | |
| GCACAGATGATTAATGATTA+TGG | - | chr1_3:58539394-58539413 | Msa0128710:CDS | 30.0% | |
| ! | ATCCTTATTTGTCTTGTAAG+TGG | + | chr1_3:58539449-58539468 | None:intergenic | 30.0% |
| AAATAAGGATTATCGACCTT+TGG | - | chr1_3:58539459-58539478 | Msa0128710:CDS | 30.0% | |
| AATAAGGATTATCGACCTTT+GGG | - | chr1_3:58539460-58539479 | Msa0128710:CDS | 30.0% | |
| TTGTTGGACTTAATAATCAC+AGG | - | chr1_3:58539488-58539507 | Msa0128710:CDS | 30.0% | |
| ! | AAACAATTCGTTCTTTTCAG+TGG | - | chr1_3:58539548-58539567 | Msa0128710:intron | 30.0% |
| !! | TGAAACTTTTCTGAAAGAAG+TGG | - | chr1_3:58539576-58539595 | Msa0128710:intron | 30.0% |
| !! | GAAACTTTTCTGAAAGAAGT+GGG | - | chr1_3:58539577-58539596 | Msa0128710:intron | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | + | chr1_3:58539613-58539632 | None:intergenic | 30.0% |
| GTTATGCCAAAAACATTTCA+TGG | - | chr1_3:58539664-58539683 | Msa0128710:intron | 30.0% | |
| ! | CACAATCCATGAAATGTTTT+TGG | + | chr1_3:58539673-58539692 | None:intergenic | 30.0% |
| ATATAAGACAGAATGCTCTT+AGG | - | chr1_3:58539701-58539720 | Msa0128710:intron | 30.0% | |
| GCCTAAATTGAAAATGAAGA+AGG | - | chr1_3:58540092-58540111 | Msa0128710:intron | 30.0% | |
| ! | GCCTTCTTCATTTTCAATTT+AGG | + | chr1_3:58540096-58540115 | None:intergenic | 30.0% |
| ! | ATTTGGAGTGTAAACATTTG+CGG | + | chr1_3:58540136-58540155 | None:intergenic | 30.0% |
| ! | CAAGAAACTTTTTGTTCCAT+AGG | + | chr1_3:58540283-58540302 | None:intergenic | 30.0% |
| !! | TCGTTTTAGTATGTAGTGTT+CGG | + | chr1_3:58540389-58540408 | None:intergenic | 30.0% |
| AACACTACATACTAAAACGA+TGG | - | chr1_3:58540389-58540408 | Msa0128710:intron | 30.0% | |
| TTGTCCAAAAAATATCTGGA+TGG | - | chr1_3:58540613-58540632 | Msa0128710:CDS | 30.0% | |
| !!! | TTCTCCATCCAGATATTTTT+TGG | + | chr1_3:58540620-58540639 | None:intergenic | 30.0% |
| TTCATCATTCGCAATTGATA+TGG | + | chr1_3:58540665-58540684 | None:intergenic | 30.0% | |
| GGAAATAAAAGCAGAATAGA+TGG | - | chr1_3:58538853-58538872 | Msa0128710:CDS | 30.0% | |
| TCGAAAGATAGGGAAATATA+AGG | - | chr1_3:58539008-58539027 | Msa0128710:CDS | 30.0% | |
| AGAATCATATGAACATACTC+AGG | + | chr1_3:58539075-58539094 | None:intergenic | 30.0% | |
| TAAGCAAATTCTTAAGGTCT+TGG | + | chr1_3:58539231-58539250 | None:intergenic | 30.0% | |
| GCACAGATGATTAATGATTA+TGG | - | chr1_3:58539394-58539413 | Msa0128710:CDS | 30.0% | |
| ! | ATCCTTATTTGTCTTGTAAG+TGG | + | chr1_3:58539449-58539468 | None:intergenic | 30.0% |
| AAATAAGGATTATCGACCTT+TGG | - | chr1_3:58539459-58539478 | Msa0128710:CDS | 30.0% | |
| AATAAGGATTATCGACCTTT+GGG | - | chr1_3:58539460-58539479 | Msa0128710:CDS | 30.0% | |
| TTGTTGGACTTAATAATCAC+AGG | - | chr1_3:58539488-58539507 | Msa0128710:CDS | 30.0% | |
| ! | AAACAATTCGTTCTTTTCAG+TGG | - | chr1_3:58539548-58539567 | Msa0128710:intron | 30.0% |
| !! | TGAAACTTTTCTGAAAGAAG+TGG | - | chr1_3:58539576-58539595 | Msa0128710:intron | 30.0% |
| !! | GAAACTTTTCTGAAAGAAGT+GGG | - | chr1_3:58539577-58539596 | Msa0128710:intron | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | + | chr1_3:58539613-58539632 | None:intergenic | 30.0% |
| GTTATGCCAAAAACATTTCA+TGG | - | chr1_3:58539664-58539683 | Msa0128710:intron | 30.0% | |
| ! | CACAATCCATGAAATGTTTT+TGG | + | chr1_3:58539673-58539692 | None:intergenic | 30.0% |
| ATATAAGACAGAATGCTCTT+AGG | - | chr1_3:58539701-58539720 | Msa0128710:intron | 30.0% | |
| GCCTAAATTGAAAATGAAGA+AGG | - | chr1_3:58540092-58540111 | Msa0128710:intron | 30.0% | |
| ! | GCCTTCTTCATTTTCAATTT+AGG | + | chr1_3:58540096-58540115 | None:intergenic | 30.0% |
| ! | ATTTGGAGTGTAAACATTTG+CGG | + | chr1_3:58540136-58540155 | None:intergenic | 30.0% |
| ! | CAAGAAACTTTTTGTTCCAT+AGG | + | chr1_3:58540283-58540302 | None:intergenic | 30.0% |
| !! | TCGTTTTAGTATGTAGTGTT+CGG | + | chr1_3:58540389-58540408 | None:intergenic | 30.0% |
| AACACTACATACTAAAACGA+TGG | - | chr1_3:58540389-58540408 | Msa0128710:intron | 30.0% | |
| TTGTCCAAAAAATATCTGGA+TGG | - | chr1_3:58540613-58540632 | Msa0128710:CDS | 30.0% | |
| !!! | TTCTCCATCCAGATATTTTT+TGG | + | chr1_3:58540620-58540639 | None:intergenic | 30.0% |
| TTCATCATTCGCAATTGATA+TGG | + | chr1_3:58540665-58540684 | None:intergenic | 30.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | - | chr1_3:58538832-58538851 | Msa0128710:CDS | 35.0% | |
| AAGATTCACATGCTTCAAAG+AGG | - | chr1_3:58538891-58538910 | Msa0128710:CDS | 35.0% | |
| AGATTCACATGCTTCAAAGA+GGG | - | chr1_3:58538892-58538911 | Msa0128710:CDS | 35.0% | |
| ATCATATGAACATACTCAGG+TGG | + | chr1_3:58539072-58539091 | None:intergenic | 35.0% | |
| ! | TCCTATCGACACATATTTTG+AGG | - | chr1_3:58539096-58539115 | Msa0128710:intron | 35.0% |
| ACAAGCATCACAAATTGTCT+TGG | - | chr1_3:58539120-58539139 | Msa0128710:intron | 35.0% | |
| CAAGCATCACAAATTGTCTT+GGG | - | chr1_3:58539121-58539140 | Msa0128710:intron | 35.0% | |
| CAATATATATCCAAGCAAGC+TGG | - | chr1_3:58539178-58539197 | Msa0128710:intron | 35.0% | |
| ! | CTTTAGTGATTGCTTCCTTT+TGG | + | chr1_3:58539257-58539276 | None:intergenic | 35.0% |
| AGGAAGCAATCACTAAAGTA+CGG | - | chr1_3:58539259-58539278 | Msa0128710:intron | 35.0% | |
| CACCACTTACAAGACAAATA+AGG | - | chr1_3:58539444-58539463 | Msa0128710:CDS | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | + | chr1_3:58539620-58539639 | None:intergenic | 35.0% | |
| ! | GCGAACTCTTTTGATATAGA+TGG | + | chr1_3:58539735-58539754 | None:intergenic | 35.0% |
| TGCATGCTTCAAAATCCAAA+TGG | + | chr1_3:58539762-58539781 | None:intergenic | 35.0% | |
| ATTGAAGGAAAAATGGGCAT+AGG | - | chr1_3:58539882-58539901 | Msa0128710:intron | 35.0% | |
| AAAGGGATGTCAATGCTAAA+CGG | - | chr1_3:58540028-58540047 | Msa0128710:intron | 35.0% | |
| CAAGATACTTGCATAAAAGG+AGG | - | chr1_3:58540192-58540211 | Msa0128710:intron | 35.0% | |
| ! | TGATAATGCAAAGGAGAAGA+TGG | - | chr1_3:58540246-58540265 | Msa0128710:intron | 35.0% |
| ! | TGTCGTAAATTTGAGACACA+TGG | - | chr1_3:58540307-58540326 | Msa0128710:intron | 35.0% |
| !! | CGTTTTAGTATGTAGTGTTC+GGG | + | chr1_3:58540388-58540407 | None:intergenic | 35.0% |
| TTGGTCAATTTAAGCAACTG+AGG | + | chr1_3:58540514-58540533 | None:intergenic | 35.0% | |
| !! | ATGAGATTCTGAAGCTCTAT+TGG | + | chr1_3:58540533-58540552 | None:intergenic | 35.0% |
| GTTGGACTCTTCATAAACTT+TGG | + | chr1_3:58540575-58540594 | None:intergenic | 35.0% | |
| GGCAAAATGCATAAAGATGA+AGG | - | chr1_3:58540714-58540733 | Msa0128710:CDS | 35.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | - | chr1_3:58538832-58538851 | Msa0128710:CDS | 35.0% | |
| AAGATTCACATGCTTCAAAG+AGG | - | chr1_3:58538891-58538910 | Msa0128710:CDS | 35.0% | |
| AGATTCACATGCTTCAAAGA+GGG | - | chr1_3:58538892-58538911 | Msa0128710:CDS | 35.0% | |
| ATCATATGAACATACTCAGG+TGG | + | chr1_3:58539072-58539091 | None:intergenic | 35.0% | |
| ! | TCCTATCGACACATATTTTG+AGG | - | chr1_3:58539096-58539115 | Msa0128710:intron | 35.0% |
| ACAAGCATCACAAATTGTCT+TGG | - | chr1_3:58539120-58539139 | Msa0128710:intron | 35.0% | |
| CAAGCATCACAAATTGTCTT+GGG | - | chr1_3:58539121-58539140 | Msa0128710:intron | 35.0% | |
| CAATATATATCCAAGCAAGC+TGG | - | chr1_3:58539178-58539197 | Msa0128710:intron | 35.0% | |
| ! | CTTTAGTGATTGCTTCCTTT+TGG | + | chr1_3:58539257-58539276 | None:intergenic | 35.0% |
| AGGAAGCAATCACTAAAGTA+CGG | - | chr1_3:58539259-58539278 | Msa0128710:intron | 35.0% | |
| CACCACTTACAAGACAAATA+AGG | - | chr1_3:58539444-58539463 | Msa0128710:CDS | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | + | chr1_3:58539620-58539639 | None:intergenic | 35.0% | |
| ! | GCGAACTCTTTTGATATAGA+TGG | + | chr1_3:58539735-58539754 | None:intergenic | 35.0% |
| TGCATGCTTCAAAATCCAAA+TGG | + | chr1_3:58539762-58539781 | None:intergenic | 35.0% | |
| ATTGAAGGAAAAATGGGCAT+AGG | - | chr1_3:58539882-58539901 | Msa0128710:intron | 35.0% | |
| AAAGGGATGTCAATGCTAAA+CGG | - | chr1_3:58540028-58540047 | Msa0128710:intron | 35.0% | |
| CAAGATACTTGCATAAAAGG+AGG | - | chr1_3:58540192-58540211 | Msa0128710:intron | 35.0% | |
| ! | TGATAATGCAAAGGAGAAGA+TGG | - | chr1_3:58540246-58540265 | Msa0128710:intron | 35.0% |
| ! | TGTCGTAAATTTGAGACACA+TGG | - | chr1_3:58540307-58540326 | Msa0128710:intron | 35.0% |
| !! | CGTTTTAGTATGTAGTGTTC+GGG | + | chr1_3:58540388-58540407 | None:intergenic | 35.0% |
| TTGGTCAATTTAAGCAACTG+AGG | + | chr1_3:58540514-58540533 | None:intergenic | 35.0% | |
| !! | ATGAGATTCTGAAGCTCTAT+TGG | + | chr1_3:58540533-58540552 | None:intergenic | 35.0% |
| GTTGGACTCTTCATAAACTT+TGG | + | chr1_3:58540575-58540594 | None:intergenic | 35.0% | |
| GGCAAAATGCATAAAGATGA+AGG | - | chr1_3:58540714-58540733 | Msa0128710:CDS | 35.0% | |
| ! | TCTAAAGCAGAAACCAGAAC+AGG | - | chr1_3:58538955-58538974 | Msa0128710:CDS | 40.0% |
| ! | GCCTCAAAATATGTGTCGAT+AGG | + | chr1_3:58539100-58539119 | None:intergenic | 40.0% |
| ATTGTCTTGGGAGATGAATC+TGG | - | chr1_3:58539133-58539152 | Msa0128710:intron | 40.0% | |
| TATATATCCAAGCAAGCTGG+TGG | - | chr1_3:58539181-58539200 | Msa0128710:intron | 40.0% | |
| ATATATCCAAGCAAGCTGGT+GGG | - | chr1_3:58539182-58539201 | Msa0128710:intron | 40.0% | |
| ATCACTAAAGTACGGTGAAG+TGG | - | chr1_3:58539267-58539286 | Msa0128710:intron | 40.0% | |
| TCACTAAAGTACGGTGAAGT+GGG | - | chr1_3:58539268-58539287 | Msa0128710:intron | 40.0% | |
| AGTCCAACAAATACACCCAA+AGG | + | chr1_3:58539478-58539497 | None:intergenic | 40.0% | |
| !!! | ACAGGCAAACCGTCATTTTT+GGG | - | chr1_3:58539506-58539525 | Msa0128710:CDS | 40.0% |
| CAATGTTGCCCCAAAAATGA+CGG | + | chr1_3:58539518-58539537 | None:intergenic | 40.0% | |
| !! | ACTTTTCTGAAAGAAGTGGG+TGG | - | chr1_3:58539580-58539599 | Msa0128710:intron | 40.0% |
| AACAGATCAAGATGCAGCAA+TGG | - | chr1_3:58539624-58539643 | Msa0128710:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | - | chr1_3:58539677-58539696 | Msa0128710:intron | 40.0% |
| AAAGAGTTCGCGATTCCATT+TGG | - | chr1_3:58539744-58539763 | Msa0128710:intron | 40.0% | |
| AGCATGCATAGATCTAGATG+AGG | - | chr1_3:58539774-58539793 | Msa0128710:intron | 40.0% | |
| ATGCATAGATCTAGATGAGG+AGG | - | chr1_3:58539777-58539796 | Msa0128710:intron | 40.0% | |
| GCATAAAAGGAGGTGAAAGA+AGG | - | chr1_3:58540202-58540221 | Msa0128710:intron | 40.0% | |
| TGCAAAGGAGAAGATGGTAA+TGG | - | chr1_3:58540252-58540271 | Msa0128710:intron | 40.0% | |
| GCAAAGGAGAAGATGGTAAT+GGG | - | chr1_3:58540253-58540272 | Msa0128710:intron | 40.0% | |
| !! | GATGGTAATGGGAAATCCTA+TGG | - | chr1_3:58540264-58540283 | Msa0128710:intron | 40.0% |
| GAAGTAATCAAGGTTGGAGT+GGG | - | chr1_3:58540431-58540450 | Msa0128710:intron | 40.0% | |
| AAAAAGCCCATTTCACGAAG+CGG | - | chr1_3:58540473-58540492 | Msa0128710:intron | 40.0% | |
| ATTGTACCGCTTCGTGAAAT+GGG | + | chr1_3:58540482-58540501 | None:intergenic | 40.0% | |
| TATCTGGATGGAGAATCAAG+TGG | - | chr1_3:58540625-58540644 | Msa0128710:CDS | 40.0% | |
| ! | TATGCATTTTGCCTTGCCAA+CGG | + | chr1_3:58540707-58540726 | None:intergenic | 40.0% |
| ! | TCTAAAGCAGAAACCAGAAC+AGG | - | chr1_3:58538955-58538974 | Msa0128710:CDS | 40.0% |
| ! | GCCTCAAAATATGTGTCGAT+AGG | + | chr1_3:58539100-58539119 | None:intergenic | 40.0% |
| ATTGTCTTGGGAGATGAATC+TGG | - | chr1_3:58539133-58539152 | Msa0128710:intron | 40.0% | |
| TATATATCCAAGCAAGCTGG+TGG | - | chr1_3:58539181-58539200 | Msa0128710:intron | 40.0% | |
| ATATATCCAAGCAAGCTGGT+GGG | - | chr1_3:58539182-58539201 | Msa0128710:intron | 40.0% | |
| ATCACTAAAGTACGGTGAAG+TGG | - | chr1_3:58539267-58539286 | Msa0128710:intron | 40.0% | |
| TCACTAAAGTACGGTGAAGT+GGG | - | chr1_3:58539268-58539287 | Msa0128710:intron | 40.0% | |
| AGTCCAACAAATACACCCAA+AGG | + | chr1_3:58539478-58539497 | None:intergenic | 40.0% | |
| !!! | ACAGGCAAACCGTCATTTTT+GGG | - | chr1_3:58539506-58539525 | Msa0128710:CDS | 40.0% |
| CAATGTTGCCCCAAAAATGA+CGG | + | chr1_3:58539518-58539537 | None:intergenic | 40.0% | |
| !! | ACTTTTCTGAAAGAAGTGGG+TGG | - | chr1_3:58539580-58539599 | Msa0128710:intron | 40.0% |
| AACAGATCAAGATGCAGCAA+TGG | - | chr1_3:58539624-58539643 | Msa0128710:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | - | chr1_3:58539677-58539696 | Msa0128710:intron | 40.0% |
| AAAGAGTTCGCGATTCCATT+TGG | - | chr1_3:58539744-58539763 | Msa0128710:intron | 40.0% | |
| AGCATGCATAGATCTAGATG+AGG | - | chr1_3:58539774-58539793 | Msa0128710:intron | 40.0% | |
| ATGCATAGATCTAGATGAGG+AGG | - | chr1_3:58539777-58539796 | Msa0128710:intron | 40.0% | |
| GCATAAAAGGAGGTGAAAGA+AGG | - | chr1_3:58540202-58540221 | Msa0128710:intron | 40.0% | |
| TGCAAAGGAGAAGATGGTAA+TGG | - | chr1_3:58540252-58540271 | Msa0128710:intron | 40.0% | |
| GCAAAGGAGAAGATGGTAAT+GGG | - | chr1_3:58540253-58540272 | Msa0128710:intron | 40.0% | |
| !! | GATGGTAATGGGAAATCCTA+TGG | - | chr1_3:58540264-58540283 | Msa0128710:intron | 40.0% |
| GAAGTAATCAAGGTTGGAGT+GGG | - | chr1_3:58540431-58540450 | Msa0128710:intron | 40.0% | |
| AAAAAGCCCATTTCACGAAG+CGG | - | chr1_3:58540473-58540492 | Msa0128710:intron | 40.0% | |
| ATTGTACCGCTTCGTGAAAT+GGG | + | chr1_3:58540482-58540501 | None:intergenic | 40.0% | |
| TATCTGGATGGAGAATCAAG+TGG | - | chr1_3:58540625-58540644 | Msa0128710:CDS | 40.0% | |
| ! | TATGCATTTTGCCTTGCCAA+CGG | + | chr1_3:58540707-58540726 | None:intergenic | 40.0% |
| TGACAAAAGACGTCAACCGA+CGG | - | chr1_3:58538927-58538946 | Msa0128710:CDS | 45.0% | |
| AGCTCAACATAACCACCTTC+TGG | - | chr1_3:58539044-58539063 | Msa0128710:intron | 45.0% | |
| TATATCCAAGCAAGCTGGTG+GGG | - | chr1_3:58539183-58539202 | Msa0128710:intron | 45.0% | |
| CGACCTTTGGGTGTATTTGT+TGG | - | chr1_3:58539472-58539491 | Msa0128710:CDS | 45.0% | |
| !! | CACAGGCAAACCGTCATTTT+TGG | - | chr1_3:58539505-58539524 | Msa0128710:CDS | 45.0% |
| !!! | CAGGCAAACCGTCATTTTTG+GGG | - | chr1_3:58539507-58539526 | Msa0128710:CDS | 45.0% |
| GTTCGAAAAACATTCACGGC+AGG | - | chr1_3:58539910-58539929 | Msa0128710:intron | 45.0% | |
| AACGATGGACAAGAGATGCA+AGG | - | chr1_3:58540404-58540423 | Msa0128710:intron | 45.0% | |
| GGAAGTAATCAAGGTTGGAG+TGG | - | chr1_3:58540430-58540449 | Msa0128710:intron | 45.0% | |
| !! | GCTTCGTGAAATGGGCTTTT+TGG | + | chr1_3:58540474-58540493 | None:intergenic | 45.0% |
| CATTGTACCGCTTCGTGAAA+TGG | + | chr1_3:58540483-58540502 | None:intergenic | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | - | chr1_3:58540630-58540649 | Msa0128710:CDS | 45.0% | |
| GACAACAACATAGACACCGT+TGG | - | chr1_3:58540688-58540707 | Msa0128710:CDS | 45.0% | |
| TGACAAAAGACGTCAACCGA+CGG | - | chr1_3:58538927-58538946 | Msa0128710:CDS | 45.0% | |
| AGCTCAACATAACCACCTTC+TGG | - | chr1_3:58539044-58539063 | Msa0128710:intron | 45.0% | |
| TATATCCAAGCAAGCTGGTG+GGG | - | chr1_3:58539183-58539202 | Msa0128710:intron | 45.0% | |
| CGACCTTTGGGTGTATTTGT+TGG | - | chr1_3:58539472-58539491 | Msa0128710:CDS | 45.0% | |
| !! | CACAGGCAAACCGTCATTTT+TGG | - | chr1_3:58539505-58539524 | Msa0128710:CDS | 45.0% |
| !!! | CAGGCAAACCGTCATTTTTG+GGG | - | chr1_3:58539507-58539526 | Msa0128710:CDS | 45.0% |
| GTTCGAAAAACATTCACGGC+AGG | - | chr1_3:58539910-58539929 | Msa0128710:intron | 45.0% | |
| AACGATGGACAAGAGATGCA+AGG | - | chr1_3:58540404-58540423 | Msa0128710:intron | 45.0% | |
| GGAAGTAATCAAGGTTGGAG+TGG | - | chr1_3:58540430-58540449 | Msa0128710:intron | 45.0% | |
| !! | GCTTCGTGAAATGGGCTTTT+TGG | + | chr1_3:58540474-58540493 | None:intergenic | 45.0% |
| CATTGTACCGCTTCGTGAAA+TGG | + | chr1_3:58540483-58540502 | None:intergenic | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | - | chr1_3:58540630-58540649 | Msa0128710:CDS | 45.0% | |
| GACAACAACATAGACACCGT+TGG | - | chr1_3:58540688-58540707 | Msa0128710:CDS | 45.0% | |
| CATACTCAGGTGGAACCAGA+AGG | + | chr1_3:58539062-58539081 | None:intergenic | 50.0% | |
| ATGGACAAGAGATGCAAGGC+TGG | - | chr1_3:58540408-58540427 | Msa0128710:intron | 50.0% | |
| TGGACAAGAGATGCAAGGCT+GGG | - | chr1_3:58540409-58540428 | Msa0128710:intron | 50.0% | |
| GCAAGGCTGGGAAGTAATCA+AGG | - | chr1_3:58540421-58540440 | Msa0128710:intron | 50.0% | |
| GGCTGGGAAGTAATCAAGGT+TGG | - | chr1_3:58540425-58540444 | Msa0128710:intron | 50.0% | |
| GTAATCAAGGTTGGAGTGGG+AGG | - | chr1_3:58540434-58540453 | Msa0128710:intron | 50.0% | |
| CAACATAGACACCGTTGGCA+AGG | - | chr1_3:58540693-58540712 | Msa0128710:CDS | 50.0% | |
| CATACTCAGGTGGAACCAGA+AGG | + | chr1_3:58539062-58539081 | None:intergenic | 50.0% | |
| ATGGACAAGAGATGCAAGGC+TGG | - | chr1_3:58540408-58540427 | Msa0128710:intron | 50.0% | |
| TGGACAAGAGATGCAAGGCT+GGG | - | chr1_3:58540409-58540428 | Msa0128710:intron | 50.0% | |
| GCAAGGCTGGGAAGTAATCA+AGG | - | chr1_3:58540421-58540440 | Msa0128710:intron | 50.0% | |
| GGCTGGGAAGTAATCAAGGT+TGG | - | chr1_3:58540425-58540444 | Msa0128710:intron | 50.0% | |
| GTAATCAAGGTTGGAGTGGG+AGG | - | chr1_3:58540434-58540453 | Msa0128710:intron | 50.0% | |
| CAACATAGACACCGTTGGCA+AGG | - | chr1_3:58540693-58540712 | Msa0128710:CDS | 50.0% | |
| CAAAAGACGTCAACCGACGG+CGG | - | chr1_3:58538930-58538949 | Msa0128710:CDS | 55.0% | |
| ! | TCTGCTTTAGACTCCGCCGT+CGG | + | chr1_3:58538946-58538965 | None:intergenic | 55.0% |
| AACAGGATGCACAGCGCGTA+TGG | - | chr1_3:58538972-58538991 | Msa0128710:CDS | 55.0% | |
| ACTCAGGTGGAACCAGAAGG+TGG | + | chr1_3:58539059-58539078 | None:intergenic | 55.0% | |
| CAAAAGACGTCAACCGACGG+CGG | - | chr1_3:58538930-58538949 | Msa0128710:CDS | 55.0% | |
| ! | TCTGCTTTAGACTCCGCCGT+CGG | + | chr1_3:58538946-58538965 | None:intergenic | 55.0% |
| AACAGGATGCACAGCGCGTA+TGG | - | chr1_3:58538972-58538991 | Msa0128710:CDS | 55.0% | |
| ACTCAGGTGGAACCAGAAGG+TGG | + | chr1_3:58539059-58539078 | None:intergenic | 55.0% | |
| ACGCGCTGTGCATCCTGTTC+TGG | + | chr1_3:58538971-58538990 | None:intergenic | 60.0% | |
| ! | CTCTACCCCACCAGCTTGCT+TGG | + | chr1_3:58539191-58539210 | None:intergenic | 60.0% |
| GCTGGTGGGGTAGAGACTGT+CGG | - | chr1_3:58539196-58539215 | Msa0128710:intron | 60.0% | |
| ACGCGCTGTGCATCCTGTTC+TGG | + | chr1_3:58538971-58538990 | None:intergenic | 60.0% | |
| ! | CTCTACCCCACCAGCTTGCT+TGG | + | chr1_3:58539191-58539210 | None:intergenic | 60.0% |
| GCTGGTGGGGTAGAGACTGT+CGG | - | chr1_3:58539196-58539215 | Msa0128710:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58538820 | 58540747 | 58538820 | ID=Msa0128710;Name=Msa0128710 |
| chr1_3 | mRNA | 58538820 | 58540747 | 58538820 | ID=Msa0128710-mRNA-1;Parent=Msa0128710;Name=Msa0128710-mRNA-1;_AED=0.31;_eAED=0.39;_QI=0|0|0|1|0.25|0|5|0|229 |
| chr1_3 | exon | 58540538 | 58540747 | 58540538 | ID=Msa0128710-mRNA-1:exon:18831;Parent=Msa0128710-mRNA-1 |
| chr1_3 | exon | 58539704 | 58539710 | 58539704 | ID=Msa0128710-mRNA-1:exon:18830;Parent=Msa0128710-mRNA-1 |
| chr1_3 | exon | 58539636 | 58539678 | 58539636 | ID=Msa0128710-mRNA-1:exon:18829;Parent=Msa0128710-mRNA-1 |
| chr1_3 | exon | 58539340 | 58539535 | 58539340 | ID=Msa0128710-mRNA-1:exon:18828;Parent=Msa0128710-mRNA-1 |
| chr1_3 | exon | 58538820 | 58539050 | 58538820 | ID=Msa0128710-mRNA-1:exon:18827;Parent=Msa0128710-mRNA-1 |
| chr1_3 | CDS | 58540538 | 58540747 | 58540538 | ID=Msa0128710-mRNA-1:cds;Parent=Msa0128710-mRNA-1 |
| chr1_3 | CDS | 58539704 | 58539710 | 58539704 | ID=Msa0128710-mRNA-1:cds;Parent=Msa0128710-mRNA-1 |
| chr1_3 | CDS | 58539636 | 58539678 | 58539636 | ID=Msa0128710-mRNA-1:cds;Parent=Msa0128710-mRNA-1 |
| chr1_3 | CDS | 58539340 | 58539535 | 58539340 | ID=Msa0128710-mRNA-1:cds;Parent=Msa0128710-mRNA-1 |
| chr1_3 | CDS | 58538820 | 58539050 | 58538820 | ID=Msa0128710-mRNA-1:cds;Parent=Msa0128710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
