AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0129390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129390 MtrunA17_Chr1g0197591 96.774 1054 30 1 1 1054 1 1050 0.0 2105
Msa0129390 MtrunA17_Chr1g0194741 68.161 647 179 11 3 627 10 651 0.0 839
Msa0129390 MtrunA17_Chr1g0194731 50.219 456 185 10 628 1049 1 448 2.72e-119 374
Msa0129390 MtrunA17_Chr8g0343551 90.476 84 6 1 972 1053 3 86 2.16e-48 166
Msa0129390 MtrunA17_Chr8g0371601 30.297 472 298 11 197 653 280 735 3.11e-43 171
Msa0129390 MtrunA17_Chr8g0371601 38.356 146 72 5 913 1040 1008 1153 6.67e-17 86.3
Msa0129390 MtrunA17_Chr5g0405701 32.808 381 234 9 280 653 408 773 4.14e-42 167
Msa0129390 MtrunA17_Chr5g0405701 38.129 139 63 5 925 1040 1045 1183 1.46e-15 82.0
Msa0129390 MtrunA17_Chr4g0018501 84.848 66 10 0 795 860 1 66 1.18e-33 125
Msa0129390 MtrunA17_Chr8g0377481 28.080 349 213 10 367 693 381 713 3.53e-24 109
Msa0129390 MtrunA17_Chr8g0377481 39.231 130 62 4 930 1049 841 963 1.53e-15 82.0
Msa0129390 MtrunA17_Chr3g0122391 26.590 346 201 12 335 653 399 718 1.23e-21 101
Msa0129390 MtrunA17_Chr3g0122391 32.143 224 98 8 837 1049 840 1020 8.19e-17 85.9
Msa0129390 MtrunA17_Chr8g0392301 26.359 368 224 13 328 662 335 688 2.51e-21 100
Msa0129390 MtrunA17_Chr8g0392301 37.857 140 63 4 927 1049 858 990 1.44e-15 82.0
Msa0129390 MtrunA17_Chr5g0447641 25.948 343 227 9 335 662 576 906 5.40e-20 96.7
Msa0129390 MtrunA17_Chr5g0447641 32.768 177 89 5 896 1049 1039 1208 4.57e-14 77.4
Msa0129390 MtrunA17_Chr3g0136601 29.430 316 180 12 363 648 344 646 1.25e-19 95.1
Msa0129390 MtrunA17_Chr4g0013831 27.760 317 181 11 368 675 334 611 3.08e-16 84.0
Msa0129390 MtrunA17_Chr1g0150511 25.337 371 201 14 337 648 328 681 1.40e-15 82.0
Msa0129390 MtrunA17_Chr7g0269631 25.914 301 179 9 368 662 334 596 7.34e-15 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129390 AT2G47430.1 38.767 1135 568 29 1 1042 9 1109 0.0 673
Msa0129390 AT2G17820.1 30.021 473 296 12 197 653 309 762 1.30e-41 167
Msa0129390 AT2G01830.2 27.548 363 221 11 322 656 414 762 5.07e-26 116
Msa0129390 AT2G01830.2 37.415 147 72 5 916 1049 928 1067 3.97e-14 77.8
Msa0129390 AT2G01830.5 26.720 378 235 11 322 671 403 766 6.07e-26 116
Msa0129390 AT2G01830.5 37.415 147 72 5 916 1049 917 1056 4.77e-14 77.4
Msa0129390 AT2G01830.1 27.548 363 221 11 322 656 391 739 7.37e-26 115
Msa0129390 AT2G01830.1 37.415 147 72 5 916 1049 905 1044 4.54e-14 77.8
Msa0129390 AT2G01830.4 27.548 363 221 11 322 656 391 739 7.37e-26 115
Msa0129390 AT2G01830.4 37.415 147 72 5 916 1049 905 1044 4.54e-14 77.8
Msa0129390 AT2G01830.6 27.548 363 221 11 322 656 391 739 7.37e-26 115
Msa0129390 AT2G01830.6 37.415 147 72 5 916 1049 905 1044 4.54e-14 77.8
Msa0129390 AT2G01830.3 27.548 363 221 11 322 656 391 739 7.37e-26 115
Msa0129390 AT2G01830.3 37.415 147 72 5 916 1049 905 1044 4.54e-14 77.8
Msa0129390 AT1G27320.1 30.233 301 185 9 364 653 436 722 3.84e-25 113
Msa0129390 AT1G27320.1 35.135 148 66 4 930 1054 890 1030 9.12e-14 76.6
Msa0129390 AT5G35750.1 26.667 375 233 11 328 681 539 892 9.15e-23 105
Msa0129390 AT5G35750.1 34.694 147 63 4 927 1049 1032 1169 2.83e-14 78.2
Msa0129390 AT5G10720.1 25.733 307 169 10 363 648 340 608 7.67e-17 86.7
Msa0129390 AT1G66340.1 24.746 295 174 7 368 656 333 585 5.26e-15 80.5
Msa0129390 AT2G40940.1 25.552 317 190 10 352 659 313 592 4.93e-14 77.0

Find 186 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAAGGCCTTTCTTGAATT+TGG 0.083331 1_3:-59303719 None:intergenic
TCCTTATGATTACATCTTAA+TGG 0.135791 1_3:+59304149 Msa0129390:CDS
TGATGTGAGTTACAAGAAAA+TGG 0.185737 1_3:+59301979 Msa0129390:CDS
CACAGACTTGGAATTCTCTT+TGG 0.196997 1_3:-59302899 None:intergenic
ATCCTCCATTTGGATTAAAT+TGG 0.203253 1_3:-59302272 None:intergenic
CTGCTCCCCGATTGATATAT+TGG 0.222353 1_3:+59301295 Msa0129390:CDS
ATGATACTTGTTGCTGTCTT+AGG 0.234879 1_3:+59302031 Msa0129390:CDS
TTTAGGAACGAGCACGTATT+TGG 0.254445 1_3:+59301082 Msa0129390:CDS
CTCACATCAAATCCATTTCT+TGG 0.263424 1_3:-59301965 None:intergenic
ATTTGATTTATCTCATTTCT+TGG 0.272378 1_3:+59302486 Msa0129390:CDS
CTCAAATTGGAAGAGGATTC+TGG 0.275494 1_3:-59303508 None:intergenic
ACAAGATCCAACGCGTTCTA+TGG 0.281119 1_3:+59302837 Msa0129390:CDS
TTCAAATGAATTTGCCTCAT+TGG 0.284914 1_3:+59300935 Msa0129390:CDS
CTCCATTTGCATTCACTGAT+TGG 0.289733 1_3:-59301181 None:intergenic
CGAATTCTTGTAACGTTGTT+TGG 0.301669 1_3:+59303740 Msa0129390:CDS
CAAATGCATTTCTCTCCTTA+TGG 0.302990 1_3:-59302077 None:intergenic
TAGTTGTTGAAGGTCTAAAA+AGG 0.303377 1_3:+59304112 Msa0129390:CDS
GAGCTTAGGGATTAAAGTTA+AGG 0.303708 1_3:+59303405 Msa0129390:CDS
ATTGTTTCATGAAACTATTT+TGG 0.307830 1_3:-59302744 None:intergenic
GACAAGAATATTGGTGAAAA+AGG 0.315509 1_3:+59303115 Msa0129390:CDS
TTTGTCTATCGTGATCTTAC+TGG 0.322255 1_3:+59300201 Msa0129390:CDS
AAACATTTGTTGTAGGCATA+TGG 0.326808 1_3:+59300311 Msa0129390:intron
TGTGATAGCGACAAATATAT+TGG 0.330402 1_3:+59304035 Msa0129390:CDS
GTTACTCGTGTCAACCGTTT+AGG 0.332813 1_3:+59301065 Msa0129390:CDS
TGAATTTCTCCTTGATGAAC+AGG 0.334685 1_3:-59303934 None:intergenic
TGCTCCCCGATTGATATATT+GGG 0.349935 1_3:+59301296 Msa0129390:CDS
ACTTGGAATTGTGCAGTCTT+TGG 0.354283 1_3:+59302981 Msa0129390:CDS
ACAGACTTGGAATTCTCTTT+GGG 0.355532 1_3:-59302898 None:intergenic
TTTGTTGATGATGATTTCAT+TGG 0.365304 1_3:-59300473 None:intergenic
CTTGTGTACAATCCTCCATT+TGG 0.365899 1_3:-59302282 None:intergenic
GAAATTGTGGACAAGAATAT+TGG 0.368908 1_3:+59303106 Msa0129390:CDS
TCAAATGAATTTGCCTCATT+GGG 0.369330 1_3:+59300936 Msa0129390:CDS
GATAGAAGAGTTTGATACTA+TGG 0.369862 1_3:-59300880 None:intergenic
AAAAGGTTTATGAAGAGCTT+AGG 0.371564 1_3:+59303391 Msa0129390:CDS
ATGTAATCATAAGGAGGATT+AGG 0.374287 1_3:-59304141 None:intergenic
CATCCTGTGAATAATGAAAC+TGG 0.381354 1_3:+59300840 Msa0129390:CDS
GGCTTCCAATTTAATCCAAA+TGG 0.382144 1_3:+59302267 Msa0129390:CDS
GATGTGAGTTACAAGAAAAT+GGG 0.384033 1_3:+59301980 Msa0129390:CDS
AGTTCCCTCTGGTTCAGAAT+TGG 0.385854 1_3:+59302246 Msa0129390:CDS
TCTGCACTTAATGCAATGAT+AGG 0.386989 1_3:-59304387 None:intergenic
AAGCCTGTTCCTTCTTGAAC+AGG 0.387245 1_3:-59302955 None:intergenic
CTTCTTCCTGAGTATGATAA+TGG 0.388629 1_3:+59303868 Msa0129390:CDS
GGAATGAGAAGAACTCAAAT+TGG 0.393399 1_3:-59303521 None:intergenic
GAAGAGGATTCTGGAGAACT+TGG 0.394078 1_3:-59303499 None:intergenic
TATGTTTCAGGTGTATGTTT+TGG 0.398667 1_3:+59301937 Msa0129390:intron
TACAAATGAAGGACACATTA+CGG 0.399866 1_3:+59302669 Msa0129390:CDS
GACACATTACGGTTCGAGCT+TGG 0.407216 1_3:+59302680 Msa0129390:CDS
ACATTTGAAGTTGATGATAC+AGG 0.407290 1_3:+59302865 Msa0129390:CDS
CAGAAGGGCCGCCGTTCAAA+TGG 0.416572 1_3:+59303475 Msa0129390:CDS
AGGGATTCAACATATTCGTT+TGG 0.417204 1_3:+59301133 Msa0129390:CDS
ACAAGGGAAGGTCTTGAGTA+TGG 0.419546 1_3:+59303202 Msa0129390:CDS
GATAGATCGACGACGGTGAC+TGG 0.419905 1_3:+59304414 Msa0129390:CDS
AACATTTGTTGTAGGCATAT+GGG 0.423726 1_3:+59300312 Msa0129390:intron
TCTATTCCCAATATATCAAT+CGG 0.425923 1_3:-59301302 None:intergenic
AAAGGTTTATGAAGAGCTTA+GGG 0.426716 1_3:+59303392 Msa0129390:CDS
AACAAACGACTACCGTGAAA+TGG 0.429963 1_3:-59303832 None:intergenic
ACACATTACGGTTCGAGCTT+GGG 0.431209 1_3:+59302681 Msa0129390:CDS
GAAGTTGATGATACAGGAAA+AGG 0.435566 1_3:+59302871 Msa0129390:CDS
GGCTTTATTGAATGTAATGT+TGG 0.438372 1_3:+59302006 Msa0129390:CDS
CTTGTATTGGACCCTTGTAA+TGG 0.450377 1_3:+59302559 Msa0129390:CDS
GCTGTCAAATTTACAAATGA+AGG 0.451337 1_3:+59302658 Msa0129390:CDS
AATACGTGCTCGTTCCTAAA+CGG 0.454299 1_3:-59301079 None:intergenic
TTCCAATCAGTGAATGCAAA+TGG 0.454437 1_3:+59301179 Msa0129390:CDS
TCATCTAAGTTAGTTCCCTC+TGG 0.459240 1_3:+59302235 Msa0129390:CDS
CGAGAGATGGAGAAGCCGTT+TGG 0.461495 1_3:+59304354 Msa0129390:CDS
ATCTCATTTCTTGGAAGAAG+TGG 0.466158 1_3:+59302495 Msa0129390:CDS
CATATGATACATGGGACTCA+TGG 0.467130 1_3:-59303293 None:intergenic
AATCCTGTTCAAGAAGGAAC+AGG 0.468359 1_3:+59302952 Msa0129390:CDS
ATAAAATATTCGCGCGTGAA+AGG 0.472344 1_3:+59302589 Msa0129390:CDS
TTCTTGTAACGTTGTTTGGT+TGG 0.473169 1_3:+59303744 Msa0129390:CDS
CATCTTGTGGCGATGGAGAA+AGG 0.473755 1_3:+59302529 Msa0129390:CDS
TCTGCTAGAGTCAACAGAAT+AGG 0.474421 1_3:+59300999 Msa0129390:CDS
TCCATTAAGATGTAATCATA+AGG 0.475010 1_3:-59304150 None:intergenic
AGCGTCGGAGGACTTGTAAA+AGG 0.476600 1_3:+59303374 Msa0129390:CDS
ATTATTGAGCTACTTAATGT+TGG 0.477791 1_3:-59302712 None:intergenic
GAAGGAACAGGCTTAGGACT+TGG 0.480156 1_3:+59302964 Msa0129390:CDS
GCTGTAATGCTAGTTGTTGA+AGG 0.480832 1_3:+59304102 Msa0129390:CDS
AGAATAGGAGTGATCTCTCT+TGG 0.481729 1_3:+59301014 Msa0129390:CDS
ACAAATATATTGGTTTCGCT+TGG 0.481740 1_3:+59304045 Msa0129390:CDS
TTACGGTTCGAGCTTGGGCT+CGG 0.484471 1_3:+59302686 Msa0129390:CDS
AGATGTGATTAAGAATTATG+AGG 0.485311 1_3:+59301202 Msa0129390:CDS
GTTCAAGAAGGAACAGGCTT+AGG 0.486350 1_3:+59302958 Msa0129390:CDS
ATCTCATACATTGGAATGGA+AGG 0.489108 1_3:+59300732 Msa0129390:CDS
TTGACTCAAATCTCATACAT+TGG 0.489772 1_3:+59300723 Msa0129390:CDS
ATATGTGCAACTCTAGTCCT+AGG 0.493698 1_3:+59303311 Msa0129390:CDS
ATCATGTCCATTGGTCCACT+TGG 0.496324 1_3:-59300961 None:intergenic
TTACATCTTAATGGATTGCC+AGG 0.496712 1_3:+59304158 Msa0129390:CDS
GAAAGGTGTAGATCTTGTAT+TGG 0.497817 1_3:+59302546 Msa0129390:CDS
TTTCCAGTTTCATTATTCAC+AGG 0.508194 1_3:-59300843 None:intergenic
CTATTCCCAATATATCAATC+GGG 0.511465 1_3:-59301301 None:intergenic
GATGGACAAATTCTTGTGGA+AGG 0.513671 1_3:+59301113 Msa0129390:CDS
AGAAGTGCGAACGTCATGGC+TGG 0.516137 1_3:-59302182 None:intergenic
ACGTATTTGGCTACAAAAGA+TGG 0.516355 1_3:+59301095 Msa0129390:CDS
ATTGTATCCAAATTCAAGAA+AGG 0.518521 1_3:+59303712 Msa0129390:CDS
GTTTCATGAAACAATTGTCA+TGG 0.521499 1_3:+59302752 Msa0129390:CDS
GGTCCACTTGGTTCCCAATG+AGG 0.522253 1_3:-59300949 None:intergenic
ACTGTCGAGCAATGTGAGAA+TGG 0.524357 1_3:+59304072 Msa0129390:CDS
CAACAGATGCCGGTGATGGA+TGG 0.525744 1_3:+59304309 Msa0129390:intron
GTCGTATCGAAACCATTTCA+CGG 0.526830 1_3:+59303820 Msa0129390:CDS
ATAGGAATGCGAACACCAAA+CGG 0.527627 1_3:-59304369 None:intergenic
AATTCAACAGATGCCGGTGA+TGG 0.528229 1_3:+59304305 Msa0129390:intron
TTATAGATGGTAGAGCCATA+AGG 0.528325 1_3:+59302062 Msa0129390:CDS
GATTGTACACAAGACTTACT+AGG 0.531693 1_3:+59302292 Msa0129390:CDS
ATTGTCATCGATGCAAATGC+AGG 0.532933 1_3:+59303664 Msa0129390:CDS
GACGTTCGCACTTCTCTCGC+AGG 0.533286 1_3:+59302190 Msa0129390:CDS
TTGTAGGTACGTTTGATGCA+TGG 0.535200 1_3:+59303076 Msa0129390:intron
ACACGGGATGCCTCGAGCCT+AGG 0.535731 1_3:-59303328 None:intergenic
ACTCTTCTATCAGCACAAGT+TGG 0.535758 1_3:+59300892 Msa0129390:CDS
CAGGAAGAAGCATTATGACT+TGG 0.536418 1_3:-59303855 None:intergenic
AGAAGAACTCAAATTGGAAG+AGG 0.537572 1_3:-59303515 None:intergenic
ATTCGCGCGTGAAAGGCGAC+AGG 0.538594 1_3:+59302596 Msa0129390:CDS
ATCGACGACGGTGACTGGAA+TGG 0.539077 1_3:+59304419 Msa0129390:CDS
AGTTCCATCCATAAAACTCA+AGG 0.539190 1_3:-59303581 None:intergenic
GATGTGATTAAGAATTATGA+GGG 0.539902 1_3:+59301203 Msa0129390:CDS
TTCCAATTTAATCCAAATGG+AGG 0.540948 1_3:+59302270 Msa0129390:CDS
GCCTCAAATCCATCCATCAC+CGG 0.541835 1_3:-59304318 None:intergenic
ATGGACAAATTCTTGTGGAA+GGG 0.543331 1_3:+59301114 Msa0129390:CDS
TCAAATCTCATACATTGGAA+TGG 0.544839 1_3:+59300728 Msa0129390:CDS
CAGTTTCATTATTCACAGGA+TGG 0.545697 1_3:-59300839 None:intergenic
ACATTTGTTGTAGGCATATG+GGG 0.546061 1_3:+59300313 Msa0129390:intron
TTTCTCTGATATTGAAACCA+AGG 0.546211 1_3:+59300541 Msa0129390:CDS
AGAAAATGAATTATGAGATG+TGG 0.547864 1_3:-59303542 None:intergenic
GCCGGTGATGGATGGATTTG+AGG 0.548468 1_3:+59304317 Msa0129390:CDS
GCATGGAGATATTGAAATTG+TGG 0.549187 1_3:+59303093 Msa0129390:CDS
GAATCAATACGATGCATATG+TGG 0.550547 1_3:-59303772 None:intergenic
TTTATAACAGAACCATTACA+AGG 0.553983 1_3:-59302571 None:intergenic
AGTATGATAATGGTAGTGTT+TGG 0.554698 1_3:+59303878 Msa0129390:CDS
ATAATTCTCAAACACAGACT+TGG 0.555719 1_3:-59302911 None:intergenic
AGAGTTGCACATATGATACA+TGG 0.556428 1_3:-59303302 None:intergenic
TATATACCATCTTGTGGCGA+TGG 0.557526 1_3:+59302522 Msa0129390:CDS
TTGGGAACCAAGTGGACCAA+TGG 0.558410 1_3:+59300954 Msa0129390:CDS
GAGAACTTGGGCCATTTGAA+CGG 0.559857 1_3:-59303486 None:intergenic
AAACAAAAGATCATGTCCAT+TGG 0.562534 1_3:-59300970 None:intergenic
TTAACTGTTTAAGATTCTGA+CGG 0.563333 1_3:-59304487 None:intergenic
AGAAATTCTCCTGTTCATCA+AGG 0.565013 1_3:+59303925 Msa0129390:CDS
GAGTTACAAGAAAATGGGAT+TGG 0.568699 1_3:+59301985 Msa0129390:CDS
GAAACTAATCCTGTTCAAGA+AGG 0.570961 1_3:+59302946 Msa0129390:CDS
ACTAGACACAAGCAAAATTG+AGG 0.572699 1_3:+59302435 Msa0129390:CDS
GTGAAATCCATAGAACGCGT+TGG 0.576302 1_3:-59302844 None:intergenic
TTGGAAATGTGGAGCGTCGG+AGG 0.583114 1_3:+59303362 Msa0129390:CDS
AAAAGATGGACAAATTCTTG+TGG 0.588307 1_3:+59301109 Msa0129390:CDS
ACAGGAGAATTTCTAGTGTG+AGG 0.588515 1_3:-59303916 None:intergenic
CTTTCTCCATCGCCACAAGA+TGG 0.589569 1_3:-59302528 None:intergenic
CGAGAGAAGTGCGAACGTCA+TGG 0.591973 1_3:-59302186 None:intergenic
TTATCTCGTTGACACCATGC+TGG 0.594525 1_3:+59300348 Msa0129390:CDS
AAGAGGATTCTGGAGAACTT+GGG 0.597755 1_3:-59303498 None:intergenic
ACACTACCATTATCATACTC+AGG 0.600924 1_3:-59303874 None:intergenic
GTCATGGCTGGCACTAGCAA+CGG 0.603318 1_3:-59302170 None:intergenic
TCATTGGAAATGTGGAGCGT+CGG 0.606149 1_3:+59303359 Msa0129390:CDS
TCCAATGAAAAGAACAACAC+GGG 0.606205 1_3:-59303344 None:intergenic
GGAGAAATTCAAGAATGTGA+AGG 0.608260 1_3:+59303946 Msa0129390:CDS
TCTAGAGGAGATCAAACAGA+AGG 0.608517 1_3:+59303459 Msa0129390:CDS
TGAGGGTACTGTCTCATGCA+AGG 0.611372 1_3:+59301220 Msa0129390:CDS
AGATCTGTTTGATACTCTAG+AGG 0.614609 1_3:+59303444 Msa0129390:CDS
GGTTGATATATACCATCTTG+TGG 0.620294 1_3:+59302516 Msa0129390:CDS
TTCGCGCGTGAAAGGCGACA+GGG 0.625927 1_3:+59302597 Msa0129390:CDS
CAACGTTACAAGAATTCGAA+AGG 0.626525 1_3:-59303735 None:intergenic
AACAATGCGGATACGAGAGA+TGG 0.628920 1_3:+59304341 Msa0129390:CDS
AACTTGGGCCATTTGAACGG+CGG 0.630375 1_3:-59303483 None:intergenic
GGCTGGCACTAGCAACGGCG+AGG 0.632573 1_3:-59302165 None:intergenic
GTTCCATCCATAAAACTCAA+GGG 0.632815 1_3:-59303580 None:intergenic
ATATATCAATCGGGGAGCAG+CGG 0.633343 1_3:-59301292 None:intergenic
CAACTCTAGTCCTAGGCTCG+AGG 0.638163 1_3:+59303318 Msa0129390:CDS
TCAAATGCTTCAAATAACAG+TGG 0.638167 1_3:-59300687 None:intergenic
ACTAGAACTAGTAGCATGAG+TGG 0.643851 1_3:-59303257 None:intergenic
CTAGAGGAGATCAAACAGAA+GGG 0.647360 1_3:+59303460 Msa0129390:CDS
ATTAAGATGTAATCATAAGG+AGG 0.648788 1_3:-59304147 None:intergenic
TTGCCTCATTGGGAACCAAG+TGG 0.650600 1_3:+59300946 Msa0129390:CDS
AGTAACAGTACTCAAGCTCG+AGG 0.651523 1_3:+59303229 Msa0129390:CDS
GACACAAGCAAAATTGAGGT+AGG 0.651627 1_3:+59302439 Msa0129390:CDS
GGAAGCCAATTCTGAACCAG+AGG 0.652862 1_3:-59302251 None:intergenic
TTATAACAGAACCATTACAA+GGG 0.656687 1_3:-59302570 None:intergenic
TCGCGCGTGAAAGGCGACAG+GGG 0.658878 1_3:+59302598 Msa0129390:CDS
AGTAAGATCACGATAGACAA+AGG 0.658954 1_3:-59300199 None:intergenic
GAGTTGCACATATGATACAT+GGG 0.668509 1_3:-59303301 None:intergenic
TATTCCCAATATATCAATCG+GGG 0.669245 1_3:-59301300 None:intergenic
TATGAGATTTGAGTCAAGTG+AGG 0.675699 1_3:-59300717 None:intergenic
GACACCATGCTGGTATGTCA+TGG 0.678223 1_3:+59300358 Msa0129390:CDS
GAAGCCAATTCTGAACCAGA+GGG 0.678300 1_3:-59302250 None:intergenic
TTCCAATGAAAAGAACAACA+CGG 0.680092 1_3:-59303345 None:intergenic
GTAACAGTACTCAAGCTCGA+GGG 0.683337 1_3:+59303230 Msa0129390:CDS
TTTCACCTTCACATAAACTG+AGG 0.692804 1_3:-59303162 None:intergenic
GTGCTCCTCAGTTTATGTGA+AGG 0.712429 1_3:+59303157 Msa0129390:CDS
AGATATTGATAGATCGACGA+CGG 0.744930 1_3:+59304407 Msa0129390:CDS
GTTACCATGACATACCAGCA+TGG 0.776680 1_3:-59300362 None:intergenic
ATGGATTTGAGGCAACAATG+CGG 0.777417 1_3:+59304328 Msa0129390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATGATTAATCATTTTT+GGG - chr1_3:59301857-59301876 None:intergenic 10.0%
!!! ATAAAATGATTAATCATTTT+TGG - chr1_3:59301858-59301877 None:intergenic 10.0%
!! AATACTTTAAATTAAGTTAA+AGG + chr1_3:59302331-59302350 Msa0129390:intron 10.0%
!!! AAAATGATTAATCATTTTTG+GGG - chr1_3:59301856-59301875 None:intergenic 15.0%
!!! ATTTTCTTCTTATTTTTTGT+AGG + chr1_3:59303060-59303079 Msa0129390:intron 15.0%
!!! GATTTTAATGTTTGTTTTGT+AGG + chr1_3:59300659-59300678 Msa0129390:intron 20.0%
!!! ACTGATGTATTACAATTTTA+GGG - chr1_3:59301427-59301446 None:intergenic 20.0%
!!! AGTTGTCTATTATAATTTGT+TGG + chr1_3:59301552-59301571 Msa0129390:intron 20.0%
!!! GTTGTCTATTATAATTTGTT+GGG + chr1_3:59301553-59301572 Msa0129390:intron 20.0%
!! TTAACTATTGAACTTTATAG+AGG + chr1_3:59301744-59301763 Msa0129390:intron 20.0%
!! TAACTATTGAACTTTATAGA+GGG + chr1_3:59301745-59301764 Msa0129390:intron 20.0%
!! AAAAGATTAGAAGAATGAAT+AGG - chr1_3:59301784-59301803 None:intergenic 20.0%
!!! TTAGGTTTTCTATTTATAGA+TGG + chr1_3:59302049-59302068 Msa0129390:CDS 20.0%
!!! TTTGTTCATATTTTTTCTCT+CGG - chr1_3:59302143-59302162 None:intergenic 20.0%
!!! AACTTAATTTAAAGTATTCC+AGG - chr1_3:59302329-59302348 None:intergenic 20.0%
!!! ATTTGATTTATCTCATTTCT+TGG + chr1_3:59302486-59302505 Msa0129390:CDS 20.0%
!!! ATTGTTTCATGAAACTATTT+TGG - chr1_3:59302747-59302766 None:intergenic 20.0%
!!! TTTGTTATCTTTATCAAACT+TGG + chr1_3:59304223-59304242 Msa0129390:intron 20.0%
!! TTGTTATCTTTATCAAACTT+GGG + chr1_3:59304224-59304243 Msa0129390:intron 20.0%
! TAAACACATTCAGTGTATAA+GGG - chr1_3:59300289-59300308 None:intergenic 25.0%
! TTAAACACATTCAGTGTATA+AGG - chr1_3:59300290-59300309 None:intergenic 25.0%
!!! GTTTAACAAACATTTGTTGT+AGG + chr1_3:59300304-59300323 Msa0129390:intron 25.0%
!!! TTTGTTGATGATGATTTCAT+TGG - chr1_3:59300476-59300495 None:intergenic 25.0%
!! AATGAAACTGGAAAAGTTTT+TGG + chr1_3:59300852-59300871 Msa0129390:CDS 25.0%
! AGATGTGATTAAGAATTATG+AGG + chr1_3:59301202-59301221 Msa0129390:CDS 25.0%
! GATGTGATTAAGAATTATGA+GGG + chr1_3:59301203-59301222 Msa0129390:CDS 25.0%
! TCTATTCCCAATATATCAAT+CGG - chr1_3:59301305-59301324 None:intergenic 25.0%
!! GACTGATGTATTACAATTTT+AGG - chr1_3:59301428-59301447 None:intergenic 25.0%
! ATAATAGACAACTTCTTCTT+TGG - chr1_3:59301545-59301564 None:intergenic 25.0%
!!! TTTCTATTGGATTTTGGTTA+GGG - chr1_3:59301613-59301632 None:intergenic 25.0%
!!! TTTTCTATTGGATTTTGGTT+AGG - chr1_3:59301614-59301633 None:intergenic 25.0%
!! TACTTAACGTGATTTTCTAT+TGG - chr1_3:59301626-59301645 None:intergenic 25.0%
! GAAAATCACGTTAAGTAATA+TGG + chr1_3:59301629-59301648 Msa0129390:intron 25.0%
! CTCTAATTTGATTATGTTTC+AGG + chr1_3:59301925-59301944 Msa0129390:intron 25.0%
!! TTAATTTAAAGTATTCCAGG+TGG - chr1_3:59302326-59302345 None:intergenic 25.0%
! TTATAACAGAACCATTACAA+GGG - chr1_3:59302573-59302592 None:intergenic 25.0%
! TTTATAACAGAACCATTACA+AGG - chr1_3:59302574-59302593 None:intergenic 25.0%
! ATTATTGAGCTACTTAATGT+TGG - chr1_3:59302715-59302734 None:intergenic 25.0%
!!! TTTCATGAAACTATTTTGGT+TGG - chr1_3:59302743-59302762 None:intergenic 25.0%
! AGAAAATGAATTATGAGATG+TGG - chr1_3:59303545-59303564 None:intergenic 25.0%
!!! AATTCATTTTCTAGAGCTAA+AGG + chr1_3:59303553-59303572 Msa0129390:CDS 25.0%
!! AAATTCATCTTTTTGAACAC+TGG - chr1_3:59303619-59303638 None:intergenic 25.0%
!! GTGTTCAAAAAGATGAATTT+TGG + chr1_3:59303619-59303638 Msa0129390:CDS 25.0%
! ATTGTATCCAAATTCAAGAA+AGG + chr1_3:59303712-59303731 Msa0129390:CDS 25.0%
!!! GTCATTTTGATCAATTATTC+TGG - chr1_3:59303797-59303816 None:intergenic 25.0%
! ATTAAGATGTAATCATAAGG+AGG - chr1_3:59304150-59304169 None:intergenic 25.0%
! TCCTTATGATTACATCTTAA+TGG + chr1_3:59304149-59304168 Msa0129390:CDS 25.0%
! TCCATTAAGATGTAATCATA+AGG - chr1_3:59304153-59304172 None:intergenic 25.0%
! GATAAAGATAACAAAAGAAG+AGG - chr1_3:59304218-59304237 None:intergenic 25.0%
!! TTAACTGTTTAAGATTCTGA+CGG - chr1_3:59304490-59304509 None:intergenic 25.0%
ATTCAGTGTATAAGGGTTAA+TGG - chr1_3:59300282-59300301 None:intergenic 30.0%
!! AAACATTTGTTGTAGGCATA+TGG + chr1_3:59300311-59300330 Msa0129390:intron 30.0%
!! AACATTTGTTGTAGGCATAT+GGG + chr1_3:59300312-59300331 Msa0129390:intron 30.0%
TTTCTCTGATATTGAAACCA+AGG + chr1_3:59300541-59300560 Msa0129390:CDS 30.0%
TCAAATGCTTCAAATAACAG+TGG - chr1_3:59300690-59300709 None:intergenic 30.0%
TTGACTCAAATCTCATACAT+TGG + chr1_3:59300723-59300742 Msa0129390:CDS 30.0%
TCAAATCTCATACATTGGAA+TGG + chr1_3:59300728-59300747 Msa0129390:CDS 30.0%
TTTCCAGTTTCATTATTCAC+AGG - chr1_3:59300846-59300865 None:intergenic 30.0%
GATAGAAGAGTTTGATACTA+TGG - chr1_3:59300883-59300902 None:intergenic 30.0%
TTCAAATGAATTTGCCTCAT+TGG + chr1_3:59300935-59300954 Msa0129390:CDS 30.0%
TCAAATGAATTTGCCTCATT+GGG + chr1_3:59300936-59300955 Msa0129390:CDS 30.0%
AAACAAAAGATCATGTCCAT+TGG - chr1_3:59300973-59300992 None:intergenic 30.0%
AAAAGATGGACAAATTCTTG+TGG + chr1_3:59301109-59301128 Msa0129390:CDS 30.0%
TATTCCCAATATATCAATCG+GGG - chr1_3:59301303-59301322 None:intergenic 30.0%
CTATTCCCAATATATCAATC+GGG - chr1_3:59301304-59301323 None:intergenic 30.0%
! TCATAGATTAATTTGACCGA+TGG - chr1_3:59301381-59301400 None:intergenic 30.0%
! CGTGATTTTCTATTGGATTT+TGG - chr1_3:59301619-59301638 None:intergenic 30.0%
TGTAACTATGCGACTAAAAT+AGG + chr1_3:59301805-59301824 Msa0129390:intron 30.0%
!!! TATGCCATTTTATTTAGCAC+TGG + chr1_3:59301877-59301896 Msa0129390:intron 30.0%
!!! ATGCCATTTTATTTAGCACT+GGG + chr1_3:59301878-59301897 Msa0129390:intron 30.0%
!! TATGTTTCAGGTGTATGTTT+TGG + chr1_3:59301937-59301956 Msa0129390:intron 30.0%
TGATGTGAGTTACAAGAAAA+TGG + chr1_3:59301979-59301998 Msa0129390:CDS 30.0%
GATGTGAGTTACAAGAAAAT+GGG + chr1_3:59301980-59301999 Msa0129390:CDS 30.0%
!! GGCTTTATTGAATGTAATGT+TGG + chr1_3:59302006-59302025 Msa0129390:CDS 30.0%
!! CTCTTTTTGTTTGATAAGTG+AGG - chr1_3:59302107-59302126 None:intergenic 30.0%
CTCACTTATCAAACAAAAAG+AGG + chr1_3:59302105-59302124 Msa0129390:CDS 30.0%
TTCCAATTTAATCCAAATGG+AGG + chr1_3:59302270-59302289 Msa0129390:CDS 30.0%
ATCCTCCATTTGGATTAAAT+TGG - chr1_3:59302275-59302294 None:intergenic 30.0%
CAAAATTGAGGTAGGAAAAA+TGG + chr1_3:59302447-59302466 Msa0129390:CDS 30.0%
GCTGTCAAATTTACAAATGA+AGG + chr1_3:59302658-59302677 Msa0129390:CDS 30.0%
TACAAATGAAGGACACATTA+CGG + chr1_3:59302669-59302688 Msa0129390:CDS 30.0%
GTTTCATGAAACAATTGTCA+TGG + chr1_3:59302752-59302771 Msa0129390:CDS 30.0%
GAAAAAAAATGAACCAGATG+AGG + chr1_3:59302786-59302805 Msa0129390:CDS 30.0%
!! ACATTTGAAGTTGATGATAC+AGG + chr1_3:59302865-59302884 Msa0129390:CDS 30.0%
ATAATTCTCAAACACAGACT+TGG - chr1_3:59302914-59302933 None:intergenic 30.0%
GAAATTGTGGACAAGAATAT+TGG + chr1_3:59303106-59303125 Msa0129390:CDS 30.0%
GACAAGAATATTGGTGAAAA+AGG + chr1_3:59303115-59303134 Msa0129390:CDS 30.0%
! GTGAAAAAGGAACATGTTTT+CGG + chr1_3:59303128-59303147 Msa0129390:CDS 30.0%
TTCCAATGAAAAGAACAACA+CGG - chr1_3:59303348-59303367 None:intergenic 30.0%
! TGTTCTTTTCATTGGAAATG+TGG + chr1_3:59303351-59303370 Msa0129390:CDS 30.0%
AAAAGGTTTATGAAGAGCTT+AGG + chr1_3:59303391-59303410 Msa0129390:CDS 30.0%
AAAGGTTTATGAAGAGCTTA+GGG + chr1_3:59303392-59303411 Msa0129390:CDS 30.0%
! TCATCATTTTCTGAACTCTT+TGG + chr1_3:59303688-59303707 Msa0129390:CDS 30.0%
!! AGTATGATAATGGTAGTGTT+TGG + chr1_3:59303878-59303897 Msa0129390:CDS 30.0%
AAAAACTTCTTGCAATGCAA+AGG - chr1_3:59303988-59304007 None:intergenic 30.0%
! TGTGATAGCGACAAATATAT+TGG + chr1_3:59304035-59304054 Msa0129390:CDS 30.0%
!! ACAAATATATTGGTTTCGCT+TGG + chr1_3:59304045-59304064 Msa0129390:CDS 30.0%
TAGTTGTTGAAGGTCTAAAA+AGG + chr1_3:59304112-59304131 Msa0129390:CDS 30.0%
AGTTGTTGAAGGTCTAAAAA+GGG + chr1_3:59304113-59304132 Msa0129390:CDS 30.0%
ATGTAATCATAAGGAGGATT+AGG - chr1_3:59304144-59304163 None:intergenic 30.0%
! AGTAAATGCTCTTTTCTAAG+TGG - chr1_3:59304462-59304481 None:intergenic 30.0%
AGTAAGATCACGATAGACAA+AGG - chr1_3:59300202-59300221 None:intergenic 35.0%
TTTGTCTATCGTGATCTTAC+TGG + chr1_3:59300201-59300220 Msa0129390:CDS 35.0%
!! ACATTTGTTGTAGGCATATG+GGG + chr1_3:59300313-59300332 Msa0129390:intron 35.0%
TTCATGTTTGAAGAGAACCT+TGG - chr1_3:59300561-59300580 None:intergenic 35.0%
TATGAGATTTGAGTCAAGTG+AGG - chr1_3:59300720-59300739 None:intergenic 35.0%
ATCTCATACATTGGAATGGA+AGG + chr1_3:59300732-59300751 Msa0129390:CDS 35.0%
CAGTTTCATTATTCACAGGA+TGG - chr1_3:59300842-59300861 None:intergenic 35.0%
CATCCTGTGAATAATGAAAC+TGG + chr1_3:59300840-59300859 Msa0129390:CDS 35.0%
ACGTATTTGGCTACAAAAGA+TGG + chr1_3:59301095-59301114 Msa0129390:CDS 35.0%
ATGGACAAATTCTTGTGGAA+GGG + chr1_3:59301114-59301133 Msa0129390:CDS 35.0%
AGGGATTCAACATATTCGTT+TGG + chr1_3:59301133-59301152 Msa0129390:CDS 35.0%
TTCCAATCAGTGAATGCAAA+TGG + chr1_3:59301179-59301198 Msa0129390:CDS 35.0%
GTCCTTGAAATTGTATCCAT+CGG + chr1_3:59301362-59301381 Msa0129390:intron 35.0%
!! AATTTGTTGGGTAAAAGCCT+AGG + chr1_3:59301565-59301584 Msa0129390:intron 35.0%
ACATTGAGAAAGTAACTCCT+AGG - chr1_3:59301585-59301604 None:intergenic 35.0%
GTTATAAAGTGCAGTAGTGT+AGG + chr1_3:59301827-59301846 Msa0129390:intron 35.0%
!!! TGCCATTTTATTTAGCACTG+GGG + chr1_3:59301879-59301898 Msa0129390:intron 35.0%
CTCACATCAAATCCATTTCT+TGG - chr1_3:59301968-59301987 None:intergenic 35.0%
GAGTTACAAGAAAATGGGAT+TGG + chr1_3:59301985-59302004 Msa0129390:CDS 35.0%
! ATGATACTTGTTGCTGTCTT+AGG + chr1_3:59302031-59302050 Msa0129390:CDS 35.0%
TTATAGATGGTAGAGCCATA+AGG + chr1_3:59302062-59302081 Msa0129390:CDS 35.0%
CAAATGCATTTCTCTCCTTA+TGG - chr1_3:59302080-59302099 None:intergenic 35.0%
!!! TCATATTTTTTCTCTCGGCT+TGG - chr1_3:59302138-59302157 None:intergenic 35.0%
GGCTTCCAATTTAATCCAAA+TGG + chr1_3:59302267-59302286 Msa0129390:CDS 35.0%
GATTGTACACAAGACTTACT+AGG + chr1_3:59302292-59302311 Msa0129390:CDS 35.0%
! CTTTGTGTACGATTTTGCTT+AGG + chr1_3:59302397-59302416 Msa0129390:intron 35.0%
ACTAGACACAAGCAAAATTG+AGG + chr1_3:59302435-59302454 Msa0129390:CDS 35.0%
ATCTCATTTCTTGGAAGAAG+TGG + chr1_3:59302495-59302514 Msa0129390:CDS 35.0%
! GGTTGATATATACCATCTTG+TGG + chr1_3:59302516-59302535 Msa0129390:CDS 35.0%
! GAAAGGTGTAGATCTTGTAT+TGG + chr1_3:59302546-59302565 Msa0129390:CDS 35.0%
ATAAAATATTCGCGCGTGAA+AGG + chr1_3:59302589-59302608 Msa0129390:CDS 35.0%
!!! GTTTTTTCTATGTCCTCATC+TGG - chr1_3:59302802-59302821 None:intergenic 35.0%
!! GAAGTTGATGATACAGGAAA+AGG + chr1_3:59302871-59302890 Msa0129390:CDS 35.0%
ACAGACTTGGAATTCTCTTT+GGG - chr1_3:59302901-59302920 None:intergenic 35.0%
GAAACTAATCCTGTTCAAGA+AGG + chr1_3:59302946-59302965 Msa0129390:CDS 35.0%
GCATGGAGATATTGAAATTG+TGG + chr1_3:59303093-59303112 Msa0129390:CDS 35.0%
TTTCACCTTCACATAAACTG+AGG - chr1_3:59303165-59303184 None:intergenic 35.0%
!! AGTGACAGATTTTAGCACAA+GGG + chr1_3:59303186-59303205 Msa0129390:CDS 35.0%
GAGTTGCACATATGATACAT+GGG - chr1_3:59303304-59303323 None:intergenic 35.0%
AGAGTTGCACATATGATACA+TGG - chr1_3:59303305-59303324 None:intergenic 35.0%
TCCAATGAAAAGAACAACAC+GGG - chr1_3:59303347-59303366 None:intergenic 35.0%
GAGCTTAGGGATTAAAGTTA+AGG + chr1_3:59303405-59303424 Msa0129390:CDS 35.0%
AGATCTGTTTGATACTCTAG+AGG + chr1_3:59303444-59303463 Msa0129390:CDS 35.0%
AGAAGAACTCAAATTGGAAG+AGG - chr1_3:59303518-59303537 None:intergenic 35.0%
GGAATGAGAAGAACTCAAAT+TGG - chr1_3:59303524-59303543 None:intergenic 35.0%
GTTCCATCCATAAAACTCAA+GGG - chr1_3:59303583-59303602 None:intergenic 35.0%
AGTTCCATCCATAAAACTCA+AGG - chr1_3:59303584-59303603 None:intergenic 35.0%
CAACGTTACAAGAATTCGAA+AGG - chr1_3:59303738-59303757 None:intergenic 35.0%
CGAATTCTTGTAACGTTGTT+TGG + chr1_3:59303740-59303759 Msa0129390:CDS 35.0%
TTCTTGTAACGTTGTTTGGT+TGG + chr1_3:59303744-59303763 Msa0129390:CDS 35.0%
GAATCAATACGATGCATATG+TGG - chr1_3:59303775-59303794 None:intergenic 35.0%
CTTCTTCCTGAGTATGATAA+TGG + chr1_3:59303868-59303887 Msa0129390:CDS 35.0%
ACACTACCATTATCATACTC+AGG - chr1_3:59303877-59303896 None:intergenic 35.0%
AGAAATTCTCCTGTTCATCA+AGG + chr1_3:59303925-59303944 Msa0129390:CDS 35.0%
TGAATTTCTCCTTGATGAAC+AGG - chr1_3:59303937-59303956 None:intergenic 35.0%
GGAGAAATTCAAGAATGTGA+AGG + chr1_3:59303946-59303965 Msa0129390:CDS 35.0%
!! CAAGAAGTTTTTGATTGTCG+AGG + chr1_3:59303996-59304015 Msa0129390:CDS 35.0%
!! TTACATCTTAATGGATTGCC+AGG + chr1_3:59304158-59304177 Msa0129390:CDS 35.0%
TAAACGAATTCAACAGATGC+CGG + chr1_3:59304299-59304318 Msa0129390:intron 35.0%
TCTGCACTTAATGCAATGAT+AGG - chr1_3:59304390-59304409 None:intergenic 35.0%
AGATATTGATAGATCGACGA+CGG + chr1_3:59304407-59304426 Msa0129390:CDS 35.0%
ACTCTTCTATCAGCACAAGT+TGG + chr1_3:59300892-59300911 Msa0129390:CDS 40.0%
TCTGCTAGAGTCAACAGAAT+AGG + chr1_3:59300999-59301018 Msa0129390:CDS 40.0%
AGAATAGGAGTGATCTCTCT+TGG + chr1_3:59301014-59301033 Msa0129390:CDS 40.0%
AATACGTGCTCGTTCCTAAA+CGG - chr1_3:59301082-59301101 None:intergenic 40.0%
TTTAGGAACGAGCACGTATT+TGG + chr1_3:59301082-59301101 Msa0129390:CDS 40.0%
GATGGACAAATTCTTGTGGA+AGG + chr1_3:59301113-59301132 Msa0129390:CDS 40.0%
CTCCATTTGCATTCACTGAT+TGG - chr1_3:59301184-59301203 None:intergenic 40.0%
TGCTCCCCGATTGATATATT+GGG + chr1_3:59301296-59301315 Msa0129390:CDS 40.0%
GACCGATGGATACAATTTCA+AGG - chr1_3:59301367-59301386 None:intergenic 40.0%
CACTTTCATCCCTATAGATG+CGG + chr1_3:59301660-59301679 Msa0129390:intron 40.0%
TGAAGATGTGACACTTCATG+TGG - chr1_3:59301700-59301719 None:intergenic 40.0%
!! GCCATTTTATTTAGCACTGG+GGG + chr1_3:59301880-59301899 Msa0129390:intron 40.0%
TCCCCCAGTGCTAAATAAAA+TGG - chr1_3:59301884-59301903 None:intergenic 40.0%
! TTTATTTAGCACTGGGGGAA+TGG + chr1_3:59301885-59301904 Msa0129390:intron 40.0%
!!! GTTTTGGCTGTACCAAGAAA+TGG + chr1_3:59301953-59301972 Msa0129390:CDS 40.0%
TCATCTAAGTTAGTTCCCTC+TGG + chr1_3:59302235-59302254 Msa0129390:CDS 40.0%
CTTGTGTACAATCCTCCATT+TGG - chr1_3:59302285-59302304 None:intergenic 40.0%
GACACAAGCAAAATTGAGGT+AGG + chr1_3:59302439-59302458 Msa0129390:CDS 40.0%
GGTAGGAAAAATGGAACTTG+TGG + chr1_3:59302456-59302475 Msa0129390:CDS 40.0%
TATATACCATCTTGTGGCGA+TGG + chr1_3:59302522-59302541 Msa0129390:CDS 40.0%
CTTGTATTGGACCCTTGTAA+TGG + chr1_3:59302559-59302578 Msa0129390:CDS 40.0%
CACAGACTTGGAATTCTCTT+TGG - chr1_3:59302902-59302921 None:intergenic 40.0%
AATCCTGTTCAAGAAGGAAC+AGG + chr1_3:59302952-59302971 Msa0129390:CDS 40.0%
ACTTGGAATTGTGCAGTCTT+TGG + chr1_3:59302981-59303000 Msa0129390:CDS 40.0%
TTGTAGGTACGTTTGATGCA+TGG + chr1_3:59303076-59303095 Msa0129390:intron 40.0%
!! CAGTGACAGATTTTAGCACA+AGG + chr1_3:59303185-59303204 Msa0129390:CDS 40.0%
!! ACAGATTTTAGCACAAGGGA+AGG + chr1_3:59303190-59303209 Msa0129390:CDS 40.0%
ACTAGAACTAGTAGCATGAG+TGG - chr1_3:59303260-59303279 None:intergenic 40.0%
CATATGATACATGGGACTCA+TGG - chr1_3:59303296-59303315 None:intergenic 40.0%
ATATGTGCAACTCTAGTCCT+AGG + chr1_3:59303311-59303330 Msa0129390:CDS 40.0%
!! TCCCGTGTTGTTCTTTTCAT+TGG + chr1_3:59303343-59303362 Msa0129390:CDS 40.0%
TCTAGAGGAGATCAAACAGA+AGG + chr1_3:59303459-59303478 Msa0129390:CDS 40.0%
CTAGAGGAGATCAAACAGAA+GGG + chr1_3:59303460-59303479 Msa0129390:CDS 40.0%
! AAGAGGATTCTGGAGAACTT+GGG - chr1_3:59303501-59303520 None:intergenic 40.0%
CTCAAATTGGAAGAGGATTC+TGG - chr1_3:59303511-59303530 None:intergenic 40.0%
! AGGTGTTCCCTTGAGTTTTA+TGG + chr1_3:59303573-59303592 Msa0129390:CDS 40.0%
!! GTTCCCTTGAGTTTTATGGA+TGG + chr1_3:59303577-59303596 Msa0129390:CDS 40.0%
ATTGTCATCGATGCAAATGC+AGG + chr1_3:59303664-59303683 Msa0129390:CDS 40.0%
CGAAAGGCCTTTCTTGAATT+TGG - chr1_3:59303722-59303741 None:intergenic 40.0%
GTCGTATCGAAACCATTTCA+CGG + chr1_3:59303820-59303839 Msa0129390:CDS 40.0%
AACAAACGACTACCGTGAAA+TGG - chr1_3:59303835-59303854 None:intergenic 40.0%
!! CAGGAAGAAGCATTATGACT+TGG - chr1_3:59303858-59303877 None:intergenic 40.0%
!! ACAGGAGAATTTCTAGTGTG+AGG - chr1_3:59303919-59303938 None:intergenic 40.0%
GCTGTAATGCTAGTTGTTGA+AGG + chr1_3:59304102-59304121 Msa0129390:CDS 40.0%
ATTGCCAGGTATAATGACCA+TGG + chr1_3:59304172-59304191 Msa0129390:intron 40.0%
AGAAATCAAACCACAGTCCA+TGG - chr1_3:59304192-59304211 None:intergenic 40.0%
! ATGGATTTGAGGCAACAATG+CGG + chr1_3:59304328-59304347 Msa0129390:CDS 40.0%
ATAGGAATGCGAACACCAAA+CGG - chr1_3:59304372-59304391 None:intergenic 40.0%
TTATCTCGTTGACACCATGC+TGG + chr1_3:59300348-59300367 Msa0129390:CDS 45.0%
GTTACCATGACATACCAGCA+TGG - chr1_3:59300365-59300384 None:intergenic 45.0%
ATCATGTCCATTGGTCCACT+TGG - chr1_3:59300964-59300983 None:intergenic 45.0%
GTTACTCGTGTCAACCGTTT+AGG + chr1_3:59301065-59301084 Msa0129390:CDS 45.0%
ATATATCAATCGGGGAGCAG+CGG - chr1_3:59301295-59301314 None:intergenic 45.0%
CTGCTCCCCGATTGATATAT+TGG + chr1_3:59301295-59301314 Msa0129390:CDS 45.0%
TGAAGATGTGTCAGTCCACA+TGG + chr1_3:59301503-59301522 Msa0129390:intron 45.0%
ACATCACTGCCGCATCTATA+GGG - chr1_3:59301672-59301691 None:intergenic 45.0%
! AGTTCCCTCTGGTTCAGAAT+TGG + chr1_3:59302246-59302265 Msa0129390:CDS 45.0%
GAAGCCAATTCTGAACCAGA+GGG - chr1_3:59302253-59302272 None:intergenic 45.0%
TACTAGGTAAACACTCCACC+TGG + chr1_3:59302308-59302327 Msa0129390:intron 45.0%
ACACATTACGGTTCGAGCTT+GGG + chr1_3:59302681-59302700 Msa0129390:CDS 45.0%
ACAAGATCCAACGCGTTCTA+TGG + chr1_3:59302837-59302856 Msa0129390:CDS 45.0%
GTGAAATCCATAGAACGCGT+TGG - chr1_3:59302847-59302866 None:intergenic 45.0%
AAGCCTGTTCCTTCTTGAAC+AGG - chr1_3:59302958-59302977 None:intergenic 45.0%
GTTCAAGAAGGAACAGGCTT+AGG + chr1_3:59302958-59302977 Msa0129390:CDS 45.0%
GGAATTGTGCAGTCTTTGGT+AGG + chr1_3:59302985-59303004 Msa0129390:intron 45.0%
GTGCTCCTCAGTTTATGTGA+AGG + chr1_3:59303157-59303176 Msa0129390:CDS 45.0%
ACAAGGGAAGGTCTTGAGTA+TGG + chr1_3:59303202-59303221 Msa0129390:CDS 45.0%
AGTAACAGTACTCAAGCTCG+AGG + chr1_3:59303229-59303248 Msa0129390:CDS 45.0%
GTAACAGTACTCAAGCTCGA+GGG + chr1_3:59303230-59303249 Msa0129390:CDS 45.0%
TCATTGGAAATGTGGAGCGT+CGG + chr1_3:59303359-59303378 Msa0129390:CDS 45.0%
GAGAACTTGGGCCATTTGAA+CGG - chr1_3:59303489-59303508 None:intergenic 45.0%
! GAAGAGGATTCTGGAGAACT+TGG - chr1_3:59303502-59303521 None:intergenic 45.0%
ACTGTCGAGCAATGTGAGAA+TGG + chr1_3:59304072-59304091 Msa0129390:CDS 45.0%
CAGTCCATGGTCATTATACC+TGG - chr1_3:59304179-59304198 None:intergenic 45.0%
! GGTATAATGACCATGGACTG+TGG + chr1_3:59304179-59304198 Msa0129390:intron 45.0%
AATTCAACAGATGCCGGTGA+TGG + chr1_3:59304305-59304324 Msa0129390:intron 45.0%
AACAATGCGGATACGAGAGA+TGG + chr1_3:59304341-59304360 Msa0129390:CDS 45.0%
GACACCATGCTGGTATGTCA+TGG + chr1_3:59300358-59300377 Msa0129390:CDS 50.0%
TTGCCTCATTGGGAACCAAG+TGG + chr1_3:59300946-59300965 Msa0129390:CDS 50.0%
TTGGGAACCAAGTGGACCAA+TGG + chr1_3:59300954-59300973 Msa0129390:CDS 50.0%
!! TGAGGGTACTGTCTCATGCA+AGG + chr1_3:59301220-59301239 Msa0129390:CDS 50.0%
GACGTGATGTGAAGTCCATG+TGG - chr1_3:59301521-59301540 None:intergenic 50.0%
CACATCACTGCCGCATCTAT+AGG - chr1_3:59301673-59301692 None:intergenic 50.0%
CTATAGATGCGGCAGTGATG+TGG + chr1_3:59301671-59301690 Msa0129390:intron 50.0%
! TTTAGCACTGGGGGAATGGA+TGG + chr1_3:59301889-59301908 Msa0129390:intron 50.0%
!!! TTTTCTCTCGGCTTGGTGAG+TGG - chr1_3:59302131-59302150 None:intergenic 50.0%
GGAAGCCAATTCTGAACCAG+AGG - chr1_3:59302254-59302273 None:intergenic 50.0%
CTTTCTCCATCGCCACAAGA+TGG - chr1_3:59302531-59302550 None:intergenic 50.0%
CATCTTGTGGCGATGGAGAA+AGG + chr1_3:59302529-59302548 Msa0129390:CDS 50.0%
GACACATTACGGTTCGAGCT+TGG + chr1_3:59302680-59302699 Msa0129390:CDS 50.0%
GAAGGAACAGGCTTAGGACT+TGG + chr1_3:59302964-59302983 Msa0129390:CDS 50.0%
! AGCGTCGGAGGACTTGTAAA+AGG + chr1_3:59303374-59303393 Msa0129390:CDS 50.0%
AACTTGGGCCATTTGAACGG+CGG - chr1_3:59303486-59303505 None:intergenic 50.0%
GCCTCAAATCCATCCATCAC+CGG - chr1_3:59304321-59304340 None:intergenic 50.0%
GGTCCACTTGGTTCCCAATG+AGG - chr1_3:59300952-59300971 None:intergenic 55.0%
GTCATGGCTGGCACTAGCAA+CGG - chr1_3:59302173-59302192 None:intergenic 55.0%
! AGAAGTGCGAACGTCATGGC+TGG - chr1_3:59302185-59302204 None:intergenic 55.0%
! CGAGAGAAGTGCGAACGTCA+TGG - chr1_3:59302189-59302208 None:intergenic 55.0%
TTACGGTTCGAGCTTGGGCT+CGG + chr1_3:59302686-59302705 Msa0129390:CDS 55.0%
CAACTCTAGTCCTAGGCTCG+AGG + chr1_3:59303318-59303337 Msa0129390:CDS 55.0%
!! TTGGAAATGTGGAGCGTCGG+AGG + chr1_3:59303362-59303381 Msa0129390:CDS 55.0%
!! CAACAGATGCCGGTGATGGA+TGG + chr1_3:59304309-59304328 Msa0129390:intron 55.0%
!! GCCGGTGATGGATGGATTTG+AGG + chr1_3:59304317-59304336 Msa0129390:CDS 55.0%
CGAGAGATGGAGAAGCCGTT+TGG + chr1_3:59304354-59304373 Msa0129390:CDS 55.0%
GATAGATCGACGACGGTGAC+TGG + chr1_3:59304414-59304433 Msa0129390:CDS 55.0%
ATCGACGACGGTGACTGGAA+TGG + chr1_3:59304419-59304438 Msa0129390:CDS 55.0%
GACGTTCGCACTTCTCTCGC+AGG + chr1_3:59302190-59302209 Msa0129390:CDS 60.0%
ATTCGCGCGTGAAAGGCGAC+AGG + chr1_3:59302596-59302615 Msa0129390:CDS 60.0%
TTCGCGCGTGAAAGGCGACA+GGG + chr1_3:59302597-59302616 Msa0129390:CDS 60.0%
CAGAAGGGCCGCCGTTCAAA+TGG + chr1_3:59303475-59303494 Msa0129390:CDS 60.0%
TCGCGCGTGAAAGGCGACAG+GGG + chr1_3:59302598-59302617 Msa0129390:CDS 65.0%
ACACGGGATGCCTCGAGCCT+AGG - chr1_3:59303331-59303350 None:intergenic 65.0%
GGCTGGCACTAGCAACGGCG+AGG - chr1_3:59302168-59302187 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 59300187 59304509 59300187 ID=Msa0129390;Name=Msa0129390
chr1_3 mRNA 59300187 59304509 59300187 ID=Msa0129390-mRNA-1;Parent=Msa0129390;Name=Msa0129390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|7|0|1054
chr1_3 exon 59300187 59300222 59300187 ID=Msa0129390-mRNA-1:exon:19297;Parent=Msa0129390-mRNA-1
chr1_3 exon 59300326 59300562 59300326 ID=Msa0129390-mRNA-1:exon:19298;Parent=Msa0129390-mRNA-1
chr1_3 exon 59300681 59301328 59300681 ID=Msa0129390-mRNA-1:exon:19299;Parent=Msa0129390-mRNA-1
chr1_3 exon 59301947 59302313 59301947 ID=Msa0129390-mRNA-1:exon:19300;Parent=Msa0129390-mRNA-1
chr1_3 exon 59302419 59303002 59302419 ID=Msa0129390-mRNA-1:exon:19301;Parent=Msa0129390-mRNA-1
chr1_3 exon 59303082 59304179 59303082 ID=Msa0129390-mRNA-1:exon:19302;Parent=Msa0129390-mRNA-1
chr1_3 exon 59304315 59304509 59304315 ID=Msa0129390-mRNA-1:exon:19303;Parent=Msa0129390-mRNA-1
chr1_3 CDS 59300187 59300222 59300187 ID=Msa0129390-mRNA-1:cds;Parent=Msa0129390-mRNA-1
chr1_3 CDS 59300326 59300562 59300326 ID=Msa0129390-mRNA-1:cds;Parent=Msa0129390-mRNA-1
chr1_3 CDS 59300681 59301328 59300681 ID=Msa0129390-mRNA-1:cds;Parent=Msa0129390-mRNA-1
chr1_3 CDS 59301947 59302313 59301947 ID=Msa0129390-mRNA-1:cds;Parent=Msa0129390-mRNA-1
chr1_3 CDS 59302419 59303002 59302419 ID=Msa0129390-mRNA-1:cds;Parent=Msa0129390-mRNA-1
chr1_3 CDS 59303082 59304179 59303082 ID=Msa0129390-mRNA-1:cds;Parent=Msa0129390-mRNA-1
chr1_3 CDS 59304315 59304509 59304315 ID=Msa0129390-mRNA-1:cds;Parent=Msa0129390-mRNA-1
Gene Sequence

>Msa0129390

ATGGCATTACAGCCTTTGTCTATCGTGATCTTACTGGCATATGGGGCACTGATAACGCTTATCTCGTTGACACCATGCTGGTATGTCATGGTAACACATATCGAGAAACAAGCAAATTTGAGCTCAGAAAATATTGTAACACAACTGCAATCAGAAATTAAGTACTCAACTGAACTGTTGCATCCAATGAAATCATCATCAACAAATTTAGCAAGATTGTTGAGTTCGAAACTTGATTCTACTAACATCTCTTTCTCTGATATTGAAACCAAGGTTGCTCCACTGTTATTTGAAGCATTTGAGACAGTTCCTCACTTGACTCAAATCTCATACATTGGAATGGAAGGTCTCTTTTTCTCATATTGCAGTGATCTTGATCAAGCTCTAGCAATATACTCTAACTCATCATCAAATAAAATCTTATACTATGTCCATCCTGTGAATAATGAAACTGGAAAAGTTTTTGGAGAAGCCATAGTATCAAACTCTTCTATCAGCACAAGTTGGATTAAGAAAGAAGCTAATACTTCAAATGAATTTGCCTCATTGGGAACCAAGTGGACCAATGGACATGATCTTTTGTTTCTAAATTCTGCTAGAGTCAACAGAATAGGAGTGATCTCTCTTGGATTTTCAGCAAAAGCAATAACTGATTCTGTTACTCGTGTCAACCGTTTAGGAACGAGCACGTATTTGGCTACAAAAGATGGACAAATTCTTGTGGAAGGGATTCAACATATTCGTTTGGTTATTTCTAATGATTCAGTTTCATTCCAATCAGTGAATGCAAATGGAGATGTGATTAAGAATTATGAGGGTACTGTCTCATGCAAGGATGAAGCTACTGCTTCTAGTTTGAATATTCAAAATACTCAATATCTAATCCGCTGCTCCCCGATTGATATATTGGGAATAGAATCAGTGTATGTTTTGGCTGTACCAAGAAATGGATTTGATGTGAGTTACAAGAAAATGGGATTGGCTTTATTGAATGTAATGTTGGTAATGATACTTGTTGCTGTCTTAGGTTTTCTATTTATAGATGGTAGAGCCATAAGGAGAGAAATGCATTTGTGTGCCTCACTTATCAAACAAAAAGAGGCCACTCACCAAGCCGAGAGAAAAAATATGAACAAAAGCCTCGCCGTTGCTAGTGCCAGCCATGACGTTCGCACTTCTCTCGCAGGCATTACTGCTCTCATAAAAATTTCATCTAAGTTAGTTCCCTCTGGTTCAGAATTGGCTTCCAATTTAATCCAAATGGAGGATTGTACACAAGACTTACTAGGACTATTGAACTCTATACTAGACACAAGCAAAATTGAGGTAGGAAAAATGGAACTTGTGGAAGAAGAATTTGATTTATCTCATTTCTTGGAAGAAGTGGTTGATATATACCATCTTGTGGCGATGGAGAAAGGTGTAGATCTTGTATTGGACCCTTGTAATGGTTCTGTTATAAAATATTCGCGCGTGAAAGGCGACAGGGGAAGACTTAAACAAGTTTTGTGTAATTTACTGAACAATGCTGTCAAATTTACAAATGAAGGACACATTACGGTTCGAGCTTGGGCTCGGAAGCCAACATTAAGTAGCTCAATAATCAAGACCAACCAAAATAGTTTCATGAAACAATTGTCATGGTTATTTTCTAAGAAAAAAAATGAACCAGATGAGGACATAGAAAAAACTATGAATTCAATTCAACAAGATCCAACGCGTTCTATGGATTTCACATTTGAAGTTGATGATACAGGAAAAGGAATTCCCAAAGAGAATTCCAAGTCTGTGTTTGAGAATTATGTTCAAGTCAAAGAAACTAATCCTGTTCAAGAAGGAACAGGCTTAGGACTTGGAATTGTGCAGTCTTTGGTACGTTTGATGCATGGAGATATTGAAATTGTGGACAAGAATATTGGTGAAAAAGGAACATGTTTTCGGTTCAATGTGCTCCTCAGTTTATGTGAAGGTGAAACAGTGACAGATTTTAGCACAAGGGAAGGTCTTGAGTATGGAACAAGTAACAGTACTCAAGCTCGAGGGAGAACCACTCATGCTACTAGTTCTAGTTCAAACATTTGTTCCATGAGTCCCATGTATCATATGTGCAACTCTAGTCCTAGGCTCGAGGCATCCCGTGTTGTTCTTTTCATTGGAAATGTGGAGCGTCGGAGGACTTGTAAAAGGTTTATGAAGAGCTTAGGGATTAAAGTTAAGGTTGTGAAGTGTCAAAAAGATCTGTTTGATACTCTAGAGGAGATCAAACAGAAGGGCCGCCGTTCAAATGGCCCAAGTTCTCCAGAATCCTCTTCCAATTTGAGTTCTTCTCATTCCACATCTCATAATTCATTTTCTAGAGCTAAAGGTGTTCCCTTGAGTTTTATGGATGGAACTGAGTATATGTCTCCAGTGTTCAAAAAGATGAATTTTGGAACTGTAGCATGCTTCGTCTTGATTGTCATCGATGCAAATGCAGGATCATCATTTTCTGAACTCTTTGGAATTGTATCCAAATTCAAGAAAGGCCTTTCGAATTCTTGTAACGTTGTTTGGTTGGATAATCCACATATGCATCGTATTGATTCCAGAATAATTGATCAAAATGACATTGTCGTATCGAAACCATTTCACGGTAGTCGTTTGTTCCAAGTCATAATGCTTCTTCCTGAGTATGATAATGGTAGTGTTTGGCAAAGCATTAAGAAACCTCACACTAGAAATTCTCCTGTTCATCAAGGAGAAATTCAAGAATGTGAAGGCTCAAGCTGTTACAAACCTTTGCATTGCAAGAAGTTTTTGATTGTCGAGGATACTAAAATTTTACGTGTGATAGCGACAAATATATTGGTTTCGCTTGGAGCGACTGTCGAGCAATGTGAGAATGGCAAAGAAGCTGTAATGCTAGTTGTTGAAGGTCTAAAAAGGGATGATCCTAATCCTCCTTATGATTACATCTTAATGGATTGCCAGATGCCGGTGATGGATGGATTTGAGGCAACAATGCGGATACGAGAGATGGAGAAGCCGTTTGGTGTTCGCATTCCTATCATTGCATTAAGTGCAGATATTGATAGATCGACGACGGTGACTGGAATGGACTTTTATATAGAAAAACCACTTAGAAAAGAGCATTTACTTGAAGCCGTCAGAATCTTAAACAGTTAA
Protein sequence

>Msa0129390

MALQPLSIVILLAYGALITLISLTPCWYVMVTHIEKQANLSSENIVTQLQSEIKYSTELLHPMKSSSTNLARLLSSKLDSTNISFSDIETKVAPLLFEAFETVPHLTQISYIGMEGLFFSYCSDLDQALAIYSNSSSNKILYYVHPVNNETGKVFGEAIVSNSSISTSWIKKEANTSNEFASLGTKWTNGHDLLFLNSARVNRIGVISLGFSAKAITDSVTRVNRLGTSTYLATKDGQILVEGIQHIRLVISNDSVSFQSVNANGDVIKNYEGTVSCKDEATASSLNIQNTQYLIRCSPIDILGIESVYVLAVPRNGFDVSYKKMGLALLNVMLVMILVAVLGFLFIDGRAIRREMHLCASLIKQKEATHQAERKNMNKSLAVASASHDVRTSLAGITALIKISSKLVPSGSELASNLIQMEDCTQDLLGLLNSILDTSKIEVGKMELVEEEFDLSHFLEEVVDIYHLVAMEKGVDLVLDPCNGSVIKYSRVKGDRGRLKQVLCNLLNNAVKFTNEGHITVRAWARKPTLSSSIIKTNQNSFMKQLSWLFSKKKNEPDEDIEKTMNSIQQDPTRSMDFTFEVDDTGKGIPKENSKSVFENYVQVKETNPVQEGTGLGLGIVQSLVRLMHGDIEIVDKNIGEKGTCFRFNVLLSLCEGETVTDFSTREGLEYGTSNSTQARGRTTHATSSSSNICSMSPMYHMCNSSPRLEASRVVLFIGNVERRRTCKRFMKSLGIKVKVVKCQKDLFDTLEEIKQKGRRSNGPSSPESSSNLSSSHSTSHNSFSRAKGVPLSFMDGTEYMSPVFKKMNFGTVACFVLIVIDANAGSSFSELFGIVSKFKKGLSNSCNVVWLDNPHMHRIDSRIIDQNDIVVSKPFHGSRLFQVIMLLPEYDNGSVWQSIKKPHTRNSPVHQGEIQECEGSSCYKPLHCKKFLIVEDTKILRVIATNILVSLGATVEQCENGKEAVMLVVEGLKRDDPNPPYDYILMDCQMPVMDGFEATMRIREMEKPFGVRIPIIALSADIDRSTTVTGMDFYIEKPLRKEHLLEAVRILNS*