AlfalfaGEDB | Msa0129590

M. sativa cultivar zhongmu-4 / Msa0129590

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129590	G7I2W4	87.417	151	13	1	1	151	1	145	5.23e-90	267

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TFs/TRs:

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Gene ID	Type	Classification
Msa0129590	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129590	MtrunA17_Chr5g0399781	56.604	53	22	1	4	56	13	64	2.27e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 26 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAAAGTTTGGCGTAAA+GGG	0.384790	1_3:+59632097	Msa0129590:CDS
AACAAAAGCTTCGCGATCTA+TGG	0.184009	1_3:+59632986	Msa0129590:CDS
AAGACAAATGTTACTTCTAC+TGG	0.334161	1_3:+59633117	Msa0129590:CDS
AAGCTTTCAAACCAAACTCC+AGG	0.583403	1_3:+59632261	Msa0129590:CDS
AAGTAACATTTGTCTTTAGA+AGG	0.383538	1_3:-59633110	None:intergenic
AATGGAGACGCCGACACCAA+TGG	0.570703	1_3:+59632954	Msa0129590:CDS
ACAAAAGCTTCGCGATCTAT+GGG	0.510066	1_3:+59632987	Msa0129590:CDS
AGACAAATGTTACTTCTACT+GGG	0.600449	1_3:+59633118	Msa0129590:CDS
ATTGGTGTCGGCGTCTCCAT+TGG	0.465624	1_3:-59632952	None:intergenic
CAAGTAATGAGATAGGCCTT+GGG	0.567827	1_3:+59633082	Msa0129590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTAAAGTTTGGCGTAAA+GGG	+	chr1_3:59632097-59632116	Msa0129590:CDS	30.0%
TATTTCAAAAACTTTAGCGG+CGG	-	chr1_3:59632435-59632454	None:intergenic	30.0%
TACTCATAAGCAGTGTAAAA+TGG	+	chr1_3:59632496-59632515	Msa0129590:intron	30.0%
ACTCATAAGCAGTGTAAAAT+GGG	+	chr1_3:59632497-59632516	Msa0129590:intron	30.0%
TTGCTTCACTATCAATAAGA+TGG	+	chr1_3:59632646-59632665	Msa0129590:intron	30.0%
TGTATGTGTGTTACAAAGTT+TGG	-	chr1_3:59632713-59632732	None:intergenic	30.0%
AAAGACAACTAAAGAAGAGT+CGG	+	chr1_3:59632774-59632793	Msa0129590:intron	30.0%
AAACTAAAGTTTGGCGTAAA+GGG	+	chr1_3:59632097-59632116	Msa0129590:CDS	30.0%
TATTTCAAAAACTTTAGCGG+CGG	-	chr1_3:59632435-59632454	None:intergenic	30.0%
TACTCATAAGCAGTGTAAAA+TGG	+	chr1_3:59632496-59632515	Msa0129590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	59632084	59633197	59632084	ID=Msa0129590;Name=Msa0129590
chr1_3	mRNA	59632084	59633197	59632084	ID=Msa0129590-mRNA-1;Parent=Msa0129590;Name=Msa0129590-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|2\|0\|151
chr1_3	exon	59632084	59632282	59632084	ID=Msa0129590-mRNA-1:exon:19437;Parent=Msa0129590-mRNA-1
chr1_3	exon	59632941	59633197	59632941	ID=Msa0129590-mRNA-1:exon:19438;Parent=Msa0129590-mRNA-1
chr1_3	CDS	59632084	59632282	59632084	ID=Msa0129590-mRNA-1:cds;Parent=Msa0129590-mRNA-1
chr1_3	CDS	59632941	59633197	59632941	ID=Msa0129590-mRNA-1:cds;Parent=Msa0129590-mRNA-1

Gene Sequence

>Msa0129590

ATGATTTCAACAGAAACTAAAGTTTGGCGTAAAGGGCCATATGAGAAGCCAATCTTGTGTAACGCTTGTGGATTGCATTTCAAGGCTAAAGGAACCCTTGAAAACTATCTCCCGAAGATAGCCCAGCAAAATCTGTTATTAGACCATGACATTGAAAAAGCATCTAGAAGTGACCCAAAGCTTTCAAACCAAACTCCAGAGAGGTTGACACCAATGGAGACGCCGACACCAATGGAGGAGTTTCAACAAAAGCTTCGCGATCTATGGGAATCTGAGAAAGAAGCAAATGATTCATCATCAGACAATATTTTGTTGTTTGATAATATGAACAACTTTATACCAAGTAATGAGATAGGCCTTGGGTGCAGCCTTCTAAAGACAAATGTTACTTCTACTGGGTCCACTCTTCAAAAGACAAATGTTACTTCTACAAATCAACATGATTCACATGCATAG

Protein sequence

>Msa0129590

MISTETKVWRKGPYEKPILCNACGLHFKAKGTLENYLPKIAQQNLLLDHDIEKASRSDPKLSNQTPERLTPMETPTPMEEFQQKLRDLWESEKEANDSSSDNILLFDNMNNFIPSNEIGLGCSLLKTNVTSTGSTLQKTNVTSTNQHDSHA*