Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131660 | QSD99697.1 | 46.636 | 431 | 156 | 12 | 168 | 535 | 78 | 497 | 1.20e-88 | 300 |
| Msa0131660 | QSD99697.1 | 54.634 | 410 | 134 | 8 | 360 | 723 | 178 | 581 | 1.65e-113 | 365 |
| Msa0131660 | QSD99697.1 | 54.864 | 514 | 124 | 11 | 1 | 423 | 1 | 497 | 4.02e-150 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131660 | A0A896W457 | 46.636 | 431 | 156 | 12 | 168 | 535 | 78 | 497 | 5.71e-89 | 300 |
| Msa0131660 | A0A896W457 | 54.634 | 410 | 134 | 8 | 360 | 723 | 178 | 581 | 7.89e-114 | 365 |
| Msa0131660 | A0A896W457 | 54.864 | 514 | 124 | 11 | 1 | 423 | 1 | 497 | 1.92e-150 | 459 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0131660 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131660 | MtrunA17_Chr1g0192411 | 40.000 | 320 | 133 | 15 | 18 | 308 | 65 | 354 | 2.26e-38 | 147 |
| Msa0131660 | MtrunA17_Chr4g0072451 | 45.977 | 87 | 28 | 2 | 1 | 75 | 1 | 80 | 5.09e-14 | 69.7 |
| Msa0131660 | MtrunA17_Chr5g0441141 | 35.802 | 162 | 61 | 7 | 18 | 160 | 65 | 202 | 1.18e-12 | 68.9 |
| Msa0131660 | MtrunA17_Chr5g0440761 | 36.552 | 145 | 58 | 5 | 18 | 143 | 65 | 194 | 6.40e-12 | 66.6 |
| Msa0131660 | MtrunA17_Chr5g0440781 | 36.054 | 147 | 53 | 6 | 18 | 145 | 65 | 189 | 3.06e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 110 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAAACATTGATGGAATT+TGG | 0.105590 | 1_3:+62538209 | None:intergenic |
| GATTGAAAACCTAAGTATTT+TGG | 0.179606 | 1_3:+62538774 | None:intergenic |
| GATTGAAAACCTAAGTATTT+TGG | 0.179606 | 1_3:+62539305 | None:intergenic |
| GATTGAAAACCTAAGTATTT+TGG | 0.179606 | 1_3:+62539567 | None:intergenic |
| TCATCTTTCTCCAAAGAAAT+TGG | 0.201847 | 1_3:+62537770 | None:intergenic |
| GATTGAAAACCTAAGCATTT+TGG | 0.209622 | 1_3:+62538503 | None:intergenic |
| GTCAATATGGAGAGTGTAAT+TGG | 0.210509 | 1_3:-62542411 | Msa0131660:CDS |
| TTCTGCTGAAAAGGTTCTTT+TGG | 0.240988 | 1_3:+62539899 | None:intergenic |
| TCCTACTATGATTGCAACTA+TGG | 0.256318 | 1_3:-62540887 | Msa0131660:CDS |
| TCTAATCACCTATCAATTAT+TGG | 0.259605 | 1_3:+62538137 | None:intergenic |
| CCTCCATTTCTAGACTATTC+AGG | 0.261004 | 1_3:-62537989 | Msa0131660:CDS |
| ATCAGATTTGCCTCCATTCT+TGG | 0.261306 | 1_3:-62538252 | Msa0131660:CDS |
| GCTTTCTACTGAAAATATAT+TGG | 0.268672 | 1_3:+62541172 | None:intergenic |
| TCAATTTCGAATGAGCTAAA+TGG | 0.270673 | 1_3:-62541144 | Msa0131660:CDS |
| GGGGAAGACACCAATTTCTT+TGG | 0.279300 | 1_3:-62537780 | Msa0131660:CDS |
| ATCATATTTGAAACATTTAG+AGG | 0.299789 | 1_3:+62541072 | None:intergenic |
| TTTAGCTCATTCGAAATTGA+TGG | 0.301003 | 1_3:+62541147 | None:intergenic |
| AAATAAGCTATGCAATAATA+TGG | 0.316698 | 1_3:-62539782 | Msa0131660:CDS |
| AAAGCGTATGTAAGTCAATA+TGG | 0.330038 | 1_3:-62542424 | Msa0131660:CDS |
| TCCATGGCCATAGTCATAAA+AGG | 0.335955 | 1_3:+62538275 | None:intergenic |
| CTTCCCCAACATTAATTCAT+AGG | 0.340381 | 1_3:-62538409 | Msa0131660:intron |
| ACTTCTGGCATATAAGAATA+AGG | 0.343142 | 1_3:-62541257 | Msa0131660:CDS |
| AGCATATTTGTAACCAACTT+TGG | 0.352264 | 1_3:+62538741 | None:intergenic |
| TTTCATCTGTGTTAGTTGTC+TGG | 0.358423 | 1_3:-62540027 | Msa0131660:intron |
| CTGCTTTCTCTATCATATAA+TGG | 0.359730 | 1_3:+62541213 | None:intergenic |
| CTTCCTCTTCATTAATCAAC+AGG | 0.366206 | 1_3:-62541011 | Msa0131660:intron |
| TCATTCTCGAATCAAGAAAA+AGG | 0.371032 | 1_3:-62542511 | Msa0131660:CDS |
| TTCCATTTGTGTTAGGTGCC+TGG | 0.385530 | 1_3:-62541303 | Msa0131660:intron |
| TAGAATATTCGAAACATTGA+TGG | 0.388357 | 1_3:+62538202 | None:intergenic |
| ATTATTGCTTATAGAAGTAT+TGG | 0.388930 | 1_3:+62538166 | None:intergenic |
| CTAAATGTTTCAAATATGAT+AGG | 0.396602 | 1_3:-62541069 | Msa0131660:CDS |
| TTTATCCCGTGCAAAATTGT+TGG | 0.396688 | 1_3:+62539871 | None:intergenic |
| TTTGAGTCTTCTGAAACCTT+TGG | 0.402173 | 1_3:+62537848 | None:intergenic |
| GACAAGATCGATTGATGAAA+AGG | 0.407040 | 1_3:-62537801 | Msa0131660:CDS |
| ATTATTTCTTATAGAAGTAC+TGG | 0.409933 | 1_3:+62539759 | None:intergenic |
| AGCATATTTGAAACCAACTT+TGG | 0.411986 | 1_3:+62539006 | None:intergenic |
| AGCATATTTGAAACCAACTT+TGG | 0.411986 | 1_3:+62539272 | None:intergenic |
| AGCATATTTGAAACCAACTT+TGG | 0.411986 | 1_3:+62539534 | None:intergenic |
| ACAAGATCGATTGATGAAAA+GGG | 0.414633 | 1_3:-62537800 | Msa0131660:CDS |
| ATACTTCTCCAATAATTGAT+AGG | 0.415917 | 1_3:-62538145 | Msa0131660:intron |
| CATACCTATGAATTAATGTT+GGG | 0.417862 | 1_3:+62538405 | None:intergenic |
| AGCTTATTTGAAACATTTGA+AGG | 0.422690 | 1_3:+62539796 | None:intergenic |
| TTAATGAAGAGGAAGCATTA+TGG | 0.424832 | 1_3:+62541019 | None:intergenic |
| AAACCTGAATAGTCTAGAAA+TGG | 0.427164 | 1_3:+62537986 | None:intergenic |
| CCTCCAAAACCAAAATACTT+AGG | 0.428130 | 1_3:-62538783 | Msa0131660:CDS |
| CCTCCAAAACCAAAATACTT+AGG | 0.428130 | 1_3:-62539314 | Msa0131660:CDS |
| CCTCCAAAACCAAAATACTT+AGG | 0.428130 | 1_3:-62539576 | Msa0131660:CDS |
| TGGAGGCAGATTTGATTCCA+TGG | 0.433793 | 1_3:+62539331 | None:intergenic |
| CCTCCAAAACTAAAATACTT+AGG | 0.440549 | 1_3:-62539048 | Msa0131660:CDS |
| ATCTTCTGAATCTCCAAAGT+TGG | 0.442250 | 1_3:-62539019 | Msa0131660:CDS |
| ATCTTCTGAATCTCCAAAGT+TGG | 0.442250 | 1_3:-62539285 | Msa0131660:CDS |
| TGGAGGTAGATTTGATTCCA+TGG | 0.444563 | 1_3:+62539065 | None:intergenic |
| CCTCCAAAACCAAAATGCTT+AGG | 0.445646 | 1_3:-62538512 | Msa0131660:CDS |
| ATCTTCTGAATCTCCAAAGT+TGG | 0.458628 | 1_3:-62538754 | Msa0131660:CDS |
| ATGTCATTATCAGTTCTTCC+AGG | 0.464303 | 1_3:+62541285 | None:intergenic |
| ATAGATATGATGTATGGCTT+AGG | 0.467257 | 1_3:-62537728 | Msa0131660:CDS |
| CCACTGTTGCATGAAGAATC+TGG | 0.471268 | 1_3:+62537896 | None:intergenic |
| GGGGAAGTATGATTGCTTGT+AGG | 0.473112 | 1_3:+62538425 | None:intergenic |
| TTCAGATGTGGAACTCCAAA+TGG | 0.473555 | 1_3:-62540846 | Msa0131660:CDS |
| GAGTTCCACATCTGAAATTG+AGG | 0.479160 | 1_3:+62540853 | None:intergenic |
| ATCTTCTGAATCTCCAACGT+TGG | 0.481033 | 1_3:-62538483 | Msa0131660:CDS |
| CAAATAATGAGATAAACAAT+TGG | 0.484284 | 1_3:-62539999 | Msa0131660:CDS |
| TCAATATGGAGAGTGTAATT+GGG | 0.488855 | 1_3:-62542410 | Msa0131660:CDS |
| ATATGATGTATGGCTTAGGT+TGG | 0.489579 | 1_3:-62537724 | Msa0131660:CDS |
| AAATCTGAACATTCCAAGAA+TGG | 0.490623 | 1_3:+62538239 | None:intergenic |
| TCCATAGTTGCAATCATAGT+AGG | 0.493631 | 1_3:+62540886 | None:intergenic |
| GACTTAATAGATATGATGTA+TGG | 0.495518 | 1_3:-62537734 | Msa0131660:CDS |
| ACATACCTATGAATTAATGT+TGG | 0.498695 | 1_3:+62538404 | None:intergenic |
| TTACCTGTTGATTAATGAAG+AGG | 0.498828 | 1_3:+62541008 | None:intergenic |
| TGGAGGCAGATTTGATTCCA+AGG | 0.502298 | 1_3:+62538800 | None:intergenic |
| GACTGGCATGGAATCTCCTC+AGG | 0.503629 | 1_3:+62537926 | None:intergenic |
| CAGATTTGATTCCAAGGCCT+CGG | 0.507486 | 1_3:+62538806 | None:intergenic |
| TGGAGGTAGATTTGATTCCA+AGG | 0.513068 | 1_3:+62538529 | None:intergenic |
| GAAAAGAAGCGTGTAAGAGA+TGG | 0.517586 | 1_3:-62539967 | Msa0131660:CDS |
| TGGAGGCAGATTTGATTCCA+AGG | 0.519493 | 1_3:+62539593 | None:intergenic |
| AACCTTTGGTGTATCGAACA+TGG | 0.536898 | 1_3:+62537862 | None:intergenic |
| AAGAATCTGGTTCAAACGAC+TGG | 0.538302 | 1_3:+62537909 | None:intergenic |
| AATGATGAATTTATTGACAA+TGG | 0.541932 | 1_3:-62539931 | Msa0131660:CDS |
| TGGAGGCAAATCTGATTCCA+TGG | 0.553243 | 1_3:+62538259 | None:intergenic |
| TTACATCTTAATTAATGTTG+TGG | 0.554444 | 1_3:+62539732 | None:intergenic |
| ATGGTCTAAAACTGCTCAAG+AGG | 0.558288 | 1_3:-62540827 | Msa0131660:intron |
| CCAGATTCTTCATGCAACAG+TGG | 0.565132 | 1_3:-62537896 | Msa0131660:CDS |
| TTACATGTTAATTGATGATG+TGG | 0.573464 | 1_3:+62539208 | None:intergenic |
| TTACATGTTAATTGATGATG+TGG | 0.573464 | 1_3:+62539470 | None:intergenic |
| TTACATGTTAATTGATGATG+TGG | 0.580787 | 1_3:+62538942 | None:intergenic |
| ATATGCCTCAATTTCAGATG+TGG | 0.584113 | 1_3:-62540858 | Msa0131660:CDS |
| CCTGAATAGTCTAGAAATGG+AGG | 0.585029 | 1_3:+62537989 | None:intergenic |
| TCTGGTTCAAACGACTGGCA+TGG | 0.598010 | 1_3:+62537914 | None:intergenic |
| GATAGAGAAAGCAGTATGAG+TGG | 0.601354 | 1_3:-62541204 | Msa0131660:CDS |
| ATGATTGCTTGTAGGAGTGT+TGG | 0.602776 | 1_3:+62538433 | None:intergenic |
| ATCCATGTTCGATACACCAA+AGG | 0.605567 | 1_3:-62537864 | Msa0131660:CDS |
| TGGCATGGAATCTCCTCAGG+TGG | 0.609942 | 1_3:+62537929 | None:intergenic |
| AAATATGCTATACAATAATG+TGG | 0.613042 | 1_3:-62539258 | Msa0131660:CDS |
| AAATATGCTATACAATAATG+TGG | 0.613042 | 1_3:-62539520 | Msa0131660:CDS |
| CAAGATCGATTGATGAAAAG+GGG | 0.615177 | 1_3:-62537799 | Msa0131660:CDS |
| AAATATGCTATACAATAATG+TGG | 0.620073 | 1_3:-62538727 | Msa0131660:CDS |
| TGGAGGTAGGTCTGATTCTG+TGG | 0.620510 | 1_3:+62538006 | None:intergenic |
| AAACATGCTATACAATAATG+TGG | 0.623597 | 1_3:-62538456 | Msa0131660:CDS |
| AATAGTCTAGAAATGGAGGT+AGG | 0.627386 | 1_3:+62537993 | None:intergenic |
| TCTGAACATTCCAAGAATGG+AGG | 0.635847 | 1_3:+62538242 | None:intergenic |
| AAATATGATAGGCAATAATG+TGG | 0.637173 | 1_3:-62541058 | Msa0131660:CDS |
| ATAAATTCATCATTGTAGAG+TGG | 0.638774 | 1_3:+62539940 | None:intergenic |
| AGCATGTTTGAAACCAACGT+TGG | 0.644807 | 1_3:+62538470 | None:intergenic |
| ATACCTATGAATTAATGTTG+GGG | 0.645942 | 1_3:+62538406 | None:intergenic |
| GAGGCTGCATAATTGAGACA+TGG | 0.654423 | 1_3:+62541091 | None:intergenic |
| GGTGGATACTTATGTATCAG+CGG | 0.668876 | 1_3:+62537947 | None:intergenic |
| GCATAGTTGAGATATGCACT+CGG | 0.693235 | 1_3:+62539821 | None:intergenic |
| GAATATTCTATACAATAACG+TGG | 0.700686 | 1_3:-62538189 | Msa0131660:CDS |
| AAATATGCTATACAATAACG+TGG | 0.707355 | 1_3:-62538992 | Msa0131660:CDS |
| GATACATAAGTATCCACCTG+AGG | 0.722378 | 1_3:-62537942 | Msa0131660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAACTAATTCAAAA+AGG | + | chr1_3:62539891-62539910 | None:intergenic | 10.0% |
| !! | AAATATAGCATAATTAAAAT+TGG | + | chr1_3:62542148-62542167 | None:intergenic | 10.0% |
| !! | ATAATGCATATAAACTAAAT+TGG | + | chr1_3:62538865-62538884 | None:intergenic | 15.0% |
| !!! | TATTTTCTTGCAATTTTATT+TGG | - | chr1_3:62539426-62539445 | Msa0131660:intron | 15.0% |
| !!! | TTCTATCAGATTTTTAATTA+AGG | - | chr1_3:62539548-62539567 | Msa0131660:CDS | 15.0% |
| !!! | GTTTAAAACGTTTTAAATAT+TGG | - | chr1_3:62539678-62539697 | Msa0131660:intron | 15.0% |
| !!! | GATCTTTTTTTCAACTTATT+AGG | + | chr1_3:62537754-62537773 | None:intergenic | 20.0% |
| !!! | ATAAGTTGAAAAAAAGATCA+TGG | - | chr1_3:62537755-62537774 | Msa0131660:CDS | 20.0% |
| !! | ATGATAGTACAAATATTCAA+AGG | - | chr1_3:62538103-62538122 | Msa0131660:intron | 20.0% |
| !! | GAATTTAGTACAATGTTTAA+TGG | - | chr1_3:62538146-62538165 | Msa0131660:CDS | 20.0% |
| !! | GTAATTGCAGAAAATTATAA+AGG | - | chr1_3:62538184-62538203 | Msa0131660:CDS | 20.0% |
| !! | TAATATAGGAAATATGAAAG+TGG | + | chr1_3:62538316-62538335 | None:intergenic | 20.0% |
| !! | ACACGTAAGATTTATTTAAA+TGG | - | chr1_3:62538667-62538686 | Msa0131660:intron | 20.0% |
| !! | TAATATGCTTAAGATATCAA+AGG | - | chr1_3:62538732-62538751 | Msa0131660:CDS | 20.0% |
| !!! | TGTTATTTTGGATTATTTTC+TGG | - | chr1_3:62538782-62538801 | Msa0131660:CDS | 20.0% |
| !! | GCATTATTTGTTTGTATATT+TGG | - | chr1_3:62538878-62538897 | Msa0131660:intron | 20.0% |
| !! | ATAATGACATAAAAAACTTC+TGG | - | chr1_3:62538954-62538973 | Msa0131660:CDS | 20.0% |
| !!! | ATCATATTTGAAACATTTAG+AGG | + | chr1_3:62539157-62539176 | None:intergenic | 20.0% |
| !! | CTAAATGTTTCAAATATGAT+AGG | - | chr1_3:62539157-62539176 | Msa0131660:intron | 20.0% |
| !! | TAAATAGATTCAATACCATA+GGG | - | chr1_3:62539238-62539257 | Msa0131660:CDS | 20.0% |
| !! | AAATTATGAGGTTGAATTTA+TGG | - | chr1_3:62539499-62539518 | Msa0131660:CDS | 20.0% |
| !! | CAAATAATGAGATAAACAAT+TGG | - | chr1_3:62540227-62540246 | Msa0131660:intron | 20.0% |
| !! | AATGATGAATTTATTGACAA+TGG | - | chr1_3:62540295-62540314 | Msa0131660:intron | 20.0% |
| !! | AAATAAGCTATGCAATAATA+TGG | - | chr1_3:62540444-62540463 | Msa0131660:intron | 20.0% |
| !!! | ATTATTTCTTATAGAAGTAC+TGG | + | chr1_3:62540470-62540489 | None:intergenic | 20.0% |
| !! | TTACATCTTAATTAATGTTG+TGG | + | chr1_3:62540497-62540516 | None:intergenic | 20.0% |
| !! | TAAGTAGATTCAATATCATT+TGG | - | chr1_3:62540514-62540533 | Msa0131660:intron | 20.0% |
| !! | AAATATGCTATACAATAATG+TGG | - | chr1_3:62540706-62540725 | Msa0131660:intron | 20.0% |
| !! | AAATATGCTATACAATAATG+TGG | - | chr1_3:62540706-62540725 | Msa0131660:intron | 20.0% |
| !!! | AAACCTAAGTATTTTAGTTT+TGG | + | chr1_3:62541184-62541203 | None:intergenic | 20.0% |
| !! | AAATATGCTATACAATAATG+TGG | - | chr1_3:62540706-62540725 | Msa0131660:intron | 20.0% |
| !! | ATGTAGATTCAATACTATAT+TGG | - | chr1_3:62541841-62541860 | Msa0131660:intron | 20.0% |
| !! | TATTTATCAAAATCAGGTAT+GGG | - | chr1_3:62541925-62541944 | Msa0131660:intron | 20.0% |
| !!! | ATTATTGCTTATAGAAGTAT+TGG | + | chr1_3:62542063-62542082 | None:intergenic | 20.0% |
| !! | AATTTAGATATAAACGACAA+TGG | + | chr1_3:62542122-62542141 | None:intergenic | 20.0% |
| !! | GATTTTATGTCCTTTTTCTT+CGG | + | chr1_3:62537941-62537960 | None:intergenic | 25.0% |
| !!! | TATTTTACACCTTGTTTCTT+TGG | - | chr1_3:62538269-62538288 | Msa0131660:CDS | 25.0% |
| ! | AAGTGGAGAATTAAACATTT+GGG | + | chr1_3:62538424-62538443 | None:intergenic | 25.0% |
| ! | AAAGTGGAGAATTAAACATT+TGG | + | chr1_3:62538425-62538444 | None:intergenic | 25.0% |
| !! | ATTTAATGGATATACACTCA+TGG | + | chr1_3:62538459-62538478 | None:intergenic | 25.0% |
| ! | TATGAGACAATCAAATGTTA+AGG | - | chr1_3:62538510-62538529 | Msa0131660:CDS | 25.0% |
| !!! | GTATTTTTTCCATTTGTGTT+AGG | - | chr1_3:62538916-62538935 | Msa0131660:intron | 25.0% |
| ! | ATAAGGAAATGTGAAAAACT+TGG | - | chr1_3:62538986-62539005 | Msa0131660:CDS | 25.0% |
| ! | GCTTTCTACTGAAAATATAT+TGG | + | chr1_3:62539057-62539076 | None:intergenic | 25.0% |
| ! | AAATATGATAGGCAATAATG+TGG | - | chr1_3:62539168-62539187 | Msa0131660:intron | 25.0% |
| ! | GTAAATAGATTCAATACCAT+AGG | - | chr1_3:62539237-62539256 | Msa0131660:CDS | 25.0% |
| ! | AAATAGATTCAATACCATAG+GGG | - | chr1_3:62539239-62539258 | Msa0131660:CDS | 25.0% |
| ! | ATCAAAAGTCACAAATTATG+AGG | - | chr1_3:62539487-62539506 | Msa0131660:CDS | 25.0% |
| ! | AAAAATCTGATAGAACTCTA+AGG | + | chr1_3:62539543-62539562 | None:intergenic | 25.0% |
| !! | TAAGCTATTGTATTTTCATG+TGG | - | chr1_3:62539915-62539934 | Msa0131660:CDS | 25.0% |
| ! | TTCATGTGGTATCTATTTAA+AGG | - | chr1_3:62539929-62539948 | Msa0131660:CDS | 25.0% |
| ! | TCATGTGGTATCTATTTAAA+GGG | - | chr1_3:62539930-62539949 | Msa0131660:CDS | 25.0% |
| ! | TGTTGTCAATTATTCCAAAT+TGG | - | chr1_3:62540132-62540151 | Msa0131660:intron | 25.0% |
| ! | ATAAATTCATCATTGTAGAG+TGG | + | chr1_3:62540289-62540308 | None:intergenic | 25.0% |
| !! | AAATATCCAACAATTTTGCA+CGG | - | chr1_3:62540349-62540368 | Msa0131660:intron | 25.0% |
| !! | AGCTTATTTGAAACATTTGA+AGG | + | chr1_3:62540433-62540452 | None:intergenic | 25.0% |
| !!! | AAACCTAAGTATTTTGGTTT+TGG | + | chr1_3:62540656-62540675 | None:intergenic | 25.0% |
| !! | GATTGAAAACCTAAGTATTT+TGG | + | chr1_3:62540662-62540681 | None:intergenic | 25.0% |
| !!! | TTACATGTTAATTGATGATG+TGG | + | chr1_3:62540759-62540778 | None:intergenic | 25.0% |
| !!! | AAACCTAAGTATTTTGGTTT+TGG | + | chr1_3:62540656-62540675 | None:intergenic | 25.0% |
| !! | GATTGAAAACCTAAGTATTT+TGG | + | chr1_3:62540662-62540681 | None:intergenic | 25.0% |
| !!! | TTACATGTTAATTGATGATG+TGG | + | chr1_3:62540759-62540778 | None:intergenic | 25.0% |
| ! | AAATATGCTATACAATAACG+TGG | - | chr1_3:62541234-62541253 | Msa0131660:CDS | 25.0% |
| !!! | TTACATGTTAATTGATGATG+TGG | + | chr1_3:62540759-62540778 | None:intergenic | 25.0% |
| !!! | AAACCTAAGTATTTTGGTTT+TGG | + | chr1_3:62540656-62540675 | None:intergenic | 25.0% |
| !! | GATTGAAAACCTAAGTATTT+TGG | + | chr1_3:62540662-62540681 | None:intergenic | 25.0% |
| ! | AAACATGCTATACAATAATG+TGG | - | chr1_3:62541770-62541789 | Msa0131660:intron | 25.0% |
| ! | ATACCTATGAATTAATGTTG+GGG | + | chr1_3:62541823-62541842 | None:intergenic | 25.0% |
| ! | CATACCTATGAATTAATGTT+GGG | + | chr1_3:62541824-62541843 | None:intergenic | 25.0% |
| ! | ACATACCTATGAATTAATGT+TGG | + | chr1_3:62541825-62541844 | None:intergenic | 25.0% |
| ! | GAGTTGTATTTATCAAAATC+AGG | - | chr1_3:62541919-62541938 | Msa0131660:intron | 25.0% |
| ! | GTATTTATCAAAATCAGGTA+TGG | - | chr1_3:62541924-62541943 | Msa0131660:intron | 25.0% |
| ! | TAGAATATTCGAAACATTGA+TGG | + | chr1_3:62542027-62542046 | None:intergenic | 25.0% |
| ! | GAATATTCTATACAATAACG+TGG | - | chr1_3:62542037-62542056 | Msa0131660:intron | 25.0% |
| ! | ATACTTCTCCAATAATTGAT+AGG | - | chr1_3:62542081-62542100 | Msa0131660:intron | 25.0% |
| ! | TCTAATCACCTATCAATTAT+TGG | + | chr1_3:62542092-62542111 | None:intergenic | 25.0% |
| ! | GACTTAATAGATATGATGTA+TGG | - | chr1_3:62542492-62542511 | Msa0131660:CDS | 25.0% |
| TCATTCTCGAATCAAGAAAA+AGG | - | chr1_3:62537715-62537734 | Msa0131660:CDS | 30.0% | |
| AATCAAGAAAAAGGCAATGA+CGG | - | chr1_3:62537724-62537743 | Msa0131660:CDS | 30.0% | |
| AAAGCGTATGTAAGTCAATA+TGG | - | chr1_3:62537802-62537821 | Msa0131660:CDS | 30.0% | |
| ! | TCAATATGGAGAGTGTAATT+GGG | - | chr1_3:62537816-62537835 | Msa0131660:CDS | 30.0% |
| ATGAAAATCGAACTTTCTCT+AGG | - | chr1_3:62537850-62537869 | Msa0131660:CDS | 30.0% | |
| !!! | TCGGACACTTTTTTATATCT+GGG | + | chr1_3:62537915-62537934 | None:intergenic | 30.0% |
| !!! | ATCGGACACTTTTTTATATC+TGG | + | chr1_3:62537916-62537935 | None:intergenic | 30.0% |
| AAGGAACTGAACTTGATTAA+TGG | - | chr1_3:62538122-62538141 | Msa0131660:intron | 30.0% | |
| AGGAACTGAACTTGATTAAT+GGG | - | chr1_3:62538123-62538142 | Msa0131660:intron | 30.0% | |
| TAATGTAATGAGTCAAAGAG+AGG | + | chr1_3:62538346-62538365 | None:intergenic | 30.0% | |
| CATGGTACTTCAATTAAAAG+TGG | + | chr1_3:62538441-62538460 | None:intergenic | 30.0% | |
| ACTTCTGGCATATAAGAATA+AGG | - | chr1_3:62538969-62538988 | Msa0131660:CDS | 30.0% | |
| CTGCTTTCTCTATCATATAA+TGG | + | chr1_3:62539016-62539035 | None:intergenic | 30.0% | |
| ! | TTTAGCTCATTCGAAATTGA+TGG | + | chr1_3:62539082-62539101 | None:intergenic | 30.0% |
| TCAATTTCGAATGAGCTAAA+TGG | - | chr1_3:62539082-62539101 | Msa0131660:CDS | 30.0% | |
| !! | TTAATGAAGAGGAAGCATTA+TGG | + | chr1_3:62539210-62539229 | None:intergenic | 30.0% |
| ! | TTACCTGTTGATTAATGAAG+AGG | + | chr1_3:62539221-62539240 | None:intergenic | 30.0% |
| !! | AGTTGCATTTATCGATTTCA+GGG | - | chr1_3:62539309-62539328 | Msa0131660:CDS | 30.0% |
| TTGTCATTGTATATACGTGA+AGG | - | chr1_3:62540092-62540111 | Msa0131660:intron | 30.0% | |
| TGAACACATCTAAACCAATT+TGG | + | chr1_3:62540149-62540168 | None:intergenic | 30.0% | |
| ! | TTGGATATTTTCTGCTGAAA+AGG | + | chr1_3:62540339-62540358 | None:intergenic | 30.0% |
| ! | AATATCCAACAATTTTGCAC+GGG | - | chr1_3:62540350-62540369 | Msa0131660:intron | 30.0% |
| AGTTGCACTTACAAATTCTA+GGG | - | chr1_3:62540586-62540605 | Msa0131660:intron | 30.0% | |
| ! | ATCTTTTGAATCTCCAAAGT+TGG | - | chr1_3:62540679-62540698 | Msa0131660:intron | 30.0% |
| ! | AGCATATTTGAAACCAACTT+TGG | + | chr1_3:62540695-62540714 | None:intergenic | 30.0% |
| AGTTGCACATACAAATTTCA+GGG | - | chr1_3:62540848-62540867 | Msa0131660:CDS | 30.0% | |
| ! | AGCATATTTGAAACCAACTT+TGG | + | chr1_3:62540695-62540714 | None:intergenic | 30.0% |
| AGTTGCACATACAAATTTCA+GGG | - | chr1_3:62540848-62540867 | Msa0131660:CDS | 30.0% | |
| !!! | CCTAAGTATTTTAGTTTTGG+AGG | + | chr1_3:62541181-62541200 | None:intergenic | 30.0% |
| CCTCCAAAACTAAAATACTT+AGG | - | chr1_3:62541178-62541197 | Msa0131660:CDS | 30.0% | |
| ! | AGCATATTTGAAACCAACTT+TGG | + | chr1_3:62540695-62540714 | None:intergenic | 30.0% |
| AGTTGCTCTTACAAATTTCA+GGG | - | chr1_3:62541379-62541398 | Msa0131660:intron | 30.0% | |
| AGCATATTTGTAACCAACTT+TGG | + | chr1_3:62541488-62541507 | None:intergenic | 30.0% | |
| AGTTGCACTTACAAATTTCA+GGG | - | chr1_3:62541650-62541669 | Msa0131660:intron | 30.0% | |
| !!! | AAACCTAAGCATTTTGGTTT+TGG | + | chr1_3:62541720-62541739 | None:intergenic | 30.0% |
| ! | GATTGAAAACCTAAGCATTT+TGG | + | chr1_3:62541726-62541745 | None:intergenic | 30.0% |
| AAATCTGAACATTCCAAGAA+TGG | + | chr1_3:62541990-62542009 | None:intergenic | 30.0% | |
| TTCGAAACATTGATGGAATT+TGG | + | chr1_3:62542020-62542039 | None:intergenic | 30.0% | |
| AGTCACATCTATCAATTTCA+GGG | - | chr1_3:62542173-62542192 | Msa0131660:intron | 30.0% | |
| AAACCTGAATAGTCTAGAAA+TGG | + | chr1_3:62542243-62542262 | None:intergenic | 30.0% | |
| ACAAGATCGATTGATGAAAA+GGG | - | chr1_3:62542426-62542445 | Msa0131660:CDS | 30.0% | |
| TCATCTTTCTCCAAAGAAAT+TGG | + | chr1_3:62542459-62542478 | None:intergenic | 30.0% | |
| ATAGATATGATGTATGGCTT+AGG | - | chr1_3:62542498-62542517 | Msa0131660:CDS | 30.0% | |
| ! | GTCAATATGGAGAGTGTAAT+TGG | - | chr1_3:62537815-62537834 | Msa0131660:CDS | 35.0% |
| AAAATCGAACTTTCTCTAGG+TGG | - | chr1_3:62537853-62537872 | Msa0131660:CDS | 35.0% | |
| ! | TGTCCTTTTTCTTCGGTAAT+CGG | + | chr1_3:62537934-62537953 | None:intergenic | 35.0% |
| GTTGAACTGTATGCCAAAAT+TGG | - | chr1_3:62537961-62537980 | Msa0131660:CDS | 35.0% | |
| ATGCCAAAATTGGACCTAAA+TGG | - | chr1_3:62537971-62537990 | Msa0131660:CDS | 35.0% | |
| ! | AGACCATTTAGGTCCAATTT+TGG | + | chr1_3:62537977-62537996 | None:intergenic | 35.0% |
| GGAACTGAACTTGATTAATG+GGG | - | chr1_3:62538124-62538143 | Msa0131660:intron | 35.0% | |
| ! | TATAAAGGTACAGAGCTATG+AGG | - | chr1_3:62538199-62538218 | Msa0131660:CDS | 35.0% |
| TAGAGAAGACCAAAGAAACA+AGG | + | chr1_3:62538281-62538300 | None:intergenic | 35.0% | |
| AGAGAGGAAAAGGGTAATAT+AGG | + | chr1_3:62538330-62538349 | None:intergenic | 35.0% | |
| ATGAGTCAAAGAGAGGAAAA+GGG | + | chr1_3:62538339-62538358 | None:intergenic | 35.0% | |
| AATGAGTCAAAGAGAGGAAA+AGG | + | chr1_3:62538340-62538359 | None:intergenic | 35.0% | |
| TGTCTCATATAAAGTAGACG+AGG | + | chr1_3:62538499-62538518 | None:intergenic | 35.0% | |
| TCAACATGCGCATATGATAA+AGG | + | chr1_3:62538712-62538731 | None:intergenic | 35.0% | |
| AAAATAACAGTGTGTGACAC+TGG | + | chr1_3:62538771-62538790 | None:intergenic | 35.0% | |
| !! | AGTGTCACACACTGTTATTT+TGG | - | chr1_3:62538770-62538789 | Msa0131660:CDS | 35.0% |
| ATGTCATTATCAGTTCTTCC+AGG | + | chr1_3:62538944-62538963 | None:intergenic | 35.0% | |
| CTTCCTCTTCATTAATCAAC+AGG | - | chr1_3:62539215-62539234 | Msa0131660:CDS | 35.0% | |
| !! | GAGTTGCATTTATCGATTTC+AGG | - | chr1_3:62539308-62539327 | Msa0131660:CDS | 35.0% |
| !! | GTTGCATTTATCGATTTCAG+GGG | - | chr1_3:62539310-62539329 | Msa0131660:CDS | 35.0% |
| TCCTACTATGATTGCAACTA+TGG | - | chr1_3:62539339-62539358 | Msa0131660:CDS | 35.0% | |
| TCCATAGTTGCAATCATAGT+AGG | + | chr1_3:62539343-62539362 | None:intergenic | 35.0% | |
| ATATGCCTCAATTTCAGATG+TGG | - | chr1_3:62539368-62539387 | Msa0131660:intron | 35.0% | |
| !!! | TTGAGCAGTTTTAGACCATT+TGG | + | chr1_3:62539398-62539417 | None:intergenic | 35.0% |
| ACAAACGATCTAACACTGAA+TGG | + | chr1_3:62539771-62539790 | None:intergenic | 35.0% | |
| TCGTTTGTATAAGAGAGAAG+AGG | - | chr1_3:62539783-62539802 | Msa0131660:CDS | 35.0% | |
| CGTTTGTATAAGAGAGAAGA+GGG | - | chr1_3:62539784-62539803 | Msa0131660:CDS | 35.0% | |
| GTTTGTATAAGAGAGAAGAG+GGG | - | chr1_3:62539785-62539804 | Msa0131660:CDS | 35.0% | |
| ! | GCAATTCAATCTTTTCGTAG+AGG | - | chr1_3:62539811-62539830 | Msa0131660:CDS | 35.0% |
| ! | ATCTTTTCGTAGAGGATGTT+AGG | - | chr1_3:62539819-62539838 | Msa0131660:CDS | 35.0% |
| ! | TCTTTTCGTAGAGGATGTTA+GGG | - | chr1_3:62539820-62539839 | Msa0131660:CDS | 35.0% |
| !! | CGTGTCACACAATGTTATTT+TGG | - | chr1_3:62540050-62540069 | Msa0131660:intron | 35.0% |
| CATTGTATATACGTGAAGGA+AGG | - | chr1_3:62540096-62540115 | Msa0131660:intron | 35.0% | |
| TTTCATCTGTGTTAGTTGTC+TGG | - | chr1_3:62540199-62540218 | Msa0131660:intron | 35.0% | |
| ! | TTCTGCTGAAAAGGTTCTTT+TGG | + | chr1_3:62540330-62540349 | None:intergenic | 35.0% |
| TTTATCCCGTGCAAAATTGT+TGG | + | chr1_3:62540358-62540377 | None:intergenic | 35.0% | |
| ! | ACAATTTTGCACGGGATAAA+TGG | - | chr1_3:62540358-62540377 | Msa0131660:intron | 35.0% |
| GAGTTGCACTTACAAATTCT+AGG | - | chr1_3:62540585-62540604 | Msa0131660:intron | 35.0% | |
| GTTGCACTTACAAATTCTAG+GGG | - | chr1_3:62540587-62540606 | Msa0131660:intron | 35.0% | |
| !!! | CCTAAGTATTTTGGTTTTGG+AGG | + | chr1_3:62540653-62540672 | None:intergenic | 35.0% |
| CCTCCAAAACCAAAATACTT+AGG | - | chr1_3:62540650-62540669 | Msa0131660:intron | 35.0% | |
| GAGTTGCACATACAAATTTC+AGG | - | chr1_3:62540847-62540866 | Msa0131660:CDS | 35.0% | |
| GTTGCACATACAAATTTCAG+GGG | - | chr1_3:62540849-62540868 | Msa0131660:CDS | 35.0% | |
| ! | TGGAACTTCTTTTATGACTG+AGG | - | chr1_3:62540610-62540629 | Msa0131660:intron | 35.0% |
| !!! | CCTAAGTATTTTGGTTTTGG+AGG | + | chr1_3:62540653-62540672 | None:intergenic | 35.0% |
| CCTCCAAAACCAAAATACTT+AGG | - | chr1_3:62540650-62540669 | Msa0131660:intron | 35.0% | |
| ATCTTCTGAATCTCCAAAGT+TGG | - | chr1_3:62540941-62540960 | Msa0131660:intron | 35.0% | |
| GAGTTGCACATACAAATTTC+AGG | - | chr1_3:62540847-62540866 | Msa0131660:CDS | 35.0% | |
| GTTGCACATACAAATTTCAG+GGG | - | chr1_3:62540849-62540868 | Msa0131660:CDS | 35.0% | |
| ATCTTCTGAATCTCCAAAGT+TGG | - | chr1_3:62540941-62540960 | Msa0131660:intron | 35.0% | |
| GAGTTGCTCTTACAAATTTC+AGG | - | chr1_3:62541378-62541397 | Msa0131660:intron | 35.0% | |
| GTTGCTCTTACAAATTTCAG+GGG | - | chr1_3:62541380-62541399 | Msa0131660:intron | 35.0% | |
| !!! | CCTAAGTATTTTGGTTTTGG+AGG | + | chr1_3:62540653-62540672 | None:intergenic | 35.0% |
| CCTCCAAAACCAAAATACTT+AGG | - | chr1_3:62540650-62540669 | Msa0131660:intron | 35.0% | |
| ATCTTCTGAATCTCCAAAGT+TGG | - | chr1_3:62540941-62540960 | Msa0131660:intron | 35.0% | |
| GAGTTGCACTTACAAATTTC+AGG | - | chr1_3:62541649-62541668 | Msa0131660:intron | 35.0% | |
| GTTGCACTTACAAATTTCAG+GGG | - | chr1_3:62541651-62541670 | Msa0131660:intron | 35.0% | |
| ! | TCGAACTTCTTTTATGACTG+AGG | - | chr1_3:62541674-62541693 | Msa0131660:intron | 35.0% |
| CTTCCCCAACATTAATTCAT+AGG | - | chr1_3:62541817-62541836 | Msa0131660:intron | 35.0% | |
| GAGTCACATCTATCAATTTC+AGG | - | chr1_3:62542172-62542191 | Msa0131660:intron | 35.0% | |
| GTCACATCTATCAATTTCAG+GGG | - | chr1_3:62542174-62542193 | Msa0131660:intron | 35.0% | |
| AATAGTCTAGAAATGGAGGT+AGG | + | chr1_3:62542236-62542255 | None:intergenic | 35.0% | |
| !! | TTTGAGTCTTCTGAAACCTT+TGG | + | chr1_3:62542381-62542400 | None:intergenic | 35.0% |
| GACAAGATCGATTGATGAAA+AGG | - | chr1_3:62542425-62542444 | Msa0131660:CDS | 35.0% | |
| CAAGATCGATTGATGAAAAG+GGG | - | chr1_3:62542427-62542446 | Msa0131660:CDS | 35.0% | |
| ATATGATGTATGGCTTAGGT+TGG | - | chr1_3:62542502-62542521 | Msa0131660:CDS | 35.0% | |
| ! | GCAAAAGTTGTCGACTAAGA+TGG | - | chr1_3:62537875-62537894 | Msa0131660:CDS | 40.0% |
| TGTCCGATTACCGAAGAAAA+AGG | - | chr1_3:62537928-62537947 | Msa0131660:CDS | 40.0% | |
| TGAGCTATTCGAGACCATTT+AGG | + | chr1_3:62537988-62538007 | None:intergenic | 40.0% | |
| AAATGTAGCCTCCCTAGTAA+GGG | + | chr1_3:62538584-62538603 | None:intergenic | 40.0% | |
| TAAATGTAGCCTCCCTAGTA+AGG | + | chr1_3:62538585-62538604 | None:intergenic | 40.0% | |
| TGCGCATATGATAAAGGACT+TGG | + | chr1_3:62538706-62538725 | None:intergenic | 40.0% | |
| GATAGAGAAAGCAGTATGAG+TGG | - | chr1_3:62539022-62539041 | Msa0131660:CDS | 40.0% | |
| TGTGTGCATATAATCCCCTA+TGG | + | chr1_3:62539256-62539275 | None:intergenic | 40.0% | |
| ! | GAGTTCCACATCTGAAATTG+AGG | + | chr1_3:62539376-62539395 | None:intergenic | 40.0% |
| TTCAGATGTGGAACTCCAAA+TGG | - | chr1_3:62539380-62539399 | Msa0131660:intron | 40.0% | |
| ! | ATGGTCTAAAACTGCTCAAG+AGG | - | chr1_3:62539399-62539418 | Msa0131660:intron | 40.0% |
| ! | GAAAAGAAGCGTGTAAGAGA+TGG | - | chr1_3:62540259-62540278 | Msa0131660:intron | 40.0% |
| GCATAGTTGAGATATGCACT+CGG | + | chr1_3:62540408-62540427 | None:intergenic | 40.0% | |
| ! | TTCTTTTATGACTGACGCCT+TGG | - | chr1_3:62540616-62540635 | Msa0131660:intron | 40.0% |
| ! | TTCTTTTATGACTGAGGCCA+TGG | - | chr1_3:62540878-62540897 | Msa0131660:CDS | 40.0% |
| ! | CGGAACTTCTTTTATGACTG+AGG | - | chr1_3:62541138-62541157 | Msa0131660:CDS | 40.0% |
| ! | TTCTTTTATGACTGAGGCCA+TGG | - | chr1_3:62540878-62540897 | Msa0131660:CDS | 40.0% |
| TGGAGGTAGATTTGATTCCA+TGG | + | chr1_3:62541164-62541183 | None:intergenic | 40.0% | |
| ! | TCGAACTTCTTTTATGACCG+AGG | - | chr1_3:62541403-62541422 | Msa0131660:intron | 40.0% |
| ! | TTCTTTTATGACTGAGGCCT+TGG | - | chr1_3:62541680-62541699 | Msa0131660:intron | 40.0% |
| TGGAGGTAGATTTGATTCCA+AGG | + | chr1_3:62541164-62541183 | None:intergenic | 40.0% | |
| !!! | CCTAAGCATTTTGGTTTTGG+AGG | + | chr1_3:62541717-62541736 | None:intergenic | 40.0% |
| CCTCCAAAACCAAAATGCTT+AGG | - | chr1_3:62541714-62541733 | Msa0131660:intron | 40.0% | |
| ATCTTCTGAATCTCCAACGT+TGG | - | chr1_3:62541743-62541762 | Msa0131660:intron | 40.0% | |
| ! | AGCATGTTTGAAACCAACGT+TGG | + | chr1_3:62541759-62541778 | None:intergenic | 40.0% |
| ! | ATGATTGCTTGTAGGAGTGT+TGG | + | chr1_3:62541796-62541815 | None:intergenic | 40.0% |
| ! | TGGGACTCCTTTTATGACTA+TGG | - | chr1_3:62541944-62541963 | Msa0131660:intron | 40.0% |
| ! | TCCTTTTATGACTATGGCCA+TGG | - | chr1_3:62541950-62541969 | Msa0131660:intron | 40.0% |
| TCCATGGCCATAGTCATAAA+AGG | + | chr1_3:62541954-62541973 | None:intergenic | 40.0% | |
| ATCAGATTTGCCTCCATTCT+TGG | - | chr1_3:62541974-62541993 | Msa0131660:intron | 40.0% | |
| TCTGAACATTCCAAGAATGG+AGG | + | chr1_3:62541987-62542006 | None:intergenic | 40.0% | |
| CCTGAATAGTCTAGAAATGG+AGG | + | chr1_3:62542240-62542259 | None:intergenic | 40.0% | |
| ! | CCTCCATTTCTAGACTATTC+AGG | - | chr1_3:62542237-62542256 | Msa0131660:intron | 40.0% |
| GGTGGATACTTATGTATCAG+CGG | + | chr1_3:62542282-62542301 | None:intergenic | 40.0% | |
| GATACATAAGTATCCACCTG+AGG | - | chr1_3:62542284-62542303 | Msa0131660:intron | 40.0% | |
| ! | AAGAATCTGGTTCAAACGAC+TGG | + | chr1_3:62542320-62542339 | None:intergenic | 40.0% |
| ATCCATGTTCGATACACCAA+AGG | - | chr1_3:62542362-62542381 | Msa0131660:intron | 40.0% | |
| ! | AACCTTTGGTGTATCGAACA+TGG | + | chr1_3:62542367-62542386 | None:intergenic | 40.0% |
| TTCCATTTGTGTTAGGTGCC+TGG | - | chr1_3:62538923-62538942 | Msa0131660:intron | 45.0% | |
| TTCCAGGCACCTAACACAAA+TGG | + | chr1_3:62538928-62538947 | None:intergenic | 45.0% | |
| GAGGCTGCATAATTGAGACA+TGG | + | chr1_3:62539138-62539157 | None:intergenic | 45.0% | |
| ! | GCACTTACAAATTCTAGGGG+TGG | - | chr1_3:62540590-62540609 | Msa0131660:intron | 45.0% |
| TGGAGGCAGATTTGATTCCA+AGG | + | chr1_3:62540636-62540655 | None:intergenic | 45.0% | |
| GCACATACAAATTTCAGGGG+TGG | - | chr1_3:62540852-62540871 | Msa0131660:CDS | 45.0% | |
| TGGAGGCAGATTTGATTCCA+TGG | + | chr1_3:62540636-62540655 | None:intergenic | 45.0% | |
| GCACATACAAATTTCAGGGG+CGG | - | chr1_3:62540852-62540871 | Msa0131660:CDS | 45.0% | |
| ! | TTCTTTTATGACCGAGGCCT+TGG | - | chr1_3:62541409-62541428 | Msa0131660:intron | 45.0% |
| CAGATTTGATTCCAAGGCCT+CGG | + | chr1_3:62541423-62541442 | None:intergenic | 45.0% | |
| TGGAGGCAGATTTGATTCCA+AGG | + | chr1_3:62540636-62540655 | None:intergenic | 45.0% | |
| ! | GGGGAAGTATGATTGCTTGT+AGG | + | chr1_3:62541804-62541823 | None:intergenic | 45.0% |
| TGGAGGCAAATCTGATTCCA+TGG | + | chr1_3:62541970-62541989 | None:intergenic | 45.0% | |
| CCACTGTTGCATGAAGAATC+TGG | + | chr1_3:62542333-62542352 | None:intergenic | 45.0% | |
| CCAGATTCTTCATGCAACAG+TGG | - | chr1_3:62542330-62542349 | Msa0131660:intron | 45.0% | |
| GGGGAAGACACCAATTTCTT+TGG | - | chr1_3:62542446-62542465 | Msa0131660:CDS | 45.0% | |
| !!! | TAATTTTTTTAAGAATTTAA+TGG | + | chr1_3:62538473-62538492 | None:intergenic | 5.0% |
| TAGCAACCCACACCCTTACT+AGG | - | chr1_3:62538569-62538588 | Msa0131660:intron | 50.0% | |
| AGCAACCCACACCCTTACTA+GGG | - | chr1_3:62538570-62538589 | Msa0131660:intron | 50.0% | |
| TGGAGGTAGGTCTGATTCTG+TGG | + | chr1_3:62542223-62542242 | None:intergenic | 50.0% | |
| ! | TCTGGTTCAAACGACTGGCA+TGG | + | chr1_3:62542315-62542334 | None:intergenic | 50.0% |
| AACCCACACCCTTACTAGGG+AGG | - | chr1_3:62538573-62538592 | Msa0131660:intron | 55.0% | |
| ! | AGCCTCCCTAGTAAGGGTGT+GGG | + | chr1_3:62538578-62538597 | None:intergenic | 55.0% |
| TAGCCTCCCTAGTAAGGGTG+TGG | + | chr1_3:62538579-62538598 | None:intergenic | 55.0% | |
| TGGCATGGAATCTCCTCAGG+TGG | + | chr1_3:62542300-62542319 | None:intergenic | 55.0% | |
| GACTGGCATGGAATCTCCTC+AGG | + | chr1_3:62542303-62542322 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 62537709 | 62542539 | 62537709 | ID=Msa0131660;Name=Msa0131660 |
| chr1_3 | mRNA | 62537709 | 62542539 | 62537709 | ID=Msa0131660-mRNA-1;Parent=Msa0131660;Name=Msa0131660-mRNA-1;_AED=0.23;_eAED=0.24;_QI=0|0|0|0.90|1|1|11|0|723 |
| chr1_3 | exon | 62542405 | 62542539 | 62542405 | ID=Msa0131660-mRNA-1:exon:20876;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62541012 | 62541310 | 62541012 | ID=Msa0131660-mRNA-1:exon:20875;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62540828 | 62540918 | 62540828 | ID=Msa0131660-mRNA-1:exon:20874;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62539736 | 62540034 | 62539736 | ID=Msa0131660-mRNA-1:exon:20873;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62539474 | 62539641 | 62539474 | ID=Msa0131660-mRNA-1:exon:20872;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62539212 | 62539379 | 62539212 | ID=Msa0131660-mRNA-1:exon:20871;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62538946 | 62539113 | 62538946 | ID=Msa0131660-mRNA-1:exon:20870;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62538681 | 62538848 | 62538681 | ID=Msa0131660-mRNA-1:exon:20869;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62538410 | 62538577 | 62538410 | ID=Msa0131660-mRNA-1:exon:20868;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62538146 | 62538307 | 62538146 | ID=Msa0131660-mRNA-1:exon:20867;Parent=Msa0131660-mRNA-1 |
| chr1_3 | exon | 62537709 | 62538054 | 62537709 | ID=Msa0131660-mRNA-1:exon:20866;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62542405 | 62542539 | 62542405 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62541012 | 62541310 | 62541012 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62540828 | 62540918 | 62540828 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62539736 | 62540034 | 62539736 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62539474 | 62539641 | 62539474 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62539212 | 62539379 | 62539212 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62538946 | 62539113 | 62538946 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62538681 | 62538848 | 62538681 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62538410 | 62538577 | 62538410 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62538146 | 62538307 | 62538146 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| chr1_3 | CDS | 62537709 | 62538054 | 62537709 | ID=Msa0131660-mRNA-1:cds;Parent=Msa0131660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
