AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132350 MtrunA17_Chr1g0201311 98.366 306 5 0 1 306 1 306 0.0 638
Msa0132350 MtrunA17_Chr1g0201621 98.039 306 6 0 1 306 1 306 0.0 634
Msa0132350 MtrunA17_Chr3g0125251 41.453 234 134 3 12 244 1253 1484 1.01e-55 194
Msa0132350 MtrunA17_Chr6g0477001 43.519 216 118 4 11 226 42 253 5.27e-50 169
Msa0132350 MtrunA17_Chr2g0305371 34.677 248 145 5 1 248 266 496 2.96e-42 152
Msa0132350 MtrunA17_Chr5g0403241 35.503 169 94 2 66 219 1334 1502 3.77e-24 102
Msa0132350 MtrunA17_Chr2g0297191 36.429 140 88 1 80 219 1028 1166 6.13e-24 102
Msa0132350 MtrunA17_Chr4g0075321 34.706 170 92 3 67 219 892 1059 7.30e-24 102
Msa0132350 MtrunA17_Chr5g0401921 35.928 167 91 3 44 203 674 831 1.01e-21 95.5
Msa0132350 MtrunA17_Chr7g0235081 41.525 118 69 0 85 202 195 312 1.65e-21 93.2
Msa0132350 MtrunA17_Chr8g0347071 36.424 151 92 3 76 223 799 948 3.81e-21 94.0
Msa0132350 MtrunA17_Chr8g0354821 32.836 201 97 6 61 224 489 688 3.88e-21 93.6
Msa0132350 MtrunA17_Chr3g0126701 36.000 150 92 3 78 224 915 1063 5.99e-21 93.2
Msa0132350 MtrunA17_Chr7g0275611 37.908 153 85 4 78 224 816 964 1.14e-20 92.4
Msa0132350 MtrunA17_Chr8g0373821 34.337 166 95 3 67 219 369 533 1.21e-20 92.0
Msa0132350 MtrunA17_Chr1g0147121 35.526 152 94 3 76 224 884 1034 1.92e-20 91.7
Msa0132350 MtrunA17_Chr7g0221611 36.943 157 89 3 90 245 911 1058 2.08e-20 91.7
Msa0132350 MtrunA17_Chr7g0255181 32.065 184 103 5 61 223 522 704 4.52e-20 90.5
Msa0132350 MtrunA17_Chr5g0399801 34.343 198 92 8 61 223 894 1088 5.28e-20 90.5
Msa0132350 MtrunA17_Chr1g0194631 36.923 130 80 1 73 202 599 726 2.28e-19 88.6
Msa0132350 MtrunA17_Chr1g0149611 35.461 141 86 2 88 223 367 507 3.36e-19 87.8
Msa0132350 MtrunA17_Chr4g0003511 31.658 199 90 7 61 220 857 1048 4.15e-19 87.8
Msa0132350 MtrunA17_Chr1g0149581 35.461 141 86 2 88 223 1525 1665 6.02e-19 87.4
Msa0132350 MtrunA17_Chr1g0170651 36.943 157 80 6 75 220 394 542 7.47e-19 86.7
Msa0132350 MtrunA17_Chr4g0003501 31.606 193 96 7 61 220 762 951 1.13e-17 83.6
Msa0132350 MtrunA17_Chr3g0080761 31.980 197 95 7 61 219 464 659 3.74e-17 82.0
Msa0132350 MtrunA17_Chr1g0201321 97.222 36 1 0 271 306 1 36 3.48e-16 72.4
Msa0132350 MtrunA17_Chr6g0460921 32.667 150 85 4 67 200 247 396 8.82e-16 77.4
Msa0132350 MtrunA17_Chr7g0232981 28.788 198 100 8 37 203 301 488 1.45e-14 73.9
Msa0132350 MtrunA17_Chr7g0270001 35.088 114 72 1 90 203 154 265 1.94e-14 72.4
Msa0132350 MtrunA17_Chr7g0252211 30.198 202 101 7 61 223 556 756 5.53e-13 69.3
Msa0132350 MtrunA17_Chr1g0183321 29.050 179 95 6 67 219 569 741 7.83e-13 68.9
Msa0132350 MtrunA17_Chr6g0476121 30.198 202 101 7 61 223 442 642 8.19e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132350 AT1G76710.2 74.216 287 70 1 7 289 12 298 4.84e-160 455
Msa0132350 AT1G76710.1 74.216 287 70 1 7 289 12 298 4.84e-160 455
Msa0132350 AT1G76710.4 74.216 287 70 1 7 289 12 298 1.99e-159 454
Msa0132350 AT1G76710.3 74.216 287 70 1 7 289 12 298 2.02e-159 455
Msa0132350 AT1G77300.2 42.060 233 127 4 15 244 958 1185 8.59e-57 197
Msa0132350 AT1G77300.1 42.060 233 127 4 15 244 958 1185 1.08e-56 197
Msa0132350 AT4G30860.1 37.387 222 128 4 7 228 259 469 5.82e-42 151
Msa0132350 AT3G59960.3 42.775 173 85 2 67 226 81 252 3.12e-35 129
Msa0132350 AT3G59960.2 42.775 173 85 2 67 226 81 252 3.12e-35 129
Msa0132350 AT3G59960.4 42.775 173 85 2 67 226 81 252 3.12e-35 129
Msa0132350 AT2G44150.1 36.245 229 117 4 12 226 44 257 4.52e-35 130
Msa0132350 AT3G59960.1 42.775 173 85 2 67 226 81 252 1.10e-34 129
Msa0132350 AT5G42400.7 42.742 124 70 1 96 219 1261 1383 7.04e-26 108
Msa0132350 AT5G42400.2 42.742 124 70 1 96 219 1261 1383 7.04e-26 108
Msa0132350 AT5G42400.8 42.742 124 70 1 96 219 1261 1383 7.04e-26 108
Msa0132350 AT5G42400.5 42.742 124 70 1 96 219 1261 1383 7.04e-26 108
Msa0132350 AT5G42400.4 42.742 124 70 1 96 219 1261 1383 7.04e-26 108
Msa0132350 AT5G42400.1 42.742 124 70 1 96 219 1261 1383 7.04e-26 108
Msa0132350 AT5G42400.3 42.742 124 70 1 96 219 1261 1383 7.04e-26 108
Msa0132350 AT5G42400.6 42.742 124 70 1 96 219 1261 1383 7.04e-26 108
Msa0132350 AT1G05830.2 36.257 171 96 5 68 234 900 1061 1.22e-21 95.9
Msa0132350 AT1G05830.4 36.257 171 96 5 68 234 900 1061 1.22e-21 95.9
Msa0132350 AT1G05830.1 36.257 171 96 5 68 234 900 1061 1.22e-21 95.9
Msa0132350 AT1G05830.3 36.257 171 96 5 68 234 900 1061 1.22e-21 95.9
Msa0132350 AT3G03750.2 36.667 180 94 6 59 219 167 345 2.84e-21 92.8
Msa0132350 AT2G35160.2 36.872 179 87 8 61 223 625 793 3.25e-21 94.4
Msa0132350 AT2G35160.3 36.872 179 87 8 61 223 625 793 3.25e-21 94.4
Msa0132350 AT2G35160.1 36.872 179 87 8 61 223 625 793 3.25e-21 94.4
Msa0132350 AT2G35160.4 36.872 179 87 8 61 223 625 793 3.25e-21 94.4
Msa0132350 AT2G35160.5 36.872 179 87 8 61 223 589 757 3.40e-21 94.4
Msa0132350 AT4G27910.1 36.184 152 93 3 76 224 877 1027 3.95e-21 94.4
Msa0132350 AT1G02580.1 33.728 169 95 3 48 211 518 674 6.91e-21 93.2
Msa0132350 AT2G23740.3 37.255 153 75 4 66 200 1206 1355 1.63e-20 92.4
Msa0132350 AT2G23740.6 37.255 153 75 4 66 200 1206 1355 1.63e-20 92.4
Msa0132350 AT2G23740.2 37.255 153 75 4 66 200 1206 1355 1.63e-20 92.4
Msa0132350 AT2G23740.1 37.255 153 75 4 66 200 1199 1348 1.67e-20 92.4
Msa0132350 AT3G61740.2 37.255 153 89 4 76 223 831 981 2.84e-20 91.7
Msa0132350 AT2G23380.1 38.168 131 79 1 73 203 741 869 3.01e-20 91.7
Msa0132350 AT3G61740.1 37.255 153 89 4 76 223 867 1017 3.09e-20 91.7
Msa0132350 AT2G23380.2 38.168 131 79 1 73 203 514 642 4.13e-20 90.9
Msa0132350 AT2G31650.1 35.673 171 97 5 68 234 879 1040 9.15e-20 90.1
Msa0132350 AT4G02020.1 36.154 130 81 1 73 202 696 823 7.34e-19 87.4
Msa0132350 AT5G53430.1 35.333 150 93 3 78 224 895 1043 7.86e-19 87.4
Msa0132350 AT5G04940.2 30.653 199 101 7 61 224 474 670 1.58e-17 83.6
Msa0132350 AT5G04940.1 30.653 199 101 7 61 224 474 670 1.58e-17 83.6
Msa0132350 AT1G17770.1 31.053 190 95 7 65 219 500 688 1.42e-16 80.5
Msa0132350 AT2G22740.2 32.512 203 96 8 58 223 591 789 1.85e-16 80.1
Msa0132350 AT2G22740.1 32.512 203 96 8 58 223 591 789 1.85e-16 80.1
Msa0132350 AT2G24740.1 28.272 191 101 5 69 224 566 755 1.39e-14 74.7
Msa0132350 AT2G23740.4 39.286 112 51 3 66 163 1206 1314 1.70e-14 74.7
Msa0132350 AT2G23740.5 39.286 112 51 3 66 163 1206 1314 1.70e-14 74.7
Msa0132350 AT3G04380.6 28.125 192 100 7 67 229 258 440 5.62e-12 66.6
Msa0132350 AT3G04380.2 28.125 192 100 7 67 229 258 440 5.91e-12 66.2
Msa0132350 AT3G04380.4 28.125 192 100 7 67 229 285 467 6.24e-12 66.2
Msa0132350 AT3G04380.1 28.125 192 100 7 67 229 285 467 6.68e-12 66.2
Msa0132350 AT3G04380.3 28.125 192 100 7 67 229 269 451 7.77e-12 65.9
Msa0132350 AT3G04380.5 28.125 192 100 7 67 229 242 424 7.81e-12 65.9
Msa0132350 AT4G02020.4 31.731 104 69 1 73 176 696 797 6.33e-11 63.5

Find 85 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCCGAGGGTGGGGTCTTT+TGG 0.223348 1_3:-63336495 Msa0132350:CDS
GACCTTGAGTTTCATAAGTA+TGG 0.226901 1_3:+63336287 None:intergenic
TGAATAGGGAATTTGATTTC+TGG 0.240243 1_3:+63339690 None:intergenic
TTTGGCTGATGAGGAAATTA+AGG 0.256975 1_3:-63336477 Msa0132350:intron
TCTCAGGTTATTCATTGATA+TGG 0.257467 1_3:-63339554 Msa0132350:intron
CAAGATTTATAAACCATTCC+TGG 0.303845 1_3:-63336113 Msa0132350:intron
CAATAAGAGGAATGGGAAAA+TGG 0.327420 1_3:+63339588 None:intergenic
AGAAGCGAGAAAAGGGGTTT+GGG 0.332370 1_3:+63339624 None:intergenic
ATTCAACCACTGAATTCAAT+TGG 0.332627 1_3:-63334740 Msa0132350:CDS
GCACTGGAAGATATTCCTAT+TGG 0.334570 1_3:-63335892 Msa0132350:CDS
AGCAGGAAGATACTTATCTA+TGG 0.338088 1_3:-63335301 Msa0132350:intron
CAAACTGTGAGACAAGAAAA+TGG 0.346413 1_3:-63335948 Msa0132350:CDS
ATGATCGAAGAAATTTGAAT+AGG 0.356481 1_3:+63339675 None:intergenic
CAGAAGCGAGAAAAGGGGTT+TGG 0.375404 1_3:+63339623 None:intergenic
CTGAATTCAATTGGGATCAA+TGG 0.406898 1_3:-63334731 Msa0132350:CDS
TGATCGAAGAAATTTGAATA+GGG 0.412142 1_3:+63339676 None:intergenic
GAAGCGAGAAAAGGGGTTTG+GGG 0.412473 1_3:+63339625 None:intergenic
TCCTCCGCAGAGTCATATAA+AGG 0.419793 1_3:+63334854 None:intergenic
CCCGACAGTGCCTGTGGAGA+TGG 0.424956 1_3:-63337271 Msa0132350:CDS
AAGCGAGAAAAGGGGTTTGG+GGG 0.426634 1_3:+63339626 None:intergenic
CTCAAATGTTCTGAATTCCT+TGG 0.432418 1_3:-63335799 Msa0132350:CDS
ATGCCACAAGGGCAAAATCC+AGG 0.434511 1_3:+63337214 None:intergenic
AGCTTGCAGAAGCGAGAAAA+GGG 0.459582 1_3:+63339617 None:intergenic
TATTCCTATTGGAACTGAAC+TGG 0.465129 1_3:-63335881 Msa0132350:CDS
ATAAGTATGGGATCTGCGCT+TGG 0.465834 1_3:+63336300 None:intergenic
TTGAAGAGGTTTACCAGGAA+TGG 0.476963 1_3:+63336100 None:intergenic
ACCAGCACTGAATGCACCCC+TGG 0.480052 1_3:-63337232 Msa0132350:CDS
TATGCCAGTTCAGTTCCAAT+AGG 0.481653 1_3:+63335877 None:intergenic
TCAATTGGGATCAATGGCTT+AGG 0.484206 1_3:-63334725 Msa0132350:CDS
AAAACTGAAGGCCGAGGGTG+GGG 0.484563 1_3:-63336503 Msa0132350:CDS
GAACAAAAGTTGGCAATAAG+AGG 0.484609 1_3:+63339575 None:intergenic
ACCTTGAGTTTCATAAGTAT+GGG 0.487157 1_3:+63336288 None:intergenic
GCGAGAAAAGGGGTTTGGGG+GGG 0.487175 1_3:+63339628 None:intergenic
TTCAACCACTGAATTCAATT+GGG 0.488608 1_3:-63334739 Msa0132350:CDS
AGCTTTCAGTATAATAGCCA+TGG 0.489595 1_3:+63334793 None:intergenic
TCTATCGATGCAACTAGAAA+AGG 0.490560 1_3:-63336144 Msa0132350:CDS
AAAGTTGGCAATAAGAGGAA+TGG 0.497255 1_3:+63339580 None:intergenic
AAGTTGGCAATAAGAGGAAT+GGG 0.502123 1_3:+63339581 None:intergenic
CCATCTCCACAGGCACTGTC+GGG 0.506283 1_3:+63337271 None:intergenic
AAGCTTGCAGAAGCGAGAAA+AGG 0.513314 1_3:+63339616 None:intergenic
CCCATCTCCACAGGCACTGT+CGG 0.518933 1_3:+63337270 None:intergenic
AGCGAGAAAAGGGGTTTGGG+GGG 0.519042 1_3:+63339627 None:intergenic
ACCAAGTTATTTAAAACTGA+AGG 0.520954 1_3:-63336515 Msa0132350:CDS
AAGAGTTGGAATATTTGCAC+TGG 0.522066 1_3:-63335908 Msa0132350:CDS
CCGACAGTGCCTGTGGAGAT+GGG 0.523601 1_3:-63337270 Msa0132350:CDS
TCCAGGGGTGCATTCAGTGC+TGG 0.526955 1_3:+63337231 None:intergenic
TGCCACAAGGGCAAAATCCA+GGG 0.530653 1_3:+63337215 None:intergenic
AATAACCTGAGAACAAAAGT+TGG 0.533960 1_3:+63339565 None:intergenic
AATGGTTTATAAATCTTGCA+AGG 0.536559 1_3:+63336118 None:intergenic
CAGCCAAAAGACCCCACCCT+CGG 0.537785 1_3:+63336492 None:intergenic
ACAAGAAAATGGAATGTCAT+GGG 0.544715 1_3:-63335937 Msa0132350:CDS
GCAGGAAGATACTTATCTAT+GGG 0.553275 1_3:-63335300 Msa0132350:intron
TGATTGATATGAATGTATTG+AGG 0.557044 1_3:+63339406 None:intergenic
TGAATGGTTTGGAGGTGCAA+AGG 0.560782 1_3:-63335842 Msa0132350:CDS
TAAAACTGAAGGCCGAGGGT+GGG 0.562493 1_3:-63336504 Msa0132350:CDS
GACAAGAAAATGGAATGTCA+TGG 0.568296 1_3:-63335938 Msa0132350:CDS
TTGATCCCAATTGAATTCAG+TGG 0.569284 1_3:+63334734 None:intergenic
GCATAAGAAGCAGAAGGAGG+AGG 0.570658 1_3:-63337332 Msa0132350:CDS
ATATTGCTATATGTGAATGC+AGG 0.572676 1_3:-63337309 Msa0132350:CDS
TATGGGAAGATGATGATGAC+AGG 0.584972 1_3:-63335283 Msa0132350:intron
TTCCTTGGAGCAAAATCTCG+TGG 0.586918 1_3:-63335784 Msa0132350:CDS
TTATTTAAAACTGAAGGCCG+AGG 0.589346 1_3:-63336509 Msa0132350:CDS
TTTAAAACAGTGGACTCCGA+TGG 0.593496 1_3:+63334764 None:intergenic
GATGAACTCACGTCAAATGT+TGG 0.593891 1_3:-63334833 Msa0132350:CDS
ACTGAAAGCTGAAGAACCAT+CGG 0.600098 1_3:-63334780 Msa0132350:CDS
GTGCAGGCATAAGAAGCAGA+AGG 0.601872 1_3:-63337338 Msa0132350:intron
TGGACAGAGTGAACAATCCA+TGG 0.605363 1_3:-63334810 Msa0132350:CDS
TTAAAACTGAAGGCCGAGGG+TGG 0.605393 1_3:-63336505 Msa0132350:CDS
TCCTTTATATGACTCTGCGG+AGG 0.618388 1_3:-63334855 Msa0132350:CDS
TATTTAAAACTGAAGGCCGA+GGG 0.619845 1_3:-63336508 Msa0132350:CDS
TCCCATACTTATGAAACTCA+AGG 0.623281 1_3:-63336289 Msa0132350:intron
GCAAAGGTTCGCTGCCTCTG+TGG 0.623435 1_3:-63335826 Msa0132350:CDS
ATTTAGACACCCATCTCCAC+AGG 0.625505 1_3:+63337261 None:intergenic
GGCAAATCTTCAGCAGCATG+AGG 0.632645 1_3:+63339427 None:intergenic
CAGTTTGTCATTGAATACTG+TGG 0.640591 1_3:-63336346 Msa0132350:CDS
CAAGAAAATGGAATGTCATG+GGG 0.642373 1_3:-63335936 Msa0132350:CDS
GAACTCACGTCAAATGTTGG+TGG 0.647867 1_3:-63334830 Msa0132350:CDS
CAGGCATAAGAAGCAGAAGG+AGG 0.647886 1_3:-63337335 Msa0132350:CDS
TGGTTGAATATTTAAAACAG+TGG 0.648383 1_3:+63334754 None:intergenic
GATGATCCCGACAGTGCCTG+TGG 0.661300 1_3:-63337277 Msa0132350:CDS
AACATTTGAGCGCACCACAG+AGG 0.676482 1_3:+63335812 None:intergenic
GCTTGCAGAAGCGAGAAAAG+GGG 0.677415 1_3:+63339618 None:intergenic
GCCACAAGGGCAAAATCCAG+GGG 0.678890 1_3:+63337216 None:intergenic
AAGAAAATGGAATGTCATGG+GGG 0.698806 1_3:-63335935 Msa0132350:CDS
AATTCCTTTATATGACTCTG+CGG 0.704826 1_3:-63334858 Msa0132350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTCTTTTGATATATTA+CGG - chr1_3:63338842-63338861 Msa0132350:intron 10.0%
!! AAACAAAATTGTAATAAAGA+GGG + chr1_3:63334907-63334926 None:intergenic 15.0%
!!! CATTTTCTTATCATTTATTT+AGG - chr1_3:63335078-63335097 Msa0132350:intron 15.0%
!! TTGTTAAAAATATTATCACT+CGG - chr1_3:63335162-63335181 Msa0132350:intron 15.0%
!!! TCAGTTTTATAAAGAAAAAA+AGG + chr1_3:63335439-63335458 None:intergenic 15.0%
!!! AAAAAATGCTCAAAATATTT+TGG + chr1_3:63336115-63336134 None:intergenic 15.0%
!! AAAGAAAAATAACCATATTA+AGG + chr1_3:63337997-63338016 None:intergenic 15.0%
!! AATCCTAATATTAAATGAAA+TGG - chr1_3:63338351-63338370 Msa0132350:intron 15.0%
!!! TCTTTTTCATTGATTATTAT+TGG - chr1_3:63339056-63339075 Msa0132350:intron 15.0%
!! GAAACAAAATTGTAATAAAG+AGG + chr1_3:63334908-63334927 None:intergenic 20.0%
!!! AAAATGATTTTTTTATGCGA+AGG - chr1_3:63335039-63335058 Msa0132350:intron 20.0%
!! ATTACTGTTATGAGTTATTT+AGG - chr1_3:63335241-63335260 Msa0132350:intron 20.0%
!!! TTATGAGTTATTTAGGTTAT+AGG - chr1_3:63335248-63335267 Msa0132350:intron 20.0%
!! AATATTGAAAATTATTGGAC+CGG + chr1_3:63335361-63335380 None:intergenic 20.0%
!! AATTCAATATGGAAAAGTTT+CGG + chr1_3:63335945-63335964 None:intergenic 20.0%
!! TTTATAATCAGAAAAAGAGA+GGG + chr1_3:63336042-63336061 None:intergenic 20.0%
!!! TTTTATAATCAGAAAAAGAG+AGG + chr1_3:63336043-63336062 None:intergenic 20.0%
!! TTTAGTAGAACTAAAACAAA+GGG + chr1_3:63336403-63336422 None:intergenic 20.0%
!! ATTTAGTAGAACTAAAACAA+AGG + chr1_3:63336404-63336423 None:intergenic 20.0%
!!! AAAAAGTATGCAATGAAAAT+AGG + chr1_3:63337523-63337542 None:intergenic 20.0%
!! AAATTAAGGTAATCATATAC+TGG - chr1_3:63337960-63337979 Msa0132350:intron 20.0%
!! AATTAAGGTAATCATATACT+GGG - chr1_3:63337961-63337980 Msa0132350:intron 20.0%
!! TTTGTTTGTTTATTTCATAC+AGG - chr1_3:63338049-63338068 Msa0132350:intron 20.0%
!!! CATATGACTATAATTTTGAA+TGG - chr1_3:63338565-63338584 Msa0132350:intron 20.0%
!! TTCAGTGTTAATAAATAATG+AGG - chr1_3:63338895-63338914 Msa0132350:intron 20.0%
!!! TTATGTAAGTTTTGATATAG+TGG - chr1_3:63338940-63338959 Msa0132350:intron 20.0%
!! AATAATCAATGAAAAAGAGA+AGG + chr1_3:63339054-63339073 None:intergenic 20.0%
!! TTACTTCATTTCATATTTCT+TGG - chr1_3:63339484-63339503 Msa0132350:intron 20.0%
! TGATCGAAGAAATTTGAATA+GGG + chr1_3:63334750-63334769 None:intergenic 25.0%
! ATGATCGAAGAAATTTGAAT+AGG + chr1_3:63334751-63334770 None:intergenic 25.0%
! TGATTGATATGAATGTATTG+AGG + chr1_3:63335020-63335039 None:intergenic 25.0%
! TAACTGGTTATGTTAATTAC+TGG - chr1_3:63335194-63335213 Msa0132350:intron 25.0%
!! GAACTTTTCTGTATTCAATT+AGG - chr1_3:63335294-63335313 Msa0132350:CDS 25.0%
! CAGCGAATATTGAAAATTAT+TGG + chr1_3:63335366-63335385 None:intergenic 25.0%
!! ATAATTTTCAATATTCGCTG+AGG - chr1_3:63335366-63335385 Msa0132350:intron 25.0%
!! GAAGACAAATCAATTTTTGT+TGG - chr1_3:63335457-63335476 Msa0132350:intron 25.0%
!! ACAAATCAATTTTTGTTGGT+GGG - chr1_3:63335461-63335480 Msa0132350:intron 25.0%
! AACATCGATCAATCAATTAA+CGG - chr1_3:63335609-63335628 Msa0132350:intron 25.0%
! TTGAAGAATATATCCATTGA+AGG + chr1_3:63335812-63335831 None:intergenic 25.0%
! ATATTCTTCAATGTAACTTC+CGG - chr1_3:63335821-63335840 Msa0132350:CDS 25.0%
! AAAAAAATTGATATATCCGC+CGG + chr1_3:63335918-63335937 None:intergenic 25.0%
! ATTCAATATGGAAAAGTTTC+GGG + chr1_3:63335944-63335963 None:intergenic 25.0%
! AGCTAGTGAACAAATAATAA+AGG + chr1_3:63336066-63336085 None:intergenic 25.0%
! AGGATATAATACAATTCGAT+TGG + chr1_3:63336874-63336893 None:intergenic 25.0%
! TCCTATTTAAATCCAAACAA+TGG - chr1_3:63336890-63336909 Msa0132350:intron 25.0%
! TCCATTGTTTGGATTTAAAT+AGG + chr1_3:63336894-63336913 None:intergenic 25.0%
!!! TTGCATATTTTTTTTTCGAG+TGG - chr1_3:63337399-63337418 Msa0132350:intron 25.0%
!! ATCTGAAGTAAAGTTTAAGT+AGG + chr1_3:63337557-63337576 None:intergenic 25.0%
! GAAAACGAGAATATTTCTTT+AGG + chr1_3:63337808-63337827 None:intergenic 25.0%
!! ACCAAGTTATTTAAAACTGA+AGG - chr1_3:63337908-63337927 Msa0132350:intron 25.0%
! ATTAAGGTAATCATATACTG+GGG - chr1_3:63337962-63337981 Msa0132350:intron 25.0%
! CAAATAAATAAATGAGCGTA+TGG + chr1_3:63338033-63338052 None:intergenic 25.0%
! AATGGTTTATAAATCTTGCA+AGG + chr1_3:63338308-63338327 None:intergenic 25.0%
!!! ATTAGGATTTTTGTTTGAAG+AGG + chr1_3:63338340-63338359 None:intergenic 25.0%
! GGTCCATTTCATTTAATATT+AGG + chr1_3:63338357-63338376 None:intergenic 25.0%
!! GACTATAATTTTGAATGGTT+TGG - chr1_3:63338570-63338589 Msa0132350:intron 25.0%
!!! TATAATTTTGAATGGTTTGG+AGG - chr1_3:63338573-63338592 Msa0132350:intron 25.0%
!!! TCAAGCGTTTTAACATTTAT+AGG + chr1_3:63338699-63338718 None:intergenic 25.0%
! AAAAAACTAAGCACAAAAGT+GGG + chr1_3:63339330-63339349 None:intergenic 25.0%
! AAATACTTTGAATTGCTTTC+AGG + chr1_3:63339374-63339393 None:intergenic 25.0%
!!! TTATATGGTTTTGGATAAAG+AGG + chr1_3:63339414-63339433 None:intergenic 25.0%
! TTGATATTGCAGAAGTTATA+TGG + chr1_3:63339429-63339448 None:intergenic 25.0%
!!! ATATCCTGGTTTTAAAGTTT+TGG - chr1_3:63339508-63339527 Msa0132350:intron 25.0%
!!! TAAACCAAAACTTTAAAACC+AGG + chr1_3:63339515-63339534 None:intergenic 25.0%
!! TGGTTGAATATTTAAAACAG+TGG + chr1_3:63339672-63339691 None:intergenic 25.0%
! TGAATAGGGAATTTGATTTC+TGG + chr1_3:63334736-63334755 None:intergenic 30.0%
AATAACCTGAGAACAAAAGT+TGG + chr1_3:63334861-63334880 None:intergenic 30.0%
TCTCAGGTTATTCATTGATA+TGG - chr1_3:63334869-63334888 Msa0132350:CDS 30.0%
TCACATAAAGTCGAATATGA+AGG + chr1_3:63334930-63334949 None:intergenic 30.0%
TGCTATCTTCTACTTATGAT+TGG - chr1_3:63335116-63335135 Msa0132350:intron 30.0%
GTATTCAATTAGGCTTACTT+TGG - chr1_3:63335304-63335323 Msa0132350:intron 30.0%
!! TTGGATTAGTTTCTCTCTTA+TGG - chr1_3:63335323-63335342 Msa0132350:intron 30.0%
! ATTAGTTTCTCTCTTATGGT+AGG - chr1_3:63335327-63335346 Msa0132350:intron 30.0%
! GACAAATCAATTTTTGTTGG+TGG - chr1_3:63335460-63335479 Msa0132350:intron 30.0%
AATTGATTGATCGATGTTAC+CGG + chr1_3:63335607-63335626 None:intergenic 30.0%
TATATCCATTGAAGGAAGAT+TGG + chr1_3:63335804-63335823 None:intergenic 30.0%
!!! TATTTTGACCTATGTCATAC+TGG - chr1_3:63335866-63335885 Msa0132350:CDS 30.0%
!! ATTTTGACCTATGTCATACT+GGG - chr1_3:63335867-63335886 Msa0132350:CDS 30.0%
AATGAAAATATCCACTAGCT+GGG + chr1_3:63335973-63335992 None:intergenic 30.0%
AAATGAAAATATCCACTAGC+TGG + chr1_3:63335974-63335993 None:intergenic 30.0%
! AGTGCTTGTATTTGTTAGAT+AGG - chr1_3:63336166-63336185 Msa0132350:CDS 30.0%
ACATTAAAGATGAAAGAGAG+AGG + chr1_3:63336239-63336258 None:intergenic 30.0%
AGTAAAAACCATCATTCTCA+TGG - chr1_3:63336333-63336352 Msa0132350:CDS 30.0%
GTAAAAACCATCATTCTCAT+GGG - chr1_3:63336334-63336353 Msa0132350:CDS 30.0%
! TCTAGAGAGTTTACTCTTTT+AGG + chr1_3:63336508-63336527 None:intergenic 30.0%
! TAGTGCGATATTTGATTTCA+GGG + chr1_3:63336603-63336622 None:intergenic 30.0%
ATATTGCTATATGTGAATGC+AGG - chr1_3:63337114-63337133 Msa0132350:intron 30.0%
! AACTCACCTGATTTTTACAA+AGG + chr1_3:63337235-63337254 None:intergenic 30.0%
CTTGTAGAACAAAATAACCA+GGG + chr1_3:63337455-63337474 None:intergenic 30.0%
ACTTGTAGAACAAAATAACC+AGG + chr1_3:63337456-63337475 None:intergenic 30.0%
TTCTAGTCAGTTAACTTAAC+TGG - chr1_3:63337642-63337661 Msa0132350:intron 30.0%
! AACTTTTCTTCTAAGTAGTG+CGG - chr1_3:63337738-63337757 Msa0132350:intron 30.0%
GCTATAGATATCATTGCAAT+CGG - chr1_3:63337760-63337779 Msa0132350:intron 30.0%
!!! GCCTTCAGTTTTAAATAACT+TGG + chr1_3:63337912-63337931 None:intergenic 30.0%
TTTGTTTATTTCATACAGGC+AGG - chr1_3:63338053-63338072 Msa0132350:intron 30.0%
ACCTTGAGTTTCATAAGTAT+GGG + chr1_3:63338138-63338157 None:intergenic 30.0%
!! AAACTTTTGTTTGCTTTTGC+AGG - chr1_3:63338216-63338235 Msa0132350:intron 30.0%
CAAGATTTATAAACCATTCC+TGG - chr1_3:63338310-63338329 Msa0132350:intron 30.0%
AAATAGGAGGATAACAAAAC+AGG + chr1_3:63338403-63338422 None:intergenic 30.0%
ACAAGAAAATGGAATGTCAT+GGG - chr1_3:63338486-63338505 Msa0132350:intron 30.0%
! AGTTAAGCCTTTTAAATGCA+TGG - chr1_3:63338745-63338764 Msa0132350:intron 30.0%
! GTTAAGCCTTTTAAATGCAT+GGG - chr1_3:63338746-63338765 Msa0132350:intron 30.0%
GTGTTAATAAATAATGAGGC+TGG - chr1_3:63338899-63338918 Msa0132350:intron 30.0%
AAAAACTAAGCACAAAAGTG+GGG + chr1_3:63339329-63339348 None:intergenic 30.0%
CAAAAAACTAAGCACAAAAG+TGG + chr1_3:63339331-63339350 None:intergenic 30.0%
! TTGCAGAAGTTATATGGTTT+TGG + chr1_3:63339423-63339442 None:intergenic 30.0%
AATTCCTTTATATGACTCTG+CGG - chr1_3:63339565-63339584 Msa0132350:five_prime_UTR 30.0%
ATTCAACCACTGAATTCAAT+TGG - chr1_3:63339683-63339702 Msa0132350:five_prime_UTR 30.0%
TTCAACCACTGAATTCAATT+GGG - chr1_3:63339684-63339703 Msa0132350:five_prime_UTR 30.0%
CAATAAGAGGAATGGGAAAA+TGG + chr1_3:63334838-63334857 None:intergenic 35.0%
AAGTTGGCAATAAGAGGAAT+GGG + chr1_3:63334845-63334864 None:intergenic 35.0%
AAAGTTGGCAATAAGAGGAA+TGG + chr1_3:63334846-63334865 None:intergenic 35.0%
GAACAAAAGTTGGCAATAAG+AGG + chr1_3:63334851-63334870 None:intergenic 35.0%
! TATTGCCAACTTTTGTTCTC+AGG - chr1_3:63334853-63334872 Msa0132350:CDS 35.0%
!!! GACTTTTTTATCTGCGTATG+AGG - chr1_3:63335413-63335432 Msa0132350:intron 35.0%
ATTGAGAAGAGAACCTACAA+GGG + chr1_3:63335526-63335545 None:intergenic 35.0%
AATTGAGAAGAGAACCTACA+AGG + chr1_3:63335527-63335546 None:intergenic 35.0%
ATTGATTGATCGATGTTACC+GGG + chr1_3:63335606-63335625 None:intergenic 35.0%
ATCGATCAATCAATTAACGG+CGG - chr1_3:63335612-63335631 Msa0132350:intron 35.0%
TTGAAGGAAGATTGGACAAT+GGG + chr1_3:63335796-63335815 None:intergenic 35.0%
ATTGAAGGAAGATTGGACAA+TGG + chr1_3:63335797-63335816 None:intergenic 35.0%
ATTGTCCAATCTTCCTTCAA+TGG - chr1_3:63335796-63335815 Msa0132350:CDS 35.0%
GCTGGGAGATTAATTCAATA+TGG + chr1_3:63335956-63335975 None:intergenic 35.0%
AAAGAGAGGGATAAGAGAAT+TGG + chr1_3:63336029-63336048 None:intergenic 35.0%
!!! AAAATATTTTGGTTGCGAGG+CGG + chr1_3:63336104-63336123 None:intergenic 35.0%
!!! CTCAAAATATTTTGGTTGCG+AGG + chr1_3:63336107-63336126 None:intergenic 35.0%
TGTACTCTTACAAAAGCAGA+GGG + chr1_3:63336216-63336235 None:intergenic 35.0%
! CTTTTAGGCGAATAGCAATA+AGG + chr1_3:63336493-63336512 None:intergenic 35.0%
TAGAAATTTCATCCGACTTC+TGG - chr1_3:63336524-63336543 Msa0132350:CDS 35.0%
GACTAAAAAACTATCCCACA+AGG + chr1_3:63336550-63336569 None:intergenic 35.0%
!!! TGGGATAGTTTTTTAGTCAG+TGG - chr1_3:63336552-63336571 Msa0132350:intron 35.0%
!!! GGGATAGTTTTTTAGTCAGT+GGG - chr1_3:63336553-63336572 Msa0132350:intron 35.0%
!! TTTTTAGTCAGTGGGATAGA+AGG - chr1_3:63336561-63336580 Msa0132350:intron 35.0%
! GATATTTGATTTCAGGGCAT+CGG + chr1_3:63336597-63336616 None:intergenic 35.0%
! CTAGTGCGATATTTGATTTC+AGG + chr1_3:63336604-63336623 None:intergenic 35.0%
TTATGAGTTCGTCAACAGAA+TGG + chr1_3:63336644-63336663 None:intergenic 35.0%
TTCTGTATTATGAAGCAGGA+AGG + chr1_3:63336696-63336715 None:intergenic 35.0%
CATAATACAGAAGAGGAAGT+TGG - chr1_3:63336704-63336723 Msa0132350:intron 35.0%
TGAGGGATCTAAATTCCAAT+GGG + chr1_3:63336924-63336943 None:intergenic 35.0%
! TTTTACAAAGGATGCCACAA+GGG + chr1_3:63337223-63337242 None:intergenic 35.0%
! TTTTTACAAAGGATGCCACA+AGG + chr1_3:63337224-63337243 None:intergenic 35.0%
TGGCATCCTTTGTAAAAATC+AGG - chr1_3:63337226-63337245 Msa0132350:CDS 35.0%
TATTTGTATTCTGCTTTCCC+TGG - chr1_3:63337435-63337454 Msa0132350:intron 35.0%
GTTAACTTAACTGGCATAAC+TGG - chr1_3:63337651-63337670 Msa0132350:intron 35.0%
TAGCAGTCTGTAGTTACAAT+TGG - chr1_3:63337704-63337723 Msa0132350:intron 35.0%
! TTATTTAAAACTGAAGGCCG+AGG - chr1_3:63337914-63337933 Msa0132350:intron 35.0%
! TATTTAAAACTGAAGGCCGA+GGG - chr1_3:63337915-63337934 Msa0132350:intron 35.0%
TTTGGCTGATGAGGAAATTA+AGG - chr1_3:63337946-63337965 Msa0132350:intron 35.0%
ATCATATACTGGGGAAATTC+AGG - chr1_3:63337971-63337990 Msa0132350:intron 35.0%
CAGTTTGTCATTGAATACTG+TGG - chr1_3:63338077-63338096 Msa0132350:intron 35.0%
TCCCATACTTATGAAACTCA+AGG - chr1_3:63338134-63338153 Msa0132350:intron 35.0%
GACCTTGAGTTTCATAAGTA+TGG + chr1_3:63338139-63338158 None:intergenic 35.0%
TCTATCGATGCAACTAGAAA+AGG - chr1_3:63338279-63338298 Msa0132350:intron 35.0%
TTTGTTTGAAGAGGTTTACC+AGG + chr1_3:63338331-63338350 None:intergenic 35.0%
TACAATACTTGCATATTGGC+AGG + chr1_3:63338378-63338397 None:intergenic 35.0%
GGTCTACAATACTTGCATAT+TGG + chr1_3:63338382-63338401 None:intergenic 35.0%
! TTCAGTTGATGTCAAACCTT+GGG + chr1_3:63338433-63338452 None:intergenic 35.0%
! ATTCAGTTGATGTCAAACCT+TGG + chr1_3:63338434-63338453 None:intergenic 35.0%
! CATTTTCTTGTCTCACAGTT+TGG + chr1_3:63338477-63338496 None:intergenic 35.0%
CAAACTGTGAGACAAGAAAA+TGG - chr1_3:63338475-63338494 Msa0132350:intron 35.0%
GACAAGAAAATGGAATGTCA+TGG - chr1_3:63338485-63338504 Msa0132350:intron 35.0%
CAAGAAAATGGAATGTCATG+GGG - chr1_3:63338487-63338506 Msa0132350:intron 35.0%
AAGAAAATGGAATGTCATGG+GGG - chr1_3:63338488-63338507 Msa0132350:intron 35.0%
AAGAGTTGGAATATTTGCAC+TGG - chr1_3:63338515-63338534 Msa0132350:intron 35.0%
TATTCCTATTGGAACTGAAC+TGG - chr1_3:63338542-63338561 Msa0132350:intron 35.0%
! CTCAAATGTTCTGAATTCCT+TGG - chr1_3:63338624-63338643 Msa0132350:intron 35.0%
ATCATGCCCATGCATTTAAA+AGG + chr1_3:63338755-63338774 None:intergenic 35.0%
ATCACCTTTCAAGCTATTAG+CGG + chr1_3:63338810-63338829 None:intergenic 35.0%
! TTCCTCGTGTTTGGAATAAT+CGG - chr1_3:63339099-63339118 Msa0132350:intron 35.0%
AGCAGGAAGATACTTATCTA+TGG - chr1_3:63339122-63339141 Msa0132350:intron 35.0%
GCAGGAAGATACTTATCTAT+GGG - chr1_3:63339123-63339142 Msa0132350:intron 35.0%
! TCGTTTTATCTGTTACTGAC+TGG - chr1_3:63339215-63339234 Msa0132350:intron 35.0%
TGCTAGGATCTCATCATTAT+GGG + chr1_3:63339279-63339298 None:intergenic 35.0%
ATAATGATGAGATCCTAGCA+CGG - chr1_3:63339279-63339298 Msa0132350:intron 35.0%
AAAACTAAGCACAAAAGTGG+GGG + chr1_3:63339328-63339347 None:intergenic 35.0%
!!! ATGGTTTTGGATAAAGAGGA+AGG + chr1_3:63339410-63339429 None:intergenic 35.0%
TCATATTTCTTGGCATATCC+TGG - chr1_3:63339494-63339513 Msa0132350:intron 35.0%
AGCTTTCAGTATAATAGCCA+TGG + chr1_3:63339633-63339652 None:intergenic 35.0%
TTGATCCCAATTGAATTCAG+TGG + chr1_3:63339692-63339711 None:intergenic 35.0%
CTGAATTCAATTGGGATCAA+TGG - chr1_3:63339692-63339711 Msa0132350:five_prime_UTR 35.0%
CACTCGATTGACATAAAGGA+AGG + chr1_3:63335640-63335659 None:intergenic 40.0%
TCGATTGAGACAGAGAGTAA+AGG - chr1_3:63335683-63335702 Msa0132350:intron 40.0%
GGGATCTTTACCTAATGATG+CGG + chr1_3:63335775-63335794 None:intergenic 40.0%
TGAAGGAAGATTGGACAATG+GGG + chr1_3:63335795-63335814 None:intergenic 40.0%
ATTAGCTACGCGATTCTTAC+CGG + chr1_3:63335843-63335862 None:intergenic 40.0%
GCTGGTAGAGTTTGTATATG+TGG + chr1_3:63335896-63335915 None:intergenic 40.0%
CATATACAAACTCTACCAGC+CGG - chr1_3:63335896-63335915 Msa0132350:CDS 40.0%
TGAATTAATCTCCCAGCTAG+TGG - chr1_3:63335959-63335978 Msa0132350:intron 40.0%
AGCACTGCGCAAGATTAATT+TGG + chr1_3:63336152-63336171 None:intergenic 40.0%
GTGTACTCTTACAAAAGCAG+AGG + chr1_3:63336217-63336236 None:intergenic 40.0%
ACTTTGTAAAGCTGTCCTGA+CGG + chr1_3:63336316-63336335 None:intergenic 40.0%
ACTAAAGATCCAGCATAAGC+GGG + chr1_3:63336373-63336392 None:intergenic 40.0%
CACTAAAGATCCAGCATAAG+CGG + chr1_3:63336374-63336393 None:intergenic 40.0%
GAATGGAATTGGAAGTGAAG+TGG + chr1_3:63336627-63336646 None:intergenic 40.0%
GTTCGTCAACAGAATGGAAT+TGG + chr1_3:63336638-63336657 None:intergenic 40.0%
! ACTAGATAACTTGTGACAGC+GGG + chr1_3:63336672-63336691 None:intergenic 40.0%
! CACTAGATAACTTGTGACAG+CGG + chr1_3:63336673-63336692 None:intergenic 40.0%
CCTCTTCTGTATTATGAAGC+AGG + chr1_3:63336700-63336719 None:intergenic 40.0%
CCTGCTTCATAATACAGAAG+AGG - chr1_3:63336697-63336716 Msa0132350:intron 40.0%
! CAAATCAAAGGGTACAAGGT+TGG + chr1_3:63336810-63336829 None:intergenic 40.0%
CAACCTTGTACCCTTTGATT+TGG - chr1_3:63336808-63336827 Msa0132350:intron 40.0%
!! CTTGTACCCTTTGATTTGGA+GGG - chr1_3:63336812-63336831 Msa0132350:intron 40.0%
TTCCTACCCTCCAAATCAAA+GGG + chr1_3:63336821-63336840 None:intergenic 40.0%
TTTCCTACCCTCCAAATCAA+AGG + chr1_3:63336822-63336841 None:intergenic 40.0%
!! TTTGATTTGGAGGGTAGGAA+AGG - chr1_3:63336821-63336840 Msa0132350:intron 40.0%
GTGAGGGATCTAAATTCCAA+TGG + chr1_3:63336925-63336944 None:intergenic 40.0%
CTTTGAATTGGTGGAATTGG+TGG + chr1_3:63336947-63336966 None:intergenic 40.0%
CACCAATTCCACCAATTCAA+AGG - chr1_3:63336945-63336964 Msa0132350:intron 40.0%
AGCCTTTGAATTGGTGGAAT+TGG + chr1_3:63336950-63336969 None:intergenic 40.0%
TTCCACCAATTCAAAGGCTA+TGG - chr1_3:63336951-63336970 Msa0132350:intron 40.0%
ATAGGCCATAGCCTTTGAAT+TGG + chr1_3:63336959-63336978 None:intergenic 40.0%
AATTCAAAGGCTATGGCCTA+TGG - chr1_3:63336958-63336977 Msa0132350:intron 40.0%
! CATTCGATTTTCCATTCCTC+TGG + chr1_3:63336997-63337016 None:intergenic 40.0%
ACTTCTCTTTATCTCTGTGC+AGG - chr1_3:63337069-63337088 Msa0132350:intron 40.0%
AAATCAGGTGAGTTCGTGTT+TGG - chr1_3:63337241-63337260 Msa0132350:CDS 40.0%
AATCAGGTGAGTTCGTGTTT+GGG - chr1_3:63337242-63337261 Msa0132350:CDS 40.0%
!! CTTTTTAACTACCAGCAGGA+TGG + chr1_3:63337307-63337326 None:intergenic 40.0%
!! CCAACTTTTTAACTACCAGC+AGG + chr1_3:63337311-63337330 None:intergenic 40.0%
CCTGCTGGTAGTTAAAAAGT+TGG - chr1_3:63337308-63337327 Msa0132350:CDS 40.0%
ATTTCTGCAAGCATGAGACA+TGG + chr1_3:63337865-63337884 None:intergenic 40.0%
GGGAAATTCAGGCCTTAATA+TGG - chr1_3:63337982-63338001 Msa0132350:intron 40.0%
!! GTTTGCTTTTGCAGGTCTTA+AGG - chr1_3:63338224-63338243 Msa0132350:intron 40.0%
TTGAAGAGGTTTACCAGGAA+TGG + chr1_3:63338326-63338345 None:intergenic 40.0%
GCACTGGAAGATATTCCTAT+TGG - chr1_3:63338531-63338550 Msa0132350:intron 40.0%
TATGCCAGTTCAGTTCCAAT+AGG + chr1_3:63338549-63338568 None:intergenic 40.0%
! TAGCGGGTCTTAAAAACTCA+TGG + chr1_3:63338793-63338812 None:intergenic 40.0%
TCACCTTTCAAGCTATTAGC+GGG + chr1_3:63338809-63338828 None:intergenic 40.0%
GCTAATAGCTTGAAAGGTGA+TGG - chr1_3:63338809-63338828 Msa0132350:intron 40.0%
! TATGGGAAGATGATGATGAC+AGG - chr1_3:63339140-63339159 Msa0132350:intron 40.0%
ATCTCATCATTATGGGGTCT+TGG + chr1_3:63339272-63339291 None:intergenic 40.0%
GCTAGGATCTCATCATTATG+GGG + chr1_3:63339278-63339297 None:intergenic 40.0%
GTGCTAGGATCTCATCATTA+TGG + chr1_3:63339280-63339299 None:intergenic 40.0%
GATGAACTCACGTCAAATGT+TGG - chr1_3:63339590-63339609 Msa0132350:five_prime_UTR 40.0%
ACTGAAAGCTGAAGAACCAT+CGG - chr1_3:63339643-63339662 Msa0132350:five_prime_UTR 40.0%
! TTTAAAACAGTGGACTCCGA+TGG + chr1_3:63339662-63339681 None:intergenic 40.0%
TCAATTGGGATCAATGGCTT+AGG - chr1_3:63339698-63339717 Msa0132350:five_prime_UTR 40.0%
AGAAGCGAGAAAAGGGGTTT+GGG + chr1_3:63334802-63334821 None:intergenic 45.0%
AGCTTGCAGAAGCGAGAAAA+GGG + chr1_3:63334809-63334828 None:intergenic 45.0%
AAGCTTGCAGAAGCGAGAAA+AGG + chr1_3:63334810-63334829 None:intergenic 45.0%
CACTCGGTAGCATTACTAAC+TGG - chr1_3:63335178-63335197 Msa0132350:intron 45.0%
TCTCTCTTATGGTAGGTTCC+AGG - chr1_3:63335334-63335353 Msa0132350:intron 45.0%
GAAAATTATTGGACCGGACC+TGG + chr1_3:63335355-63335374 None:intergenic 45.0%
ACCACTGAATCCCTTGCTTT+CGG + chr1_3:63335487-63335506 None:intergenic 45.0%
! GATTCAGTGGTCTTACCCTT+GGG - chr1_3:63335496-63335515 Msa0132350:intron 45.0%
CAGGCACTCGATTGACATAA+AGG + chr1_3:63335644-63335663 None:intergenic 45.0%
TAAACAGCTGAGTCCGAGAT+TGG - chr1_3:63335717-63335736 Msa0132350:intron 45.0%
AAACAGCTGAGTCCGAGATT+GGG - chr1_3:63335718-63335737 Msa0132350:intron 45.0%
! GCTAGTTCTTCTCCCAATCT+CGG + chr1_3:63335733-63335752 None:intergenic 45.0%
CTAATGATGCGGAGCGAATT+CGG + chr1_3:63335764-63335783 None:intergenic 45.0%
AAATTGATATATCCGCCGGC+TGG + chr1_3:63335914-63335933 None:intergenic 45.0%
TGCATAGCCCATGAGAATGA+TGG + chr1_3:63336344-63336363 None:intergenic 45.0%
TAAAGATCCAGCATAAGCGG+GGG + chr1_3:63336371-63336390 None:intergenic 45.0%
CTAAAGATCCAGCATAAGCG+GGG + chr1_3:63336372-63336391 None:intergenic 45.0%
TTAGTCAGTGGGATAGAAGG+TGG - chr1_3:63336564-63336583 Msa0132350:intron 45.0%
! CCTCCAAATCAAAGGGTACA+AGG + chr1_3:63336814-63336833 None:intergenic 45.0%
!! CCTTGTACCCTTTGATTTGG+AGG - chr1_3:63336811-63336830 Msa0132350:intron 45.0%
!! TACCCTTTGATTTGGAGGGT+AGG - chr1_3:63336816-63336835 Msa0132350:intron 45.0%
AGGTGGAGTGTGGAGTATAA+TGG - chr1_3:63336841-63336860 Msa0132350:intron 45.0%
!! TGGGCTGGTATTCCATTGTT+TGG + chr1_3:63336905-63336924 None:intergenic 45.0%
ACAATGGAATACCAGCCCAT+TGG - chr1_3:63336906-63336925 Msa0132350:intron 45.0%
GGATCTAAATTCCAATGGGC+TGG + chr1_3:63336920-63336939 None:intergenic 45.0%
!! ATTGGTGGAATTGGTGGTGA+GGG + chr1_3:63336941-63336960 None:intergenic 45.0%
!! AATTGGTGGAATTGGTGGTG+AGG + chr1_3:63336942-63336961 None:intergenic 45.0%
ATTTAGACACCCATCTCCAC+AGG + chr1_3:63337165-63337184 None:intergenic 45.0%
GCTTTAACCTGTGTCTCTGA+AGG - chr1_3:63337360-63337379 Msa0132350:intron 45.0%
ATAAGTATGGGATCTGCGCT+TGG + chr1_3:63338126-63338145 None:intergenic 45.0%
! AGTTGATGTCAAACCTTGGG+CGG + chr1_3:63338430-63338449 None:intergenic 45.0%
GTCATGGGGGAAATAAGAGT+TGG - chr1_3:63338501-63338520 Msa0132350:intron 45.0%
! TGAATGGTTTGGAGGTGCAA+AGG - chr1_3:63338581-63338600 Msa0132350:intron 45.0%
TTCCTTGGAGCAAAATCTCG+TGG - chr1_3:63338639-63338658 Msa0132350:intron 45.0%
! AACCACGAGATTTTGCTCCA+AGG + chr1_3:63338644-63338663 None:intergenic 45.0%
AGACCCGCTAATAGCTTGAA+AGG - chr1_3:63338803-63338822 Msa0132350:intron 45.0%
! TAGCTTGAAAGGTGATGGCT+AGG - chr1_3:63338814-63338833 Msa0132350:intron 45.0%
CTACTCTTCTTCCTCGTGTT+TGG - chr1_3:63339090-63339109 Msa0132350:intron 45.0%
CTCCGATTATTCCAAACACG+AGG + chr1_3:63339104-63339123 None:intergenic 45.0%
! GTGTTTGGAATAATCGGAGC+AGG - chr1_3:63339105-63339124 Msa0132350:intron 45.0%
TCATTATGGGGTCTTGGAGT+GGG + chr1_3:63339266-63339285 None:intergenic 45.0%
ATCATTATGGGGTCTTGGAG+TGG + chr1_3:63339267-63339286 None:intergenic 45.0%
TCCTTTATATGACTCTGCGG+AGG - chr1_3:63339568-63339587 Msa0132350:five_prime_UTR 45.0%
TCCTCCGCAGAGTCATATAA+AGG + chr1_3:63339572-63339591 None:intergenic 45.0%
GAACTCACGTCAAATGTTGG+TGG - chr1_3:63339593-63339612 Msa0132350:five_prime_UTR 45.0%
TGGACAGAGTGAACAATCCA+TGG - chr1_3:63339613-63339632 Msa0132350:five_prime_UTR 45.0%
!!! TATTATTATTATTATTTTGA+AGG - chr1_3:63334971-63334990 Msa0132350:intron 5.0%
AAGCGAGAAAAGGGGTTTGG+GGG + chr1_3:63334800-63334819 None:intergenic 50.0%
GAAGCGAGAAAAGGGGTTTG+GGG + chr1_3:63334801-63334820 None:intergenic 50.0%
CAGAAGCGAGAAAAGGGGTT+TGG + chr1_3:63334803-63334822 None:intergenic 50.0%
GCTTGCAGAAGCGAGAAAAG+GGG + chr1_3:63334808-63334827 None:intergenic 50.0%
GGCAAATCTTCAGCAGCATG+AGG + chr1_3:63334999-63335018 None:intergenic 50.0%
CTTATGGTAGGTTCCAGGTC+CGG - chr1_3:63335339-63335358 Msa0132350:intron 50.0%
! GGATTCAGTGGTCTTACCCT+TGG - chr1_3:63335495-63335514 Msa0132350:intron 50.0%
AGAAGAGAACCTACAAGGGC+CGG + chr1_3:63335522-63335541 None:intergenic 50.0%
GCCTGACTTCTCTATCTGAC+CGG - chr1_3:63335659-63335678 Msa0132350:intron 50.0%
ACTCTCTGTCTCAATCGAGC+CGG + chr1_3:63335681-63335700 None:intergenic 50.0%
! CAGAGAGTAAAGGCGCGAAT+CGG - chr1_3:63335693-63335712 Msa0132350:intron 50.0%
CGAATTCGCTCCGCATCATT+AGG - chr1_3:63335762-63335781 Msa0132350:intron 50.0%
ATACAAACTCTACCAGCCGG+CGG - chr1_3:63335899-63335918 Msa0132350:CDS 50.0%
!!! ATTTTGGTTGCGAGGCGGAA+GGG + chr1_3:63336099-63336118 None:intergenic 50.0%
!!! TATTTTGGTTGCGAGGCGGA+AGG + chr1_3:63336100-63336119 None:intergenic 50.0%
ATACTCTTGCGAAGACCGTC+AGG - chr1_3:63336298-63336317 Msa0132350:CDS 50.0%
AAAGATCCAGCATAAGCGGG+GGG + chr1_3:63336370-63336389 None:intergenic 50.0%
TATCCCACAAGGCCAGAAGT+CGG + chr1_3:63336539-63336558 None:intergenic 50.0%
GATTTGGAGGGTAGGAAAGG+TGG - chr1_3:63336824-63336843 Msa0132350:intron 50.0%
GGCCATAGCCTTTGAATTGG+TGG + chr1_3:63336956-63336975 None:intergenic 50.0%
AGGCTATGGCCTATGGTACA+AGG - chr1_3:63336965-63336984 Msa0132350:intron 50.0%
! GATTTTCCATTCCTCTGGCC+TGG + chr1_3:63336992-63337011 None:intergenic 50.0%
GTGCAGGCATAAGAAGCAGA+AGG - chr1_3:63337085-63337104 Msa0132350:intron 50.0%
CAGGCATAAGAAGCAGAAGG+AGG - chr1_3:63337088-63337107 Msa0132350:intron 50.0%
GCATAAGAAGCAGAAGGAGG+AGG - chr1_3:63337091-63337110 Msa0132350:intron 50.0%
TGCCACAAGGGCAAAATCCA+GGG + chr1_3:63337211-63337230 None:intergenic 50.0%
ATGCCACAAGGGCAAAATCC+AGG + chr1_3:63337212-63337231 None:intergenic 50.0%
TCGCACTATAACCATCCTGC+TGG - chr1_3:63337293-63337312 Msa0132350:CDS 50.0%
ACAAGTGCCTTCAGAGACAC+AGG + chr1_3:63337370-63337389 None:intergenic 50.0%
TTAAAACTGAAGGCCGAGGG+TGG - chr1_3:63337918-63337937 Msa0132350:intron 50.0%
TAAAACTGAAGGCCGAGGGT+GGG - chr1_3:63337919-63337938 Msa0132350:intron 50.0%
AACATTTGAGCGCACCACAG+AGG + chr1_3:63338614-63338633 None:intergenic 50.0%
CATTATGGGGTCTTGGAGTG+GGG + chr1_3:63339265-63339284 None:intergenic 50.0%
CAAGCACAAGTTTCCGTGCT+AGG + chr1_3:63339295-63339314 None:intergenic 50.0%
AGCGAGAAAAGGGGTTTGGG+GGG + chr1_3:63334799-63334818 None:intergenic 55.0%
! TTGTTGGTGGGCCGAAAGCA+AGG - chr1_3:63335473-63335492 Msa0132350:intron 55.0%
! TGTTGGTGGGCCGAAAGCAA+GGG - chr1_3:63335474-63335493 Msa0132350:intron 55.0%
GCCGAAAGCAAGGGATTCAG+TGG - chr1_3:63335483-63335502 Msa0132350:intron 55.0%
! CTGTCTCTGTTGCTGCTTCC+CGG - chr1_3:63335585-63335604 Msa0132350:intron 55.0%
GCCGGTCAGATAGAGAAGTC+AGG + chr1_3:63335663-63335682 None:intergenic 55.0%
GTGGTCGCCCAGTATGACAT+AGG + chr1_3:63335877-63335896 None:intergenic 55.0%
!! TCATCCGACTTCTGGCCTTG+TGG - chr1_3:63336532-63336551 Msa0132350:CDS 55.0%
!! CATCCGACTTCTGGCCTTGT+GGG - chr1_3:63336533-63336552 Msa0132350:CDS 55.0%
AGGGTAGGAAAGGTGGAGTG+TGG - chr1_3:63336831-63336850 Msa0132350:intron 55.0%
TGGCCTATGGTACAAGGACC+AGG - chr1_3:63336971-63336990 Msa0132350:intron 55.0%
TGGCCTGGTCCTTGTACCAT+AGG + chr1_3:63336977-63336996 None:intergenic 55.0%
! ACCCCTGGATTTTGCCCTTG+TGG - chr1_3:63337206-63337225 Msa0132350:CDS 55.0%
GCCACAAGGGCAAAATCCAG+GGG + chr1_3:63337210-63337229 None:intergenic 55.0%
AAAACTGAAGGCCGAGGGTG+GGG - chr1_3:63337920-63337939 Msa0132350:intron 55.0%
!! GTGGGGTCTTTTGGCTGATG+AGG - chr1_3:63337937-63337956 Msa0132350:intron 55.0%
AACCTTGGGCGGTGGGAAAT+AGG + chr1_3:63338419-63338438 None:intergenic 55.0%
GATGTCAAACCTTGGGCGGT+GGG + chr1_3:63338426-63338445 None:intergenic 55.0%
TGATGTCAAACCTTGGGCGG+TGG + chr1_3:63338427-63338446 None:intergenic 55.0%
GCGAGAAAAGGGGTTTGGGG+GGG + chr1_3:63334798-63334817 None:intergenic 60.0%
! CAGTGGTCTTACCCTTGGGC+CGG - chr1_3:63335500-63335519 Msa0132350:intron 60.0%
GCATTTCCCCCCGCTTATGC+TGG - chr1_3:63336361-63336380 Msa0132350:intron 60.0%
TGGTACAAGGACCAGGCCAG+AGG - chr1_3:63336978-63336997 Msa0132350:intron 60.0%
CAAGGACCAGGCCAGAGGAA+TGG - chr1_3:63336983-63337002 Msa0132350:intron 60.0%
GATGATCCCGACAGTGCCTG+TGG - chr1_3:63337146-63337165 Msa0132350:intron 60.0%
! CCATCTCCACAGGCACTGTC+GGG + chr1_3:63337155-63337174 None:intergenic 60.0%
! CCCATCTCCACAGGCACTGT+CGG + chr1_3:63337156-63337175 None:intergenic 60.0%
CCGACAGTGCCTGTGGAGAT+GGG - chr1_3:63337153-63337172 Msa0132350:intron 60.0%
! ACCAGCACTGAATGCACCCC+TGG - chr1_3:63337191-63337210 Msa0132350:intron 60.0%
! TCCAGGGGTGCATTCAGTGC+TGG + chr1_3:63337195-63337214 None:intergenic 60.0%
CAGCCAAAAGACCCCACCCT+CGG + chr1_3:63337934-63337953 None:intergenic 60.0%
CTTGGGCGGTGGGAAATAGG+AGG + chr1_3:63338416-63338435 None:intergenic 60.0%
CTCCTATTTCCCACCGCCCA+AGG - chr1_3:63338414-63338433 Msa0132350:intron 60.0%
GCAAAGGTTCGCTGCCTCTG+TGG - chr1_3:63338597-63338616 Msa0132350:intron 60.0%
ATGGGGTCTTGGAGTGGGGA+AGG + chr1_3:63339261-63339280 None:intergenic 60.0%
ACCTACAAGGGCCGGCCCAA+GGG + chr1_3:63335514-63335533 None:intergenic 65.0%
AACCTACAAGGGCCGGCCCA+AGG + chr1_3:63335515-63335534 None:intergenic 65.0%
CCCGACAGTGCCTGTGGAGA+TGG - chr1_3:63337152-63337171 Msa0132350:intron 65.0%
! AGGCCGAGGGTGGGGTCTTT+TGG - chr1_3:63337928-63337947 Msa0132350:intron 65.0%
ACCCTTGGGCCGGCCCTTGT+AGG - chr1_3:63335510-63335529 Msa0132350:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 63334706 63339739 63334706 ID=Msa0132350;Name=Msa0132350
chr1_3 mRNA 63334706 63339739 63334706 ID=Msa0132350-mRNA-1;Parent=Msa0132350;Name=Msa0132350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=182|1|0.88|1|1|1|9|0|306
chr1_3 exon 63334706 63334895 63334706 ID=Msa0132350-mRNA-1:exon:21221;Parent=Msa0132350-mRNA-1
chr1_3 exon 63335284 63335318 63335284 ID=Msa0132350-mRNA-1:exon:21220;Parent=Msa0132350-mRNA-1
chr1_3 exon 63335777 63335975 63335777 ID=Msa0132350-mRNA-1:exon:21219;Parent=Msa0132350-mRNA-1
chr1_3 exon 63336114 63336207 63336114 ID=Msa0132350-mRNA-1:exon:21218;Parent=Msa0132350-mRNA-1
chr1_3 exon 63336290 63336374 63336290 ID=Msa0132350-mRNA-1:exon:21217;Parent=Msa0132350-mRNA-1
chr1_3 exon 63336478 63336564 63336478 ID=Msa0132350-mRNA-1:exon:21216;Parent=Msa0132350-mRNA-1
chr1_3 exon 63337198 63337354 63337198 ID=Msa0132350-mRNA-1:exon:21215;Parent=Msa0132350-mRNA-1
chr1_3 exon 63339385 63339452 63339385 ID=Msa0132350-mRNA-1:exon:21214;Parent=Msa0132350-mRNA-1
chr1_3 exon 63339555 63339739 63339555 ID=Msa0132350-mRNA-1:exon:21213;Parent=Msa0132350-mRNA-1
chr1_3 five_prime_UTR 63339558 63339739 63339558 ID=Msa0132350-mRNA-1:five_prime_utr;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63339555 63339557 63339555 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63339385 63339452 63339385 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63337198 63337354 63337198 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63336478 63336564 63336478 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63336290 63336374 63336290 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63336114 63336207 63336114 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63335777 63335975 63335777 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63335284 63335318 63335284 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
chr1_3 CDS 63334706 63334895 63334706 ID=Msa0132350-mRNA-1:cds;Parent=Msa0132350-mRNA-1
Gene Sequence

>Msa0132350

ATGGAACCTCATGCTGCTGAAGATTTGCCTCAATACATTCATATCAATCAAAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATGATGAAGATGATCCCGACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTGACCAGCACTGAATGCACCCCTGGATTTTGCCCTTGTGGCATCCTTTGTAAAAATCAGAAATTTCAGAAATGTGAATATGCAAAAACCAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAGCGCAGATCCCATACTTATGAAACTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCTATCGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAACCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGAATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAAGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACGTCAAATGTTGGTGGACAGAGTGAACAATCCATGGCTATTATACTGAAAGCTGAAGAACCATCGGAGTCCACTGTTTTAAATATTCAACCACTGAATTCAATTGGGATCAATGGCTTAGGTATTCAGAAAATGAAAACT
Protein sequence

>Msa0132350

MEPHAAEDLPQYIHINQNDFFMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGFCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYETQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVMGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSEFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVGGQSEQSMAIILKAEEPSESTVLNIQPLNSIGINGLGIQKMKT