AlfalfaGEDB | Msa0132370

M. sativa cultivar zhongmu-4 / Msa0132370

KEGG: K11423
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564
PFAM: PF17907.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132370	XP_024641918.1	97.890	474	9	1	1	473	1	474	0.0	955

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132370	sp\|Q84WW6\|ASHH1_ARATH	64.375	480	155	6	6	470	11	489	0.0	612

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132370	A0A396JTL7	97.890	474	9	1	1	473	1	474	0.0	955

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TFs/TRs:

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Gene ID	Type	Classification
Msa0132370	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132370	MtrunA17_Chr1g0201621	97.890	474	9	1	1	473	1	474	0.0	955
Msa0132370	MtrunA17_Chr1g0201311	96.835	474	14	1	1	473	1	474	0.0	947
Msa0132370	MtrunA17_Chr3g0125251	41.453	234	134	3	12	244	1253	1484	1.72e-55	200
Msa0132370	MtrunA17_Chr6g0477001	43.519	216	118	4	11	226	42	253	1.98e-48	169
Msa0132370	MtrunA17_Chr1g0201321	97.590	83	1	1	271	352	1	83	4.92e-48	160
Msa0132370	MtrunA17_Chr2g0305371	34.677	248	145	5	1	248	266	496	6.02e-41	153
Msa0132370	MtrunA17_Chr2g0297191	40.323	124	73	1	96	219	1044	1166	4.03e-23	103
Msa0132370	MtrunA17_Chr5g0403241	35.503	169	94	2	66	219	1334	1502	4.09e-23	103
Msa0132370	MtrunA17_Chr4g0075321	34.706	170	92	3	67	219	892	1059	4.43e-23	103
Msa0132370	MtrunA17_Chr8g0354821	32.836	201	97	6	61	224	489	688	5.65e-21	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132370	AT1G76710.2	64.375	480	155	6	6	470	11	489	0.0	612
Msa0132370	AT1G76710.1	64.375	480	155	6	6	470	11	489	0.0	612
Msa0132370	AT1G76710.4	63.190	489	155	7	6	470	11	498	0.0	603
Msa0132370	AT1G76710.3	60.947	507	155	7	6	470	11	516	0.0	597
Msa0132370	AT1G77300.2	42.060	233	127	4	15	244	958	1185	2.90e-56	202
Msa0132370	AT1G77300.1	42.060	233	127	4	15	244	958	1185	2.96e-56	202
Msa0132370	AT4G30860.1	37.387	222	128	4	7	228	259	469	1.26e-40	152
Msa0132370	AT3G59960.3	43.503	177	78	4	67	226	81	252	2.16e-34	130
Msa0132370	AT3G59960.2	43.503	177	78	4	67	226	81	252	2.16e-34	130
Msa0132370	AT3G59960.4	43.503	177	78	4	67	226	81	252	2.16e-34	130

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Find 124 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAAGGCCGAGGGTG+GGG	0.484563	1_3:-63357532	Msa0132370:CDS
AAAGTTGGCAATAAGAGGAA+TGG	0.497255	1_3:+63360623	None:intergenic
AAATAGAAAGCGAGGACATG+AGG	0.607787	1_3:-63355710	Msa0132370:CDS
AACATTTGAGCGCACCACAG+AGG	0.676482	1_3:+63356841	None:intergenic
AAGAAAATGGAATGTCATGG+GGG	0.698806	1_3:-63356964	Msa0132370:CDS
AAGAGTTGGAATATTTGCAC+TGG	0.522066	1_3:-63356937	Msa0132370:CDS
AAGATCCTGTTTGGTATCTT+GGG	0.359715	1_3:+63355680	None:intergenic
AAGCGAGAAAAGGGGTTTGG+GGG	0.426634	1_3:+63360669	None:intergenic
AAGCTTGCAGAAGCGAGAAA+AGG	0.513314	1_3:+63360659	None:intergenic
AAGTTGGCAATAAGAGGAAT+GGG	0.502123	1_3:+63360624	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAACCTGAGAACAAAAGT+TGG	+	chr1_3:63355045-63355064	None:intergenic	30.0%
TCTCAGGTTATTCATTGATA+TGG	-	chr1_3:63355053-63355072	Msa0132370:intron	30.0%
TCACATAAAGTCGAATATGA+AGG	+	chr1_3:63355114-63355133	None:intergenic	30.0%
TGCTATCTTCTACTTATGAT+TGG	-	chr1_3:63355315-63355334	Msa0132370:intron	30.0%
GTATTCAATTAGGCTTACTT+TGG	-	chr1_3:63355503-63355522	Msa0132370:CDS	30.0%
AATTGATTGATCGATGTTAC+CGG	+	chr1_3:63355806-63355825	None:intergenic	30.0%
TATATCCATTGAAGGAAGAT+TGG	+	chr1_3:63356003-63356022	None:intergenic	30.0%
AATGAAAATATCCACTAGCT+GGG	+	chr1_3:63356172-63356191	None:intergenic	30.0%
AAATGAAAATATCCACTAGC+TGG	+	chr1_3:63356173-63356192	None:intergenic	30.0%
ACATTAAAGATGAAAGAGAG+AGG	+	chr1_3:63356438-63356457	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	63354794	63360878	63354794	ID=Msa0132370;Name=Msa0132370
chr1_3	mRNA	63354794	63360878	63354794	ID=Msa0132370-mRNA-1;Parent=Msa0132370;Name=Msa0132370-mRNA-1;_AED=0.18;_eAED=0.18;_QI=278\|1\|1\|1\|1\|1\|10\|0\|473
chr1_3	exon	63354794	63355063	63354794	ID=Msa0132370-mRNA-1:exon:21231;Parent=Msa0132370-mRNA-1
chr1_3	exon	63355503	63355923	63355503	ID=Msa0132370-mRNA-1:exon:21230;Parent=Msa0132370-mRNA-1
chr1_3	exon	63356312	63356346	63356312	ID=Msa0132370-mRNA-1:exon:21229;Parent=Msa0132370-mRNA-1
chr1_3	exon	63356806	63357004	63356806	ID=Msa0132370-mRNA-1:exon:21228;Parent=Msa0132370-mRNA-1
chr1_3	exon	63357143	63357236	63357143	ID=Msa0132370-mRNA-1:exon:21227;Parent=Msa0132370-mRNA-1
chr1_3	exon	63357319	63357403	63357319	ID=Msa0132370-mRNA-1:exon:21226;Parent=Msa0132370-mRNA-1
chr1_3	exon	63357507	63357593	63357507	ID=Msa0132370-mRNA-1:exon:21225;Parent=Msa0132370-mRNA-1
chr1_3	exon	63358227	63358383	63358227	ID=Msa0132370-mRNA-1:exon:21224;Parent=Msa0132370-mRNA-1
chr1_3	exon	63360413	63360480	63360413	ID=Msa0132370-mRNA-1:exon:21223;Parent=Msa0132370-mRNA-1
chr1_3	exon	63360598	63360878	63360598	ID=Msa0132370-mRNA-1:exon:21222;Parent=Msa0132370-mRNA-1
chr1_3	five_prime_UTR	63360601	63360878	63360601	ID=Msa0132370-mRNA-1:five_prime_utr;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63360598	63360600	63360598	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63360413	63360480	63360413	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63358227	63358383	63358227	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63357507	63357593	63357507	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63357319	63357403	63357319	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63357143	63357236	63357143	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63356806	63357004	63356806	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63356312	63356346	63356312	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63355503	63355923	63355503	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1
chr1_3	CDS	63354794	63355063	63354794	ID=Msa0132370-mRNA-1:cds;Parent=Msa0132370-mRNA-1

Gene Sequence

>Msa0132370

ATGGAACCTCATGCTGCTGAAGATTTGCCTCAATACATTCATATCAATCAAAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATGATGAAGATGATCCCGACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTGACCAGCACTGAATGCACCCCTGGATTTTGCCCTTGTGGCATCCTTTGTAAAAATCAGAAATTTCAGAAATGTGAATATGCAAAAACCAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAGCGCAGATCCCATACTTATGAAACTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCTATCGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAACCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGAATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACGTCAAATGTTGGTGGACAGAGTGAACAATCCATGGCTATTATACTGAAAGCTGAAGAACCATCGGAGTCCACTGTTTTAAATATTCAACCACTGAATTCAATTGGGATCAATGGCTTAGGTATTCAGAAAATGAAAACTGAAATAGAAAGCGAGGACATGAGGTTGTACTCCCAAGATACCAAACAGGATCTTCCCCAAAAAAATGCGATATCGCGCATTCGAAGTAACACTGCAGGAGGAAAGTCCATCTCTACCAAAAGATCAAAGGGGGGAAAGCTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAGGAGGAGATTTTAGATTATGAGAAAAGAAAAGATGACGCTACGGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAAGGATACCCAAGACAGTGTATCTACGACAGTAGCAGAGAAGTGGATACAGGCTTCCTGCCTAAAACTCAAGGCGGAGTTTGATCTTTACTCGTCAATTATTAAAAATGTTGCTTGTACTCCTCAAAGGGCACCCGGCCAAGCAAAAGGTACTGAAGTCGATAACGAAGACAAAATGAAGCTTTTGACGTTCTCG

Protein sequence

>Msa0132370

MEPHAAEDLPQYIHINQNDFFMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGFCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYETQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVMGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSEFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVGGQSEQSMAIILKAEEPSESTVLNIQPLNSIGINGLGIQKMKTEIESEDMRLYSQDTKQDLPQKNAISRIRSNTAGGKSISTKRSKGGKLKNRIQKKIDAKYAAGLLASKEAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHEKDTQDSVSTTVAEKWIQASCLKLKAEFDLYSSIIKNVACTPQRAPGQAKGTEVDNEDKMKLLTFS