AlfalfaGEDB | Msa0132690

M. sativa cultivar zhongmu-4 / Msa0132690

KEGG: K17535
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF01842.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132690	sp\|O22558\|STY8_ARATH	49.053	528	227	8	25	527	32	542	1.57e-165	483

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132690	A0A396JTR2	94.746	552	8	3	1	536	1	547	0.0	1061

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132690	MtrunA17_Chr1g0202101	94.746	552	8	3	1	536	1	547	0.0	1061
Msa0132690	MtrunA17_Chr5g0406251	48.689	534	236	9	25	529	29	553	2.55e-165	481
Msa0132690	MtrunA17_Chr1g0211611	46.751	554	252	9	10	532	21	562	9.61e-159	464
Msa0132690	MtrunA17_Chr1g0157231	49.716	352	123	3	182	479	1	352	1.53e-110	334
Msa0132690	MtrunA17_Chr3g0143531	58.268	254	89	3	285	524	25	275	2.80e-100	304
Msa0132690	MtrunA17_Chr3g0090261	46.667	270	125	4	277	527	74	343	2.78e-77	248
Msa0132690	MtrunA17_Chr4g0075541	41.751	297	153	5	244	521	47	342	1.26e-67	223
Msa0132690	MtrunA17_Chr2g0282321	38.567	293	159	4	252	523	128	420	2.10e-67	225
Msa0132690	MtrunA17_Chr3g0117731	43.051	295	143	7	254	528	30	319	5.61e-67	220
Msa0132690	MtrunA17_Chr4g0059121	41.115	287	146	5	254	521	31	313	1.34e-65	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0132690	AT2G17700.1	49.053	528	227	8	25	527	32	542	1.60e-166	483
Msa0132690	AT4G38470.2	48.868	530	229	8	26	527	31	546	4.18e-164	478
Msa0132690	AT4G38470.1	48.859	526	227	8	26	523	31	542	3.71e-163	476
Msa0132690	AT4G35780.1	47.834	531	234	10	25	527	33	548	1.98e-162	474
Msa0132690	AT4G38470.3	48.861	483	206	7	26	481	31	499	2.57e-147	433
Msa0132690	AT4G31170.7	46.667	270	125	4	277	527	123	392	1.55e-75	245
Msa0132690	AT4G31170.6	46.667	270	125	4	277	527	123	392	1.55e-75	245
Msa0132690	AT4G31170.5	46.667	270	125	4	277	527	123	392	1.55e-75	245
Msa0132690	AT4G31170.1	46.667	270	125	4	277	527	123	392	1.55e-75	245
Msa0132690	AT4G31170.2	46.667	270	125	4	277	527	123	392	1.55e-75	245

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Find 125 sgRNAs with CRISPR-Local

Find 885 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGTAGCAAGGAGTG+AGG	0.685235	1_3:+63925237	Msa0132690:CDS
AAAATAGCATCTGGATCCTG+TGG	0.606645	1_3:+63927722	Msa0132690:CDS
AAAATATTATTTCATGAACT+GGG	0.598200	1_3:-63923778	None:intergenic
AACCAAACGGTTATAAACGT+CGG	0.629986	1_3:-63919607	None:intergenic
AACCGACGTTTATAACCGTT+TGG	0.446484	1_3:+63919605	Msa0132690:CDS
AACTGGAACCTATAGATGGA+TGG	0.581365	1_3:+63930660	Msa0132690:CDS
AAGGGAATGGAGTATTTGCA+TGG	0.658553	1_3:+63930419	Msa0132690:CDS
AAGGGAGTATCCATCAGTTG+TGG	0.595706	1_3:-63924529	None:intergenic
AATAAACGAATATGGTAAAC+AGG	0.413852	1_3:-63920015	None:intergenic
AATATTGCTACTAGGACAGA+TGG	0.575414	1_3:+63921124	Msa0132690:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGTGAAGAAGAAATAGAA+AGG	-	chr1_3:63919469-63919488	None:intergenic	30.0%
TATAGATCAAGATTGTTGCA+TGG	-	chr1_3:63919488-63919507	None:intergenic	30.0%
TCATAGAAGTCTTCTTGATT+TGG	+	chr1_3:63919972-63919991	Msa0132690:CDS	30.0%
TTACCATATTCGTTTATTGG+AGG	+	chr1_3:63920020-63920039	Msa0132690:CDS	30.0%
ATACCTCCAATAAACGAATA+TGG	-	chr1_3:63920026-63920045	None:intergenic	30.0%
TGATTCTTACCAAACAAATG+AGG	+	chr1_3:63920295-63920314	Msa0132690:intron	30.0%
TGCTTGCATATATTCATCAA+AGG	+	chr1_3:63920324-63920343	Msa0132690:intron	30.0%
AAGAAAATAATAGAGCTTGG+GGG	-	chr1_3:63920629-63920648	None:intergenic	30.0%
AAATGATAGATGGTGATCTT+GGG	+	chr1_3:63920708-63920727	Msa0132690:intron	30.0%
TATAATGCATATACACTCAC+AGG	+	chr1_3:63921257-63921276	Msa0132690:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	63919399	63933470	63919399	ID=Msa0132690;Name=Msa0132690
chr1_3	mRNA	63919399	63933470	63919399	ID=Msa0132690-mRNA-1;Parent=Msa0132690;Name=Msa0132690-mRNA-1;_AED=0.33;_eAED=0.33;_QI=126\|0.86\|0.81\|1\|1\|1\|16\|401\|536
chr1_3	exon	63919399	63919709	63919399	ID=Msa0132690-mRNA-1:exon:21380;Parent=Msa0132690-mRNA-1
chr1_3	exon	63919927	63920046	63919927	ID=Msa0132690-mRNA-1:exon:21381;Parent=Msa0132690-mRNA-1
chr1_3	exon	63921138	63921233	63921138	ID=Msa0132690-mRNA-1:exon:21382;Parent=Msa0132690-mRNA-1
chr1_3	exon	63921358	63921477	63921358	ID=Msa0132690-mRNA-1:exon:21383;Parent=Msa0132690-mRNA-1
chr1_3	exon	63923760	63923832	63923760	ID=Msa0132690-mRNA-1:exon:21384;Parent=Msa0132690-mRNA-1
chr1_3	exon	63924474	63924584	63924474	ID=Msa0132690-mRNA-1:exon:21385;Parent=Msa0132690-mRNA-1
chr1_3	exon	63925208	63925258	63925208	ID=Msa0132690-mRNA-1:exon:21386;Parent=Msa0132690-mRNA-1
chr1_3	exon	63927611	63927750	63927611	ID=Msa0132690-mRNA-1:exon:21387;Parent=Msa0132690-mRNA-1
chr1_3	exon	63927866	63927973	63927866	ID=Msa0132690-mRNA-1:exon:21388;Parent=Msa0132690-mRNA-1
chr1_3	exon	63928867	63928901	63928867	ID=Msa0132690-mRNA-1:exon:21389;Parent=Msa0132690-mRNA-1
chr1_3	exon	63930324	63930499	63930324	ID=Msa0132690-mRNA-1:exon:21390;Parent=Msa0132690-mRNA-1
chr1_3	exon	63930595	63930690	63930595	ID=Msa0132690-mRNA-1:exon:21391;Parent=Msa0132690-mRNA-1
chr1_3	exon	63931023	63931103	63931023	ID=Msa0132690-mRNA-1:exon:21392;Parent=Msa0132690-mRNA-1
chr1_3	exon	63931239	63931289	63931239	ID=Msa0132690-mRNA-1:exon:21393;Parent=Msa0132690-mRNA-1
chr1_3	exon	63932758	63932898	63932758	ID=Msa0132690-mRNA-1:exon:21394;Parent=Msa0132690-mRNA-1
chr1_3	exon	63933043	63933470	63933043	ID=Msa0132690-mRNA-1:exon:21395;Parent=Msa0132690-mRNA-1
chr1_3	five_prime_UTR	63919399	63919524	63919399	ID=Msa0132690-mRNA-1:five_prime_utr;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63919525	63919709	63919525	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63919927	63920046	63919927	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63921138	63921233	63921138	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63921358	63921477	63921358	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63923760	63923832	63923760	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63924474	63924584	63924474	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63925208	63925258	63925208	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63927611	63927750	63927611	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63927866	63927973	63927866	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63928867	63928901	63928867	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63930324	63930499	63930324	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63930595	63930690	63930595	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63931023	63931103	63931023	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63931239	63931289	63931239	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63932758	63932898	63932758	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	CDS	63933043	63933069	63933043	ID=Msa0132690-mRNA-1:cds;Parent=Msa0132690-mRNA-1
chr1_3	three_prime_UTR	63933070	63933470	63933070	ID=Msa0132690-mRNA-1:three_prime_utr;Parent=Msa0132690-mRNA-1

Gene Sequence

>Msa0132690

ATGGATTTACTTGAAGGCGTTGGAGAGAGTTCATCACCACCGCGTTCCTTCGGTGGCGGTTACAGTAACTACGATATCAGAACCGACGTTTATAACCGTTTGGTTGAAACCGGTCATGAACAAGCCGTATCGAATCCCGAGTTTCGTGAACAGCTTGATTCTCACTTCAATCGTTTGCCTCCAAGTTATGGACTTGATGTGAATGTTGATAGAGCTGAAGATGTATTACTTCATAGAAGTCTTCTTGATTTGGCAAGAGATCCTGATAAGCGTCCTGTTTACCATATTCGTTTATTGGAGGTATTGACAGATGGTGAAGATCAAGAAATTGTTAATACTCATACTCGCCCTGAGTCTTCTTCTCATGCAACAAATGGGGGAGTCATAGCATCTAATAAGAGGACAAGAGATCTGGCAACTGAGTTTGAGACTTACTCGAAGCTTGAGGATCTAAATTTGGATGTTATGAAGAACTCCAAGGATACAACGGAAAAATTTGTAACTGACAGCTTTTCCCAGAGGCATGAACATTCAAGTGTCCCAGTTCATGAAATAATATTTTCTGCTGTTGACAAACCAAAGCTTTTAAGTCAGCTGTCCGCATTGCTGTCTGATATCGGGCTTAACATCCGTGAAGCACATGTATTTTCCACAACTGATGGATACTCCCTTGATGTTTTTGTGGTGGATGGATGGCCACTAGAGGAAACAGATGGTTTGTATGCTGCTATGGAAAAAGCTGTAGCAAGGAGTGAGGGGTCATGGTCTCATTCTTCAAATTCTCATTCAGCTGTGGAGAAAGCCTTAGCAGCAGAAGGAAAATCTGGAGACTGGGAAATAGACAGGAGGTCATTAAAGATAGGAGAGAAAATAGCATCTGGATCCTGTGGAGATTTGTATCATGGAGTTTATCTTGGCGAAGATGTTGCTGTTAAGGTTCTGAAATCTGATCAACTGAATGATGCCTTAGAGGATGAGTTTACTCAAGAAATAGCAATTTTGAGACAGGTAGAACATAAAAATGTTGTCCGTTTCATTGAGTATATGACTGGGGGAAGTCTGTATGATTACTTGCACAAAAATCATAATGTCTTGGAGCTGTCTCAATTACTCAAGTTCGCAATTGATGTCTGCAAGGGAATGGAGTATTTGCATGGAAACAACATAATTCACAGGGATCTGAAGACAGCCAATTTGCTGATGGATACTCACAATGTTGTTAAAGTGGCAGATTTTGGAGTTGCTCGGTTCCTAATTCAGGGAGGAGTGATGACTGCAGAAACTGGAACCTATAGATGGATGGCTCCAGAGGTCATAAACCACCAGCCTTATGATCAAAAGGCAGATGTGTTCAGTTTTTCAATAGTCCTATGGGAACTAGTGACAGCAAAGATACCATATGATACAATGACTCCACTACAAGCTGCTTTGGGTGTGAGACAGGGGCTGCGACCAGAACTTCCAAAGAACGGGCACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAATTCCTAGCAGTCGTCCATCCTTCAATGAGATAAGAGTTGAACTTGAAAATCTTTTGCTAGAAGTGGAGAATTATTCAGAAGTTAATGGTGCTTAA

Protein sequence

>Msa0132690

MDLLEGVGESSSPPRSFGGGYSNYDIRTDVYNRLVETGHEQAVSNPEFREQLDSHFNRLPPSYGLDVNVDRAEDVLLHRSLLDLARDPDKRPVYHIRLLEVLTDGEDQEIVNTHTRPESSSHATNGGVIASNKRTRDLATEFETYSKLEDLNLDVMKNSKDTTEKFVTDSFSQRHEHSSVPVHEIIFSAVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPLEETDGLYAAMEKAVARSEGSWSHSSNSHSAVEKALAAEGKSGDWEIDRRSLKIGEKIASGSCGDLYHGVYLGEDVAVKVLKSDQLNDALEDEFTQEIAILRQVEHKNVVRFIEYMTGGSLYDYLHKNHNVLELSQLLKFAIDVCKGMEYLHGNNIIHRDLKTANLLMDTHNVVKVADFGVARFLIQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKIPYDTMTPLQAALGVRQGLRPELPKNGHPKLLDLMQRCWEAIPSSRPSFNEIRVELENLLLEVENYSEVNGA*