Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133000 | XP_039685680.1 | 84.314 | 612 | 80 | 1 | 1 | 596 | 1 | 612 | 0.0 | 1060 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133000 | sp|Q9SZL8|FRS5_ARATH | 27.733 | 494 | 333 | 7 | 32 | 523 | 70 | 541 | 4.12e-57 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133000 | D3YBB9 | 76.182 | 592 | 136 | 1 | 1 | 587 | 49 | 640 | 0.0 | 956 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0133000 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133000 | MtrunA17_Chr2g0324011 | 31.610 | 503 | 313 | 8 | 36 | 532 | 8 | 485 | 6.71e-88 | 284 |
| Msa0133000 | MtrunA17_Chr3g0082121 | 32.780 | 482 | 291 | 6 | 41 | 520 | 49 | 499 | 9.65e-83 | 273 |
| Msa0133000 | MtrunA17_Chr1g0202341 | 31.849 | 449 | 276 | 8 | 34 | 478 | 50 | 472 | 2.46e-67 | 231 |
| Msa0133000 | MtrunA17_Chr8g0363841 | 29.899 | 495 | 317 | 9 | 40 | 530 | 22 | 490 | 1.32e-65 | 227 |
| Msa0133000 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 4.45e-62 | 208 |
| Msa0133000 | MtrunA17_Chr1g0203721 | 26.953 | 512 | 320 | 11 | 40 | 534 | 68 | 542 | 1.53e-57 | 207 |
| Msa0133000 | MtrunA17_Chr2g0296781 | 29.741 | 464 | 293 | 9 | 39 | 499 | 1 | 434 | 4.73e-57 | 204 |
| Msa0133000 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 3.09e-56 | 199 |
| Msa0133000 | MtrunA17_Chr5g0448761 | 27.944 | 501 | 329 | 9 | 32 | 524 | 57 | 533 | 6.63e-56 | 202 |
| Msa0133000 | MtrunA17_Chr6g0458391 | 26.789 | 545 | 337 | 13 | 41 | 575 | 231 | 723 | 4.16e-53 | 194 |
| Msa0133000 | MtrunA17_Chr6g0477261 | 33.333 | 321 | 209 | 3 | 180 | 499 | 7 | 323 | 7.79e-53 | 191 |
| Msa0133000 | MtrunA17_Chr2g0287651 | 27.991 | 468 | 299 | 11 | 39 | 499 | 79 | 515 | 8.62e-53 | 194 |
| Msa0133000 | MtrunA17_Chr7g0258861 | 34.314 | 306 | 177 | 6 | 36 | 336 | 8 | 294 | 2.22e-49 | 174 |
| Msa0133000 | MtrunA17_Chr5g0441581 | 26.810 | 511 | 318 | 13 | 32 | 530 | 26 | 492 | 2.68e-49 | 182 |
| Msa0133000 | MtrunA17_Chr1g0203051 | 23.301 | 515 | 365 | 6 | 50 | 562 | 94 | 580 | 1.30e-46 | 174 |
| Msa0133000 | MtrunA17_Chr1g0198761 | 27.820 | 532 | 338 | 15 | 26 | 540 | 38 | 540 | 2.69e-46 | 174 |
| Msa0133000 | MtrunA17_Chr1g0196541 | 27.703 | 444 | 288 | 12 | 39 | 479 | 1 | 414 | 1.65e-44 | 169 |
| Msa0133000 | MtrunA17_Chr5g0440451 | 24.689 | 563 | 362 | 13 | 34 | 576 | 42 | 562 | 6.94e-43 | 165 |
| Msa0133000 | MtrunA17_Chr2g0290391 | 26.481 | 540 | 345 | 15 | 38 | 559 | 54 | 559 | 8.89e-43 | 163 |
| Msa0133000 | MtrunA17_Chr5g0431001 | 27.803 | 446 | 287 | 11 | 40 | 473 | 66 | 488 | 1.96e-42 | 159 |
| Msa0133000 | MtrunA17_Chr2g0291591 | 25.845 | 503 | 309 | 14 | 16 | 499 | 44 | 501 | 5.18e-42 | 159 |
| Msa0133000 | MtrunA17_Chr2g0276841 | 26.719 | 509 | 314 | 14 | 49 | 536 | 84 | 554 | 5.33e-42 | 161 |
| Msa0133000 | MtrunA17_Chr2g0329031 | 25.726 | 482 | 311 | 11 | 23 | 496 | 2 | 444 | 5.44e-41 | 158 |
| Msa0133000 | MtrunA17_Chr3g0118611 | 29.248 | 359 | 241 | 6 | 221 | 576 | 111 | 459 | 2.74e-40 | 156 |
| Msa0133000 | MtrunA17_Chr6g0475591 | 89.041 | 73 | 8 | 0 | 188 | 260 | 1 | 73 | 5.34e-39 | 137 |
| Msa0133000 | MtrunA17_Chr2g0294841 | 28.009 | 457 | 286 | 13 | 41 | 482 | 51 | 479 | 1.08e-37 | 149 |
| Msa0133000 | MtrunA17_Chr1g0207551 | 25.100 | 502 | 333 | 11 | 31 | 523 | 30 | 497 | 1.13e-37 | 149 |
| Msa0133000 | MtrunA17_Chr2g0291581 | 24.554 | 448 | 299 | 8 | 38 | 484 | 74 | 483 | 1.27e-35 | 142 |
| Msa0133000 | MtrunA17_Chr3g0080351 | 24.699 | 498 | 338 | 10 | 34 | 529 | 75 | 537 | 4.65e-35 | 141 |
| Msa0133000 | MtrunA17_Chr2g0287061 | 24.950 | 501 | 302 | 14 | 41 | 536 | 189 | 620 | 5.41e-35 | 140 |
| Msa0133000 | MtrunA17_Chr5g0448511 | 27.097 | 310 | 218 | 4 | 216 | 523 | 1 | 304 | 5.75e-35 | 139 |
| Msa0133000 | MtrunA17_Chr1g0149131 | 32.203 | 118 | 70 | 3 | 333 | 446 | 1 | 112 | 1.39e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133000 | AT4G38180.1 | 27.733 | 494 | 333 | 7 | 32 | 523 | 70 | 541 | 4.19e-58 | 208 |
| Msa0133000 | AT3G06250.2 | 25.984 | 508 | 299 | 12 | 34 | 536 | 189 | 624 | 1.15e-41 | 161 |
| Msa0133000 | AT3G06250.1 | 25.984 | 508 | 299 | 12 | 34 | 536 | 189 | 624 | 1.15e-41 | 161 |
| Msa0133000 | AT3G06250.3 | 25.984 | 508 | 299 | 12 | 34 | 536 | 189 | 624 | 1.15e-41 | 161 |
| Msa0133000 | AT4G15090.1 | 25.572 | 481 | 322 | 11 | 50 | 523 | 66 | 517 | 2.08e-39 | 154 |
| Msa0133000 | AT4G15090.5 | 25.572 | 481 | 322 | 11 | 50 | 523 | 66 | 517 | 2.08e-39 | 154 |
| Msa0133000 | AT4G15090.3 | 25.572 | 481 | 322 | 11 | 50 | 523 | 66 | 517 | 2.08e-39 | 154 |
| Msa0133000 | AT4G15090.2 | 25.572 | 481 | 322 | 11 | 50 | 523 | 66 | 517 | 2.08e-39 | 154 |
| Msa0133000 | AT4G15090.4 | 25.572 | 481 | 322 | 11 | 50 | 523 | 66 | 517 | 2.08e-39 | 154 |
| Msa0133000 | AT4G38170.1 | 28.425 | 292 | 197 | 5 | 235 | 523 | 24 | 306 | 2.34e-38 | 149 |
| Msa0133000 | AT1G76320.3 | 25.607 | 453 | 295 | 11 | 50 | 496 | 12 | 428 | 1.04e-37 | 149 |
| Msa0133000 | AT1G76320.2 | 25.607 | 453 | 295 | 11 | 50 | 496 | 12 | 428 | 2.14e-37 | 148 |
| Msa0133000 | AT1G76320.1 | 25.607 | 453 | 295 | 11 | 50 | 496 | 12 | 428 | 2.44e-37 | 148 |
| Msa0133000 | AT1G76320.4 | 25.607 | 453 | 295 | 11 | 50 | 496 | 12 | 428 | 2.44e-37 | 148 |
| Msa0133000 | AT1G10240.2 | 25.050 | 499 | 335 | 13 | 49 | 536 | 62 | 532 | 4.77e-37 | 147 |
| Msa0133000 | AT1G10240.1 | 25.050 | 499 | 335 | 13 | 49 | 536 | 62 | 532 | 4.77e-37 | 147 |
| Msa0133000 | AT5G18960.2 | 25.000 | 520 | 312 | 15 | 24 | 536 | 200 | 648 | 2.00e-36 | 145 |
| Msa0133000 | AT5G18960.1 | 25.000 | 520 | 312 | 15 | 24 | 536 | 200 | 648 | 2.00e-36 | 145 |
| Msa0133000 | AT5G28530.1 | 24.663 | 519 | 344 | 14 | 40 | 540 | 60 | 549 | 3.81e-36 | 144 |
| Msa0133000 | AT2G27110.2 | 24.427 | 524 | 332 | 12 | 4 | 523 | 23 | 486 | 4.65e-36 | 144 |
| Msa0133000 | AT2G27110.1 | 24.427 | 524 | 332 | 12 | 4 | 523 | 23 | 486 | 4.65e-36 | 144 |
| Msa0133000 | AT5G28530.3 | 24.470 | 519 | 341 | 15 | 40 | 540 | 60 | 545 | 1.77e-35 | 142 |
| Msa0133000 | AT5G28530.2 | 24.470 | 519 | 341 | 15 | 40 | 540 | 60 | 545 | 1.77e-35 | 142 |
| Msa0133000 | AT2G27110.3 | 27.796 | 313 | 217 | 4 | 213 | 523 | 36 | 341 | 2.49e-35 | 142 |
| Msa0133000 | AT3G22170.2 | 22.626 | 495 | 341 | 10 | 34 | 523 | 69 | 526 | 5.24e-33 | 135 |
| Msa0133000 | AT3G22170.1 | 22.626 | 495 | 341 | 10 | 34 | 523 | 69 | 526 | 5.24e-33 | 135 |
| Msa0133000 | AT1G80010.1 | 25.558 | 493 | 312 | 18 | 41 | 514 | 101 | 557 | 4.04e-32 | 132 |
| Msa0133000 | AT2G32250.5 | 24.569 | 464 | 274 | 12 | 25 | 483 | 30 | 422 | 8.88e-30 | 125 |
| Msa0133000 | AT2G32250.2 | 24.569 | 464 | 274 | 12 | 25 | 483 | 30 | 422 | 1.10e-29 | 125 |
| Msa0133000 | AT2G32250.4 | 24.569 | 464 | 274 | 12 | 25 | 483 | 30 | 422 | 1.10e-29 | 125 |
| Msa0133000 | AT2G32250.6 | 24.569 | 464 | 274 | 12 | 25 | 483 | 30 | 422 | 1.10e-29 | 125 |
| Msa0133000 | AT2G32250.1 | 24.569 | 464 | 274 | 12 | 25 | 483 | 30 | 422 | 1.10e-29 | 125 |
| Msa0133000 | AT2G32250.3 | 24.569 | 464 | 274 | 12 | 25 | 483 | 30 | 422 | 1.10e-29 | 125 |
| Msa0133000 | AT2G32250.8 | 24.601 | 439 | 257 | 11 | 50 | 483 | 12 | 381 | 2.23e-29 | 124 |
| Msa0133000 | AT2G32250.7 | 24.601 | 439 | 257 | 11 | 50 | 483 | 12 | 381 | 2.51e-29 | 124 |
| Msa0133000 | AT1G52520.1 | 22.804 | 535 | 356 | 16 | 41 | 557 | 91 | 586 | 5.72e-29 | 122 |
| Msa0133000 | AT4G19990.7 | 24.561 | 456 | 275 | 11 | 41 | 483 | 41 | 440 | 2.55e-27 | 117 |
| Msa0133000 | AT4G19990.3 | 24.561 | 456 | 275 | 11 | 41 | 483 | 27 | 426 | 2.85e-27 | 117 |
| Msa0133000 | AT4G19990.4 | 24.561 | 456 | 275 | 11 | 41 | 483 | 27 | 426 | 2.85e-27 | 117 |
| Msa0133000 | AT4G19990.5 | 24.561 | 456 | 275 | 11 | 41 | 483 | 27 | 426 | 3.19e-27 | 117 |
| Msa0133000 | AT4G19990.6 | 24.561 | 456 | 275 | 11 | 41 | 483 | 27 | 426 | 3.90e-27 | 117 |
| Msa0133000 | AT4G19990.2 | 24.561 | 456 | 275 | 11 | 41 | 483 | 27 | 426 | 3.90e-27 | 117 |
| Msa0133000 | AT4G19990.1 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 1.53e-26 | 115 |
Find 126 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 1_3:-64251542 | Msa0133000:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 1_3:+64250407 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1_3:-64251275 | Msa0133000:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 1_3:-64251823 | Msa0133000:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 1_3:-64252336 | Msa0133000:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 1_3:-64251790 | Msa0133000:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 1_3:+64251696 | None:intergenic |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.296901 | 1_3:+64251678 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 1_3:+64250413 | None:intergenic |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.309229 | 1_3:-64250561 | Msa0133000:three_prime_UTR |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 1_3:-64251501 | Msa0133000:CDS |
| GAGGGATAATCATGTTGATT+TGG | 0.335640 | 1_3:-64251242 | Msa0133000:CDS |
| ACCGATATTTATTGTTTGTT+CGG | 0.341758 | 1_3:+64252286 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 1_3:-64250165 | Msa0133000:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 1_3:+64250345 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 1_3:-64250978 | Msa0133000:CDS |
| TTTCAATTTATCACATCTAA+TGG | 0.356205 | 1_3:-64253199 | None:intergenic |
| TCATGTTGATTTGGACTTCA+AGG | 0.359475 | 1_3:-64251233 | Msa0133000:CDS |
| AATTATGATCTTCAAACCTT+GGG | 0.363102 | 1_3:+64250930 | None:intergenic |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 1_3:+64250685 | None:intergenic |
| CTCAACAGTGTTCTTGAGGC+AGG | 0.370479 | 1_3:-64250569 | Msa0133000:three_prime_UTR |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 1_3:-64250184 | Msa0133000:three_prime_UTR |
| AACAATAAATATCGGTCATT+AGG | 0.381093 | 1_3:-64252279 | Msa0133000:intron |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 1_3:+64252816 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 1_3:-64250421 | Msa0133000:three_prime_UTR |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 1_3:+64250431 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1_3:-64251101 | Msa0133000:CDS |
| GAGGAGTTTCTTCTTTCTAA+AGG | 0.401366 | 1_3:-64250536 | Msa0133000:three_prime_UTR |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 1_3:+64253055 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 1_3:-64253045 | Msa0133000:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 1_3:-64250853 | Msa0133000:three_prime_UTR |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 1_3:-64252974 | Msa0133000:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 1_3:-64250895 | Msa0133000:three_prime_UTR |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1_3:-64252639 | Msa0133000:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 1_3:-64252757 | Msa0133000:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 1_3:-64252725 | Msa0133000:CDS |
| CAATTATGATCTTCAAACCT+TGG | 0.445299 | 1_3:+64250929 | None:intergenic |
| TACACGTGTTTGCGCGGATC+CGG | 0.445666 | 1_3:-64250609 | Msa0133000:three_prime_UTR |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 1_3:+64251685 | None:intergenic |
| CAACTCACAAAATAAGAAAT+CGG | 0.447367 | 1_3:-64252931 | Msa0133000:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1_3:-64252774 | Msa0133000:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 1_3:+64250752 | None:intergenic |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 1_3:-64252609 | Msa0133000:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 1_3:-64251401 | Msa0133000:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 1_3:-64253120 | Msa0133000:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 1_3:-64251611 | Msa0133000:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 1_3:-64251447 | Msa0133000:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.459220 | 1_3:-64252287 | Msa0133000:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 1_3:-64250852 | Msa0133000:three_prime_UTR |
| TTGTCTGTGAACCATCTGTT+GGG | 0.466795 | 1_3:-64250460 | Msa0133000:three_prime_UTR |
| CGCAAACACGTGTAGAAAGC+TGG | 0.476070 | 1_3:+64250618 | None:intergenic |
| ATCATAATTGACTTGATGAA+AGG | 0.478258 | 1_3:-64250916 | Msa0133000:exon |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 1_3:-64251402 | Msa0133000:CDS |
| TTCATTCAAATCGTATGCAT+TGG | 0.479750 | 1_3:-64251414 | Msa0133000:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 1_3:-64252564 | Msa0133000:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1_3:+64251099 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 1_3:+64252780 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 1_3:-64252987 | Msa0133000:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 1_3:-64252496 | Msa0133000:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1_3:-64251085 | Msa0133000:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 1_3:+64251810 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 1_3:-64251500 | Msa0133000:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.492141 | 1_3:-64252925 | Msa0133000:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1_3:-64251261 | Msa0133000:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 1_3:+64251181 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 1_3:-64252577 | Msa0133000:CDS |
| TGTCTTCTGCAACATCAACT+TGG | 0.500580 | 1_3:+64252391 | None:intergenic |
| AGAAATATTTCAGATGTCTC+CGG | 0.500588 | 1_3:+64250590 | None:intergenic |
| ATTGGTCTTCAGCTTGGGTG+AGG | 0.501327 | 1_3:-64251396 | Msa0133000:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 1_3:+64252525 | None:intergenic |
| TCATAATTGACTTGATGAAA+GGG | 0.510810 | 1_3:-64250915 | Msa0133000:exon |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 1_3:+64250936 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 1_3:+64251293 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 1_3:-64252721 | Msa0133000:CDS |
| GTTGTCTGTGAACCATCTGT+TGG | 0.527141 | 1_3:-64250461 | Msa0133000:three_prime_UTR |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1_3:+64251104 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 1_3:-64250355 | Msa0133000:three_prime_UTR |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 1_3:-64250695 | Msa0133000:three_prime_UTR |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 1_3:-64252880 | Msa0133000:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 1_3:+64251298 | None:intergenic |
| TGTTATGCTTGTAACAAAGA+AGG | 0.541604 | 1_3:-64252891 | Msa0133000:CDS |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1_3:-64251084 | Msa0133000:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 1_3:-64253055 | Msa0133000:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1_3:-64252879 | Msa0133000:CDS |
| ACTTCAACAACTCACCAGCC+TGG | 0.557542 | 1_3:+64251665 | None:intergenic |
| CGTCAAAAGGAGATGGTGGA+TGG | 0.563511 | 1_3:-64252483 | Msa0133000:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 1_3:-64252429 | Msa0133000:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 1_3:-64253096 | Msa0133000:CDS |
| TGTCCACTCTCAGATGAAGT+TGG | 0.568526 | 1_3:+64253128 | None:intergenic |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 1_3:-64252561 | Msa0133000:CDS |
| TCAACAGTGTTCTTGAGGCA+GGG | 0.573343 | 1_3:-64250568 | Msa0133000:three_prime_UTR |
| ACTTCAAGGCTGCAAACACT+AGG | 0.573822 | 1_3:-64251219 | Msa0133000:CDS |
| ATTTCTCAACAGTGTTCTTG+AGG | 0.575201 | 1_3:-64250573 | Msa0133000:three_prime_UTR |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 1_3:+64251180 | None:intergenic |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 1_3:-64250946 | Msa0133000:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.581370 | 1_3:-64252487 | Msa0133000:CDS |
| AAATGCTCATGTTTATGTAA+TGG | 0.581422 | 1_3:+64252681 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 1_3:+64250449 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 1_3:-64250330 | Msa0133000:three_prime_UTR |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 1_3:+64251159 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 1_3:-64252570 | Msa0133000:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 1_3:-64251679 | Msa0133000:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 1_3:-64250268 | Msa0133000:three_prime_UTR |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 1_3:-64252490 | Msa0133000:CDS |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 1_3:-64250311 | Msa0133000:three_prime_UTR |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 1_3:+64250661 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 1_3:-64252576 | Msa0133000:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 1_3:-64251183 | Msa0133000:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1_3:-64251098 | Msa0133000:CDS |
| GCTTTCTACACGTGTTTGCG+CGG | 0.608062 | 1_3:-64250615 | Msa0133000:three_prime_UTR |
| GATTTCAGCTTATCGACAGA+CGG | 0.615636 | 1_3:+64250710 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 1_3:+64252831 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 1_3:+64251445 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 1_3:-64252556 | Msa0133000:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.623538 | 1_3:+64250931 | None:intergenic |
| ATACCAACTTCATCTGAGAG+TGG | 0.627399 | 1_3:-64253131 | Msa0133000:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 1_3:-64250312 | Msa0133000:three_prime_UTR |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 1_3:-64251610 | Msa0133000:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1_3:-64251260 | Msa0133000:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 1_3:-64252722 | Msa0133000:CDS |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 1_3:+64251139 | None:intergenic |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 1_3:+64250834 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 1_3:-64251683 | Msa0133000:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 1_3:-64250851 | Msa0133000:three_prime_UTR |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 1_3:-64251000 | Msa0133000:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 1_3:-64250999 | Msa0133000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr1_3:64253072-64253091 | Msa0133000:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr1_3:64250366-64250385 | Msa0133000:three_prime_UTR | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr1_3:64250628-64250647 | Msa0133000:three_prime_UTR | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr1_3:64251221-64251240 | Msa0133000:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr1_3:64251881-64251900 | Msa0133000:intron | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr1_3:64253169-64253188 | Msa0133000:five_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr1_3:64250257-64250276 | Msa0133000:three_prime_UTR | 25.0% |
| ! | CAACTCACAAAATAAGAAAT+CGG | - | chr1_3:64250422-64250441 | Msa0133000:three_prime_UTR | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr1_3:64250428-64250447 | Msa0133000:three_prime_UTR | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr1_3:64250631-64250650 | Msa0133000:three_prime_UTR | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr1_3:64250632-64250651 | Msa0133000:three_prime_UTR | 25.0% |
| ! | AAATGCTCATGTTTATGTAA+TGG | + | chr1_3:64250675-64250694 | None:intergenic | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr1_3:64250744-64250763 | Msa0133000:three_prime_UTR | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr1_3:64250979-64250998 | Msa0133000:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr1_3:64250980-64250999 | Msa0133000:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr1_3:64251066-64251085 | Msa0133000:CDS | 25.0% |
| ! | ACCGATATTTATTGTTTGTT+CGG | + | chr1_3:64251070-64251089 | None:intergenic | 25.0% |
| ! | AACAATAAATATCGGTCATT+AGG | - | chr1_3:64251074-64251093 | Msa0133000:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr1_3:64251139-64251158 | Msa0133000:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr1_3:64251241-64251260 | Msa0133000:CDS | 25.0% |
| ! | TTTCTATTTACACAACACAA+TGG | - | chr1_3:64251460-64251479 | Msa0133000:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr1_3:64251501-64251520 | Msa0133000:CDS | 25.0% |
| !! | TCAATTTCGAATGTTTTTCA+AGG | - | chr1_3:64251710-64251729 | Msa0133000:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr1_3:64251811-64251830 | Msa0133000:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr1_3:64251885-64251904 | Msa0133000:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr1_3:64252078-64252097 | Msa0133000:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr1_3:64252217-64252236 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr1_3:64252252-64252271 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr1_3:64252252-64252271 | Msa0133000:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr1_3:64252353-64252372 | Msa0133000:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr1_3:64252354-64252373 | Msa0133000:CDS | 25.0% |
| ! | AATTATGATCTTCAAACCTT+GGG | + | chr1_3:64252426-64252445 | None:intergenic | 25.0% |
| !!! | ATCATAATTGACTTGATGAA+AGG | - | chr1_3:64252437-64252456 | Msa0133000:CDS | 25.0% |
| !!! | TCATAATTGACTTGATGAAA+GGG | - | chr1_3:64252438-64252457 | Msa0133000:CDS | 25.0% |
| !!! | GTGTTTGTTGTTGTTTTCAA+TGG | - | chr1_3:64250194-64250213 | Msa0133000:three_prime_UTR | 30.0% |
| CCATGATTCTTTATCACTAA+AGG | + | chr1_3:64250301-64250320 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr1_3:64250298-64250317 | Msa0133000:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr1_3:64250308-64250327 | Msa0133000:three_prime_UTR | 30.0% | |
| !!! | CTTATTTTGTGAGTTGTTCT+TGG | + | chr1_3:64250418-64250437 | None:intergenic | 30.0% |
| TGTTATGCTTGTAACAAAGA+AGG | - | chr1_3:64250462-64250481 | Msa0133000:three_prime_UTR | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr1_3:64250473-64250492 | Msa0133000:three_prime_UTR | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr1_3:64250474-64250493 | Msa0133000:three_prime_UTR | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr1_3:64250563-64250582 | Msa0133000:three_prime_UTR | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr1_3:64250596-64250615 | Msa0133000:three_prime_UTR | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr1_3:64250777-64250796 | Msa0133000:three_prime_UTR | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr1_3:64250821-64250840 | Msa0133000:three_prime_UTR | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr1_3:64250831-64250850 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr1_3:64250945-64250964 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr1_3:64251017-64251036 | Msa0133000:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr1_3:64251153-64251172 | Msa0133000:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr1_3:64251178-64251197 | Msa0133000:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr1_3:64251312-64251331 | None:intergenic | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr1_3:64251546-64251565 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr1_3:64251660-64251679 | None:intergenic | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr1_3:64251722-64251741 | Msa0133000:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr1_3:64251767-64251786 | Msa0133000:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr1_3:64251852-64251871 | Msa0133000:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr1_3:64251853-64251872 | Msa0133000:intron | 30.0% | |
| TTCATTCAAATCGTATGCAT+TGG | - | chr1_3:64251939-64251958 | Msa0133000:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr1_3:64252063-64252082 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr1_3:64252197-64252216 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr1_3:64252257-64252276 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr1_3:64252255-64252274 | Msa0133000:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr1_3:64252312-64252331 | Msa0133000:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr1_3:64252425-64252444 | None:intergenic | 30.0% | |
| CAATTATGATCTTCAAACCT+TGG | + | chr1_3:64252427-64252446 | None:intergenic | 30.0% | |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr1_3:64252534-64252553 | Msa0133000:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr1_3:64252537-64252556 | Msa0133000:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr1_3:64252602-64252621 | Msa0133000:CDS | 30.0% |
| AGAAATATTTCAGATGTCTC+CGG | + | chr1_3:64252766-64252785 | None:intergenic | 30.0% | |
| !! | ACTTCTTTTGAAGACTTAGA+AGG | + | chr1_3:64252871-64252890 | None:intergenic | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr1_3:64252925-64252944 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr1_3:64252932-64252951 | Msa0133000:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr1_3:64252943-64252962 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr1_3:64253041-64253060 | Msa0133000:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr1_3:64253085-64253104 | Msa0133000:CDS | 30.0% | |
| ! | ATGAGGCTTTAACTAAAAAG+CGG | - | chr1_3:64253102-64253121 | Msa0133000:CDS | 30.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr1_3:64250379-64250398 | Msa0133000:three_prime_UTR | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr1_3:64250499-64250518 | Msa0133000:three_prime_UTR | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr1_3:64250540-64250559 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr1_3:64250557-64250576 | Msa0133000:three_prime_UTR | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr1_3:64250562-64250581 | Msa0133000:three_prime_UTR | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr1_3:64250714-64250733 | Msa0133000:three_prime_UTR | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr1_3:64250776-64250795 | Msa0133000:three_prime_UTR | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr1_3:64250857-64250876 | Msa0133000:three_prime_UTR | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr1_3:64251159-64251178 | Msa0133000:CDS | 35.0% |
| TGTACAGAGCACAAATTCTA+AGG | + | chr1_3:64251288-64251307 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr1_3:64251563-64251582 | Msa0133000:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr1_3:64251606-64251625 | Msa0133000:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr1_3:64251735-64251754 | Msa0133000:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr1_3:64251895-64251914 | Msa0133000:intron | 35.0% |
| ! | GTCAAATTTTACAGCTGGTT+TGG | - | chr1_3:64251979-64251998 | Msa0133000:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr1_3:64252022-64252041 | Msa0133000:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr1_3:64252092-64252111 | Msa0133000:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr1_3:64252093-64252112 | Msa0133000:intron | 35.0% | |
| ! | GAGGGATAATCATGTTGATT+TGG | - | chr1_3:64252111-64252130 | Msa0133000:intron | 35.0% |
| !! | TCATGTTGATTTGGACTTCA+AGG | - | chr1_3:64252120-64252139 | Msa0133000:intron | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr1_3:64252375-64252394 | Msa0133000:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr1_3:64252544-64252563 | Msa0133000:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr1_3:64252604-64252623 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr1_3:64252605-64252624 | Msa0133000:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | - | chr1_3:64252658-64252677 | Msa0133000:CDS | 35.0% | |
| ATTTCTCAACAGTGTTCTTG+AGG | - | chr1_3:64252780-64252799 | Msa0133000:CDS | 35.0% | |
| GAGGAGTTTCTTCTTTCTAA+AGG | - | chr1_3:64252817-64252836 | Msa0133000:CDS | 35.0% | |
| GACAGAAATTCCTTATAGCT+CGG | - | chr1_3:64252998-64253017 | Msa0133000:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr1_3:64253023-64253042 | Msa0133000:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | - | chr1_3:64253042-64253061 | Msa0133000:CDS | 35.0% |
| ATACCAACTTCATCTGAGAG+TGG | - | chr1_3:64250222-64250241 | Msa0133000:three_prime_UTR | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr1_3:64250233-64250252 | Msa0133000:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr1_3:64250513-64250532 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr1_3:64250783-64250802 | Msa0133000:three_prime_UTR | 40.0% |
| TGTCTTCTGCAACATCAACT+TGG | + | chr1_3:64250965-64250984 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr1_3:64250987-64251006 | Msa0133000:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr1_3:64251406-64251425 | Msa0133000:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr1_3:64251410-64251429 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr1_3:64251530-64251549 | Msa0133000:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr1_3:64251671-64251690 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr1_3:64251670-64251689 | Msa0133000:CDS | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr1_3:64251952-64251971 | Msa0133000:intron | 40.0% |
| ! | GTGAGGTCAAATTTTACAGC+TGG | - | chr1_3:64251974-64251993 | Msa0133000:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr1_3:64252058-64252077 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr1_3:64252268-64252287 | Msa0133000:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr1_3:64252269-64252288 | Msa0133000:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr1_3:64252407-64252426 | Msa0133000:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr1_3:64252500-64252519 | Msa0133000:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr1_3:64252501-64252520 | Msa0133000:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr1_3:64252547-64252566 | Msa0133000:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr1_3:64252646-64252665 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr1_3:64252671-64252690 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr1_3:64252695-64252714 | None:intergenic | 40.0% | |
| TTGTCTGTGAACCATCTGTT+GGG | - | chr1_3:64252893-64252912 | Msa0133000:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr1_3:64252949-64252968 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr1_3:64253011-64253030 | None:intergenic | 40.0% | |
| TGTCCACTCTCAGATGAAGT+TGG | + | chr1_3:64250228-64250247 | None:intergenic | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr1_3:64250525-64250544 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr1_3:64250567-64250586 | Msa0133000:three_prime_UTR | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr1_3:64250576-64250595 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr1_3:64250579-64250598 | Msa0133000:three_prime_UTR | 45.0% |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr1_3:64250863-64250882 | Msa0133000:three_prime_UTR | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr1_3:64250866-64250885 | Msa0133000:three_prime_UTR | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr1_3:64250924-64250943 | Msa0133000:exon | 45.0% | |
| !! | CAGAGCACAAATTCTAAGGC+AGG | + | chr1_3:64251284-64251303 | None:intergenic | 45.0% |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr1_3:64251292-64251311 | Msa0133000:CDS | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr1_3:64251911-64251930 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr1_3:64251951-64251970 | Msa0133000:intron | 45.0% |
| ACTTCAAGGCTGCAAACACT+AGG | - | chr1_3:64252134-64252153 | Msa0133000:intron | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr1_3:64252170-64252189 | Msa0133000:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr1_3:64252420-64252439 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr1_3:64252502-64252521 | Msa0133000:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr1_3:64252522-64252541 | None:intergenic | 45.0% | |
| TCAACAGTGTTCTTGAGGCA+GGG | - | chr1_3:64252785-64252804 | Msa0133000:CDS | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr1_3:64252792-64252811 | Msa0133000:CDS | 45.0% | |
| GTTGTCTGTGAACCATCTGT+TGG | - | chr1_3:64252892-64252911 | Msa0133000:CDS | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr1_3:64250789-64250808 | Msa0133000:three_prime_UTR | 50.0% |
| !! | CGTCAAAAGGAGATGGTGGA+TGG | - | chr1_3:64250870-64250889 | Msa0133000:three_prime_UTR | 50.0% |
| ACCATATACACAGACCAGGC+TGG | - | chr1_3:64251674-64251693 | Msa0133000:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr1_3:64251678-64251697 | None:intergenic | 50.0% | |
| ACTTCAACAACTCACCAGCC+TGG | + | chr1_3:64251691-64251710 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr1_3:64251742-64251761 | Msa0133000:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr1_3:64251743-64251762 | Msa0133000:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr1_3:64251906-64251925 | Msa0133000:intron | 50.0% | |
| !! | ATTGGTCTTCAGCTTGGGTG+AGG | - | chr1_3:64251957-64251976 | Msa0133000:intron | 50.0% |
| GACCGCATAAGCTGACTGTT+GGG | + | chr1_3:64252175-64252194 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr1_3:64252458-64252477 | Msa0133000:CDS | 50.0% | |
| CGCAAACACGTGTAGAAAGC+TGG | + | chr1_3:64252738-64252757 | None:intergenic | 50.0% | |
| GCTTTCTACACGTGTTTGCG+CGG | - | chr1_3:64252738-64252757 | Msa0133000:CDS | 50.0% | |
| CTCAACAGTGTTCTTGAGGC+AGG | - | chr1_3:64252784-64252803 | Msa0133000:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr1_3:64252907-64252926 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr1_3:64250792-64250811 | Msa0133000:three_prime_UTR | 55.0% |
| GGACCGCATAAGCTGACTGT+TGG | + | chr1_3:64252176-64252195 | None:intergenic | 55.0% | |
| TACACGTGTTTGCGCGGATC+CGG | - | chr1_3:64252744-64252763 | Msa0133000:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr1_3:64252798-64252817 | Msa0133000:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr1_3:64250797-64250816 | Msa0133000:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 64250165 | 64253210 | 64250165 | ID=Msa0133000;Name=Msa0133000 |
| chr1_3 | mRNA | 64250165 | 64253210 | 64250165 | ID=Msa0133000-mRNA-1;Parent=Msa0133000;Name=Msa0133000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=48|1|1|1|1|1|2|763|596 |
| chr1_3 | exon | 64250165 | 64251835 | 64250165 | ID=Msa0133000-mRNA-1:exon:21555;Parent=Msa0133000-mRNA-1 |
| chr1_3 | exon | 64252280 | 64253210 | 64252280 | ID=Msa0133000-mRNA-1:exon:21554;Parent=Msa0133000-mRNA-1 |
| chr1_3 | five_prime_UTR | 64253163 | 64253210 | 64253163 | ID=Msa0133000-mRNA-1:five_prime_utr;Parent=Msa0133000-mRNA-1 |
| chr1_3 | CDS | 64252280 | 64253162 | 64252280 | ID=Msa0133000-mRNA-1:cds;Parent=Msa0133000-mRNA-1 |
| chr1_3 | CDS | 64250928 | 64251835 | 64250928 | ID=Msa0133000-mRNA-1:cds;Parent=Msa0133000-mRNA-1 |
| chr1_3 | three_prime_UTR | 64250165 | 64250927 | 64250165 | ID=Msa0133000-mRNA-1:three_prime_utr;Parent=Msa0133000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
