AlfalfaGEDB | Msa0133770

M. sativa cultivar zhongmu-4 / Msa0133770

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0133770	XP_013469680.1	92.459	305	13	1	1	305	1	295	0.0	583

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0133770	sp\|Q9M2D9\|MYB17_ARATH	51.815	303	107	8	1	290	1	277	3.62e-89	271

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0133770	A0A072VQK4	92.459	305	13	1	1	305	1	295	0.0	583

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TFs/TRs:

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Gene ID	Type	Classification
Msa0133770	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0133770	MtrunA17_Chr1g0203411	92.459	305	13	1	1	305	1	295	0.0	583
Msa0133770	MtrunA17_Chr8g0349261	47.022	319	117	10	1	290	1	296	8.72e-88	264
Msa0133770	MtrunA17_Chr7g0217741	60.000	185	62	3	1	174	1	184	8.46e-73	226
Msa0133770	MtrunA17_Chr6g0453471	63.158	171	55	3	1	163	1	171	6.26e-71	223
Msa0133770	MtrunA17_Chr4g0042671	61.047	172	59	1	1	164	1	172	2.21e-68	218
Msa0133770	MtrunA17_Chr7g0247131	48.529	272	101	8	44	293	10	264	6.14e-68	213
Msa0133770	MtrunA17_Chr1g0187761	76.471	119	28	0	1	119	1	119	4.61e-66	207
Msa0133770	MtrunA17_Chr1g0167691	77.586	116	26	0	1	116	1	116	5.28e-66	207
Msa0133770	MtrunA17_Chr4g0039971	74.576	118	30	0	1	118	2	119	2.84e-64	206
Msa0133770	MtrunA17_Chr1g0167661	62.914	151	45	1	1	140	1	151	1.97e-63	201

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0133770	AT3G61250.1	51.815	303	107	8	1	290	1	277	3.68e-90	271
Msa0133770	AT3G01140.2	63.529	170	56	1	1	164	1	170	1.15e-73	230
Msa0133770	AT5G15310.1	61.988	171	59	1	1	165	1	171	3.48e-71	223
Msa0133770	AT5G15310.2	61.988	171	59	1	1	165	1	171	3.63e-71	223
Msa0133770	AT3G01140.1	62.941	170	57	1	1	164	44	213	4.17e-71	225
Msa0133770	AT5G15310.4	61.988	171	59	1	1	165	1	171	4.19e-71	220
Msa0133770	AT2G31180.1	75.833	120	29	0	1	120	1	120	1.60e-66	209
Msa0133770	AT4G05100.1	74.359	117	29	1	1	116	1	117	1.50e-64	206
Msa0133770	AT4G21440.1	73.276	116	31	0	1	116	1	116	7.02e-64	205
Msa0133770	AT3G23250.1	75.000	116	29	0	1	116	1	116	8.58e-64	203

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Find 78 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCTTGCACTTTCCCACT+GGG	0.410798	1_3:+65097721	None:intergenic
AACGTGTCCGGCAGTCACTA+AGG	0.458737	1_3:-65097811	Msa0133770:CDS
AAGCTTCAGTTTGTAGTTAC+TGG	0.214754	1_3:+65097409	None:intergenic
AAGCTTGAAGATGATAGATC+TGG	0.524702	1_3:-65097392	Msa0133770:CDS
AATGAGCCACGCTTGATGCC+AGG	0.516151	1_3:+65098114	None:intergenic
AATTTCTTGAATCTCCTTGA+TGG	0.383750	1_3:-65097269	Msa0133770:CDS
ACAAACATGGCCATGGGAGT+TGG	0.494826	1_3:-65099310	Msa0133770:CDS
ACAATGAGATTAAGAACTAT+TGG	0.389201	1_3:-65097850	Msa0133770:CDS
ACATCAACAAACATGGCCAT+GGG	0.633448	1_3:-65099316	Msa0133770:CDS
ACCCCATGTTTCTCACAACA+AGG	0.549162	1_3:+65099386	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATAAGCTTACTACTTTGA+AGG	-	chr1_3:65097826-65097845	Msa0133770:CDS	30.0%
TGTGAAATGTATAACAGTTG+AGG	-	chr1_3:65098121-65098140	Msa0133770:CDS	30.0%
GGACAATTGCAACAAATTTA+AGG	+	chr1_3:65098245-65098264	None:intergenic	30.0%
AATCTTGTCTTAAATAGACC+CGG	-	chr1_3:65098284-65098303	Msa0133770:intron	30.0%
ATGTTAACTCTTTGCATACA+TGG	+	chr1_3:65098484-65098503	None:intergenic	30.0%
CAGTGTCAAGAAAAATTTGT+TGG	-	chr1_3:65098785-65098804	Msa0133770:intron	30.0%
GATAACTATGCTATCTTTCT+AGG	-	chr1_3:65098834-65098853	Msa0133770:intron	30.0%
CAAAGTTGAAGAAAGTAATC+AGG	+	chr1_3:65099115-65099134	None:intergenic	30.0%
CTGATTACTTTCTTCAACTT+TGG	-	chr1_3:65099113-65099132	Msa0133770:intron	30.0%
ATCACTATCATCATCGAAAT+TGG	-	chr1_3:65099207-65099226	Msa0133770:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	65097259	65099507	65097259	ID=Msa0133770;Name=Msa0133770
chr1_3	mRNA	65097259	65099507	65097259	ID=Msa0133770-mRNA-1;Parent=Msa0133770;Name=Msa0133770-mRNA-1;_AED=0.39;_eAED=0.39;_QI=87\|1\|1\|1\|1\|1\|3\|0\|305
chr1_3	exon	65097259	65097910	65097259	ID=Msa0133770-mRNA-1:exon:22121;Parent=Msa0133770-mRNA-1
chr1_3	exon	65098060	65098189	65098060	ID=Msa0133770-mRNA-1:exon:22120;Parent=Msa0133770-mRNA-1
chr1_3	exon	65099288	65099507	65099288	ID=Msa0133770-mRNA-1:exon:22119;Parent=Msa0133770-mRNA-1
chr1_3	five_prime_UTR	65099421	65099507	65099421	ID=Msa0133770-mRNA-1:five_prime_utr;Parent=Msa0133770-mRNA-1
chr1_3	CDS	65099288	65099420	65099288	ID=Msa0133770-mRNA-1:cds;Parent=Msa0133770-mRNA-1
chr1_3	CDS	65098060	65098189	65098060	ID=Msa0133770-mRNA-1:cds;Parent=Msa0133770-mRNA-1
chr1_3	CDS	65097259	65097910	65097259	ID=Msa0133770-mRNA-1:cds;Parent=Msa0133770-mRNA-1

Gene Sequence

>Msa0133770

ATGGGTAAAGCCCCTTGTTGTGAGAAACATGGGGTGAAAAGAGGAGCTTGGACTCCTGAAGAAGATGAAGCTTTAGTTGACTACATCAACAAACATGGCCATGGGAGTTGGCGTACTCTTCCTAAACATGCAGGTCTCCTAAGATGCGGCAAAAGTTGCCGGCTTCGGTGGATAAACTATCTCCGTCCTGGCATCAAGCGTGGCTCATTTACTAATGAAGAAGAAACTACTATTATTCAACTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCAGCTCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATTTAAAGAAACGTGTCCGGCAGTCACTAAGGGAAAAACATCCATGTCTCCTTCCTGATAGGAATGCCCAGTCTAATTCTCCTTCTACACGCCACATGGCCCAGTGGGAAAGTGCAAGGGTTGAAGCAGAGACGAGGCTGTCGTTGGAGTCCACTTTGCTTAATTCAGGCTCTACGACTAAAACATATCCTGATTACTTTCTTCAACTTTGGCATTCTGATGTTGGAGAGAAATTTCGAGCAGGAGTAGTGTGTCAAAGCATTGTCTCACAAGCATCATCATCATCACTATCATCATCGAAATTGGAGTCATGTTCAGATGTCTCATTGCAGGTGAAAAACAACGAAACACAAAGCCTGAAAGTGTCGACACCAAAGCTTGAAGATGTTGACGTGATTCAGGAACAAAAAGCCAGTAACTACAAACTGAAGCTTGAAGATGATAGATCTGGTTCAGATTCAGGAAATTATGAGTTTCTTGATACTTCTGATTCTGCACTGAAGCACCTACTGCGTATGCCTGATGAAATAGGATTCCTGGGACATACTGACAATTTCTTGAATCTCCTTGATGGTAGATGTGAC

Protein sequence

>Msa0133770

MGKAPCCEKHGVKRGAWTPEEDEALVDYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGSFTNEEETTIIQLHAMLGNRWAAIAAQLPGRTDNEIKNYWNTHLKKRVRQSLREKHPCLLPDRNAQSNSPSTRHMAQWESARVEAETRLSLESTLLNSGSTTKTYPDYFLQLWHSDVGEKFRAGVVCQSIVSQASSSSLSSSKLESCSDVSLQVKNNETQSLKVSTPKLEDVDVIQEQKASNYKLKLEDDRSGSDSGNYEFLDTSDSALKHLLRMPDEIGFLGHTDNFLNLLDGRCD