AlfalfaGEDB | Msa0134670

M. sativa cultivar zhongmu-4 / Msa0134670

KEGG: K21776
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048509 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF03638.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134670	XP_024630895.1	87.993	558	56	3	1	557	1	548	0.0	998

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134670	sp\|F4JIF5\|TCX2_ARATH	29.152	566	296	24	9	543	13	504	2.26e-40	159

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134670	A0A396K8E7	87.993	558	56	3	1	557	1	548	0.0	996

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TFs/TRs:

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Gene ID	Type	Classification
Msa0134670	TF	CPP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134670	MtrunA17_Chr1g0205031	87.993	558	56	3	1	557	1	548	0.0	996
Msa0134670	MtrunA17_Chr5g0394661	34.652	632	272	17	16	543	23	617	7.14e-80	266
Msa0134670	MtrunA17_Chr1g0205021	40.196	306	79	8	16	294	2	230	6.21e-49	170
Msa0134670	MtrunA17_Chr1g0205011	51.389	216	69	6	235	429	4	204	5.76e-45	158
Msa0134670	MtrunA17_Chr1g0149101	37.415	147	88	4	415	558	500	645	9.91e-24	105
Msa0134670	MtrunA17_Chr8g0390351	37.594	133	73	4	415	543	85	211	1.26e-17	86.3
Msa0134670	MtrunA17_Chr6g0485811	39.516	124	65	4	424	543	139	256	2.08e-17	85.9
Msa0134670	MtrunA17_Chr1g0205001	40.132	152	71	7	189	327	18	162	6.52e-15	74.3
Msa0134670	MtrunA17_Chr1g0205001	73.810	42	11	0	15	56	61	102	1.01e-13	70.9
Msa0134670	MtrunA17_Chr1g0205001	58.491	53	22	0	408	460	168	220	2.44e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134670	AT4G14770.1	29.152	566	296	24	9	543	13	504	2.30e-41	159
Msa0134670	AT4G14770.3	28.853	558	293	23	16	543	2	485	6.96e-41	157
Msa0134670	AT4G14770.2	28.905	557	292	23	17	543	2	484	1.15e-40	156
Msa0134670	AT3G22760.1	27.486	553	284	17	16	555	21	469	1.31e-40	156
Msa0134670	AT3G22760.2	31.889	323	170	7	233	555	74	346	5.83e-39	149
Msa0134670	AT3G04850.1	33.101	287	135	9	266	537	332	576	1.11e-30	127
Msa0134670	AT5G25790.3	38.333	120	68	3	424	543	106	219	1.60e-17	85.9
Msa0134670	AT5G25790.2	35.833	120	75	2	424	543	106	223	1.13e-16	83.6
Msa0134670	AT5G25790.1	35.833	120	75	2	424	543	106	223	1.68e-16	82.8
Msa0134670	AT2G20110.3	38.583	127	68	4	415	537	121	241	1.25e-15	80.5

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Find 97 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGAAAAGGACGATGA+AGG	0.570624	1_3:-66197866	Msa0134670:CDS
AAAGGAACAACTCTGATGAG+AGG	0.637830	1_3:-66198242	Msa0134670:CDS
AAAGGACGATGAAGGTGCAT+AGG	0.604624	1_3:-66197858	Msa0134670:CDS
AAATCCTGAACTTTCATCTG+AGG	0.591883	1_3:-66199410	Msa0134670:CDS
AACAGACAGAAATCAAGCAC+AGG	0.530854	1_3:-66199020	Msa0134670:CDS
AAGCAGTCTTGACATGAGCA+AGG	0.654291	1_3:+66197182	None:intergenic
AAGTAATTCAAGAAGATACT+TGG	0.551163	1_3:+66199285	None:intergenic
AAGTATCTTCTTGAATTACT+TGG	0.428004	1_3:-66199283	Msa0134670:CDS
AAGTCATCAGTTCACATTCC+TGG	0.424450	1_3:-66197967	Msa0134670:CDS
AAGTTATTGTAATCACAATC+TGG	0.434332	1_3:+66199178	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCTCTATTATTCATTGCT+AGG	-	chr1_3:66197149-66197168	Msa0134670:CDS	30.0%
TTGAAGGTGGAACATTTATT+CGG	-	chr1_3:66197395-66197414	Msa0134670:intron	30.0%
TAACTATTACTGGTAGATTG+TGG	+	chr1_3:66197481-66197500	None:intergenic	30.0%
GATATCCATTAAAGCAACAT+TGG	+	chr1_3:66197617-66197636	None:intergenic	30.0%
CAGAATGGCATAAAAAATAC+AGG	+	chr1_3:66197795-66197814	None:intergenic	30.0%
TGGTCATATAAATATGCAGA+AGG	+	chr1_3:66197892-66197911	None:intergenic	30.0%
AATTGCAATTCTAACAGACA+TGG	+	chr1_3:66197912-66197931	None:intergenic	30.0%
TTGCAATTTAACACTGTTGT+TGG	-	chr1_3:66197924-66197943	Msa0134670:CDS	30.0%
CTTGGTTATATTGTATCTTG+TGG	-	chr1_3:66197953-66197972	Msa0134670:CDS	30.0%
CTGTACTTTCAAAGTAACAA+TGG	+	chr1_3:66197987-66198006	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	66196659	66199965	66196659	ID=Msa0134670;Name=Msa0134670
chr1_3	mRNA	66196659	66199965	66196659	ID=Msa0134670-mRNA-1;Parent=Msa0134670;Name=Msa0134670-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|1\|1\|1\|7\|0\|563
chr1_3	exon	66199918	66199965	66199918	ID=Msa0134670-mRNA-1:exon:22619;Parent=Msa0134670-mRNA-1
chr1_3	exon	66199539	66199699	66199539	ID=Msa0134670-mRNA-1:exon:22618;Parent=Msa0134670-mRNA-1
chr1_3	exon	66198961	66199453	66198961	ID=Msa0134670-mRNA-1:exon:22617;Parent=Msa0134670-mRNA-1
chr1_3	exon	66197760	66198331	66197760	ID=Msa0134670-mRNA-1:exon:22616;Parent=Msa0134670-mRNA-1
chr1_3	exon	66197064	66197244	66197064	ID=Msa0134670-mRNA-1:exon:22615;Parent=Msa0134670-mRNA-1
chr1_3	exon	66196881	66196979	66196881	ID=Msa0134670-mRNA-1:exon:22614;Parent=Msa0134670-mRNA-1
chr1_3	exon	66196659	66196796	66196659	ID=Msa0134670-mRNA-1:exon:22613;Parent=Msa0134670-mRNA-1
chr1_3	CDS	66199918	66199965	66199918	ID=Msa0134670-mRNA-1:cds;Parent=Msa0134670-mRNA-1
chr1_3	CDS	66199539	66199699	66199539	ID=Msa0134670-mRNA-1:cds;Parent=Msa0134670-mRNA-1
chr1_3	CDS	66198961	66199453	66198961	ID=Msa0134670-mRNA-1:cds;Parent=Msa0134670-mRNA-1
chr1_3	CDS	66197760	66198331	66197760	ID=Msa0134670-mRNA-1:cds;Parent=Msa0134670-mRNA-1
chr1_3	CDS	66197064	66197244	66197064	ID=Msa0134670-mRNA-1:cds;Parent=Msa0134670-mRNA-1
chr1_3	CDS	66196881	66196979	66196881	ID=Msa0134670-mRNA-1:cds;Parent=Msa0134670-mRNA-1
chr1_3	CDS	66196659	66196796	66196659	ID=Msa0134670-mRNA-1:cds;Parent=Msa0134670-mRNA-1

Gene Sequence

>Msa0134670

ATGGCGGCACTAGATCACAACAACACCCTTGTTTCCAACTCACAAGAGGATGATTCTTTCTTTGACTACCTCAATACTCTATCTCCTTTAAACACCAAAAAGTATGTTGGAGTTGGAGCTACTATGACGCTGAACTCACTTGGCATGGCTTATCCTCTTTTCACATCACTCGATGTGACCTTTAATGACGAGTCCATATTCCTCACGAGGAATAATCTTTTGTACACATCAAATCCTGAACTTTCATCTGAGGCTGTAAATAACACATATTCACATGAAGAAGCTCCTACAGATTCAACTCATGCATGGATTGACACAAGTCAGCTACATGATCCTCAAATCTCAAGTGATGATGCCAAGTATCTTCTTGAATTACTTGGCAAGCAAGAACCAGATGGTACGGATGTACAAGATGATTCTGTCACAGATGCAGTTGAAGGTGGAACATTTATTCGGGAAGGACCAGATTGTGATTACAATAACTTAATTAGTGCAACACAATCTGTGACCATGTTACCACAATCTACCAGTAATAGTTATTATAAAATGCAAACTGTTGACCCACTTGCTTTTGGTTCAAAACATGAAATTGAAGACAATCCTTCAGAACCAATAGCCGCAACAGACAGAAATCAAGCACAGGACAATCTTGCCAATGTTGCTTTAATGGATATCAATCAAATTAAGAGAGGGGATGATGAGCTTGCACGTATTAGACGCAGTATACAGATGAGCTGTCAAGGCTATGAGTCTGAGATGACCAGTATGCAAAGGAACAACTCTGATGAGAGGAATGCTATTAACAAAAACCCTAGTGATTCACAGAAGTGTGTTTTGCAAGGAAATGGTTTTTACTGGAATGCACTTCCAGCCTTAAATCATTACGAAGGCATAGAAAATGAAAAGATGTCTTCTCAAAGGAAACCTGAATCACCGAGCTGCACTTATTCTTTGAATATTTCTGTAAGTCAAGGGTATCAACCATCTCAAGTCTCTGCACCAATGGAGACACATTTACGGCTATCTGAGAATGAAGATGTCACCAAGTCATCAGTTCACATTCCTGGTGAAGATTTCTGTCAGAGTACTCCCAAAAGGACGAGTGAAGTGCAATTTAAGGACATAAAGAACAAAAAGTTAGATCAAAACATGAAAAGGACGATGAAGGTGCATAGGAAAGGCTCGATTGATCTAGTTTCTTCTGGTTCAGAACATGTAAAGGAAGAGGAAAGAGCTGATTTCTGTCAGAGTATCCGCAAAAGGAAGAGGAAAGTTAATTGTGGCTGCTTTGCTGCTGGAGTCTACTGCACAGGACCTTGCTCATGTCAAGACTGCTTGAATAAACATATTAATGAAGATACAGTTCTGCAAGCTCGCAGGATGATTGAGTATCGTAATCCACCTGCATTTGTTCCTAAAGTTCGAAAGAATTCTGGTTCCTCACCTCAAATTGTGGATGACCCCAACAAAGCTCCAGCTTCAAAGCGACAACGCAGAATACGATGCAAGTGCAGGAAATCAAGCTGCATGAATAAACGTTGTGAATGTTTTAAGGGTGGTGTTGCTTGTTCCCCAAGTTGTAAATGTGAAGGGTGCGAAAATATACATGGTAGGAAGGATAGTGCAGCTGAAACAAAATCTGAGCTTGAAGAAACAGAAGCATCACAGATAAAGCTACTAATTGGTATGTAA

Protein sequence

>Msa0134670

MAALDHNNTLVSNSQEDDSFFDYLNTLSPLNTKKYVGVGATMTLNSLGMAYPLFTSLDVTFNDESIFLTRNNLLYTSNPELSSEAVNNTYSHEEAPTDSTHAWIDTSQLHDPQISSDDAKYLLELLGKQEPDGTDVQDDSVTDAVEGGTFIREGPDCDYNNLISATQSVTMLPQSTSNSYYKMQTVDPLAFGSKHEIEDNPSEPIAATDRNQAQDNLANVALMDINQIKRGDDELARIRRSIQMSCQGYESEMTSMQRNNSDERNAINKNPSDSQKCVLQGNGFYWNALPALNHYEGIENEKMSSQRKPESPSCTYSLNISVSQGYQPSQVSAPMETHLRLSENEDVTKSSVHIPGEDFCQSTPKRTSEVQFKDIKNKKLDQNMKRTMKVHRKGSIDLVSSGSEHVKEEERADFCQSIRKRKRKVNCGCFAAGVYCTGPCSCQDCLNKHINEDTVLQARRMIEYRNPPAFVPKVRKNSGSSPQIVDDPNKAPASKRQRRIRCKCRKSSCMNKRCECFKGGVACSPSCKCEGCENIHGRKDSAAETKSELEETEASQIKLLIGM*