AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134740 MtrunA17_Chr1g0205131 97.257 401 5 4 1 399 1 397 0.0 796
Msa0134740 MtrunA17_Chr6g0456881 40.173 346 109 15 84 393 108 391 1.17e-47 167
Msa0134740 MtrunA17_Chr7g0220931 36.438 365 154 12 41 393 57 355 4.51e-39 143
Msa0134740 MtrunA17_Chr4g0062691 40.625 160 66 4 96 238 120 267 1.06e-20 92.8
Msa0134740 MtrunA17_Chr8g0376571 35.404 161 69 3 109 236 60 218 1.94e-17 84.0
Msa0134740 MtrunA17_Chr4g0040921 55.738 61 27 0 109 169 21 81 4.39e-17 81.6
Msa0134740 MtrunA17_Chr8g0360441 55.738 61 27 0 109 169 53 113 1.19e-16 81.3
Msa0134740 MtrunA17_Chr2g0316391 57.377 61 26 0 109 169 19 79 1.66e-16 79.3
Msa0134740 MtrunA17_Chr2g0325171 53.333 60 28 0 109 168 23 82 1.88e-16 79.7
Msa0134740 MtrunA17_Chr4g0061561 37.037 108 67 1 109 216 56 162 1.97e-13 70.5
Msa0134740 MtrunA17_Chr6g0454781 51.667 60 29 0 109 168 48 107 2.35e-13 70.5
Msa0134740 MtrunA17_Chr7g0219461 44.444 81 45 0 109 189 56 136 1.41e-12 68.6
Msa0134740 MtrunA17_Chr3g0086961 48.333 60 31 0 109 168 56 115 1.61e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134740 AT1G67260.2 42.690 171 67 5 110 253 87 253 6.55e-27 110
Msa0134740 AT1G67260.3 42.690 171 67 5 110 253 87 253 6.55e-27 110
Msa0134740 AT1G67260.1 42.690 171 67 5 110 253 87 253 8.86e-27 110
Msa0134740 AT1G68800.2 68.182 66 21 0 110 175 112 177 3.30e-21 94.4
Msa0134740 AT1G68800.1 68.182 66 21 0 110 175 112 177 3.32e-21 94.4
Msa0134740 AT3G18550.2 30.043 233 104 8 61 235 66 297 1.36e-18 87.4
Msa0134740 AT3G18550.3 31.034 232 101 8 61 234 66 296 2.37e-18 87.0
Msa0134740 AT4G18390.1 39.850 133 68 2 109 236 41 166 2.61e-18 86.3
Msa0134740 AT4G18390.2 39.850 133 68 2 109 236 41 166 2.61e-18 86.3
Msa0134740 AT3G18550.1 29.958 237 103 9 61 235 66 301 3.45e-18 86.3
Msa0134740 AT3G18550.4 29.958 237 103 9 61 235 66 301 3.45e-18 86.3
Msa0134740 AT1G30210.2 42.188 128 57 3 109 236 49 159 1.67e-17 83.2
Msa0134740 AT1G30210.1 42.188 128 57 3 109 236 49 159 1.67e-17 83.2
Msa0134740 AT1G53230.1 56.452 62 27 0 109 170 48 109 5.22e-17 82.4
Msa0134740 AT1G53230.2 56.452 62 27 0 109 170 48 109 5.22e-17 82.4
Msa0134740 AT3G15030.2 57.377 61 26 0 109 169 44 104 8.46e-17 82.0
Msa0134740 AT3G15030.4 57.377 61 26 0 109 169 44 104 8.46e-17 82.0
Msa0134740 AT3G15030.3 57.377 61 26 0 109 169 44 104 8.46e-17 82.0
Msa0134740 AT3G15030.1 57.377 61 26 0 109 169 44 104 8.46e-17 82.0
Msa0134740 AT2G31070.1 56.667 60 26 0 109 168 28 87 2.44e-16 80.1
Msa0134740 AT3G02150.1 51.667 60 29 0 109 168 73 132 1.79e-12 67.8
Msa0134740 AT3G02150.2 51.667 60 29 0 109 168 73 132 2.38e-12 68.2
Msa0134740 AT5G60970.1 46.667 60 32 0 109 168 62 121 1.97e-11 65.5

Find 73 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTGTCACAACAAAATT+TGG 0.083599 1_3:+66307158 None:intergenic
GATGAAGAAGGGAAATTATT+AGG 0.158390 1_3:+66307422 None:intergenic
TCCCTTGTTCAACTCCAAAT+TGG 0.198049 1_3:-66306326 Msa0134740:CDS
CCTTAGGGATAGTAGGAATT+AGG 0.215420 1_3:+66306397 None:intergenic
AGGAATCCATTATGATTAAA+AGG 0.231280 1_3:-66306461 Msa0134740:CDS
TGGAGTTGAACAAGGGAATA+AGG 0.272402 1_3:+66306332 None:intergenic
TTGGAGCTAGTCTCCCAATT+TGG 0.297661 1_3:+66306312 None:intergenic
AAGAAGAGTAGTATTGTTAT+TGG 0.300314 1_3:+66307331 None:intergenic
TTGAAACTTGGTAATTCCTT+AGG 0.318513 1_3:+66306381 None:intergenic
TCATAATCATCATAACCTAT+TGG 0.320855 1_3:-66306526 Msa0134740:CDS
GGATAGTAGGAATTAGGTTT+TGG 0.326225 1_3:+66306403 None:intergenic
AAACAACCAGCAGCAGTTAT+AGG 0.340022 1_3:-66307134 Msa0134740:CDS
TCTTCTTCTTCTTACCCTAA+TGG 0.344713 1_3:-66307398 Msa0134740:CDS
GAATGCAACAAGAAGAAATT+AGG 0.347577 1_3:-66306704 Msa0134740:CDS
AGAAAAGAAAGGGTACCATT+AGG 0.370855 1_3:+66307383 None:intergenic
CAAGATAATGGCTACAACTT+TGG 0.372622 1_3:-66307203 Msa0134740:CDS
AGAAGAGTAGTATTGTTATT+GGG 0.374456 1_3:+66307332 None:intergenic
ATGAAGAAGGGAAATTATTA+GGG 0.385216 1_3:+66307423 None:intergenic
CCCTTGTTCAACTCCAAATT+GGG 0.387307 1_3:-66306325 Msa0134740:CDS
GCAATGTTTGAACAAGATAA+TGG 0.390494 1_3:-66307215 Msa0134740:CDS
TAGGTATTTCACTATCCAAT+AGG 0.395659 1_3:+66306511 None:intergenic
GAAAAGAAAGGGTACCATTA+GGG 0.408079 1_3:+66307384 None:intergenic
TTTCCTCCTATAACTGCTGC+TGG 0.420270 1_3:+66307128 None:intergenic
AAAAGAAGGGTTACTACTAT+AGG 0.421997 1_3:+66306548 None:intergenic
GGTAATTCCTTAGGGATAGT+AGG 0.423994 1_3:+66306390 None:intergenic
GTTGAATCTGCACCAGGTCC+AGG 0.426040 1_3:+66306678 None:intergenic
CAATCTGCAAAATTAGCATC+AGG 0.430784 1_3:+66307248 None:intergenic
TTATAGGAGGAAAGAAAGAT+AGG 0.430839 1_3:-66307118 Msa0134740:CDS
TTAATATTGTGGTTGAAACT+TGG 0.430928 1_3:+66306369 None:intergenic
CTAAAGGGAGAAAATTGAAA+TGG 0.439828 1_3:-66306818 Msa0134740:CDS
ATGGTAGTTGTTCTTCTAAA+GGG 0.441018 1_3:-66306833 Msa0134740:CDS
GAAGAAGAAGATGATGAAGA+AGG 0.449349 1_3:+66307410 None:intergenic
AATCATTATTATTAATATTG+TGG 0.455465 1_3:+66306358 None:intergenic
TGAAACTTGGTAATTCCTTA+GGG 0.456765 1_3:+66306382 None:intergenic
TCCGGCGGTGGTGGCGGCGA+TGG 0.458548 1_3:-66306852 Msa0134740:CDS
GATGGTAGTTGTTCTTCTAA+AGG 0.462971 1_3:-66306834 Msa0134740:CDS
GTCACAACAAAATTTGGAAT+CGG 0.465229 1_3:+66307164 None:intergenic
TTATGATGATTATGAAAAGA+AGG 0.467263 1_3:+66306534 None:intergenic
AAGAAGAAGATGATGAAGAA+GGG 0.472483 1_3:+66307411 None:intergenic
AGTGGCTATTCCACAAAAGT+TGG 0.483262 1_3:+66306293 None:intergenic
TCAGTTTCAGTACTATCAAC+AGG 0.489731 1_3:+66306609 None:intergenic
AGCCACTCAAGTGTGTTGCT+TGG 0.498484 1_3:+66306987 None:intergenic
ACCATCGCCGCCACCACCGC+CGG 0.517778 1_3:+66306851 None:intergenic
ATTGTCAATGAGAAAAGAAA+GGG 0.521480 1_3:+66307373 None:intergenic
TATGATGATTATGAAAAGAA+GGG 0.526879 1_3:+66306535 None:intergenic
GATTGTCAATGAGAAAAGAA+AGG 0.527029 1_3:+66307372 None:intergenic
AGTGAAATACCTAGAGATCA+TGG 0.535750 1_3:-66306501 Msa0134740:CDS
TTAAATCCACCATGATCTCT+AGG 0.537094 1_3:+66306492 None:intergenic
GTATTTGTTGAATCTGCACC+AGG 0.542255 1_3:+66306672 None:intergenic
TGGTGGATTTAATGTGATTG+AGG 0.542326 1_3:-66306481 Msa0134740:CDS
CCTAATTCCTACTATCCCTA+AGG 0.544884 1_3:-66306397 Msa0134740:CDS
TCCCAATTTGGAGTTGAACA+AGG 0.545085 1_3:+66306324 None:intergenic
CAAGAGCAAGAGCTAGAGAA+AGG 0.553192 1_3:-66306755 Msa0134740:CDS
GCAAAATTAGCATCAGGGAA+TGG 0.555133 1_3:+66307254 None:intergenic
CAGTAAGATTCACACATCAC+AGG 0.558791 1_3:-66307093 Msa0134740:CDS
GAAATTAGGTACCCTGGACC+TGG 0.562470 1_3:-66306690 Msa0134740:CDS
TTGAATCTGCACCAGGTCCA+GGG 0.571969 1_3:+66306679 None:intergenic
CTACATGCTTCTTGAATCCG+TGG 0.574833 1_3:-66306260 Msa0134740:CDS
CAAGAAGAAATTAGGTACCC+TGG 0.600461 1_3:-66306696 Msa0134740:CDS
AAACTGAGGCTTATGCAAGA+TGG 0.603501 1_3:-66306593 Msa0134740:CDS
TGTTGATAGTACTGAAACTG+AGG 0.605008 1_3:-66306607 Msa0134740:CDS
CCCAATTTGGAGTTGAACAA+GGG 0.612112 1_3:+66306325 None:intergenic
CACAGGGTTTGAGAGACAGA+AGG 0.612414 1_3:-66307076 Msa0134740:CDS
ACTTAGTTAATTACTTACCA+CGG 0.614778 1_3:+66306243 None:intergenic
CAACCAGCAGCAGTTATAGG+AGG 0.626000 1_3:-66307131 Msa0134740:CDS
AATCTGCAAAATTAGCATCA+GGG 0.626917 1_3:+66307249 None:intergenic
TGTTACAAGATGTGTAGCAG+TGG 0.627912 1_3:-66306729 Msa0134740:CDS
ACAGGGTTTGAGAGACAGAA+GGG 0.629239 1_3:-66307075 Msa0134740:CDS
GCATGTAGATAGATTCATAG+TGG 0.634816 1_3:+66306275 None:intergenic
AACCAAGCAACACACTTGAG+TGG 0.646336 1_3:-66306989 Msa0134740:CDS
AGTAAGATTCACACATCACA+GGG 0.651645 1_3:-66307092 Msa0134740:CDS
TGATGTGTTGATGTAGTGAA+AGG 0.657369 1_3:+66307287 None:intergenic
GAAATACCTAGAGATCATGG+TGG 0.750657 1_3:-66306498 Msa0134740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATTATTATTAATATTG+TGG + chr1_3:66307336-66307355 None:intergenic 10.0%
!! AATCATTATTATTAATATTG+TGG + chr1_3:66307336-66307355 None:intergenic 10.0%
!!! TGCTATTTGAATCAAAAAAT+GGG + chr1_3:66306808-66306827 None:intergenic 20.0%
!!! TTGCTATTTGAATCAAAAAA+TGG + chr1_3:66306809-66306828 None:intergenic 20.0%
!! TATGATGATTATGAAAAGAA+GGG + chr1_3:66307159-66307178 None:intergenic 20.0%
!! TTATGATGATTATGAAAAGA+AGG + chr1_3:66307160-66307179 None:intergenic 20.0%
!!! TGCTATTTGAATCAAAAAAT+GGG + chr1_3:66306808-66306827 None:intergenic 20.0%
!!! TTGCTATTTGAATCAAAAAA+TGG + chr1_3:66306809-66306828 None:intergenic 20.0%
!! TATGATGATTATGAAAAGAA+GGG + chr1_3:66307159-66307178 None:intergenic 20.0%
!! TTATGATGATTATGAAAAGA+AGG + chr1_3:66307160-66307179 None:intergenic 20.0%
! ATGAAGAAGGGAAATTATTA+GGG + chr1_3:66306271-66306290 None:intergenic 25.0%
! ATTGTCAATGAGAAAAGAAA+GGG + chr1_3:66306321-66306340 None:intergenic 25.0%
!! TTGGGAAAATCATTATTTTC+AGG + chr1_3:66306344-66306363 None:intergenic 25.0%
!! AGAAGAGTAGTATTGTTATT+GGG + chr1_3:66306362-66306381 None:intergenic 25.0%
! AAGAAGAGTAGTATTGTTAT+TGG + chr1_3:66306363-66306382 None:intergenic 25.0%
!! AATAGCAACAAATCATTTTC+CGG - chr1_3:66306821-66306840 Msa0134740:CDS 25.0%
! TCATAATCATCATAACCTAT+TGG - chr1_3:66307165-66307184 Msa0134740:CDS 25.0%
! AGGAATCCATTATGATTAAA+AGG - chr1_3:66307230-66307249 Msa0134740:CDS 25.0%
!! CATGTTCCTTTTAATCATAA+TGG + chr1_3:66307239-66307258 None:intergenic 25.0%
! TTAATATTGTGGTTGAAACT+TGG + chr1_3:66307325-66307344 None:intergenic 25.0%
! ATGAAGAAGGGAAATTATTA+GGG + chr1_3:66306271-66306290 None:intergenic 25.0%
! ATTGTCAATGAGAAAAGAAA+GGG + chr1_3:66306321-66306340 None:intergenic 25.0%
!! TTGGGAAAATCATTATTTTC+AGG + chr1_3:66306344-66306363 None:intergenic 25.0%
!! AGAAGAGTAGTATTGTTATT+GGG + chr1_3:66306362-66306381 None:intergenic 25.0%
! AAGAAGAGTAGTATTGTTAT+TGG + chr1_3:66306363-66306382 None:intergenic 25.0%
!! AATAGCAACAAATCATTTTC+CGG - chr1_3:66306821-66306840 Msa0134740:CDS 25.0%
! TCATAATCATCATAACCTAT+TGG - chr1_3:66307165-66307184 Msa0134740:CDS 25.0%
! AGGAATCCATTATGATTAAA+AGG - chr1_3:66307230-66307249 Msa0134740:CDS 25.0%
!! CATGTTCCTTTTAATCATAA+TGG + chr1_3:66307239-66307258 None:intergenic 25.0%
! TTAATATTGTGGTTGAAACT+TGG + chr1_3:66307325-66307344 None:intergenic 25.0%
GATGAAGAAGGGAAATTATT+AGG + chr1_3:66306272-66306291 None:intergenic 30.0%
AAGAAGAAGATGATGAAGAA+GGG + chr1_3:66306283-66306302 None:intergenic 30.0%
GATTGTCAATGAGAAAAGAA+AGG + chr1_3:66306322-66306341 None:intergenic 30.0%
AATCTGCAAAATTAGCATCA+GGG + chr1_3:66306445-66306464 None:intergenic 30.0%
GCAATGTTTGAACAAGATAA+TGG - chr1_3:66306476-66306495 Msa0134740:CDS 30.0%
! GTCACAACAAAATTTGGAAT+CGG + chr1_3:66306530-66306549 None:intergenic 30.0%
TTATAGGAGGAAAGAAAGAT+AGG - chr1_3:66306573-66306592 Msa0134740:CDS 30.0%
ATGGTAGTTGTTCTTCTAAA+GGG - chr1_3:66306858-66306877 Msa0134740:CDS 30.0%
CTAAAGGGAGAAAATTGAAA+TGG - chr1_3:66306873-66306892 Msa0134740:CDS 30.0%
GAATGCAACAAGAAGAAATT+AGG - chr1_3:66306987-66307006 Msa0134740:CDS 30.0%
AAAAGAAGGGTTACTACTAT+AGG + chr1_3:66307146-66307165 None:intergenic 30.0%
TAGGTATTTCACTATCCAAT+AGG + chr1_3:66307183-66307202 None:intergenic 30.0%
! TGAAACTTGGTAATTCCTTA+GGG + chr1_3:66307312-66307331 None:intergenic 30.0%
! TTGAAACTTGGTAATTCCTT+AGG + chr1_3:66307313-66307332 None:intergenic 30.0%
GATGAAGAAGGGAAATTATT+AGG + chr1_3:66306272-66306291 None:intergenic 30.0%
AAGAAGAAGATGATGAAGAA+GGG + chr1_3:66306283-66306302 None:intergenic 30.0%
GATTGTCAATGAGAAAAGAA+AGG + chr1_3:66306322-66306341 None:intergenic 30.0%
AATCTGCAAAATTAGCATCA+GGG + chr1_3:66306445-66306464 None:intergenic 30.0%
GCAATGTTTGAACAAGATAA+TGG - chr1_3:66306476-66306495 Msa0134740:CDS 30.0%
! GTCACAACAAAATTTGGAAT+CGG + chr1_3:66306530-66306549 None:intergenic 30.0%
TTATAGGAGGAAAGAAAGAT+AGG - chr1_3:66306573-66306592 Msa0134740:CDS 30.0%
ATGGTAGTTGTTCTTCTAAA+GGG - chr1_3:66306858-66306877 Msa0134740:CDS 30.0%
CTAAAGGGAGAAAATTGAAA+TGG - chr1_3:66306873-66306892 Msa0134740:CDS 30.0%
GAATGCAACAAGAAGAAATT+AGG - chr1_3:66306987-66307006 Msa0134740:CDS 30.0%
AAAAGAAGGGTTACTACTAT+AGG + chr1_3:66307146-66307165 None:intergenic 30.0%
TAGGTATTTCACTATCCAAT+AGG + chr1_3:66307183-66307202 None:intergenic 30.0%
! TGAAACTTGGTAATTCCTTA+GGG + chr1_3:66307312-66307331 None:intergenic 30.0%
! TTGAAACTTGGTAATTCCTT+AGG + chr1_3:66307313-66307332 None:intergenic 30.0%
GAAGAAGAAGATGATGAAGA+AGG + chr1_3:66306284-66306303 None:intergenic 35.0%
TCTTCTTCTTCTTACCCTAA+TGG - chr1_3:66306293-66306312 Msa0134740:CDS 35.0%
!! GAAAAGAAAGGGTACCATTA+GGG + chr1_3:66306310-66306329 None:intergenic 35.0%
!! AGAAAAGAAAGGGTACCATT+AGG + chr1_3:66306311-66306330 None:intergenic 35.0%
! TGATGTGTTGATGTAGTGAA+AGG + chr1_3:66306407-66306426 None:intergenic 35.0%
CAATCTGCAAAATTAGCATC+AGG + chr1_3:66306446-66306465 None:intergenic 35.0%
! CAAGATAATGGCTACAACTT+TGG - chr1_3:66306488-66306507 Msa0134740:CDS 35.0%
TGCTCTGTCACAACAAAATT+TGG + chr1_3:66306536-66306555 None:intergenic 35.0%
AGTAAGATTCACACATCACA+GGG - chr1_3:66306599-66306618 Msa0134740:CDS 35.0%
GATGGTAGTTGTTCTTCTAA+AGG - chr1_3:66306857-66306876 Msa0134740:CDS 35.0%
TCAGTTTCAGTACTATCAAC+AGG + chr1_3:66307085-66307104 None:intergenic 35.0%
!! TGTTGATAGTACTGAAACTG+AGG - chr1_3:66307084-66307103 Msa0134740:CDS 35.0%
AGTGAAATACCTAGAGATCA+TGG - chr1_3:66307190-66307209 Msa0134740:CDS 35.0%
TTAAATCCACCATGATCTCT+AGG + chr1_3:66307202-66307221 None:intergenic 35.0%
!! TGGTGGATTTAATGTGATTG+AGG - chr1_3:66307210-66307229 Msa0134740:CDS 35.0%
! GGATAGTAGGAATTAGGTTT+TGG + chr1_3:66307291-66307310 None:intergenic 35.0%
GCATGTAGATAGATTCATAG+TGG + chr1_3:66307419-66307438 None:intergenic 35.0%
GAAGAAGAAGATGATGAAGA+AGG + chr1_3:66306284-66306303 None:intergenic 35.0%
TCTTCTTCTTCTTACCCTAA+TGG - chr1_3:66306293-66306312 Msa0134740:CDS 35.0%
!! GAAAAGAAAGGGTACCATTA+GGG + chr1_3:66306310-66306329 None:intergenic 35.0%
!! AGAAAAGAAAGGGTACCATT+AGG + chr1_3:66306311-66306330 None:intergenic 35.0%
! TGATGTGTTGATGTAGTGAA+AGG + chr1_3:66306407-66306426 None:intergenic 35.0%
CAATCTGCAAAATTAGCATC+AGG + chr1_3:66306446-66306465 None:intergenic 35.0%
! CAAGATAATGGCTACAACTT+TGG - chr1_3:66306488-66306507 Msa0134740:CDS 35.0%
TGCTCTGTCACAACAAAATT+TGG + chr1_3:66306536-66306555 None:intergenic 35.0%
AGTAAGATTCACACATCACA+GGG - chr1_3:66306599-66306618 Msa0134740:CDS 35.0%
GATGGTAGTTGTTCTTCTAA+AGG - chr1_3:66306857-66306876 Msa0134740:CDS 35.0%
TCAGTTTCAGTACTATCAAC+AGG + chr1_3:66307085-66307104 None:intergenic 35.0%
!! TGTTGATAGTACTGAAACTG+AGG - chr1_3:66307084-66307103 Msa0134740:CDS 35.0%
AGTGAAATACCTAGAGATCA+TGG - chr1_3:66307190-66307209 Msa0134740:CDS 35.0%
TTAAATCCACCATGATCTCT+AGG + chr1_3:66307202-66307221 None:intergenic 35.0%
!! TGGTGGATTTAATGTGATTG+AGG - chr1_3:66307210-66307229 Msa0134740:CDS 35.0%
! GGATAGTAGGAATTAGGTTT+TGG + chr1_3:66307291-66307310 None:intergenic 35.0%
GCATGTAGATAGATTCATAG+TGG + chr1_3:66307419-66307438 None:intergenic 35.0%
GCAAAATTAGCATCAGGGAA+TGG + chr1_3:66306440-66306459 None:intergenic 40.0%
AAACAACCAGCAGCAGTTAT+AGG - chr1_3:66306557-66306576 Msa0134740:CDS 40.0%
CAGTAAGATTCACACATCAC+AGG - chr1_3:66306598-66306617 Msa0134740:CDS 40.0%
! AGCAACAAATCATTTTCCGG+CGG - chr1_3:66306824-66306843 Msa0134740:CDS 40.0%
TGTTACAAGATGTGTAGCAG+TGG - chr1_3:66306962-66306981 Msa0134740:CDS 40.0%
CAAGAAGAAATTAGGTACCC+TGG - chr1_3:66306995-66307014 Msa0134740:CDS 40.0%
! GTATTTGTTGAATCTGCACC+AGG + chr1_3:66307022-66307041 None:intergenic 40.0%
AAACTGAGGCTTATGCAAGA+TGG - chr1_3:66307098-66307117 Msa0134740:CDS 40.0%
GAAATACCTAGAGATCATGG+TGG - chr1_3:66307193-66307212 Msa0134740:CDS 40.0%
CCTTAGGGATAGTAGGAATT+AGG + chr1_3:66307297-66307316 None:intergenic 40.0%
CCTAATTCCTACTATCCCTA+AGG - chr1_3:66307294-66307313 Msa0134740:CDS 40.0%
GGTAATTCCTTAGGGATAGT+AGG + chr1_3:66307304-66307323 None:intergenic 40.0%
TGGAGTTGAACAAGGGAATA+AGG + chr1_3:66307362-66307381 None:intergenic 40.0%
TCCCTTGTTCAACTCCAAAT+TGG - chr1_3:66307365-66307384 Msa0134740:CDS 40.0%
! CCCAATTTGGAGTTGAACAA+GGG + chr1_3:66307369-66307388 None:intergenic 40.0%
CCCTTGTTCAACTCCAAATT+GGG - chr1_3:66307366-66307385 Msa0134740:CDS 40.0%
! TCCCAATTTGGAGTTGAACA+AGG + chr1_3:66307370-66307389 None:intergenic 40.0%
AGTGGCTATTCCACAAAAGT+TGG + chr1_3:66307401-66307420 None:intergenic 40.0%
GCAAAATTAGCATCAGGGAA+TGG + chr1_3:66306440-66306459 None:intergenic 40.0%
AAACAACCAGCAGCAGTTAT+AGG - chr1_3:66306557-66306576 Msa0134740:CDS 40.0%
CAGTAAGATTCACACATCAC+AGG - chr1_3:66306598-66306617 Msa0134740:CDS 40.0%
! AGCAACAAATCATTTTCCGG+CGG - chr1_3:66306824-66306843 Msa0134740:CDS 40.0%
TGTTACAAGATGTGTAGCAG+TGG - chr1_3:66306962-66306981 Msa0134740:CDS 40.0%
CAAGAAGAAATTAGGTACCC+TGG - chr1_3:66306995-66307014 Msa0134740:CDS 40.0%
! GTATTTGTTGAATCTGCACC+AGG + chr1_3:66307022-66307041 None:intergenic 40.0%
AAACTGAGGCTTATGCAAGA+TGG - chr1_3:66307098-66307117 Msa0134740:CDS 40.0%
GAAATACCTAGAGATCATGG+TGG - chr1_3:66307193-66307212 Msa0134740:CDS 40.0%
CCTTAGGGATAGTAGGAATT+AGG + chr1_3:66307297-66307316 None:intergenic 40.0%
CCTAATTCCTACTATCCCTA+AGG - chr1_3:66307294-66307313 Msa0134740:CDS 40.0%
GGTAATTCCTTAGGGATAGT+AGG + chr1_3:66307304-66307323 None:intergenic 40.0%
TGGAGTTGAACAAGGGAATA+AGG + chr1_3:66307362-66307381 None:intergenic 40.0%
TCCCTTGTTCAACTCCAAAT+TGG - chr1_3:66307365-66307384 Msa0134740:CDS 40.0%
! CCCAATTTGGAGTTGAACAA+GGG + chr1_3:66307369-66307388 None:intergenic 40.0%
CCCTTGTTCAACTCCAAATT+GGG - chr1_3:66307366-66307385 Msa0134740:CDS 40.0%
! TCCCAATTTGGAGTTGAACA+AGG + chr1_3:66307370-66307389 None:intergenic 40.0%
AGTGGCTATTCCACAAAAGT+TGG + chr1_3:66307401-66307420 None:intergenic 40.0%
TTTCCTCCTATAACTGCTGC+TGG + chr1_3:66306566-66306585 None:intergenic 45.0%
ACAGGGTTTGAGAGACAGAA+GGG - chr1_3:66306616-66306635 Msa0134740:CDS 45.0%
AACCAAGCAACACACTTGAG+TGG - chr1_3:66306702-66306721 Msa0134740:CDS 45.0%
! AACAAATCATTTTCCGGCGG+TGG - chr1_3:66306827-66306846 Msa0134740:CDS 45.0%
CAAGAGCAAGAGCTAGAGAA+AGG - chr1_3:66306936-66306955 Msa0134740:CDS 45.0%
! TTGGAGCTAGTCTCCCAATT+TGG + chr1_3:66307382-66307401 None:intergenic 45.0%
!! GAGACTAGCTCCAACTTTTG+TGG - chr1_3:66307388-66307407 Msa0134740:CDS 45.0%
CTACATGCTTCTTGAATCCG+TGG - chr1_3:66307431-66307450 Msa0134740:CDS 45.0%
TTTCCTCCTATAACTGCTGC+TGG + chr1_3:66306566-66306585 None:intergenic 45.0%
ACAGGGTTTGAGAGACAGAA+GGG - chr1_3:66306616-66306635 Msa0134740:CDS 45.0%
AACCAAGCAACACACTTGAG+TGG - chr1_3:66306702-66306721 Msa0134740:CDS 45.0%
! AACAAATCATTTTCCGGCGG+TGG - chr1_3:66306827-66306846 Msa0134740:CDS 45.0%
CAAGAGCAAGAGCTAGAGAA+AGG - chr1_3:66306936-66306955 Msa0134740:CDS 45.0%
! TTGGAGCTAGTCTCCCAATT+TGG + chr1_3:66307382-66307401 None:intergenic 45.0%
!! GAGACTAGCTCCAACTTTTG+TGG - chr1_3:66307388-66307407 Msa0134740:CDS 45.0%
CTACATGCTTCTTGAATCCG+TGG - chr1_3:66307431-66307450 Msa0134740:CDS 45.0%
CAACCAGCAGCAGTTATAGG+AGG - chr1_3:66306560-66306579 Msa0134740:CDS 50.0%
CACAGGGTTTGAGAGACAGA+AGG - chr1_3:66306615-66306634 Msa0134740:CDS 50.0%
! AGCCACTCAAGTGTGTTGCT+TGG + chr1_3:66306707-66306726 None:intergenic 50.0%
! AAATCATTTTCCGGCGGTGG+TGG - chr1_3:66306830-66306849 Msa0134740:CDS 50.0%
GAAATTAGGTACCCTGGACC+TGG - chr1_3:66307001-66307020 Msa0134740:CDS 50.0%
TTGAATCTGCACCAGGTCCA+GGG + chr1_3:66307015-66307034 None:intergenic 50.0%
CAACCAGCAGCAGTTATAGG+AGG - chr1_3:66306560-66306579 Msa0134740:CDS 50.0%
CACAGGGTTTGAGAGACAGA+AGG - chr1_3:66306615-66306634 Msa0134740:CDS 50.0%
! AGCCACTCAAGTGTGTTGCT+TGG + chr1_3:66306707-66306726 None:intergenic 50.0%
! AAATCATTTTCCGGCGGTGG+TGG - chr1_3:66306830-66306849 Msa0134740:CDS 50.0%
GAAATTAGGTACCCTGGACC+TGG - chr1_3:66307001-66307020 Msa0134740:CDS 50.0%
TTGAATCTGCACCAGGTCCA+GGG + chr1_3:66307015-66307034 None:intergenic 50.0%
GTTGAATCTGCACCAGGTCC+AGG + chr1_3:66307016-66307035 None:intergenic 55.0%
GTTGAATCTGCACCAGGTCC+AGG + chr1_3:66307016-66307035 None:intergenic 55.0%
!! TCATTTTCCGGCGGTGGTGG+CGG - chr1_3:66306833-66306852 Msa0134740:CDS 60.0%
!! TCATTTTCCGGCGGTGGTGG+CGG - chr1_3:66306833-66306852 Msa0134740:CDS 60.0%
ACCATCGCCGCCACCACCGC+CGG + chr1_3:66306843-66306862 None:intergenic 75.0%
ACCATCGCCGCCACCACCGC+CGG + chr1_3:66306843-66306862 None:intergenic 75.0%
!!! TCCGGCGGTGGTGGCGGCGA+TGG - chr1_3:66306839-66306858 Msa0134740:CDS 80.0%
!!! TCCGGCGGTGGTGGCGGCGA+TGG - chr1_3:66306839-66306858 Msa0134740:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 66306257 66307456 66306257 ID=Msa0134740;Name=Msa0134740
chr1_3 mRNA 66306257 66307456 66306257 ID=Msa0134740-mRNA-1;Parent=Msa0134740;Name=Msa0134740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|399
chr1_3 exon 66306257 66307456 66306257 ID=Msa0134740-mRNA-1:exon:22648;Parent=Msa0134740-mRNA-1
chr1_3 CDS 66306257 66307456 66306257 ID=Msa0134740-mRNA-1:cds;Parent=Msa0134740-mRNA-1
Gene Sequence

>Msa0134740

ATGTTCTCTTTCCCTAATAATTTCCCTTCTTCATCATCTTCTTCTTCTTACCCTAATGGTACCCTTTCTTTTCTCATTGACAATCCTGAAAATAATGATTTTCCCAATAACAATACTACTCTTCTTGATGATTCACTACTTTCTATTCCTTTCACTACATCAACACATCATGATGTTGTTCCATTCCCTGATGCTAATTTTGCAGATTGTAACAACACTGCAATGTTTGAACAAGATAATGGCTACAACTTTGGTGTTAATAGTAGTTTTCCGATTCCAAATTTTGTTGTGACAGAGCAGAAACAACCAGCAGCAGTTATAGGAGGAAAGAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAAGATATGTTAGAGTTTGACAAACCAAGCAACACACTTGAGTGGCTTTTCACTAAATCTGACACTGCAATCAAAGAACTAGCTAGAACTAAAAACGCTGCTTGTTACAACAACAACGACAACAGCCCATTTTTTGATTCAAATAGCAACAAATCATTTTCCGGCGGTGGTGGCGGCGATGGTAGTTGTTCTTCTAAAGGGAGAAAATTGAAATGGACACAGAAAGAAGAAACAAAAAAAGAGTCAAGAGAAAGAGCAAGAGCAAGAGCTAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTGGAAGAATGCAACAAGAAGAAATTAGGTACCCTGGACCTGGTGCAGATTCAACAAATACTCAACAAATGCTGCAACAATTGATGTCATCTTCAACATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAGACCTATAGTAGTAACCCTTCTTTTCATAATCATCATAACCTATTGGATAGTGAAATACCTAGAGATCATGGTGGATTTAATGTGATTGAGGAATCCATTATGATTAAAAGGAACATGATGTCTGCTACTTCTTCTCAATATCATCACCAAAACCTAATTCCTACTATCCCTAAGGAATTACCAAGTTTCAACCACAATATTAATAATAATGATTACTCCTTATTCCCTTGTTCAACTCCAAATTGGGAGACTAGCTCCAACTTTTGTGGAATAGCCACTATGAATCTATCTACATGCTTCTTGAATCCGTGGTAA
Protein sequence

>Msa0134740

MFSFPNNFPSSSSSSSYPNGTLSFLIDNPENNDFPNNNTTLLDDSLLSIPFTTSTHHDVVPFPDANFADCNNTAMFEQDNGYNFGVNSSFPIPNFVVTEQKQPAAVIGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNDNSPFFDSNSNKSFSGGGGGDGSCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQQEEIRYPGPGADSTNTQQMLQQLMSSSTSPVDSTETEAYARWRQLLQLQTYSSNPSFHNHHNLLDSEIPRDHGGFNVIEESIMIKRNMMSATSSQYHHQNLIPTIPKELPSFNHNINNNDYSLFPCSTPNWETSSNFCGIATMNLSTCFLNPW*