AlfalfaGEDB | Msa0135340

M. sativa cultivar zhongmu-4 / Msa0135340

KEGG: -
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010187 GO:0016020 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0097305 GO:1900140 GO:1901700 GO:2000026
PFAM: PF00514.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135340	XP_003592432.1	99.432	704	4	0	1	704	1	704	0.0	1429

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135340	sp\|B9DHT4\|ARIA_ARATH	79.315	701	141	2	4	702	6	704	0.0	1100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135340	G7IE13	99.432	704	4	0	1	704	1	704	0.0	1429

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TFs/TRs:

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Gene ID	Type	Classification
Msa0135340	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135340	MtrunA17_Chr1g0205751	99.432	704	4	0	1	704	1	704	0.0	1429
Msa0135340	MtrunA17_Chr5g0394261	84.993	693	102	1	12	702	7	699	0.0	1174
Msa0135340	MtrunA17_Chr7g0259851	63.930	682	238	4	18	698	11	685	0.0	851
Msa0135340	MtrunA17_Chr1g0149211	27.179	390	252	13	137	508	104	479	5.64e-19	91.3
Msa0135340	MtrunA17_Chr7g0259501	31.288	163	92	3	517	664	187	344	1.17e-16	82.8
Msa0135340	MtrunA17_Chr1g0152561	26.000	250	177	3	295	536	74	323	8.18e-16	79.7
Msa0135340	MtrunA17_Chr3g0106931	30.978	184	125	2	194	377	549	730	2.80e-15	80.1
Msa0135340	MtrunA17_Chr1g0185861	31.098	164	89	4	519	664	191	348	2.99e-15	78.6
Msa0135340	MtrunA17_Chr5g0440341	26.020	196	123	6	524	700	183	375	7.12e-13	71.2
Msa0135340	MtrunA17_Chr4g0031431	30.769	195	131	4	198	391	353	544	3.66e-12	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135340	AT5G19330.1	79.315	701	141	2	4	702	6	704	0.0	1100
Msa0135340	AT5G19330.2	73.231	650	115	7	4	645	6	604	0.0	874
Msa0135340	AT5G13060.1	62.121	660	248	2	39	697	68	726	0.0	835
Msa0135340	AT3G06190.5	32.022	178	99	4	522	681	182	355	1.58e-17	85.5
Msa0135340	AT3G06190.1	32.298	161	88	3	522	664	182	339	8.28e-17	83.6
Msa0135340	AT5G19000.1	29.747	158	96	2	522	664	183	340	2.20e-14	76.3
Msa0135340	AT5G19000.3	29.747	158	96	2	522	664	183	340	2.20e-14	76.3
Msa0135340	AT3G03740.1	31.126	151	87	2	533	667	210	359	4.53e-14	75.9
Msa0135340	AT3G43700.3	34.694	147	77	4	539	667	205	350	1.09e-13	73.6
Msa0135340	AT3G43700.2	34.694	147	77	4	539	667	205	350	1.12e-13	73.6

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Find 202 sgRNAs with CRISPR-Local

Find 613 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCCCATCTAATATT+TGG	0.076983	1_3:-66967625	None:intergenic
AAACTTCCCATCTAATATTT+GGG	0.326330	1_3:-66967624	None:intergenic
AAAGCATCTCTATCAAAGGT+CGG	0.649168	1_3:-66963952	None:intergenic
AAAGGGAGTGCTTTCGCATT+AGG	0.305562	1_3:+66960641	Msa0135340:CDS
AAAGGTGTACCATAGGTCTA+CGG	0.599871	1_3:+66969227	Msa0135340:three_prime_UTR
AAATAAAATGCGTAGAGAAA+AGG	0.479091	1_3:+66969261	Msa0135340:three_prime_UTR
AAATGATGAAAATAAAATTC+AGG	0.399085	1_3:+66962842	Msa0135340:CDS
AAATGTCTGCCTTTGCATTG+GGG	0.623106	1_3:+66963999	Msa0135340:CDS
AACAATTATCATATGAGGAA+TGG	0.488923	1_3:-66968995	None:intergenic
AACCAGTTATTGGATTACTT+AGG	0.550875	1_3:+66963191	Msa0135340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGTTAGACGAAGAATTAC+CGG	+	chr1_3:66960250-66960269	Msa0135340:CDS	30.0%
TACAGTATGTCCTGTTTAAT+AGG	-	chr1_3:66961106-66961125	None:intergenic	30.0%
ACTGTATTGAATGATCTATG+TGG	+	chr1_3:66961120-66961139	Msa0135340:intron	30.0%
TCTTGAATACAACATAACTG+TGG	-	chr1_3:66961184-66961203	None:intergenic	30.0%
ACAGTTATGTTGTATTCAAG+AGG	+	chr1_3:66961183-66961202	Msa0135340:intron	30.0%
CAGTTATGTTGTATTCAAGA+GGG	+	chr1_3:66961184-66961203	Msa0135340:intron	30.0%
TACAACAAACAAACTTTCAG+GGG	-	chr1_3:66961427-66961446	None:intergenic	30.0%
TACAGTCATAATGAAATACG+AGG	+	chr1_3:66961660-66961679	Msa0135340:intron	30.0%
TTAAAGTGAATGTCTCTCAT+AGG	+	chr1_3:66962148-66962167	Msa0135340:intron	30.0%
AAATAATAAATTGGGTGGTC+TGG	+	chr1_3:66962174-66962193	Msa0135340:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	66960047	66969342	66960047	ID=Msa0135340;Name=Msa0135340
chr1_3	mRNA	66960047	66969342	66960047	ID=Msa0135340-mRNA-1;Parent=Msa0135340;Name=Msa0135340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=147\|1\|1\|1\|1\|1\|19\|626\|704
chr1_3	exon	66960047	66960440	66960047	ID=Msa0135340-mRNA-1:exon:22893;Parent=Msa0135340-mRNA-1
chr1_3	exon	66960522	66960679	66960522	ID=Msa0135340-mRNA-1:exon:22894;Parent=Msa0135340-mRNA-1
chr1_3	exon	66962491	66962663	66962491	ID=Msa0135340-mRNA-1:exon:22895;Parent=Msa0135340-mRNA-1
chr1_3	exon	66962743	66962863	66962743	ID=Msa0135340-mRNA-1:exon:22896;Parent=Msa0135340-mRNA-1
chr1_3	exon	66962936	66963010	66962936	ID=Msa0135340-mRNA-1:exon:22897;Parent=Msa0135340-mRNA-1
chr1_3	exon	66963118	66963212	66963118	ID=Msa0135340-mRNA-1:exon:22898;Parent=Msa0135340-mRNA-1
chr1_3	exon	66963397	66963472	66963397	ID=Msa0135340-mRNA-1:exon:22899;Parent=Msa0135340-mRNA-1
chr1_3	exon	66963926	66964033	66963926	ID=Msa0135340-mRNA-1:exon:22900;Parent=Msa0135340-mRNA-1
chr1_3	exon	66964413	66964541	66964413	ID=Msa0135340-mRNA-1:exon:22901;Parent=Msa0135340-mRNA-1
chr1_3	exon	66965347	66965415	66965347	ID=Msa0135340-mRNA-1:exon:22902;Parent=Msa0135340-mRNA-1
chr1_3	exon	66965609	66965668	66965609	ID=Msa0135340-mRNA-1:exon:22903;Parent=Msa0135340-mRNA-1
chr1_3	exon	66965809	66965932	66965809	ID=Msa0135340-mRNA-1:exon:22904;Parent=Msa0135340-mRNA-1
chr1_3	exon	66966044	66966183	66966044	ID=Msa0135340-mRNA-1:exon:22905;Parent=Msa0135340-mRNA-1
chr1_3	exon	66966968	66967031	66966968	ID=Msa0135340-mRNA-1:exon:22906;Parent=Msa0135340-mRNA-1
chr1_3	exon	66967158	66967237	66967158	ID=Msa0135340-mRNA-1:exon:22907;Parent=Msa0135340-mRNA-1
chr1_3	exon	66967598	66967662	66967598	ID=Msa0135340-mRNA-1:exon:22908;Parent=Msa0135340-mRNA-1
chr1_3	exon	66967755	66967872	66967755	ID=Msa0135340-mRNA-1:exon:22909;Parent=Msa0135340-mRNA-1
chr1_3	exon	66967998	66968122	66967998	ID=Msa0135340-mRNA-1:exon:22910;Parent=Msa0135340-mRNA-1
chr1_3	exon	66968629	66969342	66968629	ID=Msa0135340-mRNA-1:exon:22911;Parent=Msa0135340-mRNA-1
chr1_3	five_prime_UTR	66960047	66960193	66960047	ID=Msa0135340-mRNA-1:five_prime_utr;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66960194	66960440	66960194	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66960522	66960679	66960522	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66962491	66962663	66962491	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66962743	66962863	66962743	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66962936	66963010	66962936	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66963118	66963212	66963118	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66963397	66963472	66963397	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66963926	66964033	66963926	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66964413	66964541	66964413	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66965347	66965415	66965347	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66965609	66965668	66965609	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66965809	66965932	66965809	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66966044	66966183	66966044	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66966968	66967031	66966968	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66967158	66967237	66967158	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66967598	66967662	66967598	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66967755	66967872	66967755	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66967998	66968122	66967998	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	CDS	66968629	66968716	66968629	ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3	three_prime_UTR	66968717	66969342	66968717	ID=Msa0135340-mRNA-1:three_prime_utr;Parent=Msa0135340-mRNA-1

Gene Sequence

>Msa0135340

ATGGAGTTTCAGAGACGCCAAGGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGTAAGTTAGACGAAGAATTACCGGAAGACCGTCAGATCTCGTCGGCACCGCCTACCGCCGACGAACGTGCGGCACTTCTCGTCGAAGTTGCTAATCAGGTCACCGTTCTCGAGTCTACTTTCACGTGGAATGAAGACGATCGAGCCGCGGCTAAGCGTGCTACTCATGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAATGTGATTGTGGAAGGAGGTGCGATTCCGGCTTTGATTAAGCATCTTCAAGCACCGCCTGTTACTGATTGCGTTCAGAAGCCGTTGCCGTTTGAGCATGAAGTTGAGAAAGGGAGTGCTTTCGCATTAGGACTTCTCGCAGTCAAGCCGGAACATCAACAACTAATTGTGGACAGTGGTGCCTTAACACACCTTGTTGATCTTTTAAAGAGGCATAATAATGGTTTGACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTCGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTGGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACTCTAGCTTTTAAAAATGATGAAAATAAAATTCAGATTGTTGAATGTGATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATCGGAAATCTAGTTCACTCATCTCCGAATATAAAGAAAGAGGTTCTATTTGCTGGTGCTTTACAACCAGTTATTGGATTACTTAGCTCACGCTGCCCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTTGCAGCTACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTCCTGATGTACAACTTAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGTTTAGTGCCACTTCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCGGATTTCATTAGGGTAGGTGGAGTTCAAAGACTACAAGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGTTGAACCATCTGTTATATCTTATGCGAGTTTCAGAAAGGGGTTTTCAAAGGCGAATTGCGTTGGTTCTTGCACATCTTTGCCCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAGTTGCTTATCAGTCTTCTCAGCTCATCCAGCTCCAAACAGCAACTTGATGGTGCTGCGGCTTTATGCAAGTTGGCCAATAAAGCCTCGGCCCTGTCTCCTGTAGACGCCGCTCCTCCTTCTCCAACACCACAGGTTTACTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGCTTTTATGCTCATAGAATTTGTCTACTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATATCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGATGGACTGAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCATTATCATTGAGGCATGCATGCATTCTTTTTATCTTGGAGCACTTTGATAAGTTGAGCGCGAGGCCAGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAATGCCAACTCCCATAGACTGTAA

Protein sequence

>Msa0135340

MEFQRRQGHCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEDDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKIQIVECDALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSRCPESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSERGFQRRIALVLAHLCPADDQRRIFIEHHGLELLISLLSSSSSKQQLDGAAALCKLANKASALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDITPDIAQDLLRAADQYLLDGLKRLCEYTIAQDILLENVSSMYELSEAFNALSLRHACILFILEHFDKLSARPGHSLLIQRIIPEIRNYFVKALTNANSHRL*