AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0135340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135340 MtrunA17_Chr1g0205751 99.432 704 4 0 1 704 1 704 0.0 1429
Msa0135340 MtrunA17_Chr5g0394261 84.993 693 102 1 12 702 7 699 0.0 1174
Msa0135340 MtrunA17_Chr7g0259851 63.930 682 238 4 18 698 11 685 0.0 851
Msa0135340 MtrunA17_Chr1g0149211 27.179 390 252 13 137 508 104 479 5.64e-19 91.3
Msa0135340 MtrunA17_Chr7g0259501 31.288 163 92 3 517 664 187 344 1.17e-16 82.8
Msa0135340 MtrunA17_Chr1g0152561 26.000 250 177 3 295 536 74 323 8.18e-16 79.7
Msa0135340 MtrunA17_Chr3g0106931 30.978 184 125 2 194 377 549 730 2.80e-15 80.1
Msa0135340 MtrunA17_Chr1g0185861 31.098 164 89 4 519 664 191 348 2.99e-15 78.6
Msa0135340 MtrunA17_Chr5g0440341 26.020 196 123 6 524 700 183 375 7.12e-13 71.2
Msa0135340 MtrunA17_Chr4g0031431 30.769 195 131 4 198 391 353 544 3.66e-12 69.7
Msa0135340 MtrunA17_Chr7g0261371 28.270 237 161 4 175 411 497 724 6.66e-12 68.9
Msa0135340 MtrunA17_Chr4g0074371 24.138 319 217 10 59 372 47 345 1.97e-11 66.6
Msa0135340 MtrunA17_Chr1g0199321 30.928 194 132 2 198 391 345 536 7.36e-11 65.5
Msa0135340 MtrunA17_Chr4g0044411 27.778 198 141 2 198 395 373 568 9.19e-11 65.1
Msa0135340 MtrunA17_Chr3g0084371 25.161 310 202 8 220 513 238 533 9.80e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135340 AT5G19330.1 79.315 701 141 2 4 702 6 704 0.0 1100
Msa0135340 AT5G19330.2 73.231 650 115 7 4 645 6 604 0.0 874
Msa0135340 AT5G13060.1 62.121 660 248 2 39 697 68 726 0.0 835
Msa0135340 AT3G06190.5 32.022 178 99 4 522 681 182 355 1.58e-17 85.5
Msa0135340 AT3G06190.1 32.298 161 88 3 522 664 182 339 8.28e-17 83.6
Msa0135340 AT5G19000.1 29.747 158 96 2 522 664 183 340 2.20e-14 76.3
Msa0135340 AT5G19000.3 29.747 158 96 2 522 664 183 340 2.20e-14 76.3
Msa0135340 AT3G03740.1 31.126 151 87 2 533 667 210 359 4.53e-14 75.9
Msa0135340 AT3G43700.3 34.694 147 77 4 539 667 205 350 1.09e-13 73.6
Msa0135340 AT3G43700.2 34.694 147 77 4 539 667 205 350 1.12e-13 73.6
Msa0135340 AT2G23140.1 30.978 184 125 2 194 377 542 723 1.16e-13 75.1
Msa0135340 AT2G23140.2 30.978 184 125 2 194 377 539 720 1.22e-13 75.1
Msa0135340 AT2G23140.4 30.978 184 125 2 194 377 539 720 1.22e-13 75.1
Msa0135340 AT3G43700.1 34.694 147 77 4 539 667 205 350 1.44e-13 73.9
Msa0135340 AT1G23030.1 29.740 269 179 8 140 402 272 536 2.35e-13 73.9
Msa0135340 AT2G23140.3 30.978 184 125 2 194 377 350 531 2.51e-13 73.9
Msa0135340 AT2G23140.5 30.978 184 125 2 194 377 350 531 2.51e-13 73.9
Msa0135340 AT3G46510.1 26.502 283 173 6 198 480 354 601 2.52e-13 73.9
Msa0135340 AT4G02150.1 25.407 307 202 11 72 372 139 424 4.74e-13 72.8
Msa0135340 AT3G01400.1 26.147 218 145 4 290 495 73 286 1.60e-12 70.1
Msa0135340 AT5G67340.1 25.714 280 185 7 146 411 364 634 2.25e-12 70.9
Msa0135340 AT5G67340.2 25.714 280 185 7 146 411 364 634 2.25e-12 70.9
Msa0135340 AT5G58680.1 24.569 232 163 3 288 509 69 298 3.15e-12 69.3
Msa0135340 AT4G02150.2 25.172 290 191 10 72 356 139 407 3.47e-12 69.3
Msa0135340 AT2G39760.1 32.143 140 77 2 540 664 195 331 2.05e-11 67.0
Msa0135340 AT2G39760.2 32.143 140 77 2 540 664 195 331 2.52e-11 66.2
Msa0135340 AT2G39760.4 32.143 140 77 2 540 664 195 331 3.12e-11 65.9
Msa0135340 AT2G39760.3 32.143 140 77 2 540 664 195 331 3.12e-11 65.9
Msa0135340 AT3G06720.1 22.500 320 221 9 59 372 123 421 4.90e-11 66.2
Msa0135340 AT3G06720.2 22.500 320 221 9 59 372 123 421 4.90e-11 66.2

Find 202 sgRNAs with CRISPR-Local

Find 613 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTTCCCATCTAATATT+TGG 0.076983 1_3:-66967625 None:intergenic
GCCGCTTCCCTCTGACTTTC+AGG 0.083665 1_3:-66963407 None:intergenic
CCCTTCTTCTCTCTCGTTCA+TGG 0.174906 1_3:+66960175 Msa0135340:exon
ATTAAACTGCTGGGTAATTT+AGG 0.203631 1_3:+66969065 Msa0135340:three_prime_UTR
CTCTTATTCTTCCTCTCTAC+TGG 0.226379 1_3:-66969305 None:intergenic
GGTGCTTTACAACCAGTTAT+TGG 0.256939 1_3:+66963181 Msa0135340:CDS
AGACAGGGCCGAGGCTTTAT+TGG 0.273094 1_3:-66966125 None:intergenic
TGCCTTTGCATTGGGGAGAT+TGG 0.285881 1_3:+66964006 Msa0135340:CDS
TCACTGCAGATTACAGTCTA+TGG 0.287035 1_3:-66968704 None:intergenic
AGAACCTCTTTCTTTATATT+CGG 0.303887 1_3:-66963151 None:intergenic
AAAGGGAGTGCTTTCGCATT+AGG 0.305562 1_3:+66960641 Msa0135340:CDS
AATCAAAATCAGATAGAAAA+TGG 0.310165 1_3:-66960089 None:intergenic
CCTACGAATGAGACTATTAA+TGG 0.310848 1_3:-66962582 None:intergenic
TCCACCACTTGTTCATTTGC+TGG 0.314607 1_3:+66962758 Msa0135340:CDS
CAATGTTTGATGGTGGTTAT+AGG 0.316662 1_3:+66967215 Msa0135340:CDS
ATAATGTGTCGGATTTCATT+AGG 0.317549 1_3:+66965348 Msa0135340:CDS
TGTCTCTCAGGATATATTAC+TGG 0.318295 1_3:+66967988 Msa0135340:intron
AAACTTCCCATCTAATATTT+GGG 0.326330 1_3:-66967624 None:intergenic
CAAGACATTGAAAAGATTAG+AGG 0.333836 1_3:+66965629 Msa0135340:CDS
GCGTCCAGATTTATATATAC+TGG 0.337107 1_3:+66967747 Msa0135340:intron
TAGAGATCCCAAATATTAGA+TGG 0.348876 1_3:+66967617 Msa0135340:CDS
AAGAAAGAGGTTCTATTTGC+TGG 0.352180 1_3:+66963160 Msa0135340:CDS
TGTGGAAGGAGGTGCGATTC+CGG 0.359310 1_3:+66960541 Msa0135340:CDS
TTCACAAACAATTAAACTGC+TGG 0.367993 1_3:+66969055 Msa0135340:three_prime_UTR
GAAATGTCTGCCTTTGCATT+GGG 0.370822 1_3:+66963998 Msa0135340:CDS
TCTCGTCGAAGTTGCTAATC+AGG 0.372235 1_3:+66960325 Msa0135340:CDS
TACCTAAGTAATCCAATAAC+TGG 0.378852 1_3:-66963193 None:intergenic
TTCTGAACGCAATCAGTAAC+AGG 0.383768 1_3:-66960590 None:intergenic
AGATAGAAAATGGCGAGAAT+TGG 0.385650 1_3:-66960079 None:intergenic
AGAAGGTCTTGAGCAATATC+TGG 0.388231 1_3:-66967786 None:intergenic
CCTCAATGATAATGCATTGA+AGG 0.391244 1_3:-66968044 None:intergenic
AAGAATAAGAGGGGTGCAGT+TGG 0.392577 1_3:+66969317 Msa0135340:three_prime_UTR
GACGAGATCTGACGGTCTTC+CGG 0.398909 1_3:-66960269 None:intergenic
AAATGATGAAAATAAAATTC+AGG 0.399085 1_3:+66962842 Msa0135340:CDS
GAAGGAGGAGCGGCGTCTAC+AGG 0.402577 1_3:-66966148 None:intergenic
GTGACACCAGCAGCATGCCT+TGG 0.403277 1_3:-66969161 None:intergenic
AGTCGACCTGTATACCATAA+AGG 0.404275 1_3:-66968805 None:intergenic
CTTTCTTTCTTTCTTTGATG+TGG 0.410738 1_3:+66968874 Msa0135340:three_prime_UTR
ATTCTTCTTTGATCATCTGC+AGG 0.411866 1_3:-66965893 None:intergenic
CCGCTTCCCTCTGACTTTCA+GGG 0.417129 1_3:-66963406 None:intergenic
ACAAAGTAATTGCGGATCTC+TGG 0.420288 1_3:-66968657 None:intergenic
ACAATTAGTTGTTGATGTTC+CGG 0.420661 1_3:-66962491 None:intergenic
TACATTCTGTACATCGCAAT+TGG 0.421151 1_3:-66968746 None:intergenic
TAATGTGTCGGATTTCATTA+GGG 0.421529 1_3:+66965349 Msa0135340:CDS
AGCACCATCAAGTTGCTGTT+TGG 0.423972 1_3:-66966083 None:intergenic
AGGGAAGCGGCATTGTTACT+TGG 0.426859 1_3:+66963419 Msa0135340:CDS
TGTACATCGCAATTGGTTAG+AGG 0.428663 1_3:-66968739 None:intergenic
AGCTCCAAACAGCAACTTGA+TGG 0.434657 1_3:+66966079 Msa0135340:CDS
TCATAGATATAGTAAATATA+CGG 0.436226 1_3:+66968931 Msa0135340:three_prime_UTR
CAGTAGAGAGGAAGAATAAG+AGG 0.436926 1_3:+66969306 Msa0135340:three_prime_UTR
TTCTCAACTTCATGCTCAAA+CGG 0.439189 1_3:-66960620 None:intergenic
TTCTTGTGTTGTACCAGGAA+GGG 0.439973 1_3:+66968777 Msa0135340:three_prime_UTR
GCATTTCGTGCAATGTTTGA+TGG 0.440899 1_3:+66967205 Msa0135340:CDS
TAAGTTAGACGAAGAATTAC+CGG 0.441802 1_3:+66960250 Msa0135340:CDS
AATGTTTGATGGTGGTTATA+GGG 0.449011 1_3:+66967216 Msa0135340:CDS
AAGATCAACAAGGTGTGTTA+AGG 0.453328 1_3:-66962525 None:intergenic
TGACACCAGCAGCATGCCTT+GGG 0.456887 1_3:-66969160 None:intergenic
ATTTGAATGGATCACAGAAC+TGG 0.458725 1_3:-66960047 None:intergenic
TTGGAAATGAAAGATTTGAA+TGG 0.459307 1_3:-66960060 None:intergenic
AGAAATGTCTGCCTTTGCAT+TGG 0.459751 1_3:+66963997 Msa0135340:CDS
ATCAAGTTGCTGTTTGGAGC+TGG 0.459757 1_3:-66966077 None:intergenic
TGCTCATAGAATTTGTCTAC+TGG 0.460117 1_3:+66967171 Msa0135340:CDS
TGCATTGGGGAGATTGGCCC+AGG 0.465694 1_3:+66964012 Msa0135340:CDS
ATTTCTCTAAGTTGTACATC+AGG 0.465886 1_3:-66963980 None:intergenic
AATAAGAGGGGTGCAGTTGG+AGG 0.466339 1_3:+66969320 Msa0135340:three_prime_UTR
TTTCTTGTGTTGTACCAGGA+AGG 0.469611 1_3:+66968776 Msa0135340:three_prime_UTR
TCTTGTGTTGTACCAGGAAG+GGG 0.473703 1_3:+66968778 Msa0135340:three_prime_UTR
AAATAAAATGCGTAGAGAAA+AGG 0.479091 1_3:+66969261 Msa0135340:three_prime_UTR
TCCATGAACGAGAGAGAAGA+AGG 0.480698 1_3:-66960176 None:intergenic
TCTTATTCTTCCTCTCTACT+GGG 0.481698 1_3:-66969304 None:intergenic
GGGTCTCCTTTATGGTATAC+AGG 0.483215 1_3:+66968799 Msa0135340:three_prime_UTR
TTTCTTATGCAATATTGTGA+TGG 0.483721 1_3:+66968970 Msa0135340:three_prime_UTR
AACAATTATCATATGAGGAA+TGG 0.488923 1_3:-66968995 None:intergenic
GAGCGGCGTCTACAGGAGAC+AGG 0.489511 1_3:-66966141 None:intergenic
CATGAGAGGCAAACCTGACA+TGG 0.490179 1_3:-66962655 None:intergenic
GATAAGTTGAGCGCGAGGCC+AGG 0.490906 1_3:+66968100 Msa0135340:CDS
CTCGCCGATCTCGCGAAGAA+TGG 0.492122 1_3:+66960419 Msa0135340:CDS
TACGGCCCAAGGCATGCTGC+TGG 0.492787 1_3:+66969155 Msa0135340:three_prime_UTR
TCACTGCCTCTCCGAGAGGA+AGG 0.495947 1_3:+66960217 Msa0135340:CDS
ACTGCCTCTCCGAGAGGAAG+GGG 0.496118 1_3:+66960219 Msa0135340:CDS
TCTCGGAGAGGCAGTGACCT+TGG 0.498509 1_3:-66960211 None:intergenic
TTTGAGCATGAAGTTGAGAA+AGG 0.499940 1_3:+66960623 Msa0135340:CDS
GTATTACAGGTTGGTGTGAT+CGG 0.500755 1_3:+66963109 Msa0135340:intron
ATCTTATGCGAGTTTCAGAA+AGG 0.503114 1_3:+66965828 Msa0135340:CDS
GCAACATTAAAACCCATGTC+AGG 0.505215 1_3:+66962642 Msa0135340:CDS
ACGTTAACAATTATCATATG+AGG 0.508263 1_3:-66969000 None:intergenic
TTCTTCTTACAGGTTTACTT+AGG 0.509350 1_3:+66966956 Msa0135340:intron
TCTTATGCGAGTTTCAGAAA+GGG 0.510889 1_3:+66965829 Msa0135340:CDS
TTTACCATTCTTCGCGAGAT+CGG 0.511331 1_3:-66960423 None:intergenic
AGATATGTTCCGTAGACCTA+TGG 0.512252 1_3:-66969236 None:intergenic
TTTCTGTGTAGGATGGAAGG+TGG 0.512896 1_3:+66962732 Msa0135340:intron
TTATGGCCTTGCAGAGAATG+AGG 0.514595 1_3:+66964520 Msa0135340:CDS
TAATGATGCTAGAGACAGAA+AGG 0.515534 1_3:-66968905 None:intergenic
TGTCAGACGACAGGAATTAA+CGG 0.516782 1_3:-66969093 None:intergenic
TGTGGTGTTGGTTGGCGCTA+TGG 0.517130 1_3:-66960142 None:intergenic
CCATTAATAGTCTCATTCGT+AGG 0.517559 1_3:+66962582 Msa0135340:CDS
AGATTACAGTCTATGGGAGT+TGG 0.519743 1_3:-66968697 None:intergenic
GCACGTTCGTCGGCGGTAGG+CGG 0.520168 1_3:-66960296 None:intergenic
CCCTGAAAGTCAGAGGGAAG+CGG 0.523107 1_3:+66963406 Msa0135340:CDS
TGGCGCTATGGTTAACAGAA+TGG 0.523930 1_3:-66960130 None:intergenic
ATTGATCAGCTGCTCGAAGA+AGG 0.530249 1_3:-66967803 None:intergenic
TTAATTCCTGTCGTCTGACA+TGG 0.531784 1_3:+66969096 Msa0135340:three_prime_UTR
CACTGCCTCTCCGAGAGGAA+GGG 0.532570 1_3:+66960218 Msa0135340:CDS
TTGAGCATGAAGTTGAGAAA+GGG 0.538121 1_3:+66960624 Msa0135340:CDS
ATCTCCGAATATAAAGAAAG+AGG 0.539197 1_3:+66963147 Msa0135340:CDS
ATAAGTTGAGCGCGAGGCCA+GGG 0.542921 1_3:+66968101 Msa0135340:CDS
TTCTTCTTTGATCATCTGCA+GGG 0.544161 1_3:-66965892 None:intergenic
CCTTCAATGCATTATCATTG+AGG 0.544504 1_3:+66968044 Msa0135340:CDS
TGAAGATGCTTAATCAAAGC+CGG 0.546672 1_3:-66960560 None:intergenic
GAGAAGTGCCGCACGTTCGT+CGG 0.547594 1_3:-66960306 None:intergenic
TCGGATTTCATTAGGGTAGG+TGG 0.548232 1_3:+66965356 Msa0135340:CDS
GGTGAAGAAGAGTGTGGTGT+TGG 0.550186 1_3:-66960154 None:intergenic
GTTATTTCTTGTGTTGTACC+AGG 0.550400 1_3:+66968772 Msa0135340:three_prime_UTR
AACCAGTTATTGGATTACTT+AGG 0.550875 1_3:+66963191 Msa0135340:CDS
TCACAAACAATTAAACTGCT+GGG 0.551171 1_3:+66969056 Msa0135340:three_prime_UTR
TCCTCCTTCTCCAACACCAC+AGG 0.551268 1_3:+66966162 Msa0135340:CDS
ACCTGTGGTGTTGGAGAAGG+AGG 0.552899 1_3:-66966163 None:intergenic
ACTGCTGGGTAATTTAGGCC+AGG 0.553069 1_3:+66969070 Msa0135340:three_prime_UTR
TACTATACTCGTACGGCCCA+AGG 0.554502 1_3:+66969144 Msa0135340:three_prime_UTR
CACTGCAGATTACAGTCTAT+GGG 0.555635 1_3:-66968703 None:intergenic
TCCAGCAAATGAACAAGTGG+TGG 0.556965 1_3:-66962759 None:intergenic
CGCAGCATTAGAATCAGAGT+CGG 0.557692 1_3:-66962957 None:intergenic
CATTGTGTGCAATACCAGCT+TGG 0.557922 1_3:-66964424 None:intergenic
AAGGTGCAAAGAGCAGCTGC+TGG 0.559222 1_3:+66962795 Msa0135340:CDS
GAGCTTTAACAAAGTAATTG+CGG 0.561626 1_3:-66968665 None:intergenic
TTCCCCACAGGATAATGTGT+CGG 0.562985 1_3:+66965337 Msa0135340:intron
AATGATGCTAGAGACAGAAA+GGG 0.564027 1_3:-66968904 None:intergenic
GCTGGAATTTGCTGATACAA+AGG 0.566935 1_3:+66962776 Msa0135340:CDS
AGATTAGAGGAGAAGATTCA+CGG 0.568629 1_3:+66965642 Msa0135340:CDS
GAGTCAAGAAGCTTGAGAAG+TGG 0.569377 1_3:-66964458 None:intergenic
AAGAAGAGTGTGGTGTTGGT+TGG 0.575072 1_3:-66960150 None:intergenic
GGAAGTGGTGAATGTGATTG+TGG 0.575329 1_3:+66960523 Msa0135340:CDS
CTTGAACCTACCTGTGGTGT+TGG 0.575698 1_3:-66966172 None:intergenic
AGAGAACATGCACTACTCTC+CGG 0.577511 1_3:-66968845 None:intergenic
CTTATGCGAGTTTCAGAAAG+GGG 0.578222 1_3:+66965830 Msa0135340:CDS
AAGAAGGGTGAAGAAGAGTG+TGG 0.578694 1_3:-66960160 None:intergenic
TGAATGGATCACAGAACTGG+AGG 0.580296 1_3:-66960044 None:intergenic
ATCATACCTCATTCTCTGCA+AGG 0.581209 1_3:-66964526 None:intergenic
ATGAGTAGCACGCTTAGCCG+CGG 0.581562 1_3:-66960393 None:intergenic
GCCGCACGTTCGTCGGCGGT+AGG 0.583158 1_3:-66960299 None:intergenic
CACGCTGCCCTGAAAGTCAG+AGG 0.583183 1_3:+66963399 Msa0135340:CDS
CTTGTGTTGTACCAGGAAGG+GGG 0.585650 1_3:+66968779 Msa0135340:three_prime_UTR
AGTAGAGAGGAAGAATAAGA+GGG 0.586698 1_3:+66969307 Msa0135340:three_prime_UTR
AGAGATCCCAAATATTAGAT+GGG 0.587179 1_3:+66967618 Msa0135340:CDS
CAAGTTGGCCAATAAAGCCT+CGG 0.587308 1_3:+66966117 Msa0135340:CDS
CTCGCATAAGATATAACAGA+TGG 0.587389 1_3:-66965817 None:intergenic
ATTAGGACTTCTCGCAGTCA+AGG 0.590051 1_3:+66960658 Msa0135340:CDS
TGCTGCTATTCATTATGAAG+CGG 0.591200 1_3:+66962989 Msa0135340:CDS
ACAGTTCCATGTCAGACGAC+AGG 0.591963 1_3:-66969102 None:intergenic
GACGAAAGCATCTCTATCAA+AGG 0.592011 1_3:-66963956 None:intergenic
GGAACATCAACAACTAATTG+TGG 0.592529 1_3:+66962493 Msa0135340:CDS
ACTTCATGCTCAAACGGCAA+CGG 0.593141 1_3:-66960614 None:intergenic
AGCTACTGATTCAGACTGCA+AGG 0.598009 1_3:+66963451 Msa0135340:CDS
GTCTACAGGAGACAGGGCCG+AGG 0.599726 1_3:-66966134 None:intergenic
AAAGGTGTACCATAGGTCTA+CGG 0.599871 1_3:+66969227 Msa0135340:three_prime_UTR
AAGTGCCGCACGTTCGTCGG+CGG 0.602387 1_3:-66960303 None:intergenic
GTGTCGGATTTCATTAGGGT+AGG 0.603157 1_3:+66965353 Msa0135340:CDS
GACGACAGGAATTAACGGCC+TGG 0.604652 1_3:-66969088 None:intergenic
GGCCAATCTCCCCAATGCAA+AGG 0.606240 1_3:-66964008 None:intergenic
TAAAATGCGTAGAGAAAAGG+AGG 0.606366 1_3:+66969264 Msa0135340:three_prime_UTR
CCTACCTGTGGTGTTGGAGA+AGG 0.607565 1_3:-66966166 None:intergenic
CAGGACACACATAACCAAGC+TGG 0.608709 1_3:+66964410 Msa0135340:intron
ATGGAGTTTCAGAGACGCCA+AGG 0.609263 1_3:+66960194 Msa0135340:CDS
GCCTACCGCCGACGAACGTG+CGG 0.610300 1_3:+66960298 Msa0135340:CDS
CATGACAGGAGAAGGATGCA+AGG 0.611719 1_3:+66967590 Msa0135340:intron
CATTAATAGTCTCATTCGTA+GGG 0.616601 1_3:+66962583 Msa0135340:CDS
ACTTTCTGCACCCAGTAGAG+AGG 0.617802 1_3:+66969294 Msa0135340:three_prime_UTR
TAGCAAATACTATACTCGTA+CGG 0.618303 1_3:+66969137 Msa0135340:three_prime_UTR
CTGTGAGTACACAATTGCAC+AGG 0.621930 1_3:+66967851 Msa0135340:CDS
AAATGTCTGCCTTTGCATTG+GGG 0.623106 1_3:+66963999 Msa0135340:CDS
AATTCCAGCAAATGAACAAG+TGG 0.624346 1_3:-66962762 None:intergenic
GCTGGTATTGCACACAATGG+TGG 0.625726 1_3:+66964428 Msa0135340:CDS
TGCTGCGGCTTTATGCAAGT+TGG 0.629100 1_3:+66966102 Msa0135340:CDS
ACGCTGCCCTGAAAGTCAGA+GGG 0.634516 1_3:+66963400 Msa0135340:CDS
GTGGTGAATGTGATTGTGGA+AGG 0.635578 1_3:+66960527 Msa0135340:CDS
TTTCGTGCAATGTTTGATGG+TGG 0.641730 1_3:+66967208 Msa0135340:CDS
GGAGTTCAAAGACTACAAGA+AGG 0.642933 1_3:+66965377 Msa0135340:CDS
CCATGAACGAGAGAGAAGAA+GGG 0.644551 1_3:-66960175 None:intergenic
GCGGTGCCGACGAGATCTGA+CGG 0.644725 1_3:-66960277 None:intergenic
CTATGGTTAACAGAATGGAA+TGG 0.644888 1_3:-66960125 None:intergenic
CTAAAAGAAATACGTTACAC+CGG 0.648961 1_3:+66968826 Msa0135340:three_prime_UTR
AAAGCATCTCTATCAAAGGT+CGG 0.649168 1_3:-66963952 None:intergenic
ATGACAGGAGAAGGATGCAA+GGG 0.650751 1_3:+66967591 Msa0135340:intron
TGGTGTTGGAGAAGGAGGAG+CGG 0.652625 1_3:-66966158 None:intergenic
TTTGCCCCTTCCTCTCGGAG+AGG 0.654825 1_3:-66960223 None:intergenic
GAATGAAGACGATCGAGCCG+CGG 0.657533 1_3:+66960376 Msa0135340:CDS
TTCTCGAGTCTACTTTCACG+TGG 0.661326 1_3:+66960354 Msa0135340:CDS
GTGAATGTGATTGTGGAAGG+AGG 0.669059 1_3:+66960530 Msa0135340:CDS
ATGAGAGGCAAACCTGACAT+GGG 0.671038 1_3:-66962654 None:intergenic
TAGGTTCACATTGTACAGAG+AGG 0.672210 1_3:+66963923 Msa0135340:intron
ACAGCAACTTGATGGTGCTG+CGG 0.686608 1_3:+66966087 Msa0135340:CDS
AAGGTCACTGCCTCTCCGAG+AGG 0.690613 1_3:+66960213 Msa0135340:CDS
AGCGGCGTCTACAGGAGACA+GGG 0.692565 1_3:-66966140 None:intergenic
ACTTTGATAAGTTGAGCGCG+AGG 0.693850 1_3:+66968095 Msa0135340:CDS
GCCTCTTTAAAAGATCAACA+AGG 0.700661 1_3:-66962535 None:intergenic
CAAGCTGGTATTGCACACAA+TGG 0.700835 1_3:+66964425 Msa0135340:CDS
ATGATGCTAGAGACAGAAAG+GGG 0.701274 1_3:-66968903 None:intergenic
GGAAGACCGTCAGATCTCGT+CGG 0.712275 1_3:+66960271 Msa0135340:CDS
GTAGAGAGGAAGAATAAGAG+GGG 0.716782 1_3:+66969308 Msa0135340:three_prime_UTR
CAACAACTAATTGTGGACAG+TGG 0.718009 1_3:+66962500 Msa0135340:CDS
TGAACGCAATCAGTAACAGG+CGG 0.719381 1_3:-66960587 None:intergenic
CGTGAAAGTAGACTCGAGAA+CGG 0.732007 1_3:-66960351 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGATTTTATAAAATTAATT+TGG + chr1_3:66961356-66961375 Msa0135340:intron 10.0%
!! ATAGGTTTAAATAATAAATT+GGG + chr1_3:66962166-66962185 Msa0135340:intron 10.0%
!!! CAATTATATCTTTTTTTAAA+GGG - chr1_3:66962436-66962455 None:intergenic 10.0%
!!! ACAATTATATCTTTTTTTAA+AGG - chr1_3:66962437-66962456 None:intergenic 10.0%
!!! TTTTTTTTCTTAACATTATA+TGG + chr1_3:66962707-66962726 Msa0135340:intron 10.0%
!!! TATTTAAGTTTTTCTAATAT+TGG + chr1_3:66966573-66966592 Msa0135340:intron 10.0%
!!! AAAACATTTTATTGAAATAA+TGG - chr1_3:66967405-66967424 None:intergenic 10.0%
!!! TTTTATTTTTCCTATTAAAC+AGG + chr1_3:66961093-66961112 Msa0135340:intron 15.0%
!! AAAATAAGTAATTTCAGTAT+GGG - chr1_3:66961473-66961492 None:intergenic 15.0%
!! AAAAATAAGTAATTTCAGTA+TGG - chr1_3:66961474-66961493 None:intergenic 15.0%
!! CATAGGTTTAAATAATAAAT+TGG + chr1_3:66962165-66962184 Msa0135340:intron 15.0%
!! CATATATATAATACAAAGTA+TGG - chr1_3:66962391-66962410 None:intergenic 15.0%
!! CATACTTTGTATTATATATA+TGG + chr1_3:66962389-66962408 Msa0135340:intron 15.0%
!! AAATGATGAAAATAAAATTC+AGG + chr1_3:66962842-66962861 Msa0135340:CDS 15.0%
!!! AAACTGTAATGATAAATTTT+AGG + chr1_3:66963023-66963042 Msa0135340:intron 15.0%
!! ATATAAACAAATTCAAGATA+CGG - chr1_3:66963282-66963301 None:intergenic 15.0%
!!! TTGTTTTATTCAACAAAAAA+AGG - chr1_3:66963708-66963727 None:intergenic 15.0%
!! TATACAATGTTTACATTTAT+AGG + chr1_3:66964326-66964345 Msa0135340:intron 15.0%
!! CTGTTCAAATTTAATAAAAA+AGG + chr1_3:66966229-66966248 Msa0135340:intron 15.0%
!! TCAAATTTAATAAAAAAGGA+AGG + chr1_3:66966233-66966252 Msa0135340:intron 15.0%
!! CAAATTTAATAAAAAAGGAA+GGG + chr1_3:66966234-66966253 Msa0135340:intron 15.0%
!! AAATTTAATAAAAAAGGAAG+GGG + chr1_3:66966235-66966254 Msa0135340:intron 15.0%
!! AAAAGGATTGATATAAAAAA+AGG - chr1_3:66966356-66966375 None:intergenic 15.0%
!! TAACATATTGTTTATTTGAT+CGG + chr1_3:66967725-66967744 Msa0135340:intron 15.0%
!!! TTTTTTTTTCTAGTTCTTTT+TGG + chr1_3:66968286-66968305 Msa0135340:intron 15.0%
!!! TTTTTTTTCTAGTTCTTTTT+GGG + chr1_3:66968287-66968306 Msa0135340:intron 15.0%
!! AAATCATATGATATTTAGAA+TGG + chr1_3:66968554-66968573 Msa0135340:intron 15.0%
!! TCATAGATATAGTAAATATA+CGG + chr1_3:66968931-66968950 Msa0135340:three_prime_UTR 15.0%
!! AATCAAAATCAGATAGAAAA+TGG - chr1_3:66960092-66960111 None:intergenic 20.0%
!! TTATCAAATTTGTATGATTC+TGG + chr1_3:66960703-66960722 Msa0135340:intron 20.0%
!!! CATTTTTTAAAGTTTGTGTA+TGG - chr1_3:66960959-66960978 None:intergenic 20.0%
!! ATAGGAAAAATAAAACAGAA+CGG - chr1_3:66961088-66961107 None:intergenic 20.0%
!! AAATAAGTAATTTCAGTATG+GGG - chr1_3:66961472-66961491 None:intergenic 20.0%
!! TATTTCATTATGACTGTATA+TGG - chr1_3:66961658-66961677 None:intergenic 20.0%
!!! TCTCTGAAAAAAAAACATAT+CGG + chr1_3:66961907-66961926 Msa0135340:intron 20.0%
!!! GAAAAAATCAAATGAGTTTT+TGG + chr1_3:66962084-66962103 Msa0135340:intron 20.0%
!! TATAAACAAATTCAAGATAC+GGG - chr1_3:66963281-66963300 None:intergenic 20.0%
!! TGTCAAGAAACAAAAAAATT+GGG - chr1_3:66963306-66963325 None:intergenic 20.0%
!! TTGTCAAGAAACAAAAAAAT+TGG - chr1_3:66963307-66963326 None:intergenic 20.0%
!!! TCTAGAATAGTTGATTATAT+AGG + chr1_3:66963823-66963842 Msa0135340:intron 20.0%
!! GAAAAAAAAAACAATAACCT+GGG - chr1_3:66964032-66964051 None:intergenic 20.0%
!! AGAAAAAAAAAACAATAACC+TGG - chr1_3:66964033-66964052 None:intergenic 20.0%
!! ATCTAAAAATCTATTACAGA+AGG - chr1_3:66964136-66964155 None:intergenic 20.0%
!! ATCTAAAAATCTATTACAGA+AGG - chr1_3:66964136-66964155 None:intergenic 20.0%
!! TGGAAAAAAAATATCAATCA+TGG - chr1_3:66964386-66964405 None:intergenic 20.0%
!!! GATATTTTTTTTCCAATTTC+AGG + chr1_3:66964391-66964410 Msa0135340:intron 20.0%
!! TGTCTTGTGATATATTATTA+TGG - chr1_3:66964652-66964671 None:intergenic 20.0%
!! CCATTATTTAAATTTAAGAG+TGG - chr1_3:66965272-66965291 None:intergenic 20.0%
!! CCACTCTTAAATTTAAATAA+TGG + chr1_3:66965269-66965288 Msa0135340:intron 20.0%
!! GGGAAAAATAAAACAAAAAA+GGG - chr1_3:66965322-66965341 None:intergenic 20.0%
!! GAAATATAACAAGTACAAAA+AGG - chr1_3:66966000-66966019 None:intergenic 20.0%
!!! TTTCCTTTTGATTTTAACAT+AGG + chr1_3:66966318-66966337 Msa0135340:intron 20.0%
!! TTTCCTATGTTAAAATCAAA+AGG - chr1_3:66966324-66966343 None:intergenic 20.0%
!!! ATATCAATCCTTTTTAGAAA+AGG + chr1_3:66966362-66966381 Msa0135340:intron 20.0%
!!! TATCAATCCTTTTTAGAAAA+GGG + chr1_3:66966363-66966382 Msa0135340:intron 20.0%
!!! TAATGTCTGGTTTTTTTTTT+TGG - chr1_3:66966799-66966818 None:intergenic 20.0%
!! TTATAAACTATTCTTCTTAC+AGG + chr1_3:66966946-66966965 Msa0135340:intron 20.0%
!! ATATATCCATGTTTGTAAAA+TGG + chr1_3:66967943-66967962 Msa0135340:intron 20.0%
!! TATATCCATGTTTGTAAAAT+GGG + chr1_3:66967944-66967963 Msa0135340:intron 20.0%
!! TTTATACTGAACTAATAACT+TGG + chr1_3:66968163-66968182 Msa0135340:intron 20.0%
! TTGGAAATGAAAGATTTGAA+TGG - chr1_3:66960063-66960082 None:intergenic 25.0%
! TAGAAATGAGAAAAAGAAGT+TGG + chr1_3:66960854-66960873 Msa0135340:intron 25.0%
! TTAGTATAAGAGTTTAGCTA+AGG + chr1_3:66961044-66961063 Msa0135340:intron 25.0%
!!! GAATTTTGAGTTTGTCATAT+TGG + chr1_3:66961142-66961161 Msa0135340:intron 25.0%
!!! ATCTGTTTTGAATGTATTGT+TGG + chr1_3:66961259-66961278 Msa0135340:intron 25.0%
! TTACAACAAACAAACTTTCA+GGG - chr1_3:66961428-66961447 None:intergenic 25.0%
! TTTACAACAAACAAACTTTC+AGG - chr1_3:66961429-66961448 None:intergenic 25.0%
!!! AGTTTGTTTGTTGTAAACTT+TGG + chr1_3:66961432-66961451 Msa0135340:intron 25.0%
! AAAATAGGTACTATCAGAAA+AGG - chr1_3:66961539-66961558 None:intergenic 25.0%
! GATGTGATTTCAGTTAAAAT+AGG - chr1_3:66961554-66961573 None:intergenic 25.0%
!! CTCTGAAAAAAAAACATATC+GGG + chr1_3:66961908-66961927 Msa0135340:intron 25.0%
! AAAAAAAAACATATCGGGTT+TGG + chr1_3:66961913-66961932 Msa0135340:intron 25.0%
! AAAAAAAACATATCGGGTTT+GGG + chr1_3:66961914-66961933 Msa0135340:intron 25.0%
! TGTTAGAAAAAAAGAAGTGA+TGG + chr1_3:66961943-66961962 Msa0135340:intron 25.0%
! GTTAGAAAAAAAGAAGTGAT+GGG + chr1_3:66961944-66961963 Msa0135340:intron 25.0%
! TTAGAAAAAAAGAAGTGATG+GGG + chr1_3:66961945-66961964 Msa0135340:intron 25.0%
! AATACTAAGAGAAAAATCCA+TGG + chr1_3:66962047-66962066 Msa0135340:intron 25.0%
! AGAATTTACTATCTCGTAAT+TGG - chr1_3:66962114-66962133 None:intergenic 25.0%
! GGTTTAAATAATAAATTGGG+TGG + chr1_3:66962169-66962188 Msa0135340:intron 25.0%
! GCTAAAATCAATCATGTAAT+TGG - chr1_3:66962275-66962294 None:intergenic 25.0%
!!! TACATGATTGATTTTAGCTT+TGG + chr1_3:66962277-66962296 Msa0135340:intron 25.0%
!!! CTTTTAAAGAGGCATAATAA+TGG + chr1_3:66962545-66962564 Msa0135340:CDS 25.0%
! TTGTATATTTAGACTCAGTT+TGG + chr1_3:66962683-66962702 Msa0135340:intron 25.0%
!! ATTATATGGATTTTCTGTGT+AGG + chr1_3:66962721-66962740 Msa0135340:intron 25.0%
! GATGAAAATAAAATTCAGGT+AGG + chr1_3:66962846-66962865 Msa0135340:intron 25.0%
! AATGAATTGGATTGTATTAC+AGG + chr1_3:66963096-66963115 Msa0135340:intron 25.0%
! AGAACCTCTTTCTTTATATT+CGG - chr1_3:66963154-66963173 None:intergenic 25.0%
! ATAAACAAATTCAAGATACG+GGG - chr1_3:66963280-66963299 None:intergenic 25.0%
!!! GATAGTGGAAAATTTTAGTT+AGG + chr1_3:66963500-66963519 Msa0135340:intron 25.0%
!!! TATTTTTGTACTTGTACTTG+AGG + chr1_3:66963583-66963602 Msa0135340:intron 25.0%
!! ATTTTTGTACTTGTACTTGA+GGG + chr1_3:66963584-66963603 Msa0135340:intron 25.0%
! TAAAACAACTGAACATTAGT+TGG + chr1_3:66963720-66963739 Msa0135340:intron 25.0%
! AAAACAACTGAACATTAGTT+GGG + chr1_3:66963721-66963740 Msa0135340:intron 25.0%
! TAATACAAAACAACCAAACA+TGG - chr1_3:66963771-66963790 None:intergenic 25.0%
! ACACAATTGAGTTATAAACA+AGG - chr1_3:66964058-66964077 None:intergenic 25.0%
! TATAACTCAATTGTGTAAGT+TGG + chr1_3:66964062-66964081 Msa0135340:intron 25.0%
! ATAACTCAATTGTGTAAGTT+GGG + chr1_3:66964063-66964082 Msa0135340:intron 25.0%
! AAAATATCAATCATGGCAAA+GGG - chr1_3:66964379-66964398 None:intergenic 25.0%
! AAAAATATCAATCATGGCAA+AGG - chr1_3:66964380-66964399 None:intergenic 25.0%
!! CCAAAACATTTAAGATTTAG+AGG - chr1_3:66964696-66964715 None:intergenic 25.0%
!! CCTCTAAATCTTAAATGTTT+TGG + chr1_3:66964693-66964712 Msa0135340:intron 25.0%
!!! GTTTTGGAATTTTGCTTTTT+TGG + chr1_3:66964709-66964728 Msa0135340:intron 25.0%
!!! TATAGGCTTTAAGAGTAAAT+AGG + chr1_3:66964817-66964836 Msa0135340:intron 25.0%
!!! ATAGGCTTTAAGAGTAAATA+GGG + chr1_3:66964818-66964837 Msa0135340:intron 25.0%
! AAATACTAGACATAAGGATA+GGG - chr1_3:66965035-66965054 None:intergenic 25.0%
!! TAAATCATTTTATCCAAGCA+GGG - chr1_3:66965244-66965263 None:intergenic 25.0%
! GGGGAAAAATAAAACAAAAA+AGG - chr1_3:66965323-66965342 None:intergenic 25.0%
!!! ATTCTAGTTCCCTTTTATAT+AGG - chr1_3:66965484-66965503 None:intergenic 25.0%
! ATGTGAATAGTTATAGCATT+AGG + chr1_3:66965517-66965536 Msa0135340:intron 25.0%
! TGTGAATAGTTATAGCATTA+GGG + chr1_3:66965518-66965537 Msa0135340:intron 25.0%
! TATATCAACTATCAGTTCTA+TGG + chr1_3:66965742-66965761 Msa0135340:intron 25.0%
! ATATCAACTATCAGTTCTAT+GGG + chr1_3:66965743-66965762 Msa0135340:intron 25.0%
! ACCTATAAGAAGAAAATTGA+CGG - chr1_3:66965791-66965810 None:intergenic 25.0%
!! AGAATTTTTATTGAACACCA+TGG + chr1_3:66965911-66965930 Msa0135340:CDS 25.0%
! ATCTTCGTAAAATACTTTCA+TGG + chr1_3:66965941-66965960 Msa0135340:intron 25.0%
! TCTTCGTAAAATACTTTCAT+GGG + chr1_3:66965942-66965961 Msa0135340:intron 25.0%
!!! ATCAATCCTTTTTAGAAAAG+GGG + chr1_3:66966364-66966383 Msa0135340:intron 25.0%
! TATACAAAATGTGTGTTGAA+AGG - chr1_3:66966520-66966539 None:intergenic 25.0%
! AAGTACATAAAACAAATGGT+AGG - chr1_3:66966550-66966569 None:intergenic 25.0%
!!! ACCATTTGTTTTATGTACTT+TGG + chr1_3:66966550-66966569 Msa0135340:intron 25.0%
! ACCAAAGTACATAAAACAAA+TGG - chr1_3:66966554-66966573 None:intergenic 25.0%
! GATGTCTAGCTAAAAATATA+TGG + chr1_3:66966722-66966741 Msa0135340:intron 25.0%
!!! ATCAGATGCTCATTTTTAAA+TGG - chr1_3:66966749-66966768 None:intergenic 25.0%
! ATTTAAAAATGAGCATCTGA+TGG + chr1_3:66966748-66966767 Msa0135340:intron 25.0%
!! AAGACATTGATAATAATGTC+TGG - chr1_3:66966812-66966831 None:intergenic 25.0%
! TTCAACCAAAAATGTAACAT+CGG - chr1_3:66967011-66967030 None:intergenic 25.0%
! AACAAAGAAAAGAGATTAAC+CGG - chr1_3:66967134-66967153 None:intergenic 25.0%
!!! GGAAAAATATAATTTGGTGT+GGG - chr1_3:66967259-66967278 None:intergenic 25.0%
!! CAATAATGGTTTTCTTCTTT+TGG - chr1_3:66967360-66967379 None:intergenic 25.0%
! AAAACACGTTAAGTCAATAA+TGG - chr1_3:66967374-66967393 None:intergenic 25.0%
! AAACTTCCCATCTAATATTT+GGG - chr1_3:66967627-66967646 None:intergenic 25.0%
! AAAACTTCCCATCTAATATT+TGG - chr1_3:66967628-66967647 None:intergenic 25.0%
! TGATCCAGTATATATAAATC+TGG - chr1_3:66967754-66967773 None:intergenic 25.0%
! CATTAGAATATAAACTACCA+AGG - chr1_3:66968242-66968261 None:intergenic 25.0%
! AGAAAAAAAAAATCAGTGCA+CGG - chr1_3:66968277-66968296 None:intergenic 25.0%
! TTTAGACAAAGTTCATTCAA+AGG + chr1_3:66968412-66968431 Msa0135340:intron 25.0%
! TTAGACAAAGTTCATTCAAA+GGG + chr1_3:66968413-66968432 Msa0135340:intron 25.0%
! ACTGCACAGTTTATTTATAA+TGG + chr1_3:66968521-66968540 Msa0135340:intron 25.0%
! TAAGAAAAAACAATTCGTGA+AGG - chr1_3:66968957-66968976 None:intergenic 25.0%
! TTTCTTATGCAATATTGTGA+TGG + chr1_3:66968970-66968989 Msa0135340:three_prime_UTR 25.0%
! AACAATTATCATATGAGGAA+TGG - chr1_3:66968998-66969017 None:intergenic 25.0%
! ACGTTAACAATTATCATATG+AGG - chr1_3:66969003-66969022 None:intergenic 25.0%
! AAATAAAATGCGTAGAGAAA+AGG + chr1_3:66969261-66969280 Msa0135340:three_prime_UTR 25.0%
TAAGTTAGACGAAGAATTAC+CGG + chr1_3:66960250-66960269 Msa0135340:CDS 30.0%
TACAGTATGTCCTGTTTAAT+AGG - chr1_3:66961106-66961125 None:intergenic 30.0%
ACTGTATTGAATGATCTATG+TGG + chr1_3:66961120-66961139 Msa0135340:intron 30.0%
TCTTGAATACAACATAACTG+TGG - chr1_3:66961184-66961203 None:intergenic 30.0%
ACAGTTATGTTGTATTCAAG+AGG + chr1_3:66961183-66961202 Msa0135340:intron 30.0%
CAGTTATGTTGTATTCAAGA+GGG + chr1_3:66961184-66961203 Msa0135340:intron 30.0%
TACAACAAACAAACTTTCAG+GGG - chr1_3:66961427-66961446 None:intergenic 30.0%
TACAGTCATAATGAAATACG+AGG + chr1_3:66961660-66961679 Msa0135340:intron 30.0%
! GTTATTCGTGATAATGCATA+TGG + chr1_3:66961718-66961737 Msa0135340:intron 30.0%
! CTTATGGAATTGATTCACAA+AGG - chr1_3:66961748-66961767 None:intergenic 30.0%
! ATTTTTCTCTATGCTGTACA+AGG + chr1_3:66961866-66961885 Msa0135340:intron 30.0%
!!! ACTCATTTGATTTTTTCGCT+TGG - chr1_3:66962081-66962100 None:intergenic 30.0%
TTAAAGTGAATGTCTCTCAT+AGG + chr1_3:66962148-66962167 Msa0135340:intron 30.0%
AAATAATAAATTGGGTGGTC+TGG + chr1_3:66962174-66962193 Msa0135340:intron 30.0%
ACAATTAGTTGTTGATGTTC+CGG - chr1_3:66962494-66962513 None:intergenic 30.0%
!! ACCTTGTTGATCTTTTAAAG+AGG + chr1_3:66962534-66962553 Msa0135340:CDS 30.0%
CATTAATAGTCTCATTCGTA+GGG + chr1_3:66962583-66962602 Msa0135340:CDS 30.0%
AATTGGATTGTATTACAGGT+TGG + chr1_3:66963100-66963119 Msa0135340:intron 30.0%
ATCTCCGAATATAAAGAAAG+AGG + chr1_3:66963147-66963166 Msa0135340:CDS 30.0%
AACCAGTTATTGGATTACTT+AGG + chr1_3:66963191-66963210 Msa0135340:CDS 30.0%
TACCTAAGTAATCCAATAAC+TGG - chr1_3:66963196-66963215 None:intergenic 30.0%
! TTTTTGTACTTGTACTTGAG+GGG + chr1_3:66963585-66963604 Msa0135340:intron 30.0%
AAACAACTGAACATTAGTTG+GGG + chr1_3:66963722-66963741 Msa0135340:intron 30.0%
TTGCTAAAATAACAACTCCA+TGG + chr1_3:66963799-66963818 Msa0135340:intron 30.0%
!! AATCAACTATTCTAGAACCA+TGG - chr1_3:66963819-66963838 None:intergenic 30.0%
ATTTCTCTAAGTTGTACATC+AGG - chr1_3:66963983-66964002 None:intergenic 30.0%
! GTGATTCTCTTTTAGATTCA+TGG + chr1_3:66964089-66964108 Msa0135340:intron 30.0%
TACATCAATTAACGAGAAGA+TGG - chr1_3:66964238-66964257 None:intergenic 30.0%
TCGTTAATTGATGTATCTAG+TGG + chr1_3:66964243-66964262 Msa0135340:intron 30.0%
CGTTAATTGATGTATCTAGT+GGG + chr1_3:66964244-66964263 Msa0135340:intron 30.0%
CTAAGATGAGTTATGTTCTT+AGG - chr1_3:66964276-66964295 None:intergenic 30.0%
AAATATCAATCATGGCAAAG+GGG - chr1_3:66964378-66964397 None:intergenic 30.0%
AAGCTTCTTGACTCAAAAAA+TGG + chr1_3:66964467-66964486 Msa0135340:CDS 30.0%
AGCTTCTTGACTCAAAAAAT+GGG + chr1_3:66964468-66964487 Msa0135340:CDS 30.0%
AGATTTAGAGGTCAATCATT+TGG - chr1_3:66964684-66964703 None:intergenic 30.0%
ATAAACACAAAAAAGCCGTT+CGG - chr1_3:66964763-66964782 None:intergenic 30.0%
! TTTTGTGTTTATAAGCCCTT+CGG + chr1_3:66964771-66964790 Msa0135340:intron 30.0%
AAAGCCTATAAAACAACGTT+CGG - chr1_3:66964807-66964826 None:intergenic 30.0%
!! TAGGCTTTAAGAGTAAATAG+GGG + chr1_3:66964819-66964838 Msa0135340:intron 30.0%
GTTCTTCAGATTCAATAGAA+AGG - chr1_3:66964938-66964957 None:intergenic 30.0%
AATAACATTTGAGAGAGAGT+TGG - chr1_3:66965009-66965028 None:intergenic 30.0%
GAAATACTAGACATAAGGAT+AGG - chr1_3:66965036-66965055 None:intergenic 30.0%
ACTGACAATGTTGTATGATA+CGG - chr1_3:66965133-66965152 None:intergenic 30.0%
! GTAAATCATTTTATCCAAGC+AGG - chr1_3:66965245-66965264 None:intergenic 30.0%
!!! TTTGTTTTATTTTTCCCCAC+AGG + chr1_3:66965325-66965344 Msa0135340:intron 30.0%
ATAATGTGTCGGATTTCATT+AGG + chr1_3:66965348-66965367 Msa0135340:CDS 30.0%
TAATGTGTCGGATTTCATTA+GGG + chr1_3:66965349-66965368 Msa0135340:CDS 30.0%
CTGAAATAAGTGCTAAAACT+AGG - chr1_3:66965437-66965456 None:intergenic 30.0%
!!! CTAGTTTTAGCACTTATTTC+AGG + chr1_3:66965435-66965454 Msa0135340:intron 30.0%
TCCTTGGATTCCTATATAAA+AGG + chr1_3:66965471-66965490 Msa0135340:intron 30.0%
CCTTGGATTCCTATATAAAA+GGG + chr1_3:66965472-66965491 Msa0135340:intron 30.0%
TTATAGCATTAGGGATTGAA+CGG + chr1_3:66965527-66965546 Msa0135340:intron 30.0%
GGGGAAAAATAGATTCTTAT+TGG + chr1_3:66965548-66965567 Msa0135340:intron 30.0%
TATATTGACCTATGTGGATA+TGG + chr1_3:66965574-66965593 Msa0135340:intron 30.0%
AATAGAAACCATATCCACAT+AGG - chr1_3:66965585-66965604 None:intergenic 30.0%
! CTCTAATCTTTTCAATGTCT+TGG - chr1_3:66965631-66965650 None:intergenic 30.0%
CAAGACATTGAAAAGATTAG+AGG + chr1_3:66965629-66965648 Msa0135340:CDS 30.0%
! TCCGTCAATTTTCTTCTTAT+AGG + chr1_3:66965787-66965806 Msa0135340:intron 30.0%
ATTTGAACAGAAAGATTGTG+AGG - chr1_3:66966219-66966238 None:intergenic 30.0%
TTTATGATGTGAATAGGCAT+CGG + chr1_3:66966260-66966279 Msa0135340:intron 30.0%
!! TAAAGACCCCTTTTCTAAAA+AGG - chr1_3:66966373-66966392 None:intergenic 30.0%
TTTGGTAGAATAATAACGTC+TGG - chr1_3:66966781-66966800 None:intergenic 30.0%
TCGCTTTGTCTAAGTAATTA+TGG + chr1_3:66966892-66966911 Msa0135340:intron 30.0%
TTCTTCTTACAGGTTTACTT+AGG + chr1_3:66966956-66966975 Msa0135340:intron 30.0%
! ATTGTCCGATGTTACATTTT+TGG + chr1_3:66967003-66967022 Msa0135340:CDS 30.0%
!!! GATGTTACATTTTTGGTTGA+AGG + chr1_3:66967010-66967029 Msa0135340:CDS 30.0%
!!! TTTTTGGTTGAAGGTGATTA+TGG + chr1_3:66967019-66967038 Msa0135340:intron 30.0%
!!! GTTTTAAGAACGAAACAATG+TGG - chr1_3:66967049-66967068 None:intergenic 30.0%
AGCTACCTTCTCTTAAAATA+TGG + chr1_3:66967077-66967096 Msa0135340:intron 30.0%
!! CAGTACCATATTTTAAGAGA+AGG - chr1_3:66967085-66967104 None:intergenic 30.0%
! TAATCTCTTTTCTTTGTTGC+AGG + chr1_3:66967136-66967155 Msa0135340:intron 30.0%
!! AATGTTTGATGGTGGTTATA+GGG + chr1_3:66967216-66967235 Msa0135340:CDS 30.0%
! GGGAAAAATATAATTTGGTG+TGG - chr1_3:66967260-66967279 None:intergenic 30.0%
GGGAAGGGAAAAATATAATT+TGG - chr1_3:66967265-66967284 None:intergenic 30.0%
! TTGCAGTATGCTTATTTCTT+GGG - chr1_3:66967300-66967319 None:intergenic 30.0%
! TTTTATTGCATTTGCATGAC+AGG + chr1_3:66967576-66967595 Msa0135340:intron 30.0%
TAGAGATCCCAAATATTAGA+TGG + chr1_3:66967617-66967636 Msa0135340:CDS 30.0%
AGAGATCCCAAATATTAGAT+GGG + chr1_3:66967618-66967637 Msa0135340:CDS 30.0%
!!! AAGTTTTTGAGTTGATGATG+AGG + chr1_3:66967641-66967660 Msa0135340:CDS 30.0%
! GCTGATCAATATCTTTTAGA+TGG + chr1_3:66967816-66967835 Msa0135340:CDS 30.0%
! TGCATGCATTCTTTTTATCT+TGG + chr1_3:66968069-66968088 Msa0135340:CDS 30.0%
!!! CTTCATGTTTGTTGTAGTTT+TGG + chr1_3:66968209-66968228 Msa0135340:intron 30.0%
AGAATATAAACTACCAAGGT+CGG - chr1_3:66968238-66968257 None:intergenic 30.0%
ATGTGTGCTCAATATATAGT+TGG + chr1_3:66968329-66968348 Msa0135340:intron 30.0%
! GAGCTTTAACAAAGTAATTG+CGG - chr1_3:66968668-66968687 None:intergenic 30.0%
CTAAAAGAAATACGTTACAC+CGG + chr1_3:66968826-66968845 Msa0135340:three_prime_UTR 30.0%
CTTTCTTTCTTTCTTTGATG+TGG + chr1_3:66968874-66968893 Msa0135340:three_prime_UTR 30.0%
TTCACAAACAATTAAACTGC+TGG + chr1_3:66969055-66969074 Msa0135340:three_prime_UTR 30.0%
TCACAAACAATTAAACTGCT+GGG + chr1_3:66969056-66969075 Msa0135340:three_prime_UTR 30.0%
ATTAAACTGCTGGGTAATTT+AGG + chr1_3:66969065-66969084 Msa0135340:three_prime_UTR 30.0%
TAGCAAATACTATACTCGTA+CGG + chr1_3:66969137-66969156 Msa0135340:three_prime_UTR 30.0%
! TGTATGCGCTTGTTAAAAAA+AGG + chr1_3:66969209-66969228 Msa0135340:three_prime_UTR 30.0%
! GTTAAAAAAAGGTGTACCAT+AGG + chr1_3:66969220-66969239 Msa0135340:three_prime_UTR 30.0%
ATTTGAATGGATCACAGAAC+TGG - chr1_3:66960050-66960069 None:intergenic 35.0%
AGATAGAAAATGGCGAGAAT+TGG - chr1_3:66960082-66960101 None:intergenic 35.0%
CTATGGTTAACAGAATGGAA+TGG - chr1_3:66960128-66960147 None:intergenic 35.0%
ATGTGTGTGTGTGAATTTAC+TGG + chr1_3:66960484-66960503 Msa0135340:intron 35.0%
TGAAGATGCTTAATCAAAGC+CGG - chr1_3:66960563-66960582 None:intergenic 35.0%
TTCTCAACTTCATGCTCAAA+CGG - chr1_3:66960623-66960642 None:intergenic 35.0%
TTTGAGCATGAAGTTGAGAA+AGG + chr1_3:66960623-66960642 Msa0135340:CDS 35.0%
TTGAGCATGAAGTTGAGAAA+GGG + chr1_3:66960624-66960643 Msa0135340:CDS 35.0%
AAGAAGTTGGCATATTAGAG+TGG + chr1_3:66960867-66960886 Msa0135340:intron 35.0%
AGAAGTTGGCATATTAGAGT+GGG + chr1_3:66960868-66960887 Msa0135340:intron 35.0%
TTATATCAACATCCACTGTC+AGG + chr1_3:66961224-66961243 Msa0135340:intron 35.0%
TGTCATATTTCATTCCAGAG+AGG + chr1_3:66961284-66961303 Msa0135340:intron 35.0%
AGATCACTAATGCATGTACT+TGG + chr1_3:66961309-66961328 Msa0135340:intron 35.0%
GATCACTAATGCATGTACTT+GGG + chr1_3:66961310-66961329 Msa0135340:intron 35.0%
TTTCACTTCTACTCAAACAG+TGG + chr1_3:66961492-66961511 Msa0135340:intron 35.0%
! ATTTTTCTCAATGCCGAACA+AGG + chr1_3:66961819-66961838 Msa0135340:intron 35.0%
GTTGGCAAGTGAATTGATAA+AGG - chr1_3:66962335-66962354 None:intergenic 35.0%
AGTATGGTGAAAAAGTGACA+AGG - chr1_3:66962375-66962394 None:intergenic 35.0%
! TTTGAAATGCTTTCTACAGC+CGG + chr1_3:66962472-66962491 Msa0135340:intron 35.0%
GGAACATCAACAACTAATTG+TGG + chr1_3:66962493-66962512 Msa0135340:CDS 35.0%
AAGATCAACAAGGTGTGTTA+AGG - chr1_3:66962528-66962547 None:intergenic 35.0%
! GCCTCTTTAAAAGATCAACA+AGG - chr1_3:66962538-66962557 None:intergenic 35.0%
CCTACGAATGAGACTATTAA+TGG - chr1_3:66962585-66962604 None:intergenic 35.0%
CCATTAATAGTCTCATTCGT+AGG + chr1_3:66962582-66962601 Msa0135340:CDS 35.0%
AATATACAATCGTGCATGAG+AGG - chr1_3:66962672-66962691 None:intergenic 35.0%
! TATGGATTTTCTGTGTAGGA+TGG + chr1_3:66962725-66962744 Msa0135340:intron 35.0%
AATTCCAGCAAATGAACAAG+TGG - chr1_3:66962765-66962784 None:intergenic 35.0%
AATAAAATTCAGGTAGGCAG+TGG + chr1_3:66962852-66962871 Msa0135340:intron 35.0%
TGCTGCTATTCATTATGAAG+CGG + chr1_3:66962989-66963008 Msa0135340:CDS 35.0%
CTATTCATTATGAAGCGGTA+TGG + chr1_3:66962994-66963013 Msa0135340:intron 35.0%
ATTATGAAGCGGTATGGATA+AGG + chr1_3:66963000-66963019 Msa0135340:intron 35.0%
GTCTATATACATCTCTCATC+TGG + chr1_3:66963066-66963085 Msa0135340:intron 35.0%
ATCTGGCATATGCAATGAAT+TGG + chr1_3:66963083-66963102 Msa0135340:intron 35.0%
AAGAAAGAGGTTCTATTTGC+TGG + chr1_3:66963160-66963179 Msa0135340:CDS 35.0%
CTTAGGTATAATATCAGCTC+TGG + chr1_3:66963208-66963227 Msa0135340:intron 35.0%
AAGGGGAAATGCAATAGAAT+GGG - chr1_3:66963251-66963270 None:intergenic 35.0%
GATAAACTTCACAACCAGAA+GGG + chr1_3:66963478-66963497 Msa0135340:intron 35.0%
! AAATTTTCCACTATCCCTTC+TGG - chr1_3:66963495-66963514 None:intergenic 35.0%
CCAAACTTGAAAGTTTGACT+TGG - chr1_3:66963544-66963563 None:intergenic 35.0%
!! CCAAGTCAAACTTTCAAGTT+TGG + chr1_3:66963541-66963560 Msa0135340:intron 35.0%
!! AATCCCTCACTTCACTTTTA+TGG + chr1_3:66963632-66963651 Msa0135340:intron 35.0%
CAACCATAAAAGTGAAGTGA+GGG - chr1_3:66963638-66963657 None:intergenic 35.0%
ACAACCATAAAAGTGAAGTG+AGG - chr1_3:66963639-66963658 None:intergenic 35.0%
TCTTGAGTAGTTAAGAGAGA+TGG + chr1_3:66963660-66963679 Msa0135340:intron 35.0%
AACAACTGAACATTAGTTGG+GGG + chr1_3:66963723-66963742 Msa0135340:intron 35.0%
ACCAACTACAATTCCATGTT+TGG + chr1_3:66963755-66963774 Msa0135340:intron 35.0%
ACCAAACATGGAATTGTAGT+TGG - chr1_3:66963759-66963778 None:intergenic 35.0%
AATGTGAACCTAAACAAACC+AGG - chr1_3:66963915-66963934 None:intergenic 35.0%
! AAAGCATCTCTATCAAAGGT+CGG - chr1_3:66963955-66963974 None:intergenic 35.0%
ATTACAGAAGGAAGAGAAGA+TGG - chr1_3:66964181-66964200 None:intergenic 35.0%
ATCAATTAACGAGAAGATGG+AGG - chr1_3:66964235-66964254 None:intergenic 35.0%
!!! AATGCTGCTTTTGCTCTTTA+TGG + chr1_3:66964503-66964522 Msa0135340:CDS 35.0%
AACTGAAAATCCGAATGAAG+TGG + chr1_3:66964551-66964570 Msa0135340:intron 35.0%
TAAACACAAAAAAGCCGTTC+GGG - chr1_3:66964762-66964781 None:intergenic 35.0%
TTTGTGTTTATAAGCCCTTC+GGG + chr1_3:66964772-66964791 Msa0135340:intron 35.0%
AAGCCTATAAAACAACGTTC+GGG - chr1_3:66964806-66964825 None:intergenic 35.0%
!! AGGCTTTAAGAGTAAATAGG+GGG + chr1_3:66964820-66964839 Msa0135340:intron 35.0%
!! AACATTGATGACTGCTCTTT+TGG - chr1_3:66964847-66964866 None:intergenic 35.0%
! GTTTTGCCCATAGTTTTTCT+TGG + chr1_3:66964864-66964883 Msa0135340:intron 35.0%
GGAAAGCCAAGAAAAACTAT+GGG - chr1_3:66964873-66964892 None:intergenic 35.0%
AGGAAAGCCAAGAAAAACTA+TGG - chr1_3:66964874-66964893 None:intergenic 35.0%
AGAAAGGAGAGTAGATATGA+TGG - chr1_3:66964922-66964941 None:intergenic 35.0%
ATAGGTGGTTTAGAAATGTG+TGG - chr1_3:66964965-66964984 None:intergenic 35.0%
! ACCACCTATTTTCTACAAAC+AGG + chr1_3:66964976-66964995 Msa0135340:intron 35.0%
ACCTGTTTGTAGAAAATAGG+TGG - chr1_3:66964980-66964999 None:intergenic 35.0%
AGCACCTGTTTGTAGAAAAT+AGG - chr1_3:66964983-66965002 None:intergenic 35.0%
GAGTGGAAATACTAGACATA+AGG - chr1_3:66965041-66965060 None:intergenic 35.0%
GGAATAAACTCAACGTATCA+AGG - chr1_3:66965084-66965103 None:intergenic 35.0%
TAGGCTGTAAAATGCCAATA+CGG - chr1_3:66965106-66965125 None:intergenic 35.0%
TGTTGTATGATACGGTTGAT+AGG - chr1_3:66965125-66965144 None:intergenic 35.0%
! CCCTTTTATATAGGAATCCA+AGG - chr1_3:66965475-66965494 None:intergenic 35.0%
TATAGCATTAGGGATTGAAC+GGG + chr1_3:66965528-66965547 Msa0135340:intron 35.0%
TGGACATATATTGACCTATG+TGG + chr1_3:66965568-66965587 Msa0135340:intron 35.0%
AGATTAGAGGAGAAGATTCA+CGG + chr1_3:66965642-66965661 Msa0135340:CDS 35.0%
CTCGCATAAGATATAACAGA+TGG - chr1_3:66965820-66965839 None:intergenic 35.0%
ATCTTATGCGAGTTTCAGAA+AGG + chr1_3:66965828-66965847 Msa0135340:CDS 35.0%
TCTTATGCGAGTTTCAGAAA+GGG + chr1_3:66965829-66965848 Msa0135340:CDS 35.0%
! TTTCAGAAAGGGGTTTTCAA+AGG + chr1_3:66965840-66965859 Msa0135340:CDS 35.0%
TTCTTCTTTGATCATCTGCA+GGG - chr1_3:66965895-66965914 None:intergenic 35.0%
ATTCTTCTTTGATCATCTGC+AGG - chr1_3:66965896-66965915 None:intergenic 35.0%
TTACGAAGATGCATTTACCA+TGG - chr1_3:66965931-66965950 None:intergenic 35.0%
AGGATTGAGGAAAATACAAC+TGG - chr1_3:66966199-66966218 None:intergenic 35.0%
!!! TTTCCTTTTGATTTCAGCAG+AGG + chr1_3:66966446-66966465 Msa0135340:intron 35.0%
TTTCCTCTGCTGAAATCAAA+AGG - chr1_3:66966452-66966471 None:intergenic 35.0%
!! GAGGAAAATGTTGTTTCCTT+TGG + chr1_3:66966465-66966484 Msa0135340:intron 35.0%
AAAAGGGTTGACATAACCAA+AGG - chr1_3:66966484-66966503 None:intergenic 35.0%
AGGTCATATCAGTGCAAAAA+GGG - chr1_3:66966500-66966519 None:intergenic 35.0%
AAGGTCATATCAGTGCAAAA+AGG - chr1_3:66966501-66966520 None:intergenic 35.0%
! ATGATATTTGTTGACTGCTG+TGG + chr1_3:66966667-66966686 Msa0135340:intron 35.0%
! AAATTCTTATGCAGGTTGGA+AGG - chr1_3:66966848-66966867 None:intergenic 35.0%
TTCCAACCTGCATAAGAATT+TGG + chr1_3:66966847-66966866 Msa0135340:intron 35.0%
TCCAACCTGCATAAGAATTT+GGG + chr1_3:66966848-66966867 Msa0135340:intron 35.0%
GTCTAAGTAATTATGGAGTG+AGG + chr1_3:66966899-66966918 Msa0135340:intron 35.0%
AGTTGACATGTACTGTTAAC+CGG + chr1_3:66967112-66967131 Msa0135340:intron 35.0%
TGCTCATAGAATTTGTCTAC+TGG + chr1_3:66967171-66967190 Msa0135340:CDS 35.0%
!! CAATGTTTGATGGTGGTTAT+AGG + chr1_3:66967215-66967234 Msa0135340:CDS 35.0%
! TGCAGTATGCTTATTTCTTG+GGG - chr1_3:66967299-66967318 None:intergenic 35.0%
! CTTGCAGTATGCTTATTTCT+TGG - chr1_3:66967301-66967320 None:intergenic 35.0%
AGTTTGCAGTAAAAGTTGTC+AGG - chr1_3:66967450-66967469 None:intergenic 35.0%
! GACAACTTTTACTGCAAACT+TGG + chr1_3:66967450-66967469 Msa0135340:intron 35.0%
GCGTCCAGATTTATATATAC+TGG + chr1_3:66967747-66967766 Msa0135340:intron 35.0%
AGCTAGGAAAATTGGTTGTA+TGG + chr1_3:66967876-66967895 Msa0135340:intron 35.0%
TGTCTCTCAGGATATATTAC+TGG + chr1_3:66967988-66968007 Msa0135340:intron 35.0%
! CCTCAATGATAATGCATTGA+AGG - chr1_3:66968047-66968066 None:intergenic 35.0%
CCTTCAATGCATTATCATTG+AGG + chr1_3:66968044-66968063 Msa0135340:CDS 35.0%
CCAACATCGAATAGAATTGA+GGG - chr1_3:66968140-66968159 None:intergenic 35.0%
TCCAACATCGAATAGAATTG+AGG - chr1_3:66968141-66968160 None:intergenic 35.0%
!!! TTTCTAGTTCTTTTTGGGTG+AGG + chr1_3:66968292-66968311 Msa0135340:intron 35.0%
CACGATATAATAAGTCGCTA+TGG - chr1_3:66968375-66968394 None:intergenic 35.0%
TACATTCTGTACATCGCAAT+TGG - chr1_3:66968749-66968768 None:intergenic 35.0%
!! GTTATTTCTTGTGTTGTACC+AGG + chr1_3:66968772-66968791 Msa0135340:three_prime_UTR 35.0%
AATGATGCTAGAGACAGAAA+GGG - chr1_3:66968907-66968926 None:intergenic 35.0%
TAATGATGCTAGAGACAGAA+AGG - chr1_3:66968908-66968927 None:intergenic 35.0%
TAAAATGCGTAGAGAAAAGG+AGG + chr1_3:66969264-66969283 Msa0135340:three_prime_UTR 35.0%
TCTTATTCTTCCTCTCTACT+GGG - chr1_3:66969307-66969326 None:intergenic 35.0%
AGTAGAGAGGAAGAATAAGA+GGG + chr1_3:66969307-66969326 Msa0135340:three_prime_UTR 35.0%
TTTACCATTCTTCGCGAGAT+CGG - chr1_3:66960426-66960445 None:intergenic 40.0%
CAAGCGCAATTCAACAAGAT+CGG - chr1_3:66960458-66960477 None:intergenic 40.0%
!! ACTGGTGATTTTGTTTGCAG+AGG + chr1_3:66960502-66960521 Msa0135340:intron 40.0%
!! GATTTTGTTTGCAGAGGAAG+TGG + chr1_3:66960508-66960527 Msa0135340:intron 40.0%
TTCTGAACGCAATCAGTAAC+AGG - chr1_3:66960593-66960612 None:intergenic 40.0%
TGGGAGGAAAAGTAGCATAT+TGG + chr1_3:66960887-66960906 Msa0135340:intron 40.0%
GTTGTATTCAAGAGGGTGAA+TGG + chr1_3:66961191-66961210 Msa0135340:intron 40.0%
AAAACTGAAAGTCCTGACAG+TGG - chr1_3:66961239-66961258 None:intergenic 40.0%
CATTAGTGATCTATCCTCTC+TGG - chr1_3:66961301-66961320 None:intergenic 40.0%
CTTCTACTCAAACAGTGGTT+TGG + chr1_3:66961497-66961516 Msa0135340:intron 40.0%
TAAATCACAGTGATGAGCCA+AGG + chr1_3:66961626-66961645 Msa0135340:intron 40.0%
ACTGTATATGGTCACTTCCT+TGG - chr1_3:66961646-66961665 None:intergenic 40.0%
GCTTGATGCAGTATGTCTTA+TGG - chr1_3:66961764-66961783 None:intergenic 40.0%
AAAAACATATCGGGTTTGGG+TGG + chr1_3:66961917-66961936 Msa0135340:intron 40.0%
TTCGCTTGGTTAATTGACCA+TGG - chr1_3:66962067-66962086 None:intergenic 40.0%
CAACAACTAATTGTGGACAG+TGG + chr1_3:66962500-66962519 Msa0135340:CDS 40.0%
GCAACATTAAAACCCATGTC+AGG + chr1_3:66962642-66962661 Msa0135340:CDS 40.0%
! GATTTTCTGTGTAGGATGGA+AGG + chr1_3:66962729-66962748 Msa0135340:intron 40.0%
!! GCTGGAATTTGCTGATACAA+AGG + chr1_3:66962776-66962795 Msa0135340:CDS 40.0%
GAGCATCACATTCAACAATC+TGG - chr1_3:66962935-66962954 None:intergenic 40.0%
!! GTATTACAGGTTGGTGTGAT+CGG + chr1_3:66963109-66963128 Msa0135340:intron 40.0%
GGTGCTTTACAACCAGTTAT+TGG + chr1_3:66963181-66963200 Msa0135340:CDS 40.0%
GAAGGGGAAATGCAATAGAA+TGG - chr1_3:66963252-66963271 None:intergenic 40.0%
AAATTCAAGATACGGGGAGA+GGG - chr1_3:66963274-66963293 None:intergenic 40.0%
GGATAAACTTCACAACCAGA+AGG + chr1_3:66963477-66963496 Msa0135340:intron 40.0%
GGTAAAGAGAGAGTTAAGCT+GGG + chr1_3:66963606-66963625 Msa0135340:intron 40.0%
AATGTATGATGCACCATCAC+AGG - chr1_3:66963856-66963875 None:intergenic 40.0%
TATGGTAAGAACTGTGAGCA+AGG - chr1_3:66963885-66963904 None:intergenic 40.0%
TAGGTTCACATTGTACAGAG+AGG + chr1_3:66963923-66963942 Msa0135340:intron 40.0%
!! GACGAAAGCATCTCTATCAA+AGG - chr1_3:66963959-66963978 None:intergenic 40.0%
AGAAATGTCTGCCTTTGCAT+TGG + chr1_3:66963997-66964016 Msa0135340:CDS 40.0%
GAAATGTCTGCCTTTGCATT+GGG + chr1_3:66963998-66964017 Msa0135340:CDS 40.0%
AAATGTCTGCCTTTGCATTG+GGG + chr1_3:66963999-66964018 Msa0135340:CDS 40.0%
GGTTATGTGTGTCCTGAAAT+TGG - chr1_3:66964406-66964425 None:intergenic 40.0%
ATCATACCTCATTCTCTGCA+AGG - chr1_3:66964529-66964548 None:intergenic 40.0%
CAGAAGATGTCCACTTCATT+CGG - chr1_3:66964564-66964583 None:intergenic 40.0%
!! TCTCCCGAACGTTGTTTTAT+AGG + chr1_3:66964800-66964819 Msa0135340:intron 40.0%
!! GGCTTTAAGAGTAAATAGGG+GGG + chr1_3:66964821-66964840 Msa0135340:intron 40.0%
AGAATGTTGTGTTGGATGAG+TGG - chr1_3:66965058-66965077 None:intergenic 40.0%
CAAGGATGAGAATGTTGTGT+TGG - chr1_3:66965066-66965085 None:intergenic 40.0%
CGTTGAGTTTATTCCCGTAT+TGG + chr1_3:66965089-66965108 Msa0135340:intron 40.0%
AGGCTGTAAAATGCCAATAC+GGG - chr1_3:66965105-66965124 None:intergenic 40.0%
AAGATACAGCTCGTGTGAAA+GGG - chr1_3:66965180-66965199 None:intergenic 40.0%
AAAGATACAGCTCGTGTGAA+AGG - chr1_3:66965181-66965200 None:intergenic 40.0%
AATCCGACACATTATCCTGT+GGG - chr1_3:66965343-66965362 None:intergenic 40.0%
AAATCCGACACATTATCCTG+TGG - chr1_3:66965344-66965363 None:intergenic 40.0%
GGAGTTCAAAGACTACAAGA+AGG + chr1_3:66965377-66965396 Msa0135340:CDS 40.0%
!! AGGCTTTCTGCTTTTATCCT+TGG + chr1_3:66965455-66965474 Msa0135340:intron 40.0%
ATAGCATTAGGGATTGAACG+GGG + chr1_3:66965529-66965548 Msa0135340:intron 40.0%
GTGGATATGGTTTCTATTGC+AGG + chr1_3:66965587-66965606 Msa0135340:intron 40.0%
CTTATGCGAGTTTCAGAAAG+GGG + chr1_3:66965830-66965849 Msa0135340:CDS 40.0%
! TTTTCAAAGGCGAATTGCGT+TGG + chr1_3:66965853-66965872 Msa0135340:CDS 40.0%
AGTTAAGCATCTGTCCATGT+AGG + chr1_3:66966022-66966041 Msa0135340:intron 40.0%
TAAGCAACTCAAGACCTACA+TGG - chr1_3:66966039-66966058 None:intergenic 40.0%
CAGAAAGATTGTGAGGATTG+AGG - chr1_3:66966212-66966231 None:intergenic 40.0%
GGGGTCTTTATGATGTGAAT+AGG + chr1_3:66966254-66966273 Msa0135340:intron 40.0%
GGGGTCTTTATGATGTCAAT+AGG + chr1_3:66966383-66966402 Msa0135340:intron 40.0%
ATGTCGTGTATAGTAGTGAG+TGG + chr1_3:66966602-66966621 Msa0135340:intron 40.0%
ACCCAAATTCTTATGCAGGT+TGG - chr1_3:66966852-66966871 None:intergenic 40.0%
AGACAAAGCGAGATTGAAGA+GGG - chr1_3:66966883-66966902 None:intergenic 40.0%
TAGACAAAGCGAGATTGAAG+AGG - chr1_3:66966884-66966903 None:intergenic 40.0%
GCATTTCGTGCAATGTTTGA+TGG + chr1_3:66967205-66967224 Msa0135340:CDS 40.0%
TTTCGTGCAATGTTTGATGG+TGG + chr1_3:66967208-66967227 Msa0135340:CDS 40.0%
! GCAGTATGCTTATTTCTTGG+GGG - chr1_3:66967298-66967317 None:intergenic 40.0%
TTGCAGTAAAAGTTGTCAGG+AGG - chr1_3:66967447-66967466 None:intergenic 40.0%
AACTTGGCTGTTGTGTTGAA+TGG + chr1_3:66967466-66967485 Msa0135340:intron 40.0%
AGAAGGTCTTGAGCAATATC+TGG - chr1_3:66967789-66967808 None:intergenic 40.0%
! AGGCACCCATTTTACAAACA+TGG - chr1_3:66967952-66967971 None:intergenic 40.0%
ATCCTGAGAGACAAGAACAT+CGG - chr1_3:66967981-66968000 None:intergenic 40.0%
CCCTCAATTCTATTCGATGT+TGG + chr1_3:66968137-66968156 Msa0135340:intron 40.0%
! AGACAGAGCACTACTAAACA+AGG - chr1_3:66968191-66968210 None:intergenic 40.0%
!!! TAGTTCTTTTTGGGTGAGGA+GGG + chr1_3:66968296-66968315 Msa0135340:intron 40.0%
TCTTCAGCTTCTTGATTGTG+TGG + chr1_3:66968590-66968609 Msa0135340:intron 40.0%
ACAAAGTAATTGCGGATCTC+TGG - chr1_3:66968660-66968679 None:intergenic 40.0%
AGATTACAGTCTATGGGAGT+TGG - chr1_3:66968700-66968719 None:intergenic 40.0%
CACTGCAGATTACAGTCTAT+GGG - chr1_3:66968706-66968725 None:intergenic 40.0%
TCACTGCAGATTACAGTCTA+TGG - chr1_3:66968707-66968726 None:intergenic 40.0%
TGTACATCGCAATTGGTTAG+AGG - chr1_3:66968742-66968761 None:intergenic 40.0%
TTTCTTGTGTTGTACCAGGA+AGG + chr1_3:66968776-66968795 Msa0135340:three_prime_UTR 40.0%
TTCTTGTGTTGTACCAGGAA+GGG + chr1_3:66968777-66968796 Msa0135340:three_prime_UTR 40.0%
AGTCGACCTGTATACCATAA+AGG - chr1_3:66968808-66968827 None:intergenic 40.0%
ATGATGCTAGAGACAGAAAG+GGG - chr1_3:66968906-66968925 None:intergenic 40.0%
TGTCAGACGACAGGAATTAA+CGG - chr1_3:66969096-66969115 None:intergenic 40.0%
TTAATTCCTGTCGTCTGACA+TGG + chr1_3:66969096-66969115 Msa0135340:three_prime_UTR 40.0%
! AAAGGTGTACCATAGGTCTA+CGG + chr1_3:66969227-66969246 Msa0135340:three_prime_UTR 40.0%
AGATATGTTCCGTAGACCTA+TGG - chr1_3:66969239-66969258 None:intergenic 40.0%
CTCTTATTCTTCCTCTCTAC+TGG - chr1_3:66969308-66969327 None:intergenic 40.0%
CAGTAGAGAGGAAGAATAAG+AGG + chr1_3:66969306-66969325 Msa0135340:three_prime_UTR 40.0%
GTAGAGAGGAAGAATAAGAG+GGG + chr1_3:66969308-66969327 Msa0135340:three_prime_UTR 40.0%
TGGCGCTATGGTTAACAGAA+TGG - chr1_3:66960133-66960152 None:intergenic 45.0%
!! AAGAAGAGTGTGGTGTTGGT+TGG - chr1_3:66960153-66960172 None:intergenic 45.0%
AAGAAGGGTGAAGAAGAGTG+TGG - chr1_3:66960163-66960182 None:intergenic 45.0%
CCATGAACGAGAGAGAAGAA+GGG - chr1_3:66960178-66960197 None:intergenic 45.0%
TCCATGAACGAGAGAGAAGA+AGG - chr1_3:66960179-66960198 None:intergenic 45.0%
TCTCGTCGAAGTTGCTAATC+AGG + chr1_3:66960325-66960344 Msa0135340:CDS 45.0%
CGTGAAAGTAGACTCGAGAA+CGG - chr1_3:66960354-66960373 None:intergenic 45.0%
TTCTCGAGTCTACTTTCACG+TGG + chr1_3:66960354-66960373 Msa0135340:CDS 45.0%
GGAAGTGGTGAATGTGATTG+TGG + chr1_3:66960523-66960542 Msa0135340:CDS 45.0%
GTGGTGAATGTGATTGTGGA+AGG + chr1_3:66960527-66960546 Msa0135340:CDS 45.0%
GTGAATGTGATTGTGGAAGG+AGG + chr1_3:66960530-66960549 Msa0135340:CDS 45.0%
TGAACGCAATCAGTAACAGG+CGG - chr1_3:66960590-66960609 None:intergenic 45.0%
ACTTCATGCTCAAACGGCAA+CGG - chr1_3:66960617-66960636 None:intergenic 45.0%
!! AAAGGGAGTGCTTTCGCATT+AGG + chr1_3:66960641-66960660 Msa0135340:CDS 45.0%
ATTAGGACTTCTCGCAGTCA+AGG + chr1_3:66960658-66960677 Msa0135340:CDS 45.0%
AGTTGGCATATTAGAGTGGG+AGG + chr1_3:66960871-66960890 Msa0135340:intron 45.0%
AATGATTCGTAGCAACCAGC+AGG - chr1_3:66961788-66961807 None:intergenic 45.0%
! GAGAGAGTAAGTGCCTTGTT+CGG - chr1_3:66961835-66961854 None:intergenic 45.0%
AAGTGACAAGGTCCTCATCA+TGG - chr1_3:66962363-66962382 None:intergenic 45.0%
ATGAGAGGCAAACCTGACAT+GGG - chr1_3:66962657-66962676 None:intergenic 45.0%
TTTCTGTGTAGGATGGAAGG+TGG + chr1_3:66962732-66962751 Msa0135340:intron 45.0%
TCCACCACTTGTTCATTTGC+TGG + chr1_3:66962758-66962777 Msa0135340:CDS 45.0%
TCCAGCAAATGAACAAGTGG+TGG - chr1_3:66962762-66962781 None:intergenic 45.0%
CGCAGCATTAGAATCAGAGT+CGG - chr1_3:66962960-66962979 None:intergenic 45.0%
! GCTCTGGACTCAATTATTGC+CGG + chr1_3:66963224-66963243 Msa0135340:intron 45.0%
CTCTGGACTCAATTATTGCC+GGG + chr1_3:66963225-66963244 Msa0135340:intron 45.0%
GAAATGCAATAGAATGGGCC+CGG - chr1_3:66963246-66963265 None:intergenic 45.0%
CAAATTCAAGATACGGGGAG+AGG - chr1_3:66963275-66963294 None:intergenic 45.0%
!! AGCTACTGATTCAGACTGCA+AGG + chr1_3:66963451-66963470 Msa0135340:CDS 45.0%
CTGATTCAGACTGCAAGGTA+AGG + chr1_3:66963456-66963475 Msa0135340:intron 45.0%
TTCACAACCAGAAGGGATAG+TGG + chr1_3:66963485-66963504 Msa0135340:intron 45.0%
GGGTAAAGAGAGAGTTAAGC+TGG + chr1_3:66963605-66963624 Msa0135340:intron 45.0%
!! TATAGGTGCTACTCCTGTGA+TGG + chr1_3:66963840-66963859 Msa0135340:intron 45.0%
TTCTTACCATACGTTCCACC+TGG + chr1_3:66963894-66963913 Msa0135340:intron 45.0%
AACAAACCAGGTGGAACGTA+TGG - chr1_3:66963903-66963922 None:intergenic 45.0%
!! ACGTTCCACCTGGTTTGTTT+AGG + chr1_3:66963904-66963923 Msa0135340:intron 45.0%
GTGAACCTAAACAAACCAGG+TGG - chr1_3:66963912-66963931 None:intergenic 45.0%
ACAGAAGGAAGAGAAGATGG+AGG - chr1_3:66964178-66964197 None:intergenic 45.0%
CATTGTGTGCAATACCAGCT+TGG - chr1_3:66964427-66964446 None:intergenic 45.0%
CAAGCTGGTATTGCACACAA+TGG + chr1_3:66964425-66964444 Msa0135340:CDS 45.0%
GAGTCAAGAAGCTTGAGAAG+TGG - chr1_3:66964461-66964480 None:intergenic 45.0%
! TTATGGCCTTGCAGAGAATG+AGG + chr1_3:66964520-66964539 Msa0135340:CDS 45.0%
AAGCAGGGTAGTTGAAATGG+AGG - chr1_3:66965229-66965248 None:intergenic 45.0%
TCCATTTCAACTACCCTGCT+TGG + chr1_3:66965228-66965247 Msa0135340:intron 45.0%
TCCAAGCAGGGTAGTTGAAA+TGG - chr1_3:66965232-66965251 None:intergenic 45.0%
TTCCCCACAGGATAATGTGT+CGG + chr1_3:66965337-66965356 Msa0135340:intron 45.0%
ATCCGACACATTATCCTGTG+GGG - chr1_3:66965342-66965361 None:intergenic 45.0%
GTGTCGGATTTCATTAGGGT+AGG + chr1_3:66965353-66965372 Msa0135340:CDS 45.0%
TCGGATTTCATTAGGGTAGG+TGG + chr1_3:66965356-66965375 Msa0135340:CDS 45.0%
!! ATCAAGTTGCTGTTTGGAGC+TGG - chr1_3:66966080-66966099 None:intergenic 45.0%
AGCTCCAAACAGCAACTTGA+TGG + chr1_3:66966079-66966098 Msa0135340:CDS 45.0%
! AGCACCATCAAGTTGCTGTT+TGG - chr1_3:66966086-66966105 None:intergenic 45.0%
! CAAGTTGGCCAATAAAGCCT+CGG + chr1_3:66966117-66966136 Msa0135340:CDS 45.0%
AGTAGTGAGTGGTCGATACA+AGG + chr1_3:66966613-66966632 Msa0135340:intron 45.0%
CAGCACCCAAATTCTTATGC+AGG - chr1_3:66966856-66966875 None:intergenic 45.0%
!! TGGAGTGAGGTTCTAAAAGC+TGG + chr1_3:66966912-66966931 Msa0135340:intron 45.0%
TTCTTGGGGGAGCTTCTTTA+GGG - chr1_3:66967285-66967304 None:intergenic 45.0%
TTTCTTGGGGGAGCTTCTTT+AGG - chr1_3:66967286-66967305 None:intergenic 45.0%
TGCATTTGCATGACAGGAGA+AGG + chr1_3:66967582-66967601 Msa0135340:intron 45.0%
ATGACAGGAGAAGGATGCAA+GGG + chr1_3:66967591-66967610 Msa0135340:intron 45.0%
ATTGATCAGCTGCTCGAAGA+AGG - chr1_3:66967806-66967825 None:intergenic 45.0%
CTGTGAGTACACAATTGCAC+AGG + chr1_3:66967851-66967870 Msa0135340:CDS 45.0%
CACAGGTGAGCTAGGAAAAT+TGG + chr1_3:66967868-66967887 Msa0135340:intron 45.0%
TCCTGAGAGACAAGAACATC+GGG - chr1_3:66967980-66967999 None:intergenic 45.0%
! ACTTTGATAAGTTGAGCGCG+AGG + chr1_3:66968095-66968114 Msa0135340:CDS 45.0%
!!! CTAGTTCTTTTTGGGTGAGG+AGG + chr1_3:66968295-66968314 Msa0135340:intron 45.0%
TGACTGTAGAAACCAACCTC+TGG + chr1_3:66968465-66968484 Msa0135340:intron 45.0%
! CTCTGGTTAGCTGAATGGTT+CGG + chr1_3:66968482-66968501 Msa0135340:intron 45.0%
!! AGAGAGTGCCTGCAAACAAT+CGG - chr1_3:66968618-66968637 None:intergenic 45.0%
TCTTGTGTTGTACCAGGAAG+GGG + chr1_3:66968778-66968797 Msa0135340:three_prime_UTR 45.0%
GGGTCTCCTTTATGGTATAC+AGG + chr1_3:66968799-66968818 Msa0135340:three_prime_UTR 45.0%
AGAGAACATGCACTACTCTC+CGG - chr1_3:66968848-66968867 None:intergenic 45.0%
! AAGAATAAGAGGGGTGCAGT+TGG + chr1_3:66969317-66969336 Msa0135340:three_prime_UTR 45.0%
! GGTGAAGAAGAGTGTGGTGT+TGG - chr1_3:66960157-66960176 None:intergenic 50.0%
CCCTTCTTCTCTCTCGTTCA+TGG + chr1_3:66960175-66960194 Msa0135340:exon 50.0%
ATGGAGTTTCAGAGACGCCA+AGG + chr1_3:66960194-66960213 Msa0135340:CDS 50.0%
! ACGTTTTTGCCCCTTCCTCT+CGG - chr1_3:66960231-66960250 None:intergenic 50.0%
ATACTGCATCAAGCACCTGC+TGG + chr1_3:66961770-66961789 Msa0135340:intron 50.0%
!! GTGAGGGTGTCTCTTGCTAT+GGG + chr1_3:66962209-66962228 Msa0135340:intron 50.0%
TGCCAACATCCTCCATGATG+AGG + chr1_3:66962348-66962367 Msa0135340:intron 50.0%
GTCCTCATCATGGAGGATGT+TGG - chr1_3:66962353-66962372 None:intergenic 50.0%
TGACAAGGTCCTCATCATGG+AGG - chr1_3:66962360-66962379 None:intergenic 50.0%
CATGAGAGGCAAACCTGACA+TGG - chr1_3:66962658-66962677 None:intergenic 50.0%
AGGGAAGCGGCATTGTTACT+TGG + chr1_3:66963419-66963438 Msa0135340:CDS 50.0%
TGCCTTTGCATTGGGGAGAT+TGG + chr1_3:66964006-66964025 Msa0135340:CDS 50.0%
CAGGACACACATAACCAAGC+TGG + chr1_3:66964410-66964429 Msa0135340:intron 50.0%
GCTGGTATTGCACACAATGG+TGG + chr1_3:66964428-66964447 Msa0135340:CDS 50.0%
CAACCAAGCCGTGTCTCATT+AGG + chr1_3:66964598-66964617 Msa0135340:intron 50.0%
CAAGCCGTGTCTCATTAGGT+GGG + chr1_3:66964602-66964621 Msa0135340:intron 50.0%
CGATCCCACCTAATGAGACA+CGG - chr1_3:66964609-66964628 None:intergenic 50.0%
CGTGTCTCATTAGGTGGGAT+CGG + chr1_3:66964607-66964626 Msa0135340:intron 50.0%
ATTAGGTGGGATCGGCTATG+TGG + chr1_3:66964615-66964634 Msa0135340:intron 50.0%
!!! GCTTTTTTGGCCCTCCAAAG+CGG + chr1_3:66964722-66964741 Msa0135340:intron 50.0%
TTCGGGAGATATCTCCCGAA+GGG - chr1_3:66964789-66964808 None:intergenic 50.0%
AGCTCAATCGCTAGAGACAG+AGG - chr1_3:66964894-66964913 None:intergenic 50.0%
!! ACAGCAACTTGATGGTGCTG+CGG + chr1_3:66966087-66966106 Msa0135340:CDS 50.0%
! TGCTGCGGCTTTATGCAAGT+TGG + chr1_3:66966102-66966121 Msa0135340:CDS 50.0%
CTTGAACCTACCTGTGGTGT+TGG - chr1_3:66966175-66966194 None:intergenic 50.0%
ACTGGACTTGAACCTACCTG+TGG - chr1_3:66966181-66966200 None:intergenic 50.0%
! CTTATGCAGGTTGGAAGGCA+TGG - chr1_3:66966843-66966862 None:intergenic 50.0%
CATGACAGGAGAAGGATGCA+AGG + chr1_3:66967590-66967609 Msa0135340:intron 50.0%
CACAATTGCACAGGTGAGCT+AGG + chr1_3:66967860-66967879 Msa0135340:intron 50.0%
GACAAGAACATCGGGTCATG+AGG - chr1_3:66967972-66967991 None:intergenic 50.0%
ACCCGATGTTCTTGTCTCTC+AGG + chr1_3:66967976-66967995 Msa0135340:intron 50.0%
AGGGAATCAGATCGATACCC+TGG - chr1_3:66968121-66968140 None:intergenic 50.0%
!!! GTAGTTTTGGTGACCGACCT+TGG + chr1_3:66968222-66968241 Msa0135340:intron 50.0%
CCATTCAGCTAACCAGAGGT+TGG - chr1_3:66968480-66968499 None:intergenic 50.0%
! CCAACCTCTGGTTAGCTGAA+TGG + chr1_3:66968477-66968496 Msa0135340:intron 50.0%
CGAACCATTCAGCTAACCAG+AGG - chr1_3:66968484-66968503 None:intergenic 50.0%
CTTGTGTTGTACCAGGAAGG+GGG + chr1_3:66968779-66968798 Msa0135340:three_prime_UTR 50.0%
ACTGCTGGGTAATTTAGGCC+AGG + chr1_3:66969070-66969089 Msa0135340:three_prime_UTR 50.0%
ACAGTTCCATGTCAGACGAC+AGG - chr1_3:66969105-66969124 None:intergenic 50.0%
TACTATACTCGTACGGCCCA+AGG + chr1_3:66969144-66969163 Msa0135340:three_prime_UTR 50.0%
ACTTTCTGCACCCAGTAGAG+AGG + chr1_3:66969294-66969313 Msa0135340:three_prime_UTR 50.0%
!! TGTGGTGTTGGTTGGCGCTA+TGG - chr1_3:66960145-66960164 None:intergenic 55.0%
GACGAGATCTGACGGTCTTC+CGG - chr1_3:66960272-66960291 None:intergenic 55.0%
GGAAGACCGTCAGATCTCGT+CGG + chr1_3:66960271-66960290 Msa0135340:CDS 55.0%
GAATGAAGACGATCGAGCCG+CGG + chr1_3:66960376-66960395 Msa0135340:CDS 55.0%
ATGAGTAGCACGCTTAGCCG+CGG - chr1_3:66960396-66960415 None:intergenic 55.0%
! TGTGGAAGGAGGTGCGATTC+CGG + chr1_3:66960541-66960560 Msa0135340:CDS 55.0%
! GGTGGTCTGGTCTGAGACTA+CGG + chr1_3:66962187-66962206 Msa0135340:intron 55.0%
! TCTGGTCTGAGACTACGGTG+AGG + chr1_3:66962192-66962211 Msa0135340:intron 55.0%
! CTGGTCTGAGACTACGGTGA+GGG + chr1_3:66962193-66962212 Msa0135340:intron 55.0%
!! GGTGAGGGTGTCTCTTGCTA+TGG + chr1_3:66962208-66962227 Msa0135340:intron 55.0%
AAGGTGCAAAGAGCAGCTGC+TGG + chr1_3:66962795-66962814 Msa0135340:CDS 55.0%
AAGATACGGGGAGAGGGAAG+GGG - chr1_3:66963268-66963287 None:intergenic 55.0%
CAAGATACGGGGAGAGGGAA+GGG - chr1_3:66963269-66963288 None:intergenic 55.0%
TCAAGATACGGGGAGAGGGA+AGG - chr1_3:66963270-66963289 None:intergenic 55.0%
ACGCTGCCCTGAAAGTCAGA+GGG + chr1_3:66963400-66963419 Msa0135340:CDS 55.0%
CCGCTTCCCTCTGACTTTCA+GGG - chr1_3:66963409-66963428 None:intergenic 55.0%
CCCTGAAAGTCAGAGGGAAG+CGG + chr1_3:66963406-66963425 Msa0135340:CDS 55.0%
GGCCAATCTCCCCAATGCAA+AGG - chr1_3:66964011-66964030 None:intergenic 55.0%
CCACCTAATGAGACACGGCT+TGG - chr1_3:66964604-66964623 None:intergenic 55.0%
CCAAGCCGTGTCTCATTAGG+TGG + chr1_3:66964601-66964620 Msa0135340:intron 55.0%
GTTCGGGAGATATCTCCCGA+AGG - chr1_3:66964790-66964809 None:intergenic 55.0%
! AGACAGGGCCGAGGCTTTAT+TGG - chr1_3:66966128-66966147 None:intergenic 55.0%
! TGGTGTTGGAGAAGGAGGAG+CGG - chr1_3:66966161-66966180 None:intergenic 55.0%
TCCTCCTTCTCCAACACCAC+AGG + chr1_3:66966162-66966181 Msa0135340:CDS 55.0%
! ACCTGTGGTGTTGGAGAAGG+AGG - chr1_3:66966166-66966185 None:intergenic 55.0%
! CCTACCTGTGGTGTTGGAGA+AGG - chr1_3:66966169-66966188 None:intergenic 55.0%
CCTTCTCCAACACCACAGGT+AGG + chr1_3:66966166-66966185 Msa0135340:intron 55.0%
! GGGGGAGCTTCTTTAGGGAA+GGG - chr1_3:66967280-66967299 None:intergenic 55.0%
! TGGGGGAGCTTCTTTAGGGA+AGG - chr1_3:66967281-66967300 None:intergenic 55.0%
! ATAAGTTGAGCGCGAGGCCA+GGG + chr1_3:66968101-66968120 Msa0135340:CDS 55.0%
!! GTGTGGCACCGATTGTTTGC+AGG + chr1_3:66968607-66968626 Msa0135340:intron 55.0%
CATAAAGGAGACCCCCTTCC+TGG - chr1_3:66968793-66968812 None:intergenic 55.0%
CAGGAAGGGGGTCTCCTTTA+TGG + chr1_3:66968791-66968810 Msa0135340:three_prime_UTR 55.0%
GACGACAGGAATTAACGGCC+TGG - chr1_3:66969091-66969110 None:intergenic 55.0%
TGACACCAGCAGCATGCCTT+GGG - chr1_3:66969163-66969182 None:intergenic 55.0%
TCTCGGAGAGGCAGTGACCT+TGG - chr1_3:66960214-66960233 None:intergenic 60.0%
AAGGTCACTGCCTCTCCGAG+AGG + chr1_3:66960213-66960232 Msa0135340:CDS 60.0%
TCACTGCCTCTCCGAGAGGA+AGG + chr1_3:66960217-66960236 Msa0135340:CDS 60.0%
CACTGCCTCTCCGAGAGGAA+GGG + chr1_3:66960218-66960237 Msa0135340:CDS 60.0%
ACTGCCTCTCCGAGAGGAAG+GGG + chr1_3:66960219-66960238 Msa0135340:CDS 60.0%
TTTGCCCCTTCCTCTCGGAG+AGG - chr1_3:66960226-66960245 None:intergenic 60.0%
!! GAGAAGTGCCGCACGTTCGT+CGG - chr1_3:66960309-66960328 None:intergenic 60.0%
CTCGCCGATCTCGCGAAGAA+TGG + chr1_3:66960419-66960438 Msa0135340:CDS 60.0%
CACGCTGCCCTGAAAGTCAG+AGG + chr1_3:66963399-66963418 Msa0135340:CDS 60.0%
GCCGCTTCCCTCTGACTTTC+AGG - chr1_3:66963410-66963429 None:intergenic 60.0%
! TGCATTGGGGAGATTGGCCC+AGG + chr1_3:66964012-66964031 Msa0135340:CDS 60.0%
AGCGGCGTCTACAGGAGACA+GGG - chr1_3:66966143-66966162 None:intergenic 60.0%
! GATAAGTTGAGCGCGAGGCC+AGG + chr1_3:66968100-66968119 Msa0135340:CDS 60.0%
GTGACACCAGCAGCATGCCT+TGG - chr1_3:66969164-66969183 None:intergenic 60.0%
!! GCGGTGCCGACGAGATCTGA+CGG - chr1_3:66960280-66960299 None:intergenic 65.0%
! AAGTGCCGCACGTTCGTCGG+CGG - chr1_3:66960306-66960325 None:intergenic 65.0%
GTCTACAGGAGACAGGGCCG+AGG - chr1_3:66966137-66966156 None:intergenic 65.0%
GAGCGGCGTCTACAGGAGAC+AGG - chr1_3:66966144-66966163 None:intergenic 65.0%
GAAGGAGGAGCGGCGTCTAC+AGG - chr1_3:66966151-66966170 None:intergenic 65.0%
TACGGCCCAAGGCATGCTGC+TGG + chr1_3:66969155-66969174 Msa0135340:three_prime_UTR 65.0%
GCACGTTCGTCGGCGGTAGG+CGG - chr1_3:66960299-66960318 None:intergenic 70.0%
GCCTACCGCCGACGAACGTG+CGG + chr1_3:66960298-66960317 Msa0135340:CDS 70.0%
GCCGCACGTTCGTCGGCGGT+AGG - chr1_3:66960302-66960321 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 66960047 66969342 66960047 ID=Msa0135340;Name=Msa0135340
chr1_3 mRNA 66960047 66969342 66960047 ID=Msa0135340-mRNA-1;Parent=Msa0135340;Name=Msa0135340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=147|1|1|1|1|1|19|626|704
chr1_3 exon 66960047 66960440 66960047 ID=Msa0135340-mRNA-1:exon:22893;Parent=Msa0135340-mRNA-1
chr1_3 exon 66960522 66960679 66960522 ID=Msa0135340-mRNA-1:exon:22894;Parent=Msa0135340-mRNA-1
chr1_3 exon 66962491 66962663 66962491 ID=Msa0135340-mRNA-1:exon:22895;Parent=Msa0135340-mRNA-1
chr1_3 exon 66962743 66962863 66962743 ID=Msa0135340-mRNA-1:exon:22896;Parent=Msa0135340-mRNA-1
chr1_3 exon 66962936 66963010 66962936 ID=Msa0135340-mRNA-1:exon:22897;Parent=Msa0135340-mRNA-1
chr1_3 exon 66963118 66963212 66963118 ID=Msa0135340-mRNA-1:exon:22898;Parent=Msa0135340-mRNA-1
chr1_3 exon 66963397 66963472 66963397 ID=Msa0135340-mRNA-1:exon:22899;Parent=Msa0135340-mRNA-1
chr1_3 exon 66963926 66964033 66963926 ID=Msa0135340-mRNA-1:exon:22900;Parent=Msa0135340-mRNA-1
chr1_3 exon 66964413 66964541 66964413 ID=Msa0135340-mRNA-1:exon:22901;Parent=Msa0135340-mRNA-1
chr1_3 exon 66965347 66965415 66965347 ID=Msa0135340-mRNA-1:exon:22902;Parent=Msa0135340-mRNA-1
chr1_3 exon 66965609 66965668 66965609 ID=Msa0135340-mRNA-1:exon:22903;Parent=Msa0135340-mRNA-1
chr1_3 exon 66965809 66965932 66965809 ID=Msa0135340-mRNA-1:exon:22904;Parent=Msa0135340-mRNA-1
chr1_3 exon 66966044 66966183 66966044 ID=Msa0135340-mRNA-1:exon:22905;Parent=Msa0135340-mRNA-1
chr1_3 exon 66966968 66967031 66966968 ID=Msa0135340-mRNA-1:exon:22906;Parent=Msa0135340-mRNA-1
chr1_3 exon 66967158 66967237 66967158 ID=Msa0135340-mRNA-1:exon:22907;Parent=Msa0135340-mRNA-1
chr1_3 exon 66967598 66967662 66967598 ID=Msa0135340-mRNA-1:exon:22908;Parent=Msa0135340-mRNA-1
chr1_3 exon 66967755 66967872 66967755 ID=Msa0135340-mRNA-1:exon:22909;Parent=Msa0135340-mRNA-1
chr1_3 exon 66967998 66968122 66967998 ID=Msa0135340-mRNA-1:exon:22910;Parent=Msa0135340-mRNA-1
chr1_3 exon 66968629 66969342 66968629 ID=Msa0135340-mRNA-1:exon:22911;Parent=Msa0135340-mRNA-1
chr1_3 five_prime_UTR 66960047 66960193 66960047 ID=Msa0135340-mRNA-1:five_prime_utr;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66960194 66960440 66960194 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66960522 66960679 66960522 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66962491 66962663 66962491 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66962743 66962863 66962743 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66962936 66963010 66962936 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66963118 66963212 66963118 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66963397 66963472 66963397 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66963926 66964033 66963926 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66964413 66964541 66964413 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66965347 66965415 66965347 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66965609 66965668 66965609 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66965809 66965932 66965809 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66966044 66966183 66966044 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66966968 66967031 66966968 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66967158 66967237 66967158 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66967598 66967662 66967598 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66967755 66967872 66967755 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66967998 66968122 66967998 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 CDS 66968629 66968716 66968629 ID=Msa0135340-mRNA-1:cds;Parent=Msa0135340-mRNA-1
chr1_3 three_prime_UTR 66968717 66969342 66968717 ID=Msa0135340-mRNA-1:three_prime_utr;Parent=Msa0135340-mRNA-1
Gene Sequence

>Msa0135340

ATGGAGTTTCAGAGACGCCAAGGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGTAAGTTAGACGAAGAATTACCGGAAGACCGTCAGATCTCGTCGGCACCGCCTACCGCCGACGAACGTGCGGCACTTCTCGTCGAAGTTGCTAATCAGGTCACCGTTCTCGAGTCTACTTTCACGTGGAATGAAGACGATCGAGCCGCGGCTAAGCGTGCTACTCATGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAATGTGATTGTGGAAGGAGGTGCGATTCCGGCTTTGATTAAGCATCTTCAAGCACCGCCTGTTACTGATTGCGTTCAGAAGCCGTTGCCGTTTGAGCATGAAGTTGAGAAAGGGAGTGCTTTCGCATTAGGACTTCTCGCAGTCAAGCCGGAACATCAACAACTAATTGTGGACAGTGGTGCCTTAACACACCTTGTTGATCTTTTAAAGAGGCATAATAATGGTTTGACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTCGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTGGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACTCTAGCTTTTAAAAATGATGAAAATAAAATTCAGATTGTTGAATGTGATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATCGGAAATCTAGTTCACTCATCTCCGAATATAAAGAAAGAGGTTCTATTTGCTGGTGCTTTACAACCAGTTATTGGATTACTTAGCTCACGCTGCCCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTTGCAGCTACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTCCTGATGTACAACTTAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGTTTAGTGCCACTTCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCGGATTTCATTAGGGTAGGTGGAGTTCAAAGACTACAAGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGTTGAACCATCTGTTATATCTTATGCGAGTTTCAGAAAGGGGTTTTCAAAGGCGAATTGCGTTGGTTCTTGCACATCTTTGCCCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAGTTGCTTATCAGTCTTCTCAGCTCATCCAGCTCCAAACAGCAACTTGATGGTGCTGCGGCTTTATGCAAGTTGGCCAATAAAGCCTCGGCCCTGTCTCCTGTAGACGCCGCTCCTCCTTCTCCAACACCACAGGTTTACTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGCTTTTATGCTCATAGAATTTGTCTACTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATATCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGATGGACTGAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCATTATCATTGAGGCATGCATGCATTCTTTTTATCTTGGAGCACTTTGATAAGTTGAGCGCGAGGCCAGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAATGCCAACTCCCATAGACTGTAA
Protein sequence

>Msa0135340

MEFQRRQGHCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEDDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKIQIVECDALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSRCPESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSERGFQRRIALVLAHLCPADDQRRIFIEHHGLELLISLLSSSSSKQQLDGAAALCKLANKASALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDITPDIAQDLLRAADQYLLDGLKRLCEYTIAQDILLENVSSMYELSEAFNALSLRHACILFILEHFDKLSARPGHSLLIQRIIPEIRNYFVKALTNANSHRL*