AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0135810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135810 MtrunA17_Chr8g0355091 91.561 237 20 0 1 237 1 237 4.59e-162 447
Msa0135810 MtrunA17_Chr1g0206701 95.089 224 11 0 1 224 1 224 4.50e-160 442
Msa0135810 MtrunA17_Chr1g0206721 89.498 219 23 0 1 219 1 219 1.37e-147 411
Msa0135810 MtrunA17_Chr2g0292791 88.186 237 28 0 1 237 1 237 1.65e-147 410
Msa0135810 MtrunA17_Chr1g0149391 88.608 237 27 0 1 237 1 237 1.72e-144 403
Msa0135810 MtrunA17_Chr3g0099421 84.475 219 34 0 1 219 26 244 1.40e-140 394
Msa0135810 MtrunA17_Chr1g0206691 84.545 220 34 0 18 237 1 220 1.33e-138 387
Msa0135810 MtrunA17_Chr3g0099411 78.995 219 27 1 1 219 1 200 6.32e-122 345
Msa0135810 MtrunA17_Chr2g0300441 70.464 237 69 1 1 237 1 236 1.52e-118 337
Msa0135810 MtrunA17_Chr1g0206991 86.264 182 25 0 1 182 1 182 5.43e-116 329
Msa0135810 MtrunA17_Chr3g0089141 71.795 234 48 3 1 224 1 226 6.35e-115 328
Msa0135810 MtrunA17_Chr1g0208561 71.795 234 48 3 1 224 1 226 4.56e-114 326
Msa0135810 MtrunA17_Chr5g0422941 64.979 237 83 0 1 237 1 237 5.84e-114 326
Msa0135810 MtrunA17_Chr1g0188671 68.000 225 72 0 1 225 39 263 1.13e-112 324
Msa0135810 MtrunA17_Chr2g0325971 71.368 234 49 3 1 224 1 226 1.85e-112 322
Msa0135810 MtrunA17_Chr2g0317451 64.831 236 83 0 1 236 1 236 2.94e-112 322
Msa0135810 MtrunA17_Chr2g0317481 64.831 236 83 0 1 236 1 236 1.00e-111 320
Msa0135810 MtrunA17_Chr1g0187361 67.857 224 72 0 1 224 1 224 5.75e-110 316
Msa0135810 MtrunA17_Chr5g0419601 67.511 237 77 0 1 237 1 237 3.86e-109 313
Msa0135810 MtrunA17_Chr1g0208581 73.148 216 50 1 1 216 1 208 6.80e-109 313
Msa0135810 MtrunA17_Chr5g0422421 66.964 224 74 0 1 224 1 224 2.62e-108 311
Msa0135810 MtrunA17_Chr7g0238991 65.022 223 76 2 16 237 27 248 1.75e-98 287
Msa0135810 MtrunA17_Chr2g0300421 65.031 163 56 1 1 162 1 163 7.49e-68 206
Msa0135810 MtrunA17_Chr3g0085241 51.323 189 82 1 3 191 35 213 7.44e-66 204
Msa0135810 MtrunA17_Chr3g0119901 52.778 180 84 1 7 186 7 185 5.69e-65 200
Msa0135810 MtrunA17_Chr3g0089151 75.194 129 32 0 1 129 1 129 1.79e-64 196
Msa0135810 MtrunA17_Chr3g0111931 67.647 102 33 0 21 122 2 103 1.41e-45 147
Msa0135810 MtrunA17_Chr2g0333981 40.936 171 91 2 5 172 8 171 2.86e-41 139
Msa0135810 MtrunA17_Chr8g0379021 42.169 166 86 2 5 167 8 166 7.36e-41 138
Msa0135810 MtrunA17_Chr4g0018951 45.161 155 73 3 5 159 8 150 1.92e-35 124
Msa0135810 MtrunA17_Chr1g0187351 80.303 66 13 0 18 83 1 66 5.13e-33 114
Msa0135810 MtrunA17_Chr4g0071601 39.227 181 90 4 5 172 8 181 4.55e-32 115
Msa0135810 MtrunA17_Chr3g0111841 84.746 59 9 0 15 73 2 60 2.02e-30 107
Msa0135810 MtrunA17_Chr3g0111831 70.492 61 18 0 16 76 11 71 8.82e-25 94.0
Msa0135810 MtrunA17_Chr1g0175601 45.946 111 57 2 9 118 2 110 2.29e-24 95.5
Msa0135810 MtrunA17_Chr1g0169761 60.870 69 27 0 9 77 2 70 1.20e-23 93.6
Msa0135810 MtrunA17_Chr8g0376821 60.870 69 27 0 9 77 2 70 3.33e-23 92.4
Msa0135810 MtrunA17_Chr4g0074101 40.517 116 54 3 9 109 2 117 6.90e-23 92.0
Msa0135810 MtrunA17_Chr8g0357771 45.545 101 53 1 9 109 2 100 1.62e-22 90.9
Msa0135810 MtrunA17_Chr1g0180591 45.536 112 56 3 9 118 2 110 1.66e-22 90.5
Msa0135810 MtrunA17_Chr1g0175611 45.545 101 53 1 9 109 2 100 1.83e-22 90.1
Msa0135810 MtrunA17_Chr8g0356071 38.462 130 72 2 9 135 2 126 2.05e-21 87.4
Msa0135810 MtrunA17_Chr4g0052061 41.509 106 60 1 9 114 2 105 3.04e-20 84.0
Msa0135810 MtrunA17_Chr4g0049901 33.526 173 88 4 10 161 29 195 2.69e-19 83.6
Msa0135810 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 7.80e-19 82.0
Msa0135810 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 1.61e-18 81.6
Msa0135810 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 2.17e-18 79.7
Msa0135810 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 5.72e-18 79.3
Msa0135810 MtrunA17_Chr8g0351051 33.533 167 97 4 9 167 2 162 1.25e-17 79.3
Msa0135810 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.96e-17 78.2
Msa0135810 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 2.64e-17 77.4
Msa0135810 MtrunA17_Chr2g0284911 30.270 185 100 4 9 167 17 198 3.35e-17 78.2
Msa0135810 MtrunA17_Chr3g0134451 33.333 171 90 6 9 162 2 165 4.21e-17 79.0
Msa0135810 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 4.25e-17 75.9
Msa0135810 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 5.67e-17 77.4
Msa0135810 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.50e-16 75.9
Msa0135810 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.51e-16 76.3
Msa0135810 MtrunA17_Chr8g0345001 32.911 158 93 3 8 159 17 167 1.68e-16 74.7
Msa0135810 MtrunA17_Chr5g0412461 48.529 68 35 0 9 76 2 69 1.86e-16 75.5
Msa0135810 MtrunA17_Chr5g0412271 29.384 211 130 6 9 201 2 211 1.87e-16 75.5
Msa0135810 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.87e-16 76.3
Msa0135810 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 2.40e-16 75.1
Msa0135810 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 2.45e-16 75.1
Msa0135810 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 8.85e-16 74.3
Msa0135810 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 8.95e-16 73.6
Msa0135810 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 1.34e-15 73.6
Msa0135810 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.60e-15 73.2
Msa0135810 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.65e-15 73.6
Msa0135810 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 1.96e-15 72.8
Msa0135810 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.96e-15 68.9
Msa0135810 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 3.47e-15 72.4
Msa0135810 MtrunA17_Chr3g0093131 33.566 143 78 4 26 159 36 170 3.82e-15 71.2
Msa0135810 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 3.89e-15 72.0
Msa0135810 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 4.12e-15 68.9
Msa0135810 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 5.12e-15 68.2
Msa0135810 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 1.11e-14 70.5
Msa0135810 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.13e-14 68.2
Msa0135810 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 2.39e-14 67.0
Msa0135810 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 2.63e-14 70.1
Msa0135810 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 2.78e-14 70.1
Msa0135810 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 2.98e-14 68.6
Msa0135810 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 3.11e-14 69.3
Msa0135810 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 3.62e-14 69.3
Msa0135810 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 5.17e-14 68.2
Msa0135810 MtrunA17_Chr7g0246381 52.632 57 27 0 9 65 2 58 9.60e-14 64.3
Msa0135810 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 1.67e-13 63.5
Msa0135810 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.74e-13 67.4
Msa0135810 MtrunA17_Chr4g0025531 32.099 162 98 3 1 162 1 150 8.56e-13 65.9
Msa0135810 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 6.84e-12 61.2
Msa0135810 MtrunA17_Chr4g0060841 26.738 187 115 7 9 183 2 178 9.25e-12 63.9
Msa0135810 MtrunA17_Chr2g0302091 31.875 160 81 7 7 156 36 177 1.56e-11 61.6
Msa0135810 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 1.96e-11 61.2
Msa0135810 MtrunA17_Chr1g0166611 34.513 113 64 2 20 132 17 119 5.77e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135810 AT5G60440.1 47.541 244 111 5 5 233 3 244 7.87e-62 196
Msa0135810 AT2G24840.1 49.693 163 71 4 6 162 60 217 5.28e-44 149
Msa0135810 AT1G01530.1 40.952 210 101 4 4 192 2 209 6.35e-41 140
Msa0135810 AT1G65360.1 38.667 225 123 6 5 223 3 218 7.98e-40 137
Msa0135810 AT4G36590.1 45.732 164 79 4 5 160 3 164 2.11e-38 134
Msa0135810 AT2G34440.1 45.299 117 55 2 9 121 2 113 8.02e-27 102
Msa0135810 AT3G66656.1 41.985 131 71 2 9 134 2 132 8.36e-26 99.8
Msa0135810 AT3G04100.1 31.579 152 100 2 2 149 7 158 8.97e-25 97.8
Msa0135810 AT1G72350.1 35.374 147 62 3 9 155 43 156 6.35e-23 93.2
Msa0135810 AT1G28460.1 30.636 173 110 3 5 174 4 169 3.11e-20 85.1
Msa0135810 AT4G22950.2 49.351 77 39 0 10 86 3 79 3.88e-19 82.0
Msa0135810 AT4G09960.2 46.512 86 45 1 9 93 2 87 5.99e-19 82.4
Msa0135810 AT4G09960.6 46.512 86 45 1 9 93 3 88 7.28e-19 82.8
Msa0135810 AT4G09960.1 46.512 86 45 1 9 93 2 87 7.30e-19 82.4
Msa0135810 AT1G29962.1 29.651 172 114 4 5 169 4 175 7.86e-19 81.6
Msa0135810 AT4G09960.5 46.512 86 45 1 9 93 12 97 1.11e-18 82.4
Msa0135810 AT4G09960.3 46.512 86 45 1 9 93 28 113 1.52e-18 82.4
Msa0135810 AT2G45660.2 52.941 68 32 0 10 77 3 70 1.64e-18 80.1
Msa0135810 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.88e-18 82.0
Msa0135810 AT4G22950.3 50.000 76 38 0 10 85 3 78 2.14e-18 81.3
Msa0135810 AT4G22950.1 50.000 76 38 0 10 85 3 78 2.14e-18 81.3
Msa0135810 AT4G18960.1 28.279 244 137 8 5 226 15 242 3.62e-18 81.3
Msa0135810 AT2G45660.1 52.941 68 32 0 10 77 3 70 4.46e-18 80.1
Msa0135810 AT4G09960.4 46.512 86 45 1 9 93 97 182 4.68e-18 82.0
Msa0135810 AT2G22540.3 38.406 138 65 5 9 132 2 133 2.63e-17 78.6
Msa0135810 AT2G22540.1 38.406 138 65 5 9 132 2 133 2.63e-17 78.6
Msa0135810 AT5G51870.2 53.731 67 31 0 10 76 3 69 3.68e-17 76.6
Msa0135810 AT5G51870.1 53.731 67 31 0 10 76 3 69 3.69e-17 77.4
Msa0135810 AT4G24540.1 36.486 148 77 5 9 156 2 132 3.77e-17 77.8
Msa0135810 AT3G57230.2 47.059 68 36 0 9 76 2 69 5.65e-17 75.5
Msa0135810 AT5G51870.5 50.000 72 36 0 5 76 21 92 8.22e-17 76.3
Msa0135810 AT2G42830.1 47.368 76 40 0 1 76 9 84 8.31e-17 77.4
Msa0135810 AT1G22130.1 36.441 118 73 2 9 125 2 118 8.55e-17 78.6
Msa0135810 AT2G42830.2 47.368 76 40 0 1 76 9 84 9.29e-17 77.4
Msa0135810 AT5G51870.4 53.731 67 31 0 10 76 3 69 9.59e-17 76.6
Msa0135810 AT3G58780.1 50.704 71 35 0 6 76 14 84 1.04e-16 77.0
Msa0135810 AT3G58780.5 50.704 71 35 0 6 76 20 90 1.08e-16 77.0
Msa0135810 AT5G51870.3 53.731 67 31 0 10 76 13 79 1.11e-16 76.6
Msa0135810 AT5G10140.2 50.725 69 33 1 9 76 2 70 1.23e-16 75.1
Msa0135810 AT3G61120.1 51.471 68 33 0 9 76 2 69 1.25e-16 76.6
Msa0135810 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.32e-16 76.3
Msa0135810 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.37e-16 73.6
Msa0135810 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.44e-16 76.3
Msa0135810 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.55e-16 76.3
Msa0135810 AT1G77980.1 38.095 105 64 1 9 112 2 106 1.63e-16 77.8
Msa0135810 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.74e-16 75.1
Msa0135810 AT1G77950.3 47.368 76 38 2 9 83 2 76 1.81e-16 76.6
Msa0135810 AT1G77950.2 47.368 76 38 2 9 83 2 76 1.81e-16 76.6
Msa0135810 AT1G77950.1 47.368 76 38 2 9 83 2 76 1.81e-16 76.6
Msa0135810 AT1G77950.4 47.368 76 38 2 9 83 2 76 1.81e-16 76.6
Msa0135810 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.84e-16 75.1
Msa0135810 AT3G58780.4 50.704 71 35 0 6 76 14 84 2.07e-16 76.6
Msa0135810 AT3G57230.1 47.059 68 36 0 9 76 2 69 2.09e-16 76.3
Msa0135810 AT3G57230.4 47.059 68 36 0 9 76 2 69 2.09e-16 76.3
Msa0135810 AT5G62165.6 49.254 67 34 0 10 76 3 69 2.23e-16 73.9
Msa0135810 AT5G62165.9 49.254 67 34 0 10 76 3 69 2.23e-16 73.9
Msa0135810 AT5G62165.7 49.254 67 34 0 10 76 3 69 2.23e-16 73.9
Msa0135810 AT5G62165.8 49.254 67 34 0 10 76 3 69 2.23e-16 73.9
Msa0135810 AT5G62165.13 49.254 67 34 0 10 76 3 69 2.23e-16 73.9
Msa0135810 AT5G10140.1 50.725 69 33 1 9 76 2 70 2.23e-16 75.1
Msa0135810 AT5G62165.17 49.254 67 34 0 10 76 3 69 2.36e-16 74.3
Msa0135810 AT5G62165.12 49.254 67 34 0 10 76 3 69 2.36e-16 74.3
Msa0135810 AT5G62165.11 49.254 67 34 0 10 76 3 69 2.36e-16 74.3
Msa0135810 AT5G10140.3 50.725 69 33 1 9 76 2 70 2.52e-16 74.7
Msa0135810 AT5G13790.2 43.011 93 44 1 9 101 2 85 3.00e-16 76.3
Msa0135810 AT3G54340.1 30.128 156 85 3 9 162 2 135 3.04e-16 75.5
Msa0135810 AT3G57390.1 50.000 68 34 0 9 76 2 69 3.08e-16 75.9
Msa0135810 AT5G13790.1 51.471 68 33 0 9 76 2 69 4.03e-16 75.9
Msa0135810 AT4G11880.2 48.611 72 36 1 10 80 3 74 4.80e-16 73.9
Msa0135810 AT4G11880.3 48.611 72 36 1 10 80 3 74 4.80e-16 73.9
Msa0135810 AT2G22630.1 47.059 68 36 0 9 76 2 69 5.55e-16 74.7
Msa0135810 AT2G22630.2 47.059 68 36 0 9 76 2 69 5.55e-16 74.7
Msa0135810 AT1G69120.2 40.659 91 51 1 9 99 2 89 6.20e-16 74.7
Msa0135810 AT1G28450.1 29.371 143 95 3 5 141 4 146 7.52e-16 73.6
Msa0135810 AT5G51860.2 52.239 67 32 0 10 76 3 69 8.11e-16 73.9
Msa0135810 AT5G60910.1 49.296 71 33 1 9 79 2 69 8.56e-16 74.3
Msa0135810 AT5G62165.10 49.254 67 34 0 10 76 3 69 9.87e-16 73.6
Msa0135810 AT5G62165.4 49.254 67 34 0 10 76 3 69 9.87e-16 73.6
Msa0135810 AT5G51860.1 52.239 67 32 0 10 76 3 69 1.02e-15 73.6
Msa0135810 AT4G11880.4 48.611 72 36 1 10 80 3 74 1.11e-15 73.9
Msa0135810 AT4G11880.1 48.611 72 36 1 10 80 3 74 1.11e-15 73.9
Msa0135810 AT5G62165.3 49.254 67 34 0 10 76 3 69 1.18e-15 73.6
Msa0135810 AT5G62165.1 49.254 67 34 0 10 76 3 69 1.18e-15 73.6
Msa0135810 AT5G62165.2 49.254 67 34 0 10 76 3 69 1.18e-15 73.6
Msa0135810 AT1G69120.1 41.111 90 50 1 9 98 2 88 1.37e-15 74.3
Msa0135810 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.55e-15 73.9
Msa0135810 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.95e-15 73.6
Msa0135810 AT5G23260.4 44.330 97 46 3 2 90 9 105 2.87e-15 73.6
Msa0135810 AT5G23260.1 44.330 97 46 3 2 90 9 105 3.10e-15 73.2
Msa0135810 AT5G20240.2 47.143 70 35 1 9 76 2 71 3.56e-15 70.9
Msa0135810 AT5G15800.1 49.275 69 34 1 9 76 2 70 4.14e-15 72.8
Msa0135810 AT5G23260.3 45.455 88 42 2 9 90 2 89 5.50e-15 72.4
Msa0135810 AT2G22540.2 50.000 68 29 1 9 76 2 64 6.31e-15 72.0
Msa0135810 AT5G23260.2 45.455 88 42 2 9 90 2 89 6.33e-15 72.4
Msa0135810 AT5G20240.1 47.143 70 35 1 9 76 2 71 6.52e-15 71.6
Msa0135810 AT5G15800.2 49.275 69 34 1 9 76 2 70 6.69e-15 72.4
Msa0135810 AT1G17310.1 51.899 79 36 1 8 86 47 123 7.64e-15 71.6
Msa0135810 AT1G17310.2 51.899 79 36 1 8 86 58 134 1.00e-14 71.2
Msa0135810 AT2G14210.1 46.377 69 36 1 9 76 2 70 1.16e-14 71.2
Msa0135810 AT2G14210.2 46.377 69 36 1 9 76 2 70 1.61e-14 70.9
Msa0135810 AT5G65050.5 28.646 192 120 9 9 193 2 183 1.66e-14 69.7
Msa0135810 AT3G58780.2 53.333 60 28 0 6 65 14 73 2.56e-14 70.5
Msa0135810 AT3G02310.2 47.826 69 35 1 9 76 2 70 2.78e-14 69.7
Msa0135810 AT5G65050.2 46.377 69 36 1 9 76 2 70 2.95e-14 68.9
Msa0135810 AT5G65050.1 29.897 194 112 7 9 193 2 180 3.02e-14 68.9
Msa0135810 AT3G58780.3 53.333 60 28 0 6 65 14 73 3.54e-14 70.5
Msa0135810 AT2G03710.3 47.143 70 35 2 9 76 2 71 4.93e-14 68.6
Msa0135810 AT5G65050.3 46.377 69 36 1 9 76 2 70 5.79e-14 68.6
Msa0135810 AT1G24260.3 41.237 97 54 1 9 105 2 95 5.86e-14 69.3
Msa0135810 AT3G02310.1 47.826 69 35 1 9 76 2 70 7.14e-14 69.3
Msa0135810 AT1G24260.2 41.237 97 54 1 9 105 2 95 7.15e-14 69.3
Msa0135810 AT2G03710.2 47.143 70 35 2 9 76 2 71 1.00e-13 68.9
Msa0135810 AT2G03710.1 47.143 70 35 2 9 76 2 71 1.02e-13 68.9
Msa0135810 AT5G65060.2 46.377 69 36 1 9 76 2 70 1.02e-13 67.8
Msa0135810 AT5G65060.3 46.377 69 36 1 9 76 2 70 1.06e-13 67.8
Msa0135810 AT1G47760.1 34.127 126 66 4 9 131 2 113 1.17e-13 67.4
Msa0135810 AT5G65060.1 46.377 69 36 1 9 76 2 70 1.28e-13 67.8
Msa0135810 AT1G24260.1 53.571 56 26 0 9 64 2 57 1.40e-13 68.6
Msa0135810 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.69e-13 67.8
Msa0135810 AT5G65070.4 42.029 69 39 1 9 76 2 70 4.86e-13 65.1
Msa0135810 AT5G65070.1 42.029 69 39 1 9 76 2 70 9.57e-13 65.5
Msa0135810 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.77e-12 64.7
Msa0135810 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.78e-12 65.1
Msa0135810 AT5G65070.3 47.368 57 30 0 9 65 2 58 8.78e-12 63.2
Msa0135810 AT4G37435.1 40.278 72 42 1 9 79 2 73 1.94e-11 61.6
Msa0135810 AT1G69540.1 32.727 110 66 3 9 117 2 104 2.06e-11 63.2
Msa0135810 AT1G18750.4 25.806 186 119 6 9 177 2 185 2.09e-11 63.2
Msa0135810 AT1G18750.1 25.806 186 119 6 9 177 2 185 2.34e-11 63.2
Msa0135810 AT1G69540.2 32.727 110 66 3 9 117 2 104 2.46e-11 63.2
Msa0135810 AT2G26320.1 40.000 70 40 1 9 76 18 87 5.51e-11 58.5
Msa0135810 AT1G18750.3 37.333 75 45 1 9 81 2 76 5.63e-11 62.0
Msa0135810 AT5G65080.3 42.029 69 39 1 9 76 9 77 7.39e-11 60.1
Msa0135810 AT2G03060.2 39.286 84 48 3 9 90 2 84 8.66e-11 61.6
Msa0135810 AT2G03060.3 39.286 84 48 3 9 90 2 84 8.98e-11 61.2
Msa0135810 AT2G03060.7 39.286 84 48 3 9 90 2 84 8.98e-11 61.2
Msa0135810 AT2G03060.1 39.286 84 48 3 9 90 2 84 8.98e-11 61.2

Find 53 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGGCTGGTCCCGTTGA+TGG 0.303436 1_3:-67534268 Msa0135810:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1_3:+67534425 None:intergenic
ATGTTGCAACCTCACTTGTT+TGG 0.376512 1_3:-67534031 Msa0135810:CDS
GAGGAGACTAAGAAACTTGT+TGG 0.386198 1_3:-67534205 Msa0135810:CDS
TGCCGATAGGCTTGTAATCC+AGG 0.392094 1_3:-67534176 Msa0135810:CDS
GGGCTCAGATCAAAAGAATC+TGG 0.407516 1_3:+67533970 None:intergenic
TCTTCTCCATGTCCAGTAGC+TGG 0.428165 1_3:+67534341 None:intergenic
CTTGTTTGGCTTCAACAATA+CGG 0.429938 1_3:-67534017 Msa0135810:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1_3:-67534258 Msa0135810:CDS
GCGGAGGATTTCGCTGATGA+TGG 0.435525 1_3:+67534092 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1_3:-67534267 Msa0135810:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1_3:-67534257 Msa0135810:CDS
AGGCGACCGAGAGTCAGTTT+TGG 0.458130 1_3:-67534288 Msa0135810:CDS
TTGTTTGGCTTCAACAATAC+GGG 0.463078 1_3:-67534016 Msa0135810:CDS
GCCCTATTCATCCCATCAAC+GGG 0.481029 1_3:+67534256 None:intergenic
GCAGAGCGTGCAAAGCTCAC+TGG 0.483763 1_3:+67534555 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 1_3:+67534381 None:intergenic
GACTCAAATCAACCAGCTAC+TGG 0.506083 1_3:-67534353 Msa0135810:CDS
CACTTGCAAGTTGCTCTCGT+TGG 0.508443 1_3:+67534615 None:intergenic
GTCTATGACCGTATCAACAT+TGG 0.509296 1_3:+67534471 None:intergenic
GTTGCAAACATTTGAGTTTG+CGG 0.514698 1_3:+67534073 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1_3:+67534255 None:intergenic
AACAAGTGAGGTTGCAACAT+AGG 0.539918 1_3:+67534034 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1_3:+67534472 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1_3:-67534479 Msa0135810:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1_3:-67534591 Msa0135810:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.555433 1_3:-67534678 None:intergenic
GTGGGACTCGAGAGAGATAA+CGG 0.555728 1_3:+67534449 None:intergenic
AGTGAGCTTTGCACGCTCTG+CGG 0.563441 1_3:-67534553 Msa0135810:CDS
AGCCCACCAAAACTGACTCT+CGG 0.565176 1_3:+67534282 None:intergenic
AATCAACCAGCTACTGGACA+TGG 0.571929 1_3:-67534347 Msa0135810:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1_3:-67534592 Msa0135810:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1_3:+67534502 None:intergenic
AGAGCTGAGCAACTTGCGCA+AGG 0.589828 1_3:-67534308 Msa0135810:CDS
GCCGATAGGCTTGTAATCCA+GGG 0.597733 1_3:-67534175 Msa0135810:CDS
TTGTTGGACATCATGCCGAT+AGG 0.598515 1_3:-67534189 Msa0135810:CDS
TGACCGTATCAACATTGGGT+TGG 0.600758 1_3:+67534476 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 1_3:+67534158 None:intergenic
ACCCTGGATTACAAGCCTAT+CGG 0.607186 1_3:+67534174 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1_3:+67534578 None:intergenic
TGTTTGGCTTCAACAATACG+GGG 0.616084 1_3:-67534015 Msa0135810:CDS
TGAGCTTCAACCATGTCGAG+TGG 0.632070 1_3:-67534682 None:intergenic
GGATTTCGCTGATGATGGAG+AGG 0.633183 1_3:+67534097 None:intergenic
CTCAGATCAAAAGAATCTGG+AGG 0.633945 1_3:+67533973 None:intergenic
TGGTACCATGCAATTCATTG+AGG 0.638950 1_3:-67534416 Msa0135810:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1_3:-67534436 Msa0135810:CDS
ATGAGCCTCAATGAATTGCA+TGG 0.640763 1_3:+67534411 None:intergenic
GCAAACATTTGAGTTTGCGG+AGG 0.647148 1_3:+67534076 None:intergenic
TTGTTGAAGCCAAACAAGTG+AGG 0.651690 1_3:+67534022 None:intergenic
TCAGATCAAAAGAATCTGGA+GGG 0.666536 1_3:+67533974 None:intergenic
TTTGGCTTCAACAATACGGG+GGG 0.687957 1_3:-67534013 Msa0135810:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1_3:-67534667 Msa0135810:CDS
GTTTGGCTTCAACAATACGG+GGG 0.701007 1_3:-67534014 Msa0135810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1_3:67534011-67534030 None:intergenic 20.0%
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1_3:67534418-67534437 None:intergenic 20.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1_3:67534419-67534438 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1_3:67534416-67534435 Msa0135810:CDS 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - chr1_3:67534422-67534441 Msa0135810:CDS 25.0%
! AAAAATTGAAAGGTTTGAGT+AGG + chr1_3:67534504-67534523 None:intergenic 25.0%
!!! ACTCAAACCTTTCAATTTTT+TGG - chr1_3:67534504-67534523 Msa0135810:CDS 25.0%
! ATTTCCACCAAAAAATTGAA+AGG + chr1_3:67534514-67534533 None:intergenic 25.0%
!!! TTTCAATTTTTTGGTGGAAA+TGG - chr1_3:67534513-67534532 Msa0135810:CDS 25.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - chr1_3:67534425-67534444 Msa0135810:CDS 30.0%
!!! CAAACCTTTCAATTTTTTGG+TGG - chr1_3:67534507-67534526 Msa0135810:CDS 30.0%
TCTATGACCGTATCAACATT+GGG + chr1_3:67534180-67534199 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1_3:67534226-67534245 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1_3:67534227-67534246 None:intergenic 35.0%
! GTTGCAAACATTTGAGTTTG+CGG + chr1_3:67534579-67534598 None:intergenic 35.0%
! CTTGTTTGGCTTCAACAATA+CGG - chr1_3:67534632-67534651 Msa0135810:CDS 35.0%
! TTGTTTGGCTTCAACAATAC+GGG - chr1_3:67534633-67534652 Msa0135810:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG + chr1_3:67534150-67534169 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1_3:67534150-67534169 Msa0135810:CDS 40.0%
GTCTATGACCGTATCAACAT+TGG + chr1_3:67534181-67534200 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1_3:67534225-67534244 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1_3:67534233-67534252 Msa0135810:CDS 40.0%
ATGAGCCTCAATGAATTGCA+TGG + chr1_3:67534241-67534260 None:intergenic 40.0%
GAGGAGACTAAGAAACTTGT+TGG - chr1_3:67534444-67534463 Msa0135810:CDS 40.0%
AACAAGTGAGGTTGCAACAT+AGG + chr1_3:67534618-67534637 None:intergenic 40.0%
ATGTTGCAACCTCACTTGTT+TGG - chr1_3:67534618-67534637 Msa0135810:CDS 40.0%
TTGTTGAAGCCAAACAAGTG+AGG + chr1_3:67534630-67534649 None:intergenic 40.0%
! TGTTTGGCTTCAACAATACG+GGG - chr1_3:67534634-67534653 Msa0135810:CDS 40.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1_3:67534002-67534021 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1_3:67534074-67534093 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1_3:67534130-67534149 Msa0135810:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1_3:67534131-67534150 Msa0135810:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG - chr1_3:67534170-67534189 Msa0135810:CDS 45.0%
TGACCGTATCAACATTGGGT+TGG + chr1_3:67534176-67534195 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1_3:67534221-67534240 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1_3:67534222-67534241 None:intergenic 45.0%
GACTCAAATCAACCAGCTAC+TGG - chr1_3:67534296-67534315 Msa0135810:CDS 45.0%
AATCAACCAGCTACTGGACA+TGG - chr1_3:67534302-67534321 Msa0135810:CDS 45.0%
! TCCCGTTGATGGGATGAATA+GGG - chr1_3:67534392-67534411 Msa0135810:CDS 45.0%
TTGTTGGACATCATGCCGAT+AGG - chr1_3:67534460-67534479 Msa0135810:CDS 45.0%
ACCCTGGATTACAAGCCTAT+CGG + chr1_3:67534478-67534497 None:intergenic 45.0%
! GCAAACATTTGAGTTTGCGG+AGG + chr1_3:67534576-67534595 None:intergenic 45.0%
! GTTTGGCTTCAACAATACGG+GGG - chr1_3:67534635-67534654 Msa0135810:CDS 45.0%
! TTTGGCTTCAACAATACGGG+GGG - chr1_3:67534636-67534655 Msa0135810:CDS 45.0%
CACTTGCAAGTTGCTCTCGT+TGG + chr1_3:67534037-67534056 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1_3:67534129-67534148 Msa0135810:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1_3:67534137-67534156 Msa0135810:CDS 50.0%
GTGGGACTCGAGAGAGATAA+CGG + chr1_3:67534203-67534222 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + chr1_3:67534271-67534290 None:intergenic 50.0%
TCTTCTCCATGTCCAGTAGC+TGG + chr1_3:67534311-67534330 None:intergenic 50.0%
!! GACCGAGAGTCAGTTTTGGT+GGG - chr1_3:67534365-67534384 Msa0135810:CDS 50.0%
! AGCCCACCAAAACTGACTCT+CGG + chr1_3:67534370-67534389 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - chr1_3:67534391-67534410 Msa0135810:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG + chr1_3:67534396-67534415 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + chr1_3:67534397-67534416 None:intergenic 50.0%
TGCCGATAGGCTTGTAATCC+AGG - chr1_3:67534473-67534492 Msa0135810:CDS 50.0%
GCCGATAGGCTTGTAATCCA+GGG - chr1_3:67534474-67534493 Msa0135810:CDS 50.0%
!! GGATTTCGCTGATGATGGAG+AGG + chr1_3:67534555-67534574 None:intergenic 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1_3:67533982-67534001 Msa0135810:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1_3:67534057-67534076 Msa0135810:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1_3:67534058-67534077 Msa0135810:CDS 55.0%
AGTGAGCTTTGCACGCTCTG+CGG - chr1_3:67534096-67534115 Msa0135810:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1_3:67534213-67534232 Msa0135810:CDS 55.0%
AGAGCTGAGCAACTTGCGCA+AGG - chr1_3:67534341-67534360 Msa0135810:CDS 55.0%
! AGGCGACCGAGAGTCAGTTT+TGG - chr1_3:67534361-67534380 Msa0135810:CDS 55.0%
!! CGACCGAGAGTCAGTTTTGG+TGG - chr1_3:67534364-67534383 Msa0135810:CDS 55.0%
!! GAGAGTCAGTTTTGGTGGGC+TGG - chr1_3:67534369-67534388 Msa0135810:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG + chr1_3:67534494-67534513 None:intergenic 55.0%
GCGGAGGATTTCGCTGATGA+TGG + chr1_3:67534560-67534579 None:intergenic 55.0%
GCTTCAACAATACGGGGGGA+GGG - chr1_3:67534640-67534659 Msa0135810:CDS 55.0%
CTTCAACAATACGGGGGGAG+GGG - chr1_3:67534641-67534660 Msa0135810:CDS 55.0%
TTCAACAATACGGGGGGAGG+GGG - chr1_3:67534642-67534661 Msa0135810:CDS 55.0%
GCAGAGCGTGCAAAGCTCAC+TGG + chr1_3:67534097-67534116 None:intergenic 60.0%
GGCTTCAACAATACGGGGGG+AGG - chr1_3:67534639-67534658 Msa0135810:CDS 60.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - chr1_3:67534381-67534400 Msa0135810:CDS 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - chr1_3:67534382-67534401 Msa0135810:CDS 65.0%
AACAATACGGGGGGAGGGGG+TGG - chr1_3:67534645-67534664 Msa0135810:CDS 65.0%
ACGGGGGGAGGGGGTGGATA+TGG - chr1_3:67534651-67534670 Msa0135810:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67533979 67534692 67533979 ID=Msa0135810;Name=Msa0135810
chr1_3 mRNA 67533979 67534692 67533979 ID=Msa0135810-mRNA-1;Parent=Msa0135810;Name=Msa0135810-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|237
chr1_3 exon 67533979 67534692 67533979 ID=Msa0135810-mRNA-1:exon:23174;Parent=Msa0135810-mRNA-1
chr1_3 CDS 67533979 67534692 67533979 ID=Msa0135810-mRNA-1:cds;Parent=Msa0135810-mRNA-1
Gene Sequence

>Msa0135810

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGACCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACGCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCATCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAAATCAACCAGCTACTGGACATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGACTAAGAAACTTGTTGGACATCATGCCGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAGCGAAATCCTCCGCAAACTCAAATGTTTGCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>Msa0135810

MSSGRKSRGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNRAQLEFFKKALEETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQRNPPQTQMFATQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF*