Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135950 | A0A072TDR2 | 92.105 | 152 | 7 | 1 | 20 | 166 | 1 | 152 | 2.09e-98 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0135950 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135950 | MtrunA17_Chr2g0289081 | 60.714 | 56 | 22 | 0 | 37 | 92 | 57 | 112 | 3.08e-19 | 80.9 |
| Msa0135950 | MtrunA17_Chr5g0448761 | 30.147 | 136 | 87 | 2 | 38 | 165 | 54 | 189 | 2.82e-13 | 68.9 |
| Msa0135950 | MtrunA17_Chr1g0198761 | 34.146 | 123 | 63 | 5 | 50 | 156 | 53 | 173 | 7.15e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135950 | AT4G38180.1 | 30.075 | 133 | 84 | 3 | 41 | 165 | 70 | 201 | 2.42e-11 | 63.5 |
Find 25 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 1_3:+67752465 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 1_3:-67752226 | Msa0135950:CDS |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 1_3:+67750593 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 1_3:-67752050 | Msa0135950:CDS |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 1_3:-67751903 | Msa0135950:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 1_3:+67751957 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 1_3:+67751903 | None:intergenic |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 1_3:+67751904 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 1_3:-67750645 | Msa0135950:intron |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 1_3:+67752452 | None:intergenic |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 1_3:-67750569 | Msa0135950:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 1_3:-67752013 | Msa0135950:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 1_3:-67752105 | Msa0135950:CDS |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 1_3:+67752261 | None:intergenic |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 1_3:+67751958 | None:intergenic |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 1_3:+67750465 | None:intergenic |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 1_3:-67750557 | Msa0135950:CDS |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 1_3:-67752439 | Msa0135950:intron |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 1_3:+67751905 | None:intergenic |
| TGTCGTTACTATCAACATGT+TGG | 0.595608 | 1_3:+67752082 | None:intergenic |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 1_3:-67752451 | Msa0135950:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 1_3:-67751932 | Msa0135950:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 1_3:+67752219 | None:intergenic |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 1_3:+67752262 | None:intergenic |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 1_3:-67752448 | Msa0135950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr1_3:67751292-67751311 | Msa0135950:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr1_3:67751293-67751312 | Msa0135950:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr1_3:67751292-67751311 | Msa0135950:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr1_3:67751293-67751312 | Msa0135950:intron | 10.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr1_3:67751755-67751774 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr1_3:67751755-67751774 | Msa0135950:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr1_3:67751755-67751774 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr1_3:67751755-67751774 | Msa0135950:intron | 15.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr1_3:67751257-67751276 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr1_3:67751258-67751277 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr1_3:67751340-67751359 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr1_3:67751545-67751564 | Msa0135950:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr1_3:67751769-67751788 | Msa0135950:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr1_3:67751831-67751850 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr1_3:67752244-67752263 | Msa0135950:CDS | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr1_3:67752245-67752264 | Msa0135950:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr1_3:67752326-67752345 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr1_3:67752327-67752346 | Msa0135950:intron | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr1_3:67751257-67751276 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr1_3:67751258-67751277 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr1_3:67751340-67751359 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr1_3:67751545-67751564 | Msa0135950:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr1_3:67751769-67751788 | Msa0135950:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr1_3:67751831-67751850 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr1_3:67752244-67752263 | Msa0135950:CDS | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr1_3:67752245-67752264 | Msa0135950:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr1_3:67752326-67752345 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr1_3:67752327-67752346 | Msa0135950:intron | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr1_3:67750690-67750709 | Msa0135950:intron | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr1_3:67750700-67750719 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr1_3:67750748-67750767 | Msa0135950:intron | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr1_3:67750754-67750773 | Msa0135950:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr1_3:67750935-67750954 | Msa0135950:intron | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr1_3:67750961-67750980 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr1_3:67750962-67750981 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr1_3:67751014-67751033 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr1_3:67751015-67751034 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | + | chr1_3:67751540-67751559 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr1_3:67751671-67751690 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr1_3:67751719-67751738 | Msa0135950:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr1_3:67752037-67752056 | Msa0135950:CDS | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr1_3:67752076-67752095 | Msa0135950:intron | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr1_3:67750690-67750709 | Msa0135950:intron | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr1_3:67750700-67750719 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr1_3:67750748-67750767 | Msa0135950:intron | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr1_3:67750754-67750773 | Msa0135950:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr1_3:67750935-67750954 | Msa0135950:intron | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr1_3:67750961-67750980 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr1_3:67750962-67750981 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr1_3:67751014-67751033 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr1_3:67751015-67751034 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | + | chr1_3:67751540-67751559 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr1_3:67751671-67751690 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr1_3:67751719-67751738 | Msa0135950:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr1_3:67752037-67752056 | Msa0135950:CDS | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr1_3:67752076-67752095 | Msa0135950:intron | 25.0% |
| CATGTTATGACTATCTTCTT+CGG | + | chr1_3:67750467-67750486 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr1_3:67750811-67750830 | Msa0135950:intron | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr1_3:67750866-67750885 | Msa0135950:intron | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | - | chr1_3:67750903-67750922 | Msa0135950:intron | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr1_3:67750984-67751003 | Msa0135950:intron | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr1_3:67751016-67751035 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr1_3:67751013-67751032 | Msa0135950:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr1_3:67751029-67751048 | Msa0135950:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr1_3:67751030-67751049 | Msa0135950:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr1_3:67751119-67751138 | Msa0135950:intron | 30.0% | |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | + | chr1_3:67751185-67751204 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr1_3:67751304-67751323 | Msa0135950:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr1_3:67751330-67751349 | Msa0135950:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | + | chr1_3:67751414-67751433 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr1_3:67751432-67751451 | Msa0135950:intron | 30.0% |
| ! | AAACAGAGAAGTCTTTTACA+TGG | - | chr1_3:67751475-67751494 | Msa0135950:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr1_3:67751490-67751509 | Msa0135950:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | - | chr1_3:67751727-67751746 | Msa0135950:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | + | chr1_3:67751797-67751816 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr1_3:67751802-67751821 | Msa0135950:intron | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | - | chr1_3:67751837-67751856 | Msa0135950:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | - | chr1_3:67751838-67751857 | Msa0135950:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr1_3:67752128-67752147 | Msa0135950:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr1_3:67752129-67752148 | Msa0135950:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr1_3:67752193-67752212 | Msa0135950:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr1_3:67752237-67752256 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr1_3:67752271-67752290 | Msa0135950:CDS | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr1_3:67752334-67752353 | Msa0135950:intron | 30.0% |
| GCTAATATTGGCATTATATG+TGG | - | chr1_3:67752359-67752378 | Msa0135950:intron | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr1_3:67752475-67752494 | None:intergenic | 30.0% |
| CATGTTATGACTATCTTCTT+CGG | + | chr1_3:67750467-67750486 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr1_3:67750811-67750830 | Msa0135950:intron | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr1_3:67750866-67750885 | Msa0135950:intron | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | - | chr1_3:67750903-67750922 | Msa0135950:intron | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr1_3:67750984-67751003 | Msa0135950:intron | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr1_3:67751016-67751035 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr1_3:67751013-67751032 | Msa0135950:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr1_3:67751029-67751048 | Msa0135950:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr1_3:67751030-67751049 | Msa0135950:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr1_3:67751119-67751138 | Msa0135950:intron | 30.0% | |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | + | chr1_3:67751185-67751204 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr1_3:67751304-67751323 | Msa0135950:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr1_3:67751330-67751349 | Msa0135950:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | + | chr1_3:67751414-67751433 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr1_3:67751432-67751451 | Msa0135950:intron | 30.0% |
| ! | AAACAGAGAAGTCTTTTACA+TGG | - | chr1_3:67751475-67751494 | Msa0135950:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr1_3:67751490-67751509 | Msa0135950:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | - | chr1_3:67751727-67751746 | Msa0135950:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | + | chr1_3:67751797-67751816 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr1_3:67751802-67751821 | Msa0135950:intron | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | - | chr1_3:67751837-67751856 | Msa0135950:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | - | chr1_3:67751838-67751857 | Msa0135950:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr1_3:67752128-67752147 | Msa0135950:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr1_3:67752129-67752148 | Msa0135950:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr1_3:67752193-67752212 | Msa0135950:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr1_3:67752237-67752256 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr1_3:67752271-67752290 | Msa0135950:CDS | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr1_3:67752334-67752353 | Msa0135950:intron | 30.0% |
| GCTAATATTGGCATTATATG+TGG | - | chr1_3:67752359-67752378 | Msa0135950:intron | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr1_3:67752475-67752494 | None:intergenic | 30.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | + | chr1_3:67750454-67750473 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | - | chr1_3:67750465-67750484 | Msa0135950:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | - | chr1_3:67750468-67750487 | Msa0135950:CDS | 35.0% | |
| TGTCGTTACTATCAACATGT+TGG | + | chr1_3:67750837-67750856 | None:intergenic | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr1_3:67751071-67751090 | Msa0135950:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr1_3:67751072-67751091 | Msa0135950:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr1_3:67751106-67751125 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | - | chr1_3:67751114-67751133 | Msa0135950:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr1_3:67751142-67751161 | Msa0135950:intron | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | - | chr1_3:67751176-67751195 | Msa0135950:intron | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | - | chr1_3:67751183-67751202 | Msa0135950:intron | 35.0% | |
| AATCCAGTAAATGGTGCAAA+TGG | + | chr1_3:67751405-67751424 | None:intergenic | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr1_3:67751445-67751464 | None:intergenic | 35.0% | |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr1_3:67751497-67751516 | Msa0135950:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | + | chr1_3:67751600-67751619 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr1_3:67751649-67751668 | None:intergenic | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr1_3:67751777-67751796 | Msa0135950:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | + | chr1_3:67751850-67751869 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr1_3:67751944-67751963 | Msa0135950:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr1_3:67752207-67752226 | Msa0135950:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr1_3:67752208-67752227 | Msa0135950:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr1_3:67752347-67752366 | Msa0135950:intron | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr1_3:67752454-67752473 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | + | chr1_3:67750454-67750473 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | - | chr1_3:67750465-67750484 | Msa0135950:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | - | chr1_3:67750468-67750487 | Msa0135950:CDS | 35.0% | |
| TGTCGTTACTATCAACATGT+TGG | + | chr1_3:67750837-67750856 | None:intergenic | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr1_3:67751071-67751090 | Msa0135950:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr1_3:67751072-67751091 | Msa0135950:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr1_3:67751106-67751125 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | - | chr1_3:67751114-67751133 | Msa0135950:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr1_3:67751142-67751161 | Msa0135950:intron | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | - | chr1_3:67751176-67751195 | Msa0135950:intron | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | - | chr1_3:67751183-67751202 | Msa0135950:intron | 35.0% | |
| AATCCAGTAAATGGTGCAAA+TGG | + | chr1_3:67751405-67751424 | None:intergenic | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr1_3:67751445-67751464 | None:intergenic | 35.0% | |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr1_3:67751497-67751516 | Msa0135950:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | + | chr1_3:67751600-67751619 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr1_3:67751649-67751668 | None:intergenic | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr1_3:67751777-67751796 | Msa0135950:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | + | chr1_3:67751850-67751869 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr1_3:67751944-67751963 | Msa0135950:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr1_3:67752207-67752226 | Msa0135950:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr1_3:67752208-67752227 | Msa0135950:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr1_3:67752347-67752366 | Msa0135950:intron | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr1_3:67752454-67752473 | None:intergenic | 35.0% |
| TCATAACATGGAGGACATAG+AGG | - | chr1_3:67750477-67750496 | Msa0135950:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr1_3:67750657-67750676 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr1_3:67750658-67750677 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr1_3:67750944-67750963 | Msa0135950:intron | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr1_3:67751033-67751052 | Msa0135950:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr1_3:67751034-67751053 | Msa0135950:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr1_3:67751035-67751054 | Msa0135950:intron | 40.0% | |
| ! | ATGCCATTTGCACCATTTAC+TGG | - | chr1_3:67751399-67751418 | Msa0135950:intron | 40.0% |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr1_3:67751503-67751522 | Msa0135950:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr1_3:67751504-67751523 | Msa0135950:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr1_3:67751604-67751623 | Msa0135950:intron | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | - | chr1_3:67751740-67751759 | Msa0135950:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr1_3:67752109-67752128 | Msa0135950:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr1_3:67752121-67752140 | None:intergenic | 40.0% |
| TCATAACATGGAGGACATAG+AGG | - | chr1_3:67750477-67750496 | Msa0135950:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr1_3:67750657-67750676 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr1_3:67750658-67750677 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr1_3:67750944-67750963 | Msa0135950:intron | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr1_3:67751033-67751052 | Msa0135950:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr1_3:67751034-67751053 | Msa0135950:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr1_3:67751035-67751054 | Msa0135950:intron | 40.0% | |
| ! | ATGCCATTTGCACCATTTAC+TGG | - | chr1_3:67751399-67751418 | Msa0135950:intron | 40.0% |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr1_3:67751503-67751522 | Msa0135950:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr1_3:67751504-67751523 | Msa0135950:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr1_3:67751604-67751623 | Msa0135950:intron | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | - | chr1_3:67751740-67751759 | Msa0135950:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr1_3:67752109-67752128 | Msa0135950:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr1_3:67752121-67752140 | None:intergenic | 40.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr1_3:67751041-67751060 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr1_3:67751102-67751121 | None:intergenic | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | - | chr1_3:67751555-67751574 | Msa0135950:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr1_3:67751569-67751588 | Msa0135950:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr1_3:67751856-67751875 | Msa0135950:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr1_3:67751928-67751947 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr1_3:67752220-67752239 | None:intergenic | 45.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr1_3:67751041-67751060 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr1_3:67751102-67751121 | None:intergenic | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | - | chr1_3:67751555-67751574 | Msa0135950:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr1_3:67751569-67751588 | Msa0135950:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr1_3:67751856-67751875 | Msa0135950:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr1_3:67751928-67751947 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr1_3:67752220-67752239 | None:intergenic | 45.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr1_3:67751310-67751329 | Msa0135950:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr1_3:67751507-67751526 | Msa0135950:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr1_3:67752091-67752110 | Msa0135950:CDS | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr1_3:67752221-67752240 | Msa0135950:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr1_3:67751310-67751329 | Msa0135950:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr1_3:67751507-67751526 | Msa0135950:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr1_3:67752091-67752110 | Msa0135950:CDS | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr1_3:67752221-67752240 | Msa0135950:CDS | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr1_3:67751084-67751103 | Msa0135950:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr1_3:67751314-67751333 | Msa0135950:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr1_3:67751084-67751103 | Msa0135950:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr1_3:67751314-67751333 | Msa0135950:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 67750442 | 67752496 | 67750442 | ID=Msa0135950;Name=Msa0135950 |
| chr1_3 | mRNA | 67750442 | 67752496 | 67750442 | ID=Msa0135950-mRNA-1;Parent=Msa0135950;Name=Msa0135950-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.75|0.33|0.25|4|0|238 |
| chr1_3 | exon | 67752440 | 67752496 | 67752440 | ID=Msa0135950-mRNA-1:exon:23335;Parent=Msa0135950-mRNA-1 |
| chr1_3 | exon | 67752091 | 67752313 | 67752091 | ID=Msa0135950-mRNA-1:exon:23334;Parent=Msa0135950-mRNA-1 |
| chr1_3 | exon | 67751859 | 67752075 | 67751859 | ID=Msa0135950-mRNA-1:exon:23333;Parent=Msa0135950-mRNA-1 |
| chr1_3 | exon | 67750442 | 67750658 | 67750442 | ID=Msa0135950-mRNA-1:exon:23332;Parent=Msa0135950-mRNA-1 |
| chr1_3 | CDS | 67752440 | 67752496 | 67752440 | ID=Msa0135950-mRNA-1:cds;Parent=Msa0135950-mRNA-1 |
| chr1_3 | CDS | 67752091 | 67752313 | 67752091 | ID=Msa0135950-mRNA-1:cds;Parent=Msa0135950-mRNA-1 |
| chr1_3 | CDS | 67751859 | 67752075 | 67751859 | ID=Msa0135950-mRNA-1:cds;Parent=Msa0135950-mRNA-1 |
| chr1_3 | CDS | 67750442 | 67750658 | 67750442 | ID=Msa0135950-mRNA-1:cds;Parent=Msa0135950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
