Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136150 | sp|Q7XHI9|BH084_ARATH | 39.275 | 331 | 166 | 10 | 10 | 314 | 6 | 327 | 1.55e-50 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136150 | G7IET1 | 82.334 | 317 | 24 | 4 | 1 | 315 | 1 | 287 | 7.52e-173 | 489 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0136150 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136150 | MtrunA17_Chr1g0207311 | 82.334 | 317 | 24 | 4 | 1 | 315 | 1 | 287 | 1.45e-176 | 489 |
| Msa0136150 | MtrunA17_Chr5g0393721 | 47.904 | 334 | 132 | 11 | 1 | 313 | 1 | 313 | 5.28e-81 | 248 |
| Msa0136150 | MtrunA17_Chr1g0207301 | 43.363 | 339 | 154 | 7 | 1 | 313 | 51 | 377 | 4.08e-64 | 207 |
| Msa0136150 | MtrunA17_Chr3g0134741 | 51.149 | 174 | 71 | 3 | 147 | 308 | 142 | 313 | 1.52e-47 | 162 |
| Msa0136150 | MtrunA17_Chr1g0152651 | 84.416 | 77 | 12 | 0 | 223 | 299 | 273 | 349 | 2.43e-39 | 142 |
| Msa0136150 | MtrunA17_Chr1g0207321 | 61.607 | 112 | 29 | 3 | 46 | 150 | 23 | 127 | 2.67e-34 | 122 |
| Msa0136150 | MtrunA17_Chr5g0435021 | 49.451 | 91 | 45 | 1 | 202 | 292 | 197 | 286 | 1.66e-23 | 98.2 |
| Msa0136150 | MtrunA17_Chr8g0384141 | 66.071 | 56 | 19 | 0 | 233 | 288 | 123 | 178 | 1.60e-18 | 83.6 |
| Msa0136150 | MtrunA17_Chr4g0074161 | 57.576 | 66 | 28 | 0 | 222 | 287 | 204 | 269 | 1.17e-16 | 80.1 |
| Msa0136150 | MtrunA17_Chr3g0134001 | 62.963 | 54 | 20 | 0 | 233 | 286 | 180 | 233 | 1.27e-16 | 78.6 |
| Msa0136150 | MtrunA17_Chr7g0243041 | 56.364 | 55 | 24 | 0 | 231 | 285 | 33 | 87 | 6.03e-16 | 73.9 |
| Msa0136150 | MtrunA17_Chr1g0190731 | 52.055 | 73 | 35 | 0 | 215 | 287 | 184 | 256 | 1.24e-15 | 76.6 |
| Msa0136150 | MtrunA17_Chr7g0234761 | 43.299 | 97 | 45 | 2 | 201 | 287 | 285 | 381 | 4.35e-13 | 69.7 |
| Msa0136150 | MtrunA17_Chr4g0014771 | 42.857 | 98 | 55 | 1 | 193 | 289 | 87 | 184 | 4.74e-13 | 67.0 |
| Msa0136150 | MtrunA17_Chr1g0193321 | 47.368 | 57 | 30 | 0 | 231 | 287 | 469 | 525 | 1.33e-12 | 68.6 |
| Msa0136150 | MtrunA17_Chr1g0153241 | 36.620 | 71 | 45 | 0 | 231 | 301 | 92 | 162 | 4.56e-12 | 65.1 |
| Msa0136150 | MtrunA17_Chr3g0095391 | 40.278 | 72 | 38 | 1 | 222 | 293 | 307 | 373 | 1.95e-11 | 64.7 |
| Msa0136150 | MtrunA17_Chr8g0339091 | 40.449 | 89 | 43 | 2 | 225 | 312 | 292 | 371 | 2.98e-11 | 63.9 |
| Msa0136150 | MtrunA17_Chr5g0402031 | 37.037 | 81 | 51 | 0 | 233 | 313 | 114 | 194 | 3.91e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136150 | AT2G14760.1 | 39.275 | 331 | 166 | 10 | 10 | 314 | 6 | 327 | 1.57e-51 | 173 |
| Msa0136150 | AT2G14760.3 | 37.791 | 344 | 166 | 11 | 10 | 314 | 6 | 340 | 9.71e-48 | 163 |
| Msa0136150 | AT4G33880.1 | 36.695 | 357 | 152 | 14 | 10 | 306 | 6 | 348 | 5.16e-46 | 159 |
| Msa0136150 | AT5G43175.1 | 70.103 | 97 | 29 | 0 | 210 | 306 | 118 | 214 | 6.55e-43 | 147 |
| Msa0136150 | AT1G27740.1 | 78.571 | 84 | 18 | 0 | 223 | 306 | 166 | 249 | 2.62e-42 | 147 |
| Msa0136150 | AT5G37800.1 | 53.409 | 88 | 40 | 1 | 205 | 292 | 183 | 269 | 4.57e-23 | 97.4 |
| Msa0136150 | AT1G66470.1 | 60.000 | 70 | 27 | 1 | 223 | 292 | 195 | 263 | 1.37e-21 | 93.2 |
| Msa0136150 | AT2G24260.2 | 53.333 | 75 | 35 | 0 | 223 | 297 | 34 | 108 | 8.07e-18 | 81.6 |
| Msa0136150 | AT4G30980.1 | 57.143 | 70 | 30 | 0 | 218 | 287 | 124 | 193 | 1.27e-17 | 82.4 |
| Msa0136150 | AT4G30980.2 | 57.143 | 70 | 30 | 0 | 218 | 287 | 172 | 241 | 1.69e-17 | 82.4 |
| Msa0136150 | AT2G24260.1 | 60.000 | 65 | 26 | 0 | 223 | 287 | 137 | 201 | 2.54e-17 | 82.0 |
| Msa0136150 | AT5G01305.1 | 53.226 | 62 | 29 | 0 | 222 | 283 | 35 | 96 | 1.24e-16 | 76.6 |
| Msa0136150 | AT3G21330.1 | 58.929 | 56 | 23 | 0 | 231 | 286 | 276 | 331 | 1.76e-16 | 79.7 |
| Msa0136150 | AT5G58010.1 | 55.385 | 65 | 29 | 0 | 223 | 287 | 98 | 162 | 9.69e-16 | 76.6 |
| Msa0136150 | AT4G00120.1 | 46.970 | 66 | 34 | 1 | 233 | 298 | 121 | 185 | 2.24e-15 | 73.9 |
| Msa0136150 | AT1G09530.3 | 40.909 | 66 | 39 | 0 | 231 | 296 | 344 | 409 | 4.86e-12 | 67.0 |
| Msa0136150 | AT1G09530.2 | 40.909 | 66 | 39 | 0 | 231 | 296 | 344 | 409 | 4.86e-12 | 67.0 |
| Msa0136150 | AT1G09530.5 | 40.909 | 66 | 39 | 0 | 231 | 296 | 344 | 409 | 4.86e-12 | 67.0 |
| Msa0136150 | AT1G09530.1 | 40.909 | 66 | 39 | 0 | 231 | 296 | 344 | 409 | 4.86e-12 | 67.0 |
| Msa0136150 | AT1G09530.4 | 40.909 | 66 | 39 | 0 | 231 | 296 | 344 | 409 | 4.86e-12 | 67.0 |
| Msa0136150 | AT1G09530.6 | 40.909 | 66 | 39 | 0 | 231 | 296 | 344 | 409 | 4.86e-12 | 67.0 |
| Msa0136150 | AT4G09180.1 | 52.941 | 68 | 31 | 1 | 223 | 289 | 183 | 250 | 7.52e-12 | 65.1 |
| Msa0136150 | AT3G23690.1 | 40.625 | 96 | 54 | 2 | 193 | 287 | 162 | 255 | 8.06e-12 | 65.9 |
| Msa0136150 | AT1G73830.2 | 44.048 | 84 | 43 | 2 | 225 | 307 | 148 | 228 | 9.98e-12 | 64.7 |
| Msa0136150 | AT1G73830.1 | 44.048 | 84 | 43 | 2 | 225 | 307 | 148 | 228 | 9.99e-12 | 64.7 |
| Msa0136150 | AT5G48560.2 | 46.053 | 76 | 40 | 1 | 213 | 287 | 290 | 365 | 1.01e-11 | 65.9 |
| Msa0136150 | AT5G48560.1 | 46.053 | 76 | 40 | 1 | 213 | 287 | 290 | 365 | 1.02e-11 | 65.9 |
| Msa0136150 | AT1G18400.2 | 50.000 | 64 | 31 | 1 | 225 | 287 | 146 | 209 | 1.15e-11 | 64.3 |
| Msa0136150 | AT1G18400.1 | 50.000 | 64 | 31 | 1 | 225 | 287 | 146 | 209 | 1.73e-11 | 63.9 |
| Msa0136150 | AT5G50915.3 | 43.529 | 85 | 43 | 3 | 225 | 308 | 137 | 217 | 1.91e-11 | 63.9 |
| Msa0136150 | AT5G50915.4 | 43.529 | 85 | 43 | 3 | 225 | 308 | 137 | 217 | 1.91e-11 | 63.9 |
| Msa0136150 | AT2G20180.7 | 47.368 | 57 | 30 | 0 | 231 | 287 | 214 | 270 | 6.33e-11 | 63.2 |
| Msa0136150 | AT2G20180.1 | 47.368 | 57 | 30 | 0 | 231 | 287 | 214 | 270 | 6.33e-11 | 63.2 |
| Msa0136150 | AT2G20180.5 | 47.368 | 57 | 30 | 0 | 231 | 287 | 214 | 270 | 6.33e-11 | 63.2 |
| Msa0136150 | AT2G20180.4 | 47.368 | 57 | 30 | 0 | 231 | 287 | 285 | 341 | 7.10e-11 | 63.2 |
| Msa0136150 | AT2G20180.6 | 47.368 | 57 | 30 | 0 | 231 | 287 | 285 | 341 | 7.10e-11 | 63.2 |
| Msa0136150 | AT2G20180.2 | 47.368 | 57 | 30 | 0 | 231 | 287 | 285 | 341 | 7.10e-11 | 63.2 |
| Msa0136150 | AT2G20180.3 | 47.368 | 57 | 30 | 0 | 231 | 287 | 285 | 341 | 7.10e-11 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTTAGTCCTCAATATT+TGG | 0.162834 | 1_3:-67943270 | Msa0136150:CDS |
| TTGCTCATAGAAGCAGATTT+TGG | 0.214748 | 1_3:+67942952 | None:intergenic |
| CAAATATTGAGGACTAAATT+TGG | 0.216033 | 1_3:+67943271 | None:intergenic |
| GCTTACAATGGAATGAATAT+TGG | 0.254169 | 1_3:-67942037 | Msa0136150:CDS |
| CCCATTCTTCAGAAATCAAT+TGG | 0.299308 | 1_3:+67943549 | None:intergenic |
| TTCATTCCATTGTAAGCAAT+TGG | 0.326950 | 1_3:+67942043 | None:intergenic |
| CCCAATTGATTTCTGAAGAA+TGG | 0.332468 | 1_3:-67943550 | Msa0136150:CDS |
| GAAGCTACCTTTGTTCCATT+TGG | 0.350337 | 1_3:+67942355 | None:intergenic |
| CAGTACTTGTGCTACTCCCT+TGG | 0.355284 | 1_3:+67943402 | None:intergenic |
| AATGATAGCATTGATCATAA+AGG | 0.357619 | 1_3:-67943221 | Msa0136150:CDS |
| AAGCTACCTTTGTTCCATTT+GGG | 0.369150 | 1_3:+67942356 | None:intergenic |
| CCAATTGATTTCTGAAGAAT+GGG | 0.373736 | 1_3:-67943549 | Msa0136150:CDS |
| ATGTTTAGAGCCAGTGAAAC+TGG | 0.383865 | 1_3:-67943195 | Msa0136150:CDS |
| CTACCTAAGTTGGGTGCCTC+AGG | 0.386763 | 1_3:+67942835 | None:intergenic |
| GAAGAATGGGATTCTCTTAG+TGG | 0.394320 | 1_3:-67943536 | Msa0136150:CDS |
| ATGATAGCATTGATCATAAA+GGG | 0.425204 | 1_3:-67943220 | Msa0136150:CDS |
| TTCATGAATCAGTTCCTTAG+TGG | 0.426280 | 1_3:-67943488 | Msa0136150:CDS |
| GGTAGAAAATCAAGAGCAAC+AGG | 0.428540 | 1_3:-67942817 | Msa0136150:CDS |
| CTTCTATCCTCTTCTGAACA+AGG | 0.432681 | 1_3:+67943134 | None:intergenic |
| TGGAACCTACTCATGTGATT+TGG | 0.438360 | 1_3:-67943339 | Msa0136150:CDS |
| TGCAGGTCTTAGAAAACATT+AGG | 0.448557 | 1_3:-67942987 | Msa0136150:intron |
| CCTTTGTTCCATTTGGGACA+AGG | 0.453226 | 1_3:+67942362 | None:intergenic |
| TTGCAAACCCTTGTCCCAAA+TGG | 0.465028 | 1_3:-67942370 | Msa0136150:CDS |
| ACTTGTAGTGGTGGTAGAAA+AGG | 0.466992 | 1_3:+67943364 | None:intergenic |
| CTTTGTTCCATTTGGGACAA+GGG | 0.489847 | 1_3:+67942363 | None:intergenic |
| ATGTTATCATCCAAATATTG+AGG | 0.490926 | 1_3:+67943260 | None:intergenic |
| GAACCTGAGGCACCCAACTT+AGG | 0.497691 | 1_3:-67942838 | Msa0136150:CDS |
| AGTACTTGTGCTACTCCCTT+GGG | 0.501223 | 1_3:+67943403 | None:intergenic |
| AAGATTTAGGAGCTCAATAG+AGG | 0.507018 | 1_3:-67943087 | Msa0136150:intron |
| GCAGCAAGAACCAGTTTCAC+TGG | 0.514887 | 1_3:+67943185 | None:intergenic |
| TTCTGAACCTTGTTCAGAAG+AGG | 0.517904 | 1_3:-67943141 | Msa0136150:CDS |
| TGTTGCCAAATCACATGAGT+AGG | 0.518267 | 1_3:+67943334 | None:intergenic |
| ATGCTCTGTGCATCAGTGGC+AGG | 0.521454 | 1_3:+67942790 | None:intergenic |
| TCACATGTTGACTCAATTGG+AGG | 0.523673 | 1_3:-67942886 | Msa0136150:CDS |
| TGCTAACAATGAAATGATGA+TGG | 0.528083 | 1_3:-67943165 | Msa0136150:CDS |
| TCTTCAGAAATCAATTGGGC+AGG | 0.532125 | 1_3:+67943554 | None:intergenic |
| CCATTCTTCAGAAATCAATT+GGG | 0.537373 | 1_3:+67943550 | None:intergenic |
| TCTACCACCACTACAAGTAG+TGG | 0.548620 | 1_3:-67943359 | Msa0136150:CDS |
| TCAGCATGAGGAAAGTAAGA+TGG | 0.571753 | 1_3:+67943440 | None:intergenic |
| TTCTGAGCTCAGAAGATATG+TGG | 0.585124 | 1_3:-67942075 | Msa0136150:CDS |
| TTCTATGAGCAACAATGAAG+AGG | 0.588809 | 1_3:-67942941 | Msa0136150:CDS |
| TATGCTCCAATTGCTTACAA+TGG | 0.606083 | 1_3:-67942049 | Msa0136150:CDS |
| GAAGAGGACTTAATGTGGCA+TGG | 0.606487 | 1_3:-67942925 | Msa0136150:CDS |
| AGATATTAGCACTATGCTTG+AGG | 0.620150 | 1_3:-67942250 | Msa0136150:CDS |
| CCTTGTCCCAAATGGAACAA+AGG | 0.623499 | 1_3:-67942362 | Msa0136150:intron |
| GGTTCCACTACTTGTAGTGG+TGG | 0.630243 | 1_3:+67943355 | None:intergenic |
| GTAGGTTCCACTACTTGTAG+TGG | 0.640555 | 1_3:+67943352 | None:intergenic |
| TCTGAGCCTAAAAGAACCTG+AGG | 0.648501 | 1_3:-67942851 | Msa0136150:CDS |
| AAACACATAAAATCAGCATG+AGG | 0.655266 | 1_3:+67943428 | None:intergenic |
| TAGTGGACAGTACACAGCTG+AGG | 0.680277 | 1_3:-67943519 | Msa0136150:CDS |
| ACAATGAAGAGGACTTAATG+TGG | 0.680942 | 1_3:-67942930 | Msa0136150:CDS |
| ATAAATGCTCTGTGCATCAG+TGG | 0.693217 | 1_3:+67942786 | None:intergenic |
| TAGTTGTAGAAGAAAAGCTG+AGG | 0.699528 | 1_3:+67942008 | None:intergenic |
| AGAAAATCAAGAGCAACAGG+TGG | 0.715777 | 1_3:-67942814 | Msa0136150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCACTATATTAAATTTTGTT+TGG | - | chr1_3:67942872-67942891 | Msa0136150:CDS | 15.0% |
| !! | TGAAAAATTGATATCATATT+TGG | + | chr1_3:67943412-67943431 | None:intergenic | 15.0% |
| !!! | TCACTATATTAAATTTTGTT+TGG | - | chr1_3:67942872-67942891 | Msa0136150:CDS | 15.0% |
| !! | TGAAAAATTGATATCATATT+TGG | + | chr1_3:67943412-67943431 | None:intergenic | 15.0% |
| !!! | TTGTATTTTTATTACCACTA+AGG | + | chr1_3:67942092-67942111 | None:intergenic | 20.0% |
| !!! | GGTAATAAAAATACAAGTTT+TGG | - | chr1_3:67942096-67942115 | Msa0136150:intron | 20.0% |
| !! | ATTTAATATAGTGACAACAA+TGG | + | chr1_3:67942866-67942885 | None:intergenic | 20.0% |
| !!! | ACTATTTTCAAATAAACTAC+TGG | - | chr1_3:67942961-67942980 | Msa0136150:CDS | 20.0% |
| !! | TTCAAATAAGTGAATACAAA+AGG | - | chr1_3:67943063-67943082 | Msa0136150:intron | 20.0% |
| !! | AGTTCAATTTCCATTAATTA+AGG | + | chr1_3:67943233-67943252 | None:intergenic | 20.0% |
| !! | ATGGAAATTGAACTAAAAAT+TGG | - | chr1_3:67943239-67943258 | Msa0136150:CDS | 20.0% |
| !! | ATTGAACTAAAAATTGGTTA+AGG | - | chr1_3:67943245-67943264 | Msa0136150:CDS | 20.0% |
| !!! | AATTTTTCATTGTGAATTGT+AGG | - | chr1_3:67943289-67943308 | Msa0136150:CDS | 20.0% |
| !!! | TTGTATTTTTATTACCACTA+AGG | + | chr1_3:67942092-67942111 | None:intergenic | 20.0% |
| !!! | GGTAATAAAAATACAAGTTT+TGG | - | chr1_3:67942096-67942115 | Msa0136150:intron | 20.0% |
| !! | ATTTAATATAGTGACAACAA+TGG | + | chr1_3:67942866-67942885 | None:intergenic | 20.0% |
| !!! | ACTATTTTCAAATAAACTAC+TGG | - | chr1_3:67942961-67942980 | Msa0136150:CDS | 20.0% |
| !! | TTCAAATAAGTGAATACAAA+AGG | - | chr1_3:67943063-67943082 | Msa0136150:intron | 20.0% |
| !! | AGTTCAATTTCCATTAATTA+AGG | + | chr1_3:67943233-67943252 | None:intergenic | 20.0% |
| !! | ATGGAAATTGAACTAAAAAT+TGG | - | chr1_3:67943239-67943258 | Msa0136150:CDS | 20.0% |
| !! | ATTGAACTAAAAATTGGTTA+AGG | - | chr1_3:67943245-67943264 | Msa0136150:CDS | 20.0% |
| !!! | AATTTTTCATTGTGAATTGT+AGG | - | chr1_3:67943289-67943308 | Msa0136150:CDS | 20.0% |
| ! | ATCTTCCAAACAAAAAAACA+TGG | + | chr1_3:67942271-67942290 | None:intergenic | 25.0% |
| ! | CAAATATTGAGGACTAAATT+TGG | + | chr1_3:67942295-67942314 | None:intergenic | 25.0% |
| ! | CAAATTTAGTCCTCAATATT+TGG | - | chr1_3:67942293-67942312 | Msa0136150:intron | 25.0% |
| ! | ATGTTATCATCCAAATATTG+AGG | + | chr1_3:67942306-67942325 | None:intergenic | 25.0% |
| !!! | AATGATAGCATTGATCATAA+AGG | - | chr1_3:67942342-67942361 | Msa0136150:intron | 25.0% |
| !!! | ATGATAGCATTGATCATAAA+GGG | - | chr1_3:67942343-67942362 | Msa0136150:intron | 25.0% |
| !! | TGATCATAATTTTACTATGC+AGG | - | chr1_3:67942559-67942578 | Msa0136150:intron | 25.0% |
| ! | AACATGTGAAAAACAGTTAT+TGG | + | chr1_3:67942666-67942685 | None:intergenic | 25.0% |
| ! | AATTCATCATGATTCTATTG+CGG | + | chr1_3:67942833-67942852 | None:intergenic | 25.0% |
| ! | ATTTGGATATCGAATAATGA+AGG | + | chr1_3:67943395-67943414 | None:intergenic | 25.0% |
| ! | ATCTTCCAAACAAAAAAACA+TGG | + | chr1_3:67942271-67942290 | None:intergenic | 25.0% |
| ! | CAAATATTGAGGACTAAATT+TGG | + | chr1_3:67942295-67942314 | None:intergenic | 25.0% |
| ! | CAAATTTAGTCCTCAATATT+TGG | - | chr1_3:67942293-67942312 | Msa0136150:intron | 25.0% |
| ! | ATGTTATCATCCAAATATTG+AGG | + | chr1_3:67942306-67942325 | None:intergenic | 25.0% |
| !!! | AATGATAGCATTGATCATAA+AGG | - | chr1_3:67942342-67942361 | Msa0136150:intron | 25.0% |
| !!! | ATGATAGCATTGATCATAAA+GGG | - | chr1_3:67942343-67942362 | Msa0136150:intron | 25.0% |
| !! | TGATCATAATTTTACTATGC+AGG | - | chr1_3:67942559-67942578 | Msa0136150:intron | 25.0% |
| ! | AACATGTGAAAAACAGTTAT+TGG | + | chr1_3:67942666-67942685 | None:intergenic | 25.0% |
| ! | AATTCATCATGATTCTATTG+CGG | + | chr1_3:67942833-67942852 | None:intergenic | 25.0% |
| ! | ATTTGGATATCGAATAATGA+AGG | + | chr1_3:67943395-67943414 | None:intergenic | 25.0% |
| CCATTCTTCAGAAATCAATT+GGG | + | chr1_3:67942016-67942035 | None:intergenic | 30.0% | |
| ! | CCAATTGATTTCTGAAGAAT+GGG | - | chr1_3:67942014-67942033 | Msa0136150:CDS | 30.0% |
| AAACACATAAAATCAGCATG+AGG | + | chr1_3:67942138-67942157 | None:intergenic | 30.0% | |
| ! | ATTTTATGTGTTTCTCCCAA+GGG | - | chr1_3:67942145-67942164 | Msa0136150:intron | 30.0% |
| !!! | ACTGTCCATGTTTTTTTGTT+TGG | - | chr1_3:67942263-67942282 | Msa0136150:intron | 30.0% |
| TGCTAACAATGAAATGATGA+TGG | - | chr1_3:67942398-67942417 | Msa0136150:CDS | 30.0% | |
| !!! | TTTTCACATGTTGACTCAAT+TGG | - | chr1_3:67942674-67942693 | Msa0136150:intron | 30.0% |
| ! | CTTGATTTTCTACCTAAGTT+GGG | + | chr1_3:67942740-67942759 | None:intergenic | 30.0% |
| ! | TCTTGATTTTCTACCTAAGT+TGG | + | chr1_3:67942741-67942760 | None:intergenic | 30.0% |
| CTAAATAAGTCTCTCATGAA+AGG | - | chr1_3:67943112-67943131 | Msa0136150:CDS | 30.0% | |
| AAGGTAGCTTCCTTAATTAA+TGG | - | chr1_3:67943220-67943239 | Msa0136150:CDS | 30.0% | |
| ! | GTTTTTGCAGCATCAAATTA+AGG | - | chr1_3:67943355-67943374 | Msa0136150:CDS | 30.0% |
| TTCATTCCATTGTAAGCAAT+TGG | + | chr1_3:67943523-67943542 | None:intergenic | 30.0% | |
| GCTTACAATGGAATGAATAT+TGG | - | chr1_3:67943526-67943545 | Msa0136150:CDS | 30.0% | |
| CCATTCTTCAGAAATCAATT+GGG | + | chr1_3:67942016-67942035 | None:intergenic | 30.0% | |
| ! | CCAATTGATTTCTGAAGAAT+GGG | - | chr1_3:67942014-67942033 | Msa0136150:CDS | 30.0% |
| AAACACATAAAATCAGCATG+AGG | + | chr1_3:67942138-67942157 | None:intergenic | 30.0% | |
| ! | ATTTTATGTGTTTCTCCCAA+GGG | - | chr1_3:67942145-67942164 | Msa0136150:intron | 30.0% |
| !!! | ACTGTCCATGTTTTTTTGTT+TGG | - | chr1_3:67942263-67942282 | Msa0136150:intron | 30.0% |
| TGCTAACAATGAAATGATGA+TGG | - | chr1_3:67942398-67942417 | Msa0136150:CDS | 30.0% | |
| !!! | TTTTCACATGTTGACTCAAT+TGG | - | chr1_3:67942674-67942693 | Msa0136150:intron | 30.0% |
| ! | CTTGATTTTCTACCTAAGTT+GGG | + | chr1_3:67942740-67942759 | None:intergenic | 30.0% |
| ! | TCTTGATTTTCTACCTAAGT+TGG | + | chr1_3:67942741-67942760 | None:intergenic | 30.0% |
| CTAAATAAGTCTCTCATGAA+AGG | - | chr1_3:67943112-67943131 | Msa0136150:CDS | 30.0% | |
| AAGGTAGCTTCCTTAATTAA+TGG | - | chr1_3:67943220-67943239 | Msa0136150:CDS | 30.0% | |
| ! | GTTTTTGCAGCATCAAATTA+AGG | - | chr1_3:67943355-67943374 | Msa0136150:CDS | 30.0% |
| TTCATTCCATTGTAAGCAAT+TGG | + | chr1_3:67943523-67943542 | None:intergenic | 30.0% | |
| GCTTACAATGGAATGAATAT+TGG | - | chr1_3:67943526-67943545 | Msa0136150:CDS | 30.0% | |
| ! | CCCAATTGATTTCTGAAGAA+TGG | - | chr1_3:67942013-67942032 | Msa0136150:CDS | 35.0% |
| CCCATTCTTCAGAAATCAAT+TGG | + | chr1_3:67942017-67942036 | None:intergenic | 35.0% | |
| TTCATGAATCAGTTCCTTAG+TGG | - | chr1_3:67942075-67942094 | Msa0136150:CDS | 35.0% | |
| ! | GATTTTATGTGTTTCTCCCA+AGG | - | chr1_3:67942144-67942163 | Msa0136150:intron | 35.0% |
| AGAGGATAGAAGCAAAAACA+TGG | - | chr1_3:67942440-67942459 | Msa0136150:intron | 35.0% | |
| AGAACCCTGCAAAAAGATTT+AGG | - | chr1_3:67942463-67942482 | Msa0136150:intron | 35.0% | |
| ! | AGCTCCTAAATCTTTTTGCA+GGG | + | chr1_3:67942470-67942489 | None:intergenic | 35.0% |
| AAGATTTAGGAGCTCAATAG+AGG | - | chr1_3:67942476-67942495 | Msa0136150:intron | 35.0% | |
| TGCAGGTCTTAGAAAACATT+AGG | - | chr1_3:67942576-67942595 | Msa0136150:intron | 35.0% | |
| ! | TTGCTCATAGAAGCAGATTT+TGG | + | chr1_3:67942614-67942633 | None:intergenic | 35.0% |
| TTCTATGAGCAACAATGAAG+AGG | - | chr1_3:67942622-67942641 | Msa0136150:intron | 35.0% | |
| ACAATGAAGAGGACTTAATG+TGG | - | chr1_3:67942633-67942652 | Msa0136150:intron | 35.0% | |
| AGTGTCACAAGTGTTTATGT+CGG | - | chr1_3:67943032-67943051 | Msa0136150:intron | 35.0% | |
| AAGCTACCTTTGTTCCATTT+GGG | + | chr1_3:67943210-67943229 | None:intergenic | 35.0% | |
| AGATATTAGCACTATGCTTG+AGG | - | chr1_3:67943313-67943332 | Msa0136150:CDS | 35.0% | |
| GCTGCAAAAACTTCACATAT+TGG | + | chr1_3:67943346-67943365 | None:intergenic | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1_3:67943514-67943533 | Msa0136150:CDS | 35.0% | |
| TAGTTGTAGAAGAAAAGCTG+AGG | + | chr1_3:67943558-67943577 | None:intergenic | 35.0% | |
| ! | CCCAATTGATTTCTGAAGAA+TGG | - | chr1_3:67942013-67942032 | Msa0136150:CDS | 35.0% |
| CCCATTCTTCAGAAATCAAT+TGG | + | chr1_3:67942017-67942036 | None:intergenic | 35.0% | |
| TTCATGAATCAGTTCCTTAG+TGG | - | chr1_3:67942075-67942094 | Msa0136150:CDS | 35.0% | |
| ! | GATTTTATGTGTTTCTCCCA+AGG | - | chr1_3:67942144-67942163 | Msa0136150:intron | 35.0% |
| AGAGGATAGAAGCAAAAACA+TGG | - | chr1_3:67942440-67942459 | Msa0136150:intron | 35.0% | |
| AGAACCCTGCAAAAAGATTT+AGG | - | chr1_3:67942463-67942482 | Msa0136150:intron | 35.0% | |
| ! | AGCTCCTAAATCTTTTTGCA+GGG | + | chr1_3:67942470-67942489 | None:intergenic | 35.0% |
| AAGATTTAGGAGCTCAATAG+AGG | - | chr1_3:67942476-67942495 | Msa0136150:intron | 35.0% | |
| TGCAGGTCTTAGAAAACATT+AGG | - | chr1_3:67942576-67942595 | Msa0136150:intron | 35.0% | |
| ! | TTGCTCATAGAAGCAGATTT+TGG | + | chr1_3:67942614-67942633 | None:intergenic | 35.0% |
| TTCTATGAGCAACAATGAAG+AGG | - | chr1_3:67942622-67942641 | Msa0136150:intron | 35.0% | |
| ACAATGAAGAGGACTTAATG+TGG | - | chr1_3:67942633-67942652 | Msa0136150:intron | 35.0% | |
| AGTGTCACAAGTGTTTATGT+CGG | - | chr1_3:67943032-67943051 | Msa0136150:intron | 35.0% | |
| AAGCTACCTTTGTTCCATTT+GGG | + | chr1_3:67943210-67943229 | None:intergenic | 35.0% | |
| AGATATTAGCACTATGCTTG+AGG | - | chr1_3:67943313-67943332 | Msa0136150:CDS | 35.0% | |
| GCTGCAAAAACTTCACATAT+TGG | + | chr1_3:67943346-67943365 | None:intergenic | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1_3:67943514-67943533 | Msa0136150:CDS | 35.0% | |
| TAGTTGTAGAAGAAAAGCTG+AGG | + | chr1_3:67943558-67943577 | None:intergenic | 35.0% | |
| TCTTCAGAAATCAATTGGGC+AGG | + | chr1_3:67942012-67942031 | None:intergenic | 40.0% | |
| GAAGAATGGGATTCTCTTAG+TGG | - | chr1_3:67942027-67942046 | Msa0136150:CDS | 40.0% | |
| TCAGCATGAGGAAAGTAAGA+TGG | + | chr1_3:67942126-67942145 | None:intergenic | 40.0% | |
| ACTTGTAGTGGTGGTAGAAA+AGG | + | chr1_3:67942202-67942221 | None:intergenic | 40.0% | |
| TGGAACCTACTCATGTGATT+TGG | - | chr1_3:67942224-67942243 | Msa0136150:CDS | 40.0% | |
| TGTTGCCAAATCACATGAGT+AGG | + | chr1_3:67942232-67942251 | None:intergenic | 40.0% | |
| ! | ATGTTTAGAGCCAGTGAAAC+TGG | - | chr1_3:67942368-67942387 | Msa0136150:CDS | 40.0% |
| TTCTGAACCTTGTTCAGAAG+AGG | - | chr1_3:67942422-67942441 | Msa0136150:intron | 40.0% | |
| CTTCTATCCTCTTCTGAACA+AGG | + | chr1_3:67942432-67942451 | None:intergenic | 40.0% | |
| ! | GAGCTCCTAAATCTTTTTGC+AGG | + | chr1_3:67942471-67942490 | None:intergenic | 40.0% |
| !! | TCACATGTTGACTCAATTGG+AGG | - | chr1_3:67942677-67942696 | Msa0136150:intron | 40.0% |
| GGTAGAAAATCAAGAGCAAC+AGG | - | chr1_3:67942746-67942765 | Msa0136150:intron | 40.0% | |
| AGAAAATCAAGAGCAACAGG+TGG | - | chr1_3:67942749-67942768 | Msa0136150:intron | 40.0% | |
| ATAAATGCTCTGTGCATCAG+TGG | + | chr1_3:67942780-67942799 | None:intergenic | 40.0% | |
| TTGCGGAAATGTCACTCAAA+TGG | + | chr1_3:67942816-67942835 | None:intergenic | 40.0% | |
| ! | CTTTGTTCCATTTGGGACAA+GGG | + | chr1_3:67943203-67943222 | None:intergenic | 40.0% |
| GAAGCTACCTTTGTTCCATT+TGG | + | chr1_3:67943211-67943230 | None:intergenic | 40.0% | |
| TTCTGAGCTCAGAAGATATG+TGG | - | chr1_3:67943488-67943507 | Msa0136150:CDS | 40.0% | |
| TCTTCAGAAATCAATTGGGC+AGG | + | chr1_3:67942012-67942031 | None:intergenic | 40.0% | |
| GAAGAATGGGATTCTCTTAG+TGG | - | chr1_3:67942027-67942046 | Msa0136150:CDS | 40.0% | |
| TCAGCATGAGGAAAGTAAGA+TGG | + | chr1_3:67942126-67942145 | None:intergenic | 40.0% | |
| ACTTGTAGTGGTGGTAGAAA+AGG | + | chr1_3:67942202-67942221 | None:intergenic | 40.0% | |
| TGGAACCTACTCATGTGATT+TGG | - | chr1_3:67942224-67942243 | Msa0136150:CDS | 40.0% | |
| TGTTGCCAAATCACATGAGT+AGG | + | chr1_3:67942232-67942251 | None:intergenic | 40.0% | |
| ! | ATGTTTAGAGCCAGTGAAAC+TGG | - | chr1_3:67942368-67942387 | Msa0136150:CDS | 40.0% |
| TTCTGAACCTTGTTCAGAAG+AGG | - | chr1_3:67942422-67942441 | Msa0136150:intron | 40.0% | |
| CTTCTATCCTCTTCTGAACA+AGG | + | chr1_3:67942432-67942451 | None:intergenic | 40.0% | |
| ! | GAGCTCCTAAATCTTTTTGC+AGG | + | chr1_3:67942471-67942490 | None:intergenic | 40.0% |
| !! | TCACATGTTGACTCAATTGG+AGG | - | chr1_3:67942677-67942696 | Msa0136150:intron | 40.0% |
| GGTAGAAAATCAAGAGCAAC+AGG | - | chr1_3:67942746-67942765 | Msa0136150:intron | 40.0% | |
| AGAAAATCAAGAGCAACAGG+TGG | - | chr1_3:67942749-67942768 | Msa0136150:intron | 40.0% | |
| ATAAATGCTCTGTGCATCAG+TGG | + | chr1_3:67942780-67942799 | None:intergenic | 40.0% | |
| TTGCGGAAATGTCACTCAAA+TGG | + | chr1_3:67942816-67942835 | None:intergenic | 40.0% | |
| ! | CTTTGTTCCATTTGGGACAA+GGG | + | chr1_3:67943203-67943222 | None:intergenic | 40.0% |
| GAAGCTACCTTTGTTCCATT+TGG | + | chr1_3:67943211-67943230 | None:intergenic | 40.0% | |
| TTCTGAGCTCAGAAGATATG+TGG | - | chr1_3:67943488-67943507 | Msa0136150:CDS | 40.0% | |
| ! | AGTACTTGTGCTACTCCCTT+GGG | + | chr1_3:67942163-67942182 | None:intergenic | 45.0% |
| TCTACCACCACTACAAGTAG+TGG | - | chr1_3:67942204-67942223 | Msa0136150:intron | 45.0% | |
| GTAGGTTCCACTACTTGTAG+TGG | + | chr1_3:67942214-67942233 | None:intergenic | 45.0% | |
| GAAGAGGACTTAATGTGGCA+TGG | - | chr1_3:67942638-67942657 | Msa0136150:intron | 45.0% | |
| TCTGAGCCTAAAAGAACCTG+AGG | - | chr1_3:67942712-67942731 | Msa0136150:intron | 45.0% | |
| TTGCAAACCCTTGTCCCAAA+TGG | - | chr1_3:67943193-67943212 | Msa0136150:CDS | 45.0% | |
| ! | CCTTTGTTCCATTTGGGACA+AGG | + | chr1_3:67943204-67943223 | None:intergenic | 45.0% |
| CCTTGTCCCAAATGGAACAA+AGG | - | chr1_3:67943201-67943220 | Msa0136150:CDS | 45.0% | |
| ! | AGTACTTGTGCTACTCCCTT+GGG | + | chr1_3:67942163-67942182 | None:intergenic | 45.0% |
| TCTACCACCACTACAAGTAG+TGG | - | chr1_3:67942204-67942223 | Msa0136150:intron | 45.0% | |
| GTAGGTTCCACTACTTGTAG+TGG | + | chr1_3:67942214-67942233 | None:intergenic | 45.0% | |
| GAAGAGGACTTAATGTGGCA+TGG | - | chr1_3:67942638-67942657 | Msa0136150:intron | 45.0% | |
| TCTGAGCCTAAAAGAACCTG+AGG | - | chr1_3:67942712-67942731 | Msa0136150:intron | 45.0% | |
| TTGCAAACCCTTGTCCCAAA+TGG | - | chr1_3:67943193-67943212 | Msa0136150:CDS | 45.0% | |
| ! | CCTTTGTTCCATTTGGGACA+AGG | + | chr1_3:67943204-67943223 | None:intergenic | 45.0% |
| CCTTGTCCCAAATGGAACAA+AGG | - | chr1_3:67943201-67943220 | Msa0136150:CDS | 45.0% | |
| !! | GATTAATTTATTTATTTATT+TGG | - | chr1_3:67943455-67943474 | Msa0136150:CDS | 5.0% |
| !! | GATTAATTTATTTATTTATT+TGG | - | chr1_3:67943455-67943474 | Msa0136150:CDS | 5.0% |
| ! | TAGTGGACAGTACACAGCTG+AGG | - | chr1_3:67942044-67942063 | Msa0136150:CDS | 50.0% |
| ! | CAGTACTTGTGCTACTCCCT+TGG | + | chr1_3:67942164-67942183 | None:intergenic | 50.0% |
| GGTTCCACTACTTGTAGTGG+TGG | + | chr1_3:67942211-67942230 | None:intergenic | 50.0% | |
| GCAGCAAGAACCAGTTTCAC+TGG | + | chr1_3:67942381-67942400 | None:intergenic | 50.0% | |
| ! | TGGGTGCCTCAGGTTCTTTT+AGG | + | chr1_3:67942721-67942740 | None:intergenic | 50.0% |
| ! | TAGTGGACAGTACACAGCTG+AGG | - | chr1_3:67942044-67942063 | Msa0136150:CDS | 50.0% |
| ! | CAGTACTTGTGCTACTCCCT+TGG | + | chr1_3:67942164-67942183 | None:intergenic | 50.0% |
| GGTTCCACTACTTGTAGTGG+TGG | + | chr1_3:67942211-67942230 | None:intergenic | 50.0% | |
| GCAGCAAGAACCAGTTTCAC+TGG | + | chr1_3:67942381-67942400 | None:intergenic | 50.0% | |
| ! | TGGGTGCCTCAGGTTCTTTT+AGG | + | chr1_3:67942721-67942740 | None:intergenic | 50.0% |
| ! | GAACCTGAGGCACCCAACTT+AGG | - | chr1_3:67942725-67942744 | Msa0136150:intron | 55.0% |
| ! | CTACCTAAGTTGGGTGCCTC+AGG | + | chr1_3:67942731-67942750 | None:intergenic | 55.0% |
| ATGCTCTGTGCATCAGTGGC+AGG | + | chr1_3:67942776-67942795 | None:intergenic | 55.0% | |
| ! | GAACCTGAGGCACCCAACTT+AGG | - | chr1_3:67942725-67942744 | Msa0136150:intron | 55.0% |
| ! | CTACCTAAGTTGGGTGCCTC+AGG | + | chr1_3:67942731-67942750 | None:intergenic | 55.0% |
| ATGCTCTGTGCATCAGTGGC+AGG | + | chr1_3:67942776-67942795 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 67942003 | 67943582 | 67942003 | ID=Msa0136150;Name=Msa0136150 |
| chr1_3 | mRNA | 67942003 | 67943582 | 67942003 | ID=Msa0136150-mRNA-1;Parent=Msa0136150;Name=Msa0136150-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|5|0|315 |
| chr1_3 | exon | 67943088 | 67943582 | 67943088 | ID=Msa0136150-mRNA-1:exon:23443;Parent=Msa0136150-mRNA-1 |
| chr1_3 | exon | 67942780 | 67943004 | 67942780 | ID=Msa0136150-mRNA-1:exon:23442;Parent=Msa0136150-mRNA-1 |
| chr1_3 | exon | 67942363 | 67942428 | 67942363 | ID=Msa0136150-mRNA-1:exon:23441;Parent=Msa0136150-mRNA-1 |
| chr1_3 | exon | 67942209 | 67942274 | 67942209 | ID=Msa0136150-mRNA-1:exon:23440;Parent=Msa0136150-mRNA-1 |
| chr1_3 | exon | 67942003 | 67942098 | 67942003 | ID=Msa0136150-mRNA-1:exon:23439;Parent=Msa0136150-mRNA-1 |
| chr1_3 | CDS | 67943088 | 67943582 | 67943088 | ID=Msa0136150-mRNA-1:cds;Parent=Msa0136150-mRNA-1 |
| chr1_3 | CDS | 67942780 | 67943004 | 67942780 | ID=Msa0136150-mRNA-1:cds;Parent=Msa0136150-mRNA-1 |
| chr1_3 | CDS | 67942363 | 67942428 | 67942363 | ID=Msa0136150-mRNA-1:cds;Parent=Msa0136150-mRNA-1 |
| chr1_3 | CDS | 67942209 | 67942274 | 67942209 | ID=Msa0136150-mRNA-1:cds;Parent=Msa0136150-mRNA-1 |
| chr1_3 | CDS | 67942003 | 67942098 | 67942003 | ID=Msa0136150-mRNA-1:cds;Parent=Msa0136150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
