Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136160 | XP_003592481.1 | 69.935 | 306 | 59 | 3 | 1 | 293 | 1 | 286 | 1.98e-137 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136160 | sp|Q7XHI9|BH084_ARATH | 38.650 | 326 | 156 | 11 | 10 | 294 | 6 | 328 | 3.25e-48 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136160 | G7IET1 | 69.935 | 306 | 59 | 3 | 1 | 293 | 1 | 286 | 9.44e-138 | 400 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0136160 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136160 | MtrunA17_Chr1g0207311 | 69.935 | 306 | 59 | 3 | 1 | 293 | 1 | 286 | 1.82e-141 | 400 |
| Msa0136160 | MtrunA17_Chr5g0393721 | 46.588 | 337 | 120 | 14 | 1 | 297 | 1 | 317 | 4.14e-72 | 225 |
| Msa0136160 | MtrunA17_Chr1g0207301 | 40.476 | 336 | 152 | 8 | 1 | 295 | 51 | 379 | 1.07e-61 | 200 |
| Msa0136160 | MtrunA17_Chr3g0134741 | 51.149 | 174 | 78 | 3 | 119 | 287 | 142 | 313 | 5.53e-48 | 162 |
| Msa0136160 | MtrunA17_Chr1g0207321 | 70.192 | 104 | 27 | 1 | 23 | 122 | 24 | 127 | 6.06e-43 | 143 |
| Msa0136160 | MtrunA17_Chr1g0152651 | 81.818 | 77 | 14 | 0 | 202 | 278 | 273 | 349 | 2.33e-38 | 139 |
| Msa0136160 | MtrunA17_Chr5g0435021 | 52.809 | 89 | 41 | 1 | 183 | 271 | 199 | 286 | 1.87e-24 | 100 |
| Msa0136160 | MtrunA17_Chr8g0384141 | 55.072 | 69 | 31 | 0 | 199 | 267 | 110 | 178 | 5.04e-18 | 82.0 |
| Msa0136160 | MtrunA17_Chr4g0074161 | 56.716 | 67 | 29 | 0 | 200 | 266 | 203 | 269 | 2.88e-17 | 81.3 |
| Msa0136160 | MtrunA17_Chr3g0134001 | 42.056 | 107 | 56 | 2 | 193 | 297 | 163 | 265 | 3.01e-17 | 79.7 |
| Msa0136160 | MtrunA17_Chr1g0190731 | 53.425 | 73 | 34 | 0 | 194 | 266 | 184 | 256 | 9.49e-17 | 79.3 |
| Msa0136160 | MtrunA17_Chr7g0243041 | 56.364 | 55 | 24 | 0 | 210 | 264 | 33 | 87 | 2.37e-15 | 72.0 |
| Msa0136160 | MtrunA17_Chr1g0193321 | 50.877 | 57 | 28 | 0 | 210 | 266 | 469 | 525 | 5.53e-14 | 72.4 |
| Msa0136160 | MtrunA17_Chr1g0153241 | 38.824 | 85 | 50 | 1 | 196 | 280 | 80 | 162 | 7.13e-14 | 70.1 |
| Msa0136160 | MtrunA17_Chr3g0095391 | 41.772 | 79 | 36 | 2 | 199 | 272 | 300 | 373 | 4.97e-13 | 68.9 |
| Msa0136160 | MtrunA17_Chr7g0234761 | 47.368 | 76 | 39 | 1 | 192 | 266 | 306 | 381 | 1.38e-12 | 67.8 |
| Msa0136160 | MtrunA17_Chr5g0402031 | 39.706 | 68 | 41 | 0 | 212 | 279 | 114 | 181 | 3.19e-12 | 66.2 |
| Msa0136160 | MtrunA17_Chr8g0339091 | 38.614 | 101 | 52 | 2 | 192 | 291 | 280 | 371 | 1.65e-11 | 64.7 |
| Msa0136160 | MtrunA17_Chr1g0182791 | 38.889 | 72 | 44 | 0 | 195 | 266 | 309 | 380 | 5.11e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136160 | AT2G14760.1 | 38.650 | 326 | 156 | 11 | 10 | 294 | 6 | 328 | 3.30e-49 | 166 |
| Msa0136160 | AT2G14760.3 | 37.168 | 339 | 156 | 12 | 10 | 294 | 6 | 341 | 1.73e-45 | 157 |
| Msa0136160 | AT5G43175.1 | 72.165 | 97 | 27 | 0 | 189 | 285 | 118 | 214 | 2.54e-45 | 153 |
| Msa0136160 | AT4G33880.1 | 36.782 | 348 | 143 | 13 | 10 | 285 | 6 | 348 | 1.50e-44 | 155 |
| Msa0136160 | AT1G27740.1 | 73.563 | 87 | 23 | 0 | 199 | 285 | 163 | 249 | 1.38e-41 | 144 |
| Msa0136160 | AT5G37800.1 | 48.980 | 98 | 45 | 2 | 174 | 271 | 177 | 269 | 2.56e-22 | 94.7 |
| Msa0136160 | AT1G66470.1 | 58.333 | 72 | 29 | 1 | 200 | 271 | 193 | 263 | 5.44e-22 | 94.0 |
| Msa0136160 | AT2G24260.2 | 51.852 | 81 | 39 | 0 | 197 | 277 | 29 | 109 | 1.76e-19 | 85.9 |
| Msa0136160 | AT2G24260.1 | 58.571 | 70 | 29 | 0 | 197 | 266 | 132 | 201 | 6.30e-19 | 86.3 |
| Msa0136160 | AT4G30980.1 | 57.143 | 70 | 30 | 0 | 197 | 266 | 124 | 193 | 1.25e-18 | 84.7 |
| Msa0136160 | AT4G30980.2 | 57.143 | 70 | 30 | 0 | 197 | 266 | 172 | 241 | 1.48e-18 | 85.1 |
| Msa0136160 | AT3G21330.1 | 50.617 | 81 | 35 | 2 | 185 | 265 | 256 | 331 | 1.99e-17 | 82.0 |
| Msa0136160 | AT5G58010.1 | 46.465 | 99 | 49 | 3 | 171 | 266 | 65 | 162 | 6.83e-17 | 79.7 |
| Msa0136160 | AT5G01305.1 | 51.613 | 62 | 30 | 0 | 201 | 262 | 35 | 96 | 7.26e-16 | 74.3 |
| Msa0136160 | AT4G00120.1 | 53.704 | 54 | 25 | 0 | 212 | 265 | 121 | 174 | 2.93e-15 | 73.2 |
| Msa0136160 | AT1G09530.3 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 2.81e-13 | 70.5 |
| Msa0136160 | AT1G09530.2 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 2.81e-13 | 70.5 |
| Msa0136160 | AT1G09530.5 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 2.81e-13 | 70.5 |
| Msa0136160 | AT1G09530.1 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 2.81e-13 | 70.5 |
| Msa0136160 | AT1G09530.4 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 2.81e-13 | 70.5 |
| Msa0136160 | AT1G09530.6 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 2.81e-13 | 70.5 |
| Msa0136160 | AT5G50915.1 | 36.076 | 158 | 87 | 6 | 139 | 287 | 65 | 217 | 5.58e-13 | 68.2 |
| Msa0136160 | AT5G50915.2 | 36.076 | 158 | 87 | 6 | 139 | 287 | 65 | 217 | 5.58e-13 | 68.2 |
| Msa0136160 | AT5G50915.3 | 36.076 | 158 | 87 | 6 | 139 | 287 | 65 | 217 | 6.23e-13 | 67.8 |
| Msa0136160 | AT5G50915.4 | 36.076 | 158 | 87 | 6 | 139 | 287 | 65 | 217 | 6.23e-13 | 67.8 |
| Msa0136160 | AT4G36930.1 | 37.838 | 74 | 46 | 0 | 210 | 283 | 198 | 271 | 1.29e-12 | 67.8 |
| Msa0136160 | AT3G23690.1 | 44.737 | 76 | 41 | 1 | 192 | 266 | 180 | 255 | 1.39e-11 | 64.7 |
| Msa0136160 | AT2G20180.7 | 47.368 | 57 | 30 | 0 | 210 | 266 | 214 | 270 | 1.75e-11 | 64.7 |
| Msa0136160 | AT2G20180.1 | 47.368 | 57 | 30 | 0 | 210 | 266 | 214 | 270 | 1.75e-11 | 64.7 |
| Msa0136160 | AT2G20180.5 | 47.368 | 57 | 30 | 0 | 210 | 266 | 214 | 270 | 1.75e-11 | 64.7 |
| Msa0136160 | AT2G20180.4 | 47.368 | 57 | 30 | 0 | 210 | 266 | 285 | 341 | 1.89e-11 | 64.7 |
| Msa0136160 | AT2G20180.6 | 47.368 | 57 | 30 | 0 | 210 | 266 | 285 | 341 | 1.89e-11 | 64.7 |
| Msa0136160 | AT2G20180.2 | 47.368 | 57 | 30 | 0 | 210 | 266 | 285 | 341 | 1.89e-11 | 64.7 |
| Msa0136160 | AT2G20180.3 | 47.368 | 57 | 30 | 0 | 210 | 266 | 285 | 341 | 1.89e-11 | 64.7 |
| Msa0136160 | AT5G48560.1 | 46.053 | 76 | 40 | 1 | 192 | 266 | 290 | 365 | 1.97e-11 | 64.7 |
| Msa0136160 | AT5G48560.2 | 46.053 | 76 | 40 | 1 | 192 | 266 | 290 | 365 | 2.13e-11 | 64.7 |
Find 64 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTTAGTCCACAATATT+TGG | 0.147520 | 1_3:-67949550 | Msa0136160:CDS |
| CAAATATTGTGGACTAAATT+TGG | 0.154244 | 1_3:+67949551 | None:intergenic |
| TGGCTCATAGAACCAGATTT+TGG | 0.215361 | 1_3:+67949153 | None:intergenic |
| TTCTCTTCTCCAACTAAATT+AGG | 0.240816 | 1_3:-67948262 | Msa0136160:CDS |
| GCTTACAATGGAATAAATAT+TGG | 0.247349 | 1_3:-67948298 | Msa0136160:CDS |
| TGGAACCCATTCATGTGATT+TGG | 0.268183 | 1_3:-67949619 | Msa0136160:CDS |
| GGAGGAAAACCTTCAATTCT+AGG | 0.282735 | 1_3:-67949051 | Msa0136160:CDS |
| CCCATTCTTCAGAAATCAAT+TGG | 0.299308 | 1_3:+67949751 | None:intergenic |
| CTACGCAACTTAGGTGCTTC+AGG | 0.318498 | 1_3:+67949018 | None:intergenic |
| CAGAAAATATAAGGAATGTT+AGG | 0.319597 | 1_3:-67949182 | Msa0136160:CDS |
| CCCAATTGATTTCTGAAGAA+TGG | 0.332468 | 1_3:-67949752 | Msa0136160:CDS |
| TGTAGGTTTCAGAAAATATA+AGG | 0.339371 | 1_3:-67949191 | Msa0136160:intron |
| AAATCTACCTTAGTTCCATT+TGG | 0.344620 | 1_3:+67948605 | None:intergenic |
| TTTATTCCATTGTAAGCAAT+TGG | 0.346999 | 1_3:+67948304 | None:intergenic |
| GGAACCCATTCATGTGATTT+GGG | 0.350013 | 1_3:-67949618 | Msa0136160:CDS |
| GACTTCATGGCTCAGTTCCT+TGG | 0.360528 | 1_3:-67949693 | Msa0136160:CDS |
| ATTCATCTTCCTAATTTAGT+TGG | 0.363312 | 1_3:+67948253 | None:intergenic |
| CCAATTGATTTCTGAAGAAT+GGG | 0.373736 | 1_3:-67949751 | Msa0136160:CDS |
| AATCTACCTTAGTTCCATTT+GGG | 0.385383 | 1_3:+67948606 | None:intergenic |
| GTTAGGAAATGTCCAAAATC+TGG | 0.392760 | 1_3:-67949165 | Msa0136160:CDS |
| GAAGAATGGGATTCTCTTAG+TGG | 0.394320 | 1_3:-67949738 | Msa0136160:CDS |
| TTGTTCCCAAATCACATGAA+TGG | 0.399061 | 1_3:+67949613 | None:intergenic |
| TCTTGTTGAAAACAATTTGC+GGG | 0.406671 | 1_3:-67949466 | Msa0136160:CDS |
| AGCCGAGGAAGCTGACTTCA+TGG | 0.435912 | 1_3:-67949706 | Msa0136160:CDS |
| TGTTCCCAAATCACATGAAT+GGG | 0.437898 | 1_3:+67949614 | None:intergenic |
| TGTTGGAGCCATGCCACGTT+AGG | 0.453646 | 1_3:+67949118 | None:intergenic |
| TTGCAAACTCTTGTCCCAAA+TGG | 0.455826 | 1_3:-67948620 | Msa0136160:CDS |
| ACTAAATTTGGCATCTTCCA+TGG | 0.457758 | 1_3:+67949563 | None:intergenic |
| TCTTGTCCCAAATGGAACTA+AGG | 0.473754 | 1_3:-67948612 | Msa0136160:intron |
| GAATGGGTTCCATTACTTGA+AGG | 0.488758 | 1_3:+67949630 | None:intergenic |
| TATGAATGCATTAATCATGA+AGG | 0.497393 | 1_3:-67949501 | Msa0136160:CDS |
| ATGCTTTGTGCATCAGTGGC+AGG | 0.503605 | 1_3:+67948973 | None:intergenic |
| GCTCAGTTCCTTGGTTGTAG+TGG | 0.503788 | 1_3:-67949684 | Msa0136160:CDS |
| TTCTTGTTGAAAACAATTTG+CGG | 0.503995 | 1_3:-67949467 | Msa0136160:CDS |
| TGCATTAATCATGAAGGGCC+GGG | 0.507871 | 1_3:-67949495 | Msa0136160:CDS |
| AACCTGTGGAAAACAGTTGT+TGG | 0.508340 | 1_3:+67949101 | None:intergenic |
| GAAGAGAAAGAATAAATGAA+AGG | 0.522466 | 1_3:-67948652 | Msa0136160:CDS |
| ATGCATTAATCATGAAGGGC+CGG | 0.525603 | 1_3:-67949496 | Msa0136160:CDS |
| CCATTCTTCAGAAATCAATT+GGG | 0.537373 | 1_3:+67949752 | None:intergenic |
| TTACTTGAAGGAAAATAAGA+TGG | 0.542752 | 1_3:+67949642 | None:intergenic |
| AGCCATGAAGTCAGCTTCCT+CGG | 0.543459 | 1_3:+67949704 | None:intergenic |
| AAGTTATGATCCAAATATTG+TGG | 0.544900 | 1_3:+67949540 | None:intergenic |
| ATGAATGCATTAATCATGAA+GGG | 0.569600 | 1_3:-67949500 | Msa0136160:CDS |
| TGAAGGAAAATAAGATGGCA+TGG | 0.574425 | 1_3:+67949647 | None:intergenic |
| AAACAATTTGCGGGATGAGA+GGG | 0.575684 | 1_3:-67949457 | Msa0136160:CDS |
| GAAGAGGGCCTAACGTGGCA+TGG | 0.579675 | 1_3:-67949126 | Msa0136160:CDS |
| AAAACAATTTGCGGGATGAG+AGG | 0.581008 | 1_3:-67949458 | Msa0136160:CDS |
| AGAAAATCGAAGGCAGGAAG+TGG | 0.581938 | 1_3:-67948997 | Msa0136160:CDS |
| ACGTTAGGCCCTCTTCATTG+TGG | 0.582294 | 1_3:+67949133 | None:intergenic |
| TTGCGTAGAAAATCGAAGGC+AGG | 0.583966 | 1_3:-67949003 | Msa0136160:CDS |
| TAGTGTTTCCACTACAACCA+AGG | 0.593389 | 1_3:+67949676 | None:intergenic |
| AATGATGATGACTTCAGAAG+AGG | 0.597972 | 1_3:-67949427 | Msa0136160:CDS |
| TCTATGAGCCACAATGAAGA+GGG | 0.604923 | 1_3:-67949141 | Msa0136160:CDS |
| TATGCTCCAATTGCTTACAA+TGG | 0.606083 | 1_3:-67948310 | Msa0136160:CDS |
| GGATATTAGTACCATGCTTG+AGG | 0.607564 | 1_3:-67948493 | Msa0136160:CDS |
| TTCTATGAGCCACAATGAAG+AGG | 0.608991 | 1_3:-67949142 | Msa0136160:CDS |
| TAGTTGGAGAAGAGAAGCTG+AGG | 0.609048 | 1_3:+67948269 | None:intergenic |
| TTGGACAGCTTCCTCAAGCA+TGG | 0.619471 | 1_3:+67948482 | None:intergenic |
| TAAGTTGCGTAGAAAATCGA+AGG | 0.620676 | 1_3:-67949007 | Msa0136160:CDS |
| AAGATTTAGAAGCTCACTAG+AGG | 0.625436 | 1_3:-67949373 | Msa0136160:intron |
| ATAAATGCTTTGTGCATCAG+TGG | 0.654510 | 1_3:+67948969 | None:intergenic |
| AAAGGATTAGAGTTAACCTG+TGG | 0.678724 | 1_3:+67949087 | None:intergenic |
| ACAATGAAGAGGGCCTAACG+TGG | 0.686185 | 1_3:-67949131 | Msa0136160:CDS |
| TAGTGGACAGTACACAGCCG+AGG | 0.694851 | 1_3:-67949721 | Msa0136160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCATTGTTTATTTATTTAT+TGG | - | chr1_3:67949646-67949665 | Msa0136160:CDS | 15.0% |
| !! | CTCATTGTTTATTTATTTAT+TGG | - | chr1_3:67949646-67949665 | Msa0136160:CDS | 15.0% |
| !!! | TAGAGGTATAATAATAGTTA+AGG | - | chr1_3:67948661-67948680 | Msa0136160:intron | 20.0% |
| !!! | TAATCATGATTTTACTATGT+AGG | - | chr1_3:67948809-67948828 | Msa0136160:intron | 20.0% |
| !!! | TAAGTGCATATTTAGAATTA+CGG | + | chr1_3:67949221-67949240 | None:intergenic | 20.0% |
| !! | ATTGAACTATTACTCAATAA+TGG | - | chr1_3:67949450-67949469 | Msa0136160:CDS | 20.0% |
| !! | TTGAACTATTACTCAATAAT+GGG | - | chr1_3:67949451-67949470 | Msa0136160:CDS | 20.0% |
| !!! | TTTTTTTGTTTGTGAATTGT+AGG | - | chr1_3:67949500-67949519 | Msa0136160:CDS | 20.0% |
| !! | GCATAAAAGAAATTGAAAAA+TGG | + | chr1_3:67949610-67949629 | None:intergenic | 20.0% |
| !!! | TAGAGGTATAATAATAGTTA+AGG | - | chr1_3:67948661-67948680 | Msa0136160:intron | 20.0% |
| !!! | TAATCATGATTTTACTATGT+AGG | - | chr1_3:67948809-67948828 | Msa0136160:intron | 20.0% |
| !!! | TAAGTGCATATTTAGAATTA+CGG | + | chr1_3:67949221-67949240 | None:intergenic | 20.0% |
| !! | ATTGAACTATTACTCAATAA+TGG | - | chr1_3:67949450-67949469 | Msa0136160:CDS | 20.0% |
| !! | TTGAACTATTACTCAATAAT+GGG | - | chr1_3:67949451-67949470 | Msa0136160:CDS | 20.0% |
| !!! | TTTTTTTGTTTGTGAATTGT+AGG | - | chr1_3:67949500-67949519 | Msa0136160:CDS | 20.0% |
| !! | GCATAAAAGAAATTGAAAAA+TGG | + | chr1_3:67949610-67949629 | None:intergenic | 20.0% |
| ! | TTACTTGAAGGAAAATAAGA+TGG | + | chr1_3:67948378-67948397 | None:intergenic | 25.0% |
| !!! | TCTTATTTTCCTTCAAGTAA+TGG | - | chr1_3:67948378-67948397 | Msa0136160:intron | 25.0% |
| !! | CAAATATTGTGGACTAAATT+TGG | + | chr1_3:67948469-67948488 | None:intergenic | 25.0% |
| ! | CAAATTTAGTCCACAATATT+TGG | - | chr1_3:67948467-67948486 | Msa0136160:CDS | 25.0% |
| ! | AAGTTATGATCCAAATATTG+TGG | + | chr1_3:67948480-67948499 | None:intergenic | 25.0% |
| !! | GCATTCATAGTTTATCTTTT+TGG | + | chr1_3:67948505-67948524 | None:intergenic | 25.0% |
| ! | TATGAATGCATTAATCATGA+AGG | - | chr1_3:67948516-67948535 | Msa0136160:intron | 25.0% |
| ! | ATGAATGCATTAATCATGAA+GGG | - | chr1_3:67948517-67948536 | Msa0136160:intron | 25.0% |
| ! | TTCTTGTTGAAAACAATTTG+CGG | - | chr1_3:67948550-67948569 | Msa0136160:intron | 25.0% |
| ! | TGTAGGTTTCAGAAAATATA+AGG | - | chr1_3:67948826-67948845 | Msa0136160:intron | 25.0% |
| ! | CAGAAAATATAAGGAATGTT+AGG | - | chr1_3:67948835-67948854 | Msa0136160:intron | 25.0% |
| ! | ACATTTCTTTAGTGCATATT+TGG | - | chr1_3:67949095-67949114 | Msa0136160:CDS | 25.0% |
| !! | ACAATATGTTACCATGATTT+TGG | - | chr1_3:67949141-67949160 | Msa0136160:CDS | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | - | chr1_3:67949365-67949384 | Msa0136160:intron | 25.0% |
| ! | TTTATTCCATTGTAAGCAAT+TGG | + | chr1_3:67949716-67949735 | None:intergenic | 25.0% |
| ! | GCTTACAATGGAATAAATAT+TGG | - | chr1_3:67949719-67949738 | Msa0136160:CDS | 25.0% |
| ! | TTACTTGAAGGAAAATAAGA+TGG | + | chr1_3:67948378-67948397 | None:intergenic | 25.0% |
| !!! | TCTTATTTTCCTTCAAGTAA+TGG | - | chr1_3:67948378-67948397 | Msa0136160:intron | 25.0% |
| !! | CAAATATTGTGGACTAAATT+TGG | + | chr1_3:67948469-67948488 | None:intergenic | 25.0% |
| ! | CAAATTTAGTCCACAATATT+TGG | - | chr1_3:67948467-67948486 | Msa0136160:CDS | 25.0% |
| ! | AAGTTATGATCCAAATATTG+TGG | + | chr1_3:67948480-67948499 | None:intergenic | 25.0% |
| !! | GCATTCATAGTTTATCTTTT+TGG | + | chr1_3:67948505-67948524 | None:intergenic | 25.0% |
| ! | TATGAATGCATTAATCATGA+AGG | - | chr1_3:67948516-67948535 | Msa0136160:intron | 25.0% |
| ! | ATGAATGCATTAATCATGAA+GGG | - | chr1_3:67948517-67948536 | Msa0136160:intron | 25.0% |
| ! | TTCTTGTTGAAAACAATTTG+CGG | - | chr1_3:67948550-67948569 | Msa0136160:intron | 25.0% |
| ! | TGTAGGTTTCAGAAAATATA+AGG | - | chr1_3:67948826-67948845 | Msa0136160:intron | 25.0% |
| ! | CAGAAAATATAAGGAATGTT+AGG | - | chr1_3:67948835-67948854 | Msa0136160:intron | 25.0% |
| ! | ACATTTCTTTAGTGCATATT+TGG | - | chr1_3:67949095-67949114 | Msa0136160:CDS | 25.0% |
| !! | ACAATATGTTACCATGATTT+TGG | - | chr1_3:67949141-67949160 | Msa0136160:CDS | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | - | chr1_3:67949365-67949384 | Msa0136160:intron | 25.0% |
| ! | TTTATTCCATTGTAAGCAAT+TGG | + | chr1_3:67949716-67949735 | None:intergenic | 25.0% |
| ! | GCTTACAATGGAATAAATAT+TGG | - | chr1_3:67949719-67949738 | Msa0136160:CDS | 25.0% |
| CCATTCTTCAGAAATCAATT+GGG | + | chr1_3:67948268-67948287 | None:intergenic | 30.0% | |
| ! | CCAATTGATTTCTGAAGAAT+GGG | - | chr1_3:67948266-67948285 | Msa0136160:CDS | 30.0% |
| ATCTTCCATGGAAAAAAACA+TGG | + | chr1_3:67948445-67948464 | None:intergenic | 30.0% | |
| ! | TTTTCAACAAGAACTAAACC+CGG | + | chr1_3:67948543-67948562 | None:intergenic | 30.0% |
| TCTTGTTGAAAACAATTTGC+GGG | - | chr1_3:67948551-67948570 | Msa0136160:intron | 30.0% | |
| AGAGGATAAAAGCAAAAACT+TGG | - | chr1_3:67948608-67948627 | Msa0136160:intron | 30.0% | |
| GAGGATAAAAGCAAAAACTT+GGG | - | chr1_3:67948609-67948628 | Msa0136160:intron | 30.0% | |
| ! | AGCTTCTAAATCTTTTTGCA+GGG | + | chr1_3:67948638-67948657 | None:intergenic | 30.0% |
| CTAAAGAAATGTCCTTCAAA+GGG | + | chr1_3:67949087-67949106 | None:intergenic | 30.0% | |
| ACTAAAGAAATGTCCTTCAA+AGG | + | chr1_3:67949088-67949107 | None:intergenic | 30.0% | |
| ! | CGTAACTTTTACCAAAATCA+TGG | + | chr1_3:67949155-67949174 | None:intergenic | 30.0% |
| ACAGTAGTCAGTAGTTTAAT+TGG | + | chr1_3:67949272-67949291 | None:intergenic | 30.0% | |
| ! | TAAACTACTGACTACTGTAT+TGG | - | chr1_3:67949274-67949293 | Msa0136160:intron | 30.0% |
| AGTTAAACGTCTCTCATTAT+AGG | - | chr1_3:67949315-67949334 | Msa0136160:intron | 30.0% | |
| AATCTACCTTAGTTCCATTT+GGG | + | chr1_3:67949414-67949433 | None:intergenic | 30.0% | |
| AAATCTACCTTAGTTCCATT+TGG | + | chr1_3:67949415-67949434 | None:intergenic | 30.0% | |
| GAACTAAGGTAGATTTCTTA+AGG | - | chr1_3:67949419-67949438 | Msa0136160:CDS | 30.0% | |
| !! | TACTCAATAATGGGTTAAGA+TGG | - | chr1_3:67949460-67949479 | Msa0136160:CDS | 30.0% |
| !! | TTTTGTTTGTGAATTGTAGG+TGG | - | chr1_3:67949503-67949522 | Msa0136160:CDS | 30.0% |
| ! | GTTTTTGCAGCTTCAAATTA+AGG | - | chr1_3:67949566-67949585 | Msa0136160:CDS | 30.0% |
| TTCTCTTCTCCAACTAAATT+AGG | - | chr1_3:67949755-67949774 | Msa0136160:CDS | 30.0% | |
| CCATTCTTCAGAAATCAATT+GGG | + | chr1_3:67948268-67948287 | None:intergenic | 30.0% | |
| ! | CCAATTGATTTCTGAAGAAT+GGG | - | chr1_3:67948266-67948285 | Msa0136160:CDS | 30.0% |
| ATCTTCCATGGAAAAAAACA+TGG | + | chr1_3:67948445-67948464 | None:intergenic | 30.0% | |
| ! | TTTTCAACAAGAACTAAACC+CGG | + | chr1_3:67948543-67948562 | None:intergenic | 30.0% |
| TCTTGTTGAAAACAATTTGC+GGG | - | chr1_3:67948551-67948570 | Msa0136160:intron | 30.0% | |
| AGAGGATAAAAGCAAAAACT+TGG | - | chr1_3:67948608-67948627 | Msa0136160:intron | 30.0% | |
| GAGGATAAAAGCAAAAACTT+GGG | - | chr1_3:67948609-67948628 | Msa0136160:intron | 30.0% | |
| ! | AGCTTCTAAATCTTTTTGCA+GGG | + | chr1_3:67948638-67948657 | None:intergenic | 30.0% |
| CTAAAGAAATGTCCTTCAAA+GGG | + | chr1_3:67949087-67949106 | None:intergenic | 30.0% | |
| ACTAAAGAAATGTCCTTCAA+AGG | + | chr1_3:67949088-67949107 | None:intergenic | 30.0% | |
| ! | CGTAACTTTTACCAAAATCA+TGG | + | chr1_3:67949155-67949174 | None:intergenic | 30.0% |
| ACAGTAGTCAGTAGTTTAAT+TGG | + | chr1_3:67949272-67949291 | None:intergenic | 30.0% | |
| ! | TAAACTACTGACTACTGTAT+TGG | - | chr1_3:67949274-67949293 | Msa0136160:intron | 30.0% |
| AGTTAAACGTCTCTCATTAT+AGG | - | chr1_3:67949315-67949334 | Msa0136160:intron | 30.0% | |
| AATCTACCTTAGTTCCATTT+GGG | + | chr1_3:67949414-67949433 | None:intergenic | 30.0% | |
| AAATCTACCTTAGTTCCATT+TGG | + | chr1_3:67949415-67949434 | None:intergenic | 30.0% | |
| GAACTAAGGTAGATTTCTTA+AGG | - | chr1_3:67949419-67949438 | Msa0136160:CDS | 30.0% | |
| !! | TACTCAATAATGGGTTAAGA+TGG | - | chr1_3:67949460-67949479 | Msa0136160:CDS | 30.0% |
| !! | TTTTGTTTGTGAATTGTAGG+TGG | - | chr1_3:67949503-67949522 | Msa0136160:CDS | 30.0% |
| ! | GTTTTTGCAGCTTCAAATTA+AGG | - | chr1_3:67949566-67949585 | Msa0136160:CDS | 30.0% |
| TTCTCTTCTCCAACTAAATT+AGG | - | chr1_3:67949755-67949774 | Msa0136160:CDS | 30.0% | |
| ! | CCCAATTGATTTCTGAAGAA+TGG | - | chr1_3:67948265-67948284 | Msa0136160:CDS | 35.0% |
| CCCATTCTTCAGAAATCAAT+TGG | + | chr1_3:67948269-67948288 | None:intergenic | 35.0% | |
| TGAAGGAAAATAAGATGGCA+TGG | + | chr1_3:67948373-67948392 | None:intergenic | 35.0% | |
| TGTTCCCAAATCACATGAAT+GGG | + | chr1_3:67948406-67948425 | None:intergenic | 35.0% | |
| TTGTTCCCAAATCACATGAA+TGG | + | chr1_3:67948407-67948426 | None:intergenic | 35.0% | |
| CATGGAAAAAAACATGGACA+AGG | + | chr1_3:67948439-67948458 | None:intergenic | 35.0% | |
| !!! | CTTGTCCATGTTTTTTTCCA+TGG | - | chr1_3:67948437-67948456 | Msa0136160:intron | 35.0% |
| ACTAAATTTGGCATCTTCCA+TGG | + | chr1_3:67948457-67948476 | None:intergenic | 35.0% | |
| ! | AATGATGATGACTTCAGAAG+AGG | - | chr1_3:67948590-67948609 | Msa0136160:intron | 35.0% |
| ! | GAGCTTCTAAATCTTTTTGC+AGG | + | chr1_3:67948639-67948658 | None:intergenic | 35.0% |
| AAGATTTAGAAGCTCACTAG+AGG | - | chr1_3:67948644-67948663 | Msa0136160:CDS | 35.0% | |
| GTTAGGAAATGTCCAAAATC+TGG | - | chr1_3:67948852-67948871 | Msa0136160:intron | 35.0% | |
| AAAGGATTAGAGTTAACCTG+TGG | + | chr1_3:67948933-67948952 | None:intergenic | 35.0% | |
| ! | GGTTAACTCTAATCCTTTTC+TGG | - | chr1_3:67948935-67948954 | Msa0136160:intron | 35.0% |
| !!! | AATCCTTTTCTGGAGCAAAA+TGG | - | chr1_3:67948945-67948964 | Msa0136160:intron | 35.0% |
| ! | TCTTTTAGGCCTAGAATTGA+AGG | + | chr1_3:67948978-67948997 | None:intergenic | 35.0% |
| ! | TTCGATTTTCTACGCAACTT+AGG | + | chr1_3:67949011-67949030 | None:intergenic | 35.0% |
| TAAGTTGCGTAGAAAATCGA+AGG | - | chr1_3:67949010-67949029 | Msa0136160:CDS | 35.0% | |
| ATAAATGCTTTGTGCATCAG+TGG | + | chr1_3:67949051-67949070 | None:intergenic | 35.0% | |
| GTGAATTTGATGAATCACGA+TGG | + | chr1_3:67949199-67949218 | None:intergenic | 35.0% | |
| GCTGCAAAAACTTCACATAT+TGG | + | chr1_3:67949557-67949576 | None:intergenic | 35.0% | |
| !!! | TTTTGAGCTCTGAAGATATG+TGG | - | chr1_3:67949681-67949700 | Msa0136160:CDS | 35.0% |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1_3:67949707-67949726 | Msa0136160:CDS | 35.0% | |
| ! | CCCAATTGATTTCTGAAGAA+TGG | - | chr1_3:67948265-67948284 | Msa0136160:CDS | 35.0% |
| CCCATTCTTCAGAAATCAAT+TGG | + | chr1_3:67948269-67948288 | None:intergenic | 35.0% | |
| TGAAGGAAAATAAGATGGCA+TGG | + | chr1_3:67948373-67948392 | None:intergenic | 35.0% | |
| TGTTCCCAAATCACATGAAT+GGG | + | chr1_3:67948406-67948425 | None:intergenic | 35.0% | |
| TTGTTCCCAAATCACATGAA+TGG | + | chr1_3:67948407-67948426 | None:intergenic | 35.0% | |
| CATGGAAAAAAACATGGACA+AGG | + | chr1_3:67948439-67948458 | None:intergenic | 35.0% | |
| !!! | CTTGTCCATGTTTTTTTCCA+TGG | - | chr1_3:67948437-67948456 | Msa0136160:intron | 35.0% |
| ACTAAATTTGGCATCTTCCA+TGG | + | chr1_3:67948457-67948476 | None:intergenic | 35.0% | |
| ! | AATGATGATGACTTCAGAAG+AGG | - | chr1_3:67948590-67948609 | Msa0136160:intron | 35.0% |
| ! | GAGCTTCTAAATCTTTTTGC+AGG | + | chr1_3:67948639-67948658 | None:intergenic | 35.0% |
| AAGATTTAGAAGCTCACTAG+AGG | - | chr1_3:67948644-67948663 | Msa0136160:CDS | 35.0% | |
| GTTAGGAAATGTCCAAAATC+TGG | - | chr1_3:67948852-67948871 | Msa0136160:intron | 35.0% | |
| AAAGGATTAGAGTTAACCTG+TGG | + | chr1_3:67948933-67948952 | None:intergenic | 35.0% | |
| ! | GGTTAACTCTAATCCTTTTC+TGG | - | chr1_3:67948935-67948954 | Msa0136160:intron | 35.0% |
| !!! | AATCCTTTTCTGGAGCAAAA+TGG | - | chr1_3:67948945-67948964 | Msa0136160:intron | 35.0% |
| ! | TCTTTTAGGCCTAGAATTGA+AGG | + | chr1_3:67948978-67948997 | None:intergenic | 35.0% |
| ! | TTCGATTTTCTACGCAACTT+AGG | + | chr1_3:67949011-67949030 | None:intergenic | 35.0% |
| TAAGTTGCGTAGAAAATCGA+AGG | - | chr1_3:67949010-67949029 | Msa0136160:CDS | 35.0% | |
| ATAAATGCTTTGTGCATCAG+TGG | + | chr1_3:67949051-67949070 | None:intergenic | 35.0% | |
| GTGAATTTGATGAATCACGA+TGG | + | chr1_3:67949199-67949218 | None:intergenic | 35.0% | |
| GCTGCAAAAACTTCACATAT+TGG | + | chr1_3:67949557-67949576 | None:intergenic | 35.0% | |
| !!! | TTTTGAGCTCTGAAGATATG+TGG | - | chr1_3:67949681-67949700 | Msa0136160:CDS | 35.0% |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1_3:67949707-67949726 | Msa0136160:CDS | 35.0% | |
| GAAGAATGGGATTCTCTTAG+TGG | - | chr1_3:67948279-67948298 | Msa0136160:CDS | 40.0% | |
| TAGTGTTTCCACTACAACCA+AGG | + | chr1_3:67948344-67948363 | None:intergenic | 40.0% | |
| ! | GAATGGGTTCCATTACTTGA+AGG | + | chr1_3:67948390-67948409 | None:intergenic | 40.0% |
| TGGAACCCATTCATGTGATT+TGG | - | chr1_3:67948398-67948417 | Msa0136160:intron | 40.0% | |
| GGAACCCATTCATGTGATTT+GGG | - | chr1_3:67948399-67948418 | Msa0136160:intron | 40.0% | |
| ATGCATTAATCATGAAGGGC+CGG | - | chr1_3:67948521-67948540 | Msa0136160:intron | 40.0% | |
| AAAACAATTTGCGGGATGAG+AGG | - | chr1_3:67948559-67948578 | Msa0136160:intron | 40.0% | |
| AAACAATTTGCGGGATGAGA+GGG | - | chr1_3:67948560-67948579 | Msa0136160:intron | 40.0% | |
| ! | TGGCTCATAGAACCAGATTT+TGG | + | chr1_3:67948867-67948886 | None:intergenic | 40.0% |
| TTCTATGAGCCACAATGAAG+AGG | - | chr1_3:67948875-67948894 | Msa0136160:intron | 40.0% | |
| TCTATGAGCCACAATGAAGA+GGG | - | chr1_3:67948876-67948895 | Msa0136160:intron | 40.0% | |
| AACCTGTGGAAAACAGTTGT+TGG | + | chr1_3:67948919-67948938 | None:intergenic | 40.0% | |
| GGAGGAAAACCTTCAATTCT+AGG | - | chr1_3:67948966-67948985 | Msa0136160:CDS | 40.0% | |
| !! | TAGGTGCTTCAGGTTCTTTT+AGG | + | chr1_3:67948992-67949011 | None:intergenic | 40.0% |
| CAAGAGTAAGTTCCCTTTGA+AGG | - | chr1_3:67949072-67949091 | Msa0136160:CDS | 40.0% | |
| ! | TTTCCTCATGTTTTGTGCAG+AGG | - | chr1_3:67949341-67949360 | Msa0136160:intron | 40.0% |
| TTGCAAACTCTTGTCCCAAA+TGG | - | chr1_3:67949397-67949416 | Msa0136160:CDS | 40.0% | |
| TCTTGTCCCAAATGGAACTA+AGG | - | chr1_3:67949405-67949424 | Msa0136160:CDS | 40.0% | |
| GGATATTAGTACCATGCTTG+AGG | - | chr1_3:67949524-67949543 | Msa0136160:CDS | 40.0% | |
| GAAGAATGGGATTCTCTTAG+TGG | - | chr1_3:67948279-67948298 | Msa0136160:CDS | 40.0% | |
| TAGTGTTTCCACTACAACCA+AGG | + | chr1_3:67948344-67948363 | None:intergenic | 40.0% | |
| ! | GAATGGGTTCCATTACTTGA+AGG | + | chr1_3:67948390-67948409 | None:intergenic | 40.0% |
| TGGAACCCATTCATGTGATT+TGG | - | chr1_3:67948398-67948417 | Msa0136160:intron | 40.0% | |
| GGAACCCATTCATGTGATTT+GGG | - | chr1_3:67948399-67948418 | Msa0136160:intron | 40.0% | |
| ATGCATTAATCATGAAGGGC+CGG | - | chr1_3:67948521-67948540 | Msa0136160:intron | 40.0% | |
| AAAACAATTTGCGGGATGAG+AGG | - | chr1_3:67948559-67948578 | Msa0136160:intron | 40.0% | |
| AAACAATTTGCGGGATGAGA+GGG | - | chr1_3:67948560-67948579 | Msa0136160:intron | 40.0% | |
| ! | TGGCTCATAGAACCAGATTT+TGG | + | chr1_3:67948867-67948886 | None:intergenic | 40.0% |
| TTCTATGAGCCACAATGAAG+AGG | - | chr1_3:67948875-67948894 | Msa0136160:intron | 40.0% | |
| TCTATGAGCCACAATGAAGA+GGG | - | chr1_3:67948876-67948895 | Msa0136160:intron | 40.0% | |
| AACCTGTGGAAAACAGTTGT+TGG | + | chr1_3:67948919-67948938 | None:intergenic | 40.0% | |
| GGAGGAAAACCTTCAATTCT+AGG | - | chr1_3:67948966-67948985 | Msa0136160:CDS | 40.0% | |
| !! | TAGGTGCTTCAGGTTCTTTT+AGG | + | chr1_3:67948992-67949011 | None:intergenic | 40.0% |
| CAAGAGTAAGTTCCCTTTGA+AGG | - | chr1_3:67949072-67949091 | Msa0136160:CDS | 40.0% | |
| ! | TTTCCTCATGTTTTGTGCAG+AGG | - | chr1_3:67949341-67949360 | Msa0136160:intron | 40.0% |
| TTGCAAACTCTTGTCCCAAA+TGG | - | chr1_3:67949397-67949416 | Msa0136160:CDS | 40.0% | |
| TCTTGTCCCAAATGGAACTA+AGG | - | chr1_3:67949405-67949424 | Msa0136160:CDS | 40.0% | |
| GGATATTAGTACCATGCTTG+AGG | - | chr1_3:67949524-67949543 | Msa0136160:CDS | 40.0% | |
| TGCATTAATCATGAAGGGCC+GGG | - | chr1_3:67948522-67948541 | Msa0136160:intron | 45.0% | |
| ! | CTCCAACAACTGTTTTCCAC+AGG | - | chr1_3:67948914-67948933 | Msa0136160:intron | 45.0% |
| ! | CCTCCATTTTGCTCCAGAAA+AGG | + | chr1_3:67948951-67948970 | None:intergenic | 45.0% |
| !!! | CCTTTTCTGGAGCAAAATGG+AGG | - | chr1_3:67948948-67948967 | Msa0136160:intron | 45.0% |
| TTGCGTAGAAAATCGAAGGC+AGG | - | chr1_3:67949014-67949033 | Msa0136160:CDS | 45.0% | |
| AGAAAATCGAAGGCAGGAAG+TGG | - | chr1_3:67949020-67949039 | Msa0136160:CDS | 45.0% | |
| TCTCCTCTGCACAAAACATG+AGG | + | chr1_3:67949347-67949366 | None:intergenic | 45.0% | |
| TAGTTGGAGAAGAGAAGCTG+AGG | + | chr1_3:67949751-67949770 | None:intergenic | 45.0% | |
| TGCATTAATCATGAAGGGCC+GGG | - | chr1_3:67948522-67948541 | Msa0136160:intron | 45.0% | |
| ! | CTCCAACAACTGTTTTCCAC+AGG | - | chr1_3:67948914-67948933 | Msa0136160:intron | 45.0% |
| ! | CCTCCATTTTGCTCCAGAAA+AGG | + | chr1_3:67948951-67948970 | None:intergenic | 45.0% |
| !!! | CCTTTTCTGGAGCAAAATGG+AGG | - | chr1_3:67948948-67948967 | Msa0136160:intron | 45.0% |
| TTGCGTAGAAAATCGAAGGC+AGG | - | chr1_3:67949014-67949033 | Msa0136160:CDS | 45.0% | |
| AGAAAATCGAAGGCAGGAAG+TGG | - | chr1_3:67949020-67949039 | Msa0136160:CDS | 45.0% | |
| TCTCCTCTGCACAAAACATG+AGG | + | chr1_3:67949347-67949366 | None:intergenic | 45.0% | |
| TAGTTGGAGAAGAGAAGCTG+AGG | + | chr1_3:67949751-67949770 | None:intergenic | 45.0% | |
| AGCCATGAAGTCAGCTTCCT+CGG | + | chr1_3:67948316-67948335 | None:intergenic | 50.0% | |
| GACTTCATGGCTCAGTTCCT+TGG | - | chr1_3:67948324-67948343 | Msa0136160:CDS | 50.0% | |
| GCTCAGTTCCTTGGTTGTAG+TGG | - | chr1_3:67948333-67948352 | Msa0136160:CDS | 50.0% | |
| ACGTTAGGCCCTCTTCATTG+TGG | + | chr1_3:67948887-67948906 | None:intergenic | 50.0% | |
| ACAATGAAGAGGGCCTAACG+TGG | - | chr1_3:67948886-67948905 | Msa0136160:intron | 50.0% | |
| CTACGCAACTTAGGTGCTTC+AGG | + | chr1_3:67949002-67949021 | None:intergenic | 50.0% | |
| ATGCTTTGTGCATCAGTGGC+AGG | + | chr1_3:67949047-67949066 | None:intergenic | 50.0% | |
| TTGGACAGCTTCCTCAAGCA+TGG | + | chr1_3:67949538-67949557 | None:intergenic | 50.0% | |
| AGCCATGAAGTCAGCTTCCT+CGG | + | chr1_3:67948316-67948335 | None:intergenic | 50.0% | |
| GACTTCATGGCTCAGTTCCT+TGG | - | chr1_3:67948324-67948343 | Msa0136160:CDS | 50.0% | |
| GCTCAGTTCCTTGGTTGTAG+TGG | - | chr1_3:67948333-67948352 | Msa0136160:CDS | 50.0% | |
| ACGTTAGGCCCTCTTCATTG+TGG | + | chr1_3:67948887-67948906 | None:intergenic | 50.0% | |
| ACAATGAAGAGGGCCTAACG+TGG | - | chr1_3:67948886-67948905 | Msa0136160:intron | 50.0% | |
| CTACGCAACTTAGGTGCTTC+AGG | + | chr1_3:67949002-67949021 | None:intergenic | 50.0% | |
| ATGCTTTGTGCATCAGTGGC+AGG | + | chr1_3:67949047-67949066 | None:intergenic | 50.0% | |
| TTGGACAGCTTCCTCAAGCA+TGG | + | chr1_3:67949538-67949557 | None:intergenic | 50.0% | |
| ! | TAGTGGACAGTACACAGCCG+AGG | - | chr1_3:67948296-67948315 | Msa0136160:CDS | 55.0% |
| ! | AGCCGAGGAAGCTGACTTCA+TGG | - | chr1_3:67948311-67948330 | Msa0136160:CDS | 55.0% |
| TGTTGGAGCCATGCCACGTT+AGG | + | chr1_3:67948902-67948921 | None:intergenic | 55.0% | |
| ! | TAGTGGACAGTACACAGCCG+AGG | - | chr1_3:67948296-67948315 | Msa0136160:CDS | 55.0% |
| ! | AGCCGAGGAAGCTGACTTCA+TGG | - | chr1_3:67948311-67948330 | Msa0136160:CDS | 55.0% |
| TGTTGGAGCCATGCCACGTT+AGG | + | chr1_3:67948902-67948921 | None:intergenic | 55.0% | |
| GAAGAGGGCCTAACGTGGCA+TGG | - | chr1_3:67948891-67948910 | Msa0136160:intron | 60.0% | |
| GAAGAGGGCCTAACGTGGCA+TGG | - | chr1_3:67948891-67948910 | Msa0136160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 67948255 | 67949784 | 67948255 | ID=Msa0136160;Name=Msa0136160 |
| chr1_3 | mRNA | 67948255 | 67949784 | 67948255 | ID=Msa0136160-mRNA-1;Parent=Msa0136160;Name=Msa0136160-mRNA-1;_AED=0.43;_eAED=0.44;_QI=0|0|0|1|1|1|5|0|297 |
| chr1_3 | exon | 67949374 | 67949784 | 67949374 | ID=Msa0136160-mRNA-1:exon:23453;Parent=Msa0136160-mRNA-1 |
| chr1_3 | exon | 67948963 | 67949208 | 67948963 | ID=Msa0136160-mRNA-1:exon:23452;Parent=Msa0136160-mRNA-1 |
| chr1_3 | exon | 67948613 | 67948678 | 67948613 | ID=Msa0136160-mRNA-1:exon:23451;Parent=Msa0136160-mRNA-1 |
| chr1_3 | exon | 67948452 | 67948517 | 67948452 | ID=Msa0136160-mRNA-1:exon:23450;Parent=Msa0136160-mRNA-1 |
| chr1_3 | exon | 67948255 | 67948359 | 67948255 | ID=Msa0136160-mRNA-1:exon:23449;Parent=Msa0136160-mRNA-1 |
| chr1_3 | CDS | 67949374 | 67949784 | 67949374 | ID=Msa0136160-mRNA-1:cds;Parent=Msa0136160-mRNA-1 |
| chr1_3 | CDS | 67948963 | 67949208 | 67948963 | ID=Msa0136160-mRNA-1:cds;Parent=Msa0136160-mRNA-1 |
| chr1_3 | CDS | 67948613 | 67948678 | 67948613 | ID=Msa0136160-mRNA-1:cds;Parent=Msa0136160-mRNA-1 |
| chr1_3 | CDS | 67948452 | 67948517 | 67948452 | ID=Msa0136160-mRNA-1:cds;Parent=Msa0136160-mRNA-1 |
| chr1_3 | CDS | 67948255 | 67948359 | 67948255 | ID=Msa0136160-mRNA-1:cds;Parent=Msa0136160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
