AlfalfaGEDB | Msa0137320

M. sativa cultivar zhongmu-4 / Msa0137320

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137320	XP_024627439.1	62.524	531	133	8	1	467	1	529	0.0	592

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137320	sp\|Q9C6K9\|LRL11_ARATH	38.415	492	208	18	35	467	28	483	4.19e-75	250

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137320	G7IC81	62.524	531	133	8	1	467	1	529	0.0	592

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137320	MtrunA17_Chr1g0209431	62.524	531	133	8	1	467	1	529	0.0	592
Msa0137320	MtrunA17_Chr1g0209391	54.941	506	162	12	9	467	5	491	1.13e-172	499
Msa0137320	MtrunA17_Chr1g0209411	61.516	343	98	8	1	339	1	313	1.48e-123	366
Msa0137320	MtrunA17_Chr1g0209381	39.489	509	228	15	26	467	24	519	1.07e-106	331
Msa0137320	MtrunA17_Chr5g0423061	37.091	550	210	19	3	467	6	504	7.12e-85	273
Msa0137320	MtrunA17_Chr7g0251121	57.456	228	52	4	285	467	331	558	1.79e-71	239
Msa0137320	MtrunA17_Chr8g0376061	56.109	221	53	3	291	467	307	527	1.29e-68	231
Msa0137320	MtrunA17_Chr6g0483931	46.735	291	81	6	248	467	273	560	2.80e-68	231
Msa0137320	MtrunA17_Chr1g0209361	56.621	219	51	3	293	467	316	534	1.05e-67	229
Msa0137320	MtrunA17_Chr6g0467631	47.348	264	84	6	259	467	278	541	9.23e-62	213

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137320	AT1G25390.1	38.415	492	208	18	35	467	28	483	4.25e-76	250
Msa0137320	AT1G25390.2	38.415	492	208	18	35	467	28	483	4.25e-76	250
Msa0137320	AT5G38210.3	33.272	547	228	19	33	466	20	542	9.35e-68	229
Msa0137320	AT5G38210.2	33.272	547	228	19	33	466	38	560	1.44e-67	229
Msa0137320	AT5G38210.1	42.378	328	96	9	230	466	223	548	2.06e-64	220
Msa0137320	AT1G18390.1	51.339	224	65	3	288	467	306	529	2.10e-63	217
Msa0137320	AT1G18390.2	51.339	224	65	3	288	467	312	535	3.48e-63	216
Msa0137320	AT1G66880.3	54.338	219	52	5	292	466	322	536	5.44e-61	211
Msa0137320	AT1G66880.2	54.091	220	53	5	292	467	564	779	1.14e-59	211
Msa0137320	AT1G66880.1	54.091	220	53	5	292	467	943	1158	4.92e-59	210

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 82 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGTCCAGTTTACCAA+AGG	0.674450	1_3:+69733763	Msa0137320:CDS
AAAGTTCCAAAAGGAGAGGA+AGG	0.521362	1_3:-69733925	None:intergenic
AAGAGTGACAGTGTCTACGA+TGG	0.662798	1_3:+69738095	Msa0137320:CDS
AAGAGTGATGTTTACAGCTT+TGG	0.331297	1_3:+69738708	Msa0137320:CDS
AATGGAAATTGTGTTGCCAC+TGG	0.596979	1_3:-69733827	None:intergenic
ACAAACAGGACGTGAAAGAG+TGG	0.621459	1_3:-69734098	None:intergenic
ACACTTGAACTCCGAAAGTG+TGG	0.641426	1_3:+69733694	Msa0137320:CDS
ACACTTTCGGAGTTCAAGTG+TGG	0.658405	1_3:-69733692	None:intergenic
ACAGCTCCACAAGGAACCCC+CGG	0.584276	1_3:+69738642	Msa0137320:CDS
ACAGGACGTGAAAGAGTGGT+TGG	0.562802	1_3:-69734094	None:intergenic

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTACTTGTCTTAACTAGTAA+AGG	+	chr1_3:69733598-69733617	Msa0137320:CDS	30.0%
GTCTTAACTAGTAAAGGAAA+TGG	+	chr1_3:69733604-69733623	Msa0137320:CDS	30.0%
TTTCCACAATCAAATGATTC+TGG	-	chr1_3:69733646-69733665	None:intergenic	30.0%
TCATTTGATTGTGGAAATCT+TGG	+	chr1_3:69733649-69733668	Msa0137320:CDS	30.0%
CATTTGATTGTGGAAATCTT+GGG	+	chr1_3:69733650-69733669	Msa0137320:CDS	30.0%
TGTAATATTAACATGGCTGA+AGG	-	chr1_3:69733899-69733918	None:intergenic	30.0%
ATAAAAAGTTCCAAAAGGAG+AGG	-	chr1_3:69733932-69733951	None:intergenic	30.0%
CATCTTCCTGTCATTAAATT+AGG	+	chr1_3:69734126-69734145	Msa0137320:CDS	30.0%
GCAAAACCTAATTTAATGAC+AGG	-	chr1_3:69734135-69734154	None:intergenic	30.0%
ATTTGAAGATTGGAACTGAA+AGG	-	chr1_3:69734199-69734218	None:intergenic	30.0%

Showing 1 to 10 of 364 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	69733491	69738749	69733491	ID=Msa0137320;Name=Msa0137320
chr1_3	mRNA	69733491	69738749	69733491	ID=Msa0137320-mRNA-1;Parent=Msa0137320;Name=Msa0137320-mRNA-1;_AED=0.43;_eAED=0.43;_QI=53\|0.33\|0.5\|1\|1\|1\|4\|0\|468
chr1_3	exon	69733491	69734298	69733491	ID=Msa0137320-mRNA-1:exon:24150;Parent=Msa0137320-mRNA-1
chr1_3	exon	69734391	69734431	69734391	ID=Msa0137320-mRNA-1:exon:24151;Parent=Msa0137320-mRNA-1
chr1_3	exon	69738003	69738215	69738003	ID=Msa0137320-mRNA-1:exon:24152;Parent=Msa0137320-mRNA-1
chr1_3	exon	69738352	69738749	69738352	ID=Msa0137320-mRNA-1:exon:24153;Parent=Msa0137320-mRNA-1
chr1_3	five_prime_UTR	69733491	69733543	69733491	ID=Msa0137320-mRNA-1:five_prime_utr;Parent=Msa0137320-mRNA-1
chr1_3	CDS	69733544	69734298	69733544	ID=Msa0137320-mRNA-1:cds;Parent=Msa0137320-mRNA-1
chr1_3	CDS	69734391	69734431	69734391	ID=Msa0137320-mRNA-1:cds;Parent=Msa0137320-mRNA-1
chr1_3	CDS	69738003	69738215	69738003	ID=Msa0137320-mRNA-1:cds;Parent=Msa0137320-mRNA-1
chr1_3	CDS	69738352	69738749	69738352	ID=Msa0137320-mRNA-1:cds;Parent=Msa0137320-mRNA-1

Gene Sequence

>Msa0137320

ATGGTTCTAGTTTATGTAGTACGTCTTTTGTTCTCTCATTTGACAGTGCTACTGCTACTTGTCTTAACTAGTAAAGGAAATGGACACAGTGATGATTGTCCAGAATCATTTGATTGTGGAAATCTTGGGTTGATTAGATACCCTTTTACCACACTTGAACTCCGAAAGTGTGGTGCATTGGCAATTCAAGGTTGTGATGATCTCAACCAAACTGCTATGAAACACGTCCAGTTTACCAAAGGAGGAAAACTCTTTCAAGTTACAAACATTAATAATCACTGGTCCAGTGGCAACACAATTTCCATTATTGACCCGAATATCACCAAGCTTTTGGAGAAAAATGCGTGTGAGGCCTTCAGCCATGTTAATATTACACTCCCTCCTTCCTCTCCTTTTGGAACTTTTTATATGAAAGAAGGCATAACAGCTTTCAAATGCAACCGTACCCAAAAGTTAGTCATCAACCACCCTCCAAATAACTTCTTCAAAAACAATTCTTGTCCTCACTACGATTTTTACTTTGGTGATTCAACAATATCTGATGATGAGTCCAACCACTCTTTCACGTCCTGTTTGTCGTTTCATCTTCCTGTCATTAAATTAGGTTTTGCACTTTCTGGTAACCCATTTCCATATTTAACAGATGAAATTACCTTTCAGTTCCAATCTTCAAATTTCTGTCAACAGTGTAGTTATCATGAAAAAAACATTCATTGTCGTGTTGACAGAAAGGGACAAATTTATTGTACCGAAAGGAAGGGTAGAAGTTCAACTTGGAAGCTAGGATTGGTTTTAGGCATTGGACTCCTTGTCATTATTATAACTGGGTTGCTGTTTATATGGCGCTGCAAACAACGCGTTCCTGATTTCTACTCAAACAAATACACAAAGAGTGACAGTGTCTACGATGGGGTGCCGGTCTTTTCCTTTAAGGATCTTGAAGTAGCAACAAAAAAAATTGACAGTTCAAGAGAACTTGGAGAAGGAGGATTTGGCACTGTTTATTATGTGTCTCTCTACGGCTGCACTTCACATCATAGTCATGAACTATTGCTTGTATATGAATACATTTCAAATGGAACTGTCGCCAGTCATTTGCGTCGTGAATCTGGCTTTTTACCATGGCACAGAATGAAAGTTGCATTAGAGACTGCTACTGCTTTAGCTTATCTCCATGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTTGACAACACTTTTTGCTTAAAAGTTGCAGACTTTAGACTGTCAAAACTGTTCCCAAATGATGTCACACACGTCTCCACAGCTCCACAAGGAACCCCCGGCTATATGGATCCTGAATATCATCAATGCTACAGGCTTACAAACAAGAGTGATGTTTACAGCTTTGGAGTTGTACTTGTTGGCTGA

Protein sequence

>Msa0137320

MVLVYVVRLLFSHLTVLLLLVLTSKGNGHSDDCPESFDCGNLGLIRYPFTTLELRKCGALAIQGCDDLNQTAMKHVQFTKGGKLFQVTNINNHWSSGNTISIIDPNITKLLEKNACEAFSHVNITLPPSSPFGTFYMKEGITAFKCNRTQKLVINHPPNNFFKNNSCPHYDFYFGDSTISDDESNHSFTSCLSFHLPVIKLGFALSGNPFPYLTDEITFQFQSSNFCQQCSYHEKNIHCRVDRKGQIYCTERKGRSSTWKLGLVLGIGLLVIIITGLLFIWRCKQRVPDFYSNKYTKSDSVYDGVPVFSFKDLEVATKKIDSSRELGEGGFGTVYYVSLYGCTSHHSHELLLVYEYISNGTVASHLRRESGFLPWHRMKVALETATALAYLHASEIIHRDVKTNNILLDNTFCLKVADFRLSKLFPNDVTHVSTAPQGTPGYMDPEYHQCYRLTNKSDVYSFGVVLVG*