Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139250 | XP_013459055.1 | 93.915 | 378 | 19 | 1 | 11 | 384 | 16 | 393 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139250 | sp|Q8AVN9|ZN346_XENLA | 23.954 | 263 | 143 | 7 | 110 | 372 | 219 | 424 | 3.00e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139250 | A0A072UVJ5 | 93.915 | 378 | 19 | 1 | 11 | 384 | 16 | 393 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0139250 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139250 | MtrunA17_Chr3g0086321 | 93.915 | 378 | 19 | 1 | 11 | 384 | 16 | 393 | 0.0 | 717 |
| Msa0139250 | MtrunA17_Chr5g0447971 | 69.432 | 229 | 70 | 0 | 156 | 384 | 304 | 532 | 1.13e-103 | 316 |
| Msa0139250 | MtrunA17_Chr5g0447971 | 68.276 | 145 | 37 | 1 | 46 | 190 | 53 | 188 | 3.33e-55 | 189 |
| Msa0139250 | MtrunA17_Chr5g0447971 | 32.035 | 231 | 113 | 9 | 156 | 378 | 240 | 434 | 5.60e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139250 | AT5G61190.1 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 7.60e-22 | 98.2 |
| Msa0139250 | AT5G61190.1 | 25.118 | 211 | 118 | 6 | 112 | 284 | 289 | 497 | 2.01e-13 | 72.4 |
| Msa0139250 | AT5G61190.1 | 25.442 | 283 | 155 | 10 | 119 | 374 | 242 | 495 | 2.49e-13 | 72.0 |
| Msa0139250 | AT5G61190.10 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 7.71e-22 | 98.2 |
| Msa0139250 | AT5G61190.10 | 24.648 | 284 | 164 | 9 | 119 | 374 | 242 | 503 | 1.12e-12 | 70.1 |
| Msa0139250 | AT5G61190.10 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.86e-12 | 69.3 |
| Msa0139250 | AT5G61190.7 | 30.412 | 194 | 104 | 4 | 189 | 382 | 146 | 308 | 8.29e-22 | 98.2 |
| Msa0139250 | AT5G61190.7 | 24.825 | 286 | 161 | 10 | 119 | 374 | 148 | 409 | 1.36e-12 | 69.7 |
| Msa0139250 | AT5G61190.7 | 24.201 | 219 | 118 | 6 | 112 | 284 | 195 | 411 | 2.41e-12 | 68.9 |
| Msa0139250 | AT5G61190.3 | 30.412 | 194 | 104 | 4 | 189 | 382 | 146 | 308 | 8.29e-22 | 98.2 |
| Msa0139250 | AT5G61190.3 | 24.825 | 286 | 161 | 10 | 119 | 374 | 148 | 409 | 1.36e-12 | 69.7 |
| Msa0139250 | AT5G61190.3 | 24.201 | 219 | 118 | 6 | 112 | 284 | 195 | 411 | 2.41e-12 | 68.9 |
| Msa0139250 | AT5G61190.5 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.01e-21 | 97.8 |
| Msa0139250 | AT5G61190.5 | 24.648 | 284 | 164 | 9 | 119 | 374 | 242 | 503 | 1.28e-12 | 70.1 |
| Msa0139250 | AT5G61190.5 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.33e-12 | 69.3 |
| Msa0139250 | AT5G61190.9 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.02e-21 | 97.8 |
| Msa0139250 | AT5G61190.9 | 23.132 | 281 | 172 | 7 | 119 | 374 | 242 | 503 | 1.27e-12 | 70.1 |
| Msa0139250 | AT5G61190.9 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.18e-12 | 69.3 |
| Msa0139250 | AT5G61190.6 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.07e-21 | 97.8 |
| Msa0139250 | AT5G61190.6 | 24.648 | 284 | 164 | 9 | 119 | 374 | 242 | 503 | 1.30e-12 | 70.1 |
| Msa0139250 | AT5G61190.6 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.19e-12 | 69.3 |
| Msa0139250 | AT5G61190.11 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.10e-21 | 97.8 |
| Msa0139250 | AT5G61190.11 | 24.648 | 284 | 164 | 9 | 119 | 374 | 242 | 503 | 1.23e-12 | 70.1 |
| Msa0139250 | AT5G61190.11 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.43e-12 | 68.9 |
| Msa0139250 | AT5G61190.8 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.69e-21 | 97.1 |
| Msa0139250 | AT5G61190.8 | 23.132 | 281 | 172 | 7 | 119 | 374 | 242 | 503 | 1.11e-12 | 70.1 |
| Msa0139250 | AT5G61190.8 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.50e-12 | 68.9 |
| Msa0139250 | AT5G61190.4 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.77e-21 | 97.1 |
| Msa0139250 | AT5G61190.4 | 23.132 | 281 | 172 | 7 | 119 | 374 | 242 | 503 | 9.57e-13 | 70.1 |
| Msa0139250 | AT5G61190.4 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.44e-12 | 68.9 |
| Msa0139250 | AT5G61190.2 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.77e-21 | 97.1 |
| Msa0139250 | AT5G61190.2 | 23.132 | 281 | 172 | 7 | 119 | 374 | 242 | 503 | 9.57e-13 | 70.1 |
| Msa0139250 | AT5G61190.2 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.44e-12 | 68.9 |
Find 108 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGCCTTCTTTGGTTT+TGG | 0.255884 | 1_3:-72825328 | None:intergenic |
| ATCAGGGAATGATGAATAAT+AGG | 0.259476 | 1_3:-72820942 | None:intergenic |
| ACATGGCCACCACAAATTTA+TGG | 0.268191 | 1_3:+72822968 | Msa0139250:CDS |
| ACTTATTACTGTTTGTGTTT+TGG | 0.270098 | 1_3:+72825677 | Msa0139250:three_prime_UTR |
| TCAAGTTCTGATGCCTTCTT+TGG | 0.279559 | 1_3:-72825334 | None:intergenic |
| TCCGCAACAAATACTTTAAT+CGG | 0.307128 | 1_3:+72825277 | Msa0139250:CDS |
| CGCTTGAATTCGGCAATAGA+TGG | 0.316684 | 1_3:-72825058 | None:intergenic |
| TTGTTGTTGAGGGTACATTT+TGG | 0.325588 | 1_3:-72820876 | None:intergenic |
| ACAAATTGGGTATGAATTCA+TGG | 0.325657 | 1_3:-72820728 | None:intergenic |
| GTTCCTGTAACACAAGTAAA+AGG | 0.331034 | 1_3:-72825656 | None:intergenic |
| GCAGAATCAACCTGTTTCTT+AGG | 0.337690 | 1_3:-72823232 | None:intergenic |
| TGGGAGGTGTAAAGAGAAAC+AGG | 0.338861 | 1_3:-72821022 | None:intergenic |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.356623 | 1_3:-72825197 | None:intergenic |
| TTTAATTGCTAAGTGGTAGA+TGG | 0.360146 | 1_3:+72825750 | Msa0139250:three_prime_UTR |
| AACACCGTTACGCTTGAATT+CGG | 0.361255 | 1_3:-72825068 | None:intergenic |
| ATACAAGGACAAGGGTTAAT+TGG | 0.382675 | 1_3:+72823187 | Msa0139250:CDS |
| CACGCAGAAGGTAAACTTGC+AGG | 0.393751 | 1_3:-72822938 | None:intergenic |
| ATGCAGTTTGTCATTGCTAA+TGG | 0.394861 | 1_3:+72825597 | Msa0139250:three_prime_UTR |
| AACCAACAGATTATCACAAT+TGG | 0.400223 | 1_3:+72821044 | Msa0139250:CDS |
| GGAGGATGAAGTGAAGGATC+AGG | 0.403946 | 1_3:-72820959 | None:intergenic |
| GCAATCCGAGCCTAAGAAAC+AGG | 0.404268 | 1_3:+72823222 | Msa0139250:CDS |
| GCATATATCAAACATCTTGC+TGG | 0.416947 | 1_3:+72823298 | Msa0139250:CDS |
| CACTTCACATCTCAAAGCTT+TGG | 0.420423 | 1_3:-72823032 | None:intergenic |
| GAAGGAGGAGCTGCAGTTGA+TGG | 0.421675 | 1_3:+72825385 | Msa0139250:CDS |
| TGTAAACTTGTGAATCAAAA+GGG | 0.422622 | 1_3:-72820804 | None:intergenic |
| TAAAGTATTTGTTGCGGAGG+CGG | 0.426114 | 1_3:-72825272 | None:intergenic |
| AAGCTTTGGTGACATTGGTT+TGG | 0.436170 | 1_3:-72823018 | None:intergenic |
| GCAAGATTAATTGTAACAGC+AGG | 0.443520 | 1_3:+72825152 | Msa0139250:CDS |
| AAGAAACGTAAAGTTGTAGA+AGG | 0.448799 | 1_3:+72825367 | Msa0139250:CDS |
| TGTTGCGGAGGCGGTGGAAG+TGG | 0.452068 | 1_3:-72825263 | None:intergenic |
| GTTGCCTTGATGTCTAATAA+TGG | 0.452518 | 1_3:+72825028 | Msa0139250:CDS |
| TGTTGTTGCTGGAAATTGTA+AGG | 0.454821 | 1_3:-72820911 | None:intergenic |
| TCAGGGAATGATGAATAATA+GGG | 0.455305 | 1_3:-72820941 | None:intergenic |
| GTGTAAACTTGTGAATCAAA+AGG | 0.458504 | 1_3:-72820805 | None:intergenic |
| TGGGAGAAAGCATGCTGCTC+AGG | 0.459949 | 1_3:+72823318 | Msa0139250:CDS |
| TCTCATCTAGACTTGAAGAC+AGG | 0.469108 | 1_3:+72825563 | Msa0139250:three_prime_UTR |
| AGCTGATCGGTCACTGGTTG+AGG | 0.470018 | 1_3:+72825525 | Msa0139250:exon |
| ATCAACCTGTTTCTTAGGCT+CGG | 0.472485 | 1_3:-72823227 | None:intergenic |
| GGTGAAAATTGAAAACTGTC+TGG | 0.474169 | 1_3:-72825447 | None:intergenic |
| CAAATTGGGTATGAATTCAT+GGG | 0.476095 | 1_3:-72820727 | None:intergenic |
| GTCTCGTTGCCATAAATTTG+TGG | 0.477870 | 1_3:-72822977 | None:intergenic |
| CTTCTAATATTGCAGGCTGT+TGG | 0.480500 | 1_3:+72822890 | Msa0139250:intron |
| GAGCTTGGTATTGTTGTTGA+GGG | 0.489208 | 1_3:-72820886 | None:intergenic |
| GGCTCGGATTGCTTGACTAC+GGG | 0.489539 | 1_3:-72823211 | None:intergenic |
| TTTGCAAGTGGGTCAGTGCC+AGG | 0.495030 | 1_3:-72820980 | None:intergenic |
| AGTATTTGTTGCGGAGGCGG+TGG | 0.496733 | 1_3:-72825269 | None:intergenic |
| CATATATCAAACATCTTGCT+GGG | 0.508931 | 1_3:+72823299 | Msa0139250:CDS |
| TGGTTGAGCTGATCGGTCAC+TGG | 0.510188 | 1_3:+72825519 | Msa0139250:exon |
| AGGCTCGGATTGCTTGACTA+CGG | 0.513657 | 1_3:-72823212 | None:intergenic |
| TGAGCTTGGTATTGTTGTTG+AGG | 0.516461 | 1_3:-72820887 | None:intergenic |
| TCTCAAAGCTTTGGTGACAT+TGG | 0.516531 | 1_3:-72823023 | None:intergenic |
| TATCTGATGGGTTCAGATTG+AGG | 0.517150 | 1_3:-72821073 | None:intergenic |
| TTGCAAACCTCAATGCATCA+TGG | 0.519312 | 1_3:-72825721 | None:intergenic |
| TCTTATGAAAGTCACATAGC+TGG | 0.520481 | 1_3:+72823082 | Msa0139250:CDS |
| GAATTCAAGCGTAACGGTGT+TGG | 0.521387 | 1_3:+72825070 | Msa0139250:CDS |
| GATCCTTCACTTCATCCTCC+TGG | 0.522615 | 1_3:+72820962 | Msa0139250:CDS |
| ACATGCTGCTATGGTGAAGA+AGG | 0.523999 | 1_3:+72825483 | Msa0139250:CDS |
| AATTGTGATAATCTGTTGGT+TGG | 0.524110 | 1_3:-72821042 | None:intergenic |
| TTCGCATGAGATGTAATAGT+AGG | 0.525742 | 1_3:-72823142 | None:intergenic |
| CGATCAACCAAAACCAAAGA+AGG | 0.528394 | 1_3:+72825321 | Msa0139250:CDS |
| AATGCCATTATTAGACATCA+AGG | 0.532248 | 1_3:-72825032 | None:intergenic |
| CTCATCTAGACTTGAAGACA+GGG | 0.533305 | 1_3:+72825564 | Msa0139250:three_prime_UTR |
| CTTCTGCGTGGAATGGTACA+TGG | 0.535273 | 1_3:+72822951 | Msa0139250:CDS |
| GCTTGAATTCGGCAATAGAT+GGG | 0.537412 | 1_3:-72825057 | None:intergenic |
| ATTGTGATAATCTGTTGGTT+GGG | 0.539629 | 1_3:-72821041 | None:intergenic |
| CGGTCACTGGTTGAGCTGAT+CGG | 0.541750 | 1_3:+72825512 | Msa0139250:exon |
| CCGCAACAAATACTTTAATC+GGG | 0.543509 | 1_3:+72825278 | Msa0139250:CDS |
| AAGAAGGCAGGATCGGTCAC+TGG | 0.543881 | 1_3:+72825499 | Msa0139250:CDS |
| ACTTACAAGATCATATCTGA+TGG | 0.547707 | 1_3:-72821086 | None:intergenic |
| TAAGAAACACTTGAAGAACT+TGG | 0.549430 | 1_3:+72825201 | Msa0139250:CDS |
| TTGGTGACATTGGTTTGGTT+AGG | 0.549676 | 1_3:-72823013 | None:intergenic |
| AGTTTACCTTCTGCGTGGAA+TGG | 0.550393 | 1_3:+72822944 | Msa0139250:CDS |
| CAAGATTAATTGTAACAGCA+GGG | 0.550872 | 1_3:+72825153 | Msa0139250:CDS |
| AAAAGCTGCCAAGAAAATCA+AGG | 0.552640 | 1_3:+72825102 | Msa0139250:CDS |
| GTAAACTTGTGAATCAAAAG+GGG | 0.555334 | 1_3:-72820803 | None:intergenic |
| AAATGAGTTTAATTGCTAAG+TGG | 0.555864 | 1_3:+72825743 | Msa0139250:three_prime_UTR |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.561695 | 1_3:+72825487 | Msa0139250:CDS |
| CCCGATTAAAGTATTTGTTG+CGG | 0.564165 | 1_3:-72825278 | None:intergenic |
| TTGATGTCTAATAATGGCAT+TGG | 0.569058 | 1_3:+72825034 | Msa0139250:CDS |
| GTGATAATCTGTTGGTTGGG+AGG | 0.571099 | 1_3:-72821038 | None:intergenic |
| ATATACATTACACACTTAGC+CGG | 0.575976 | 1_3:+72825178 | Msa0139250:CDS |
| ATAACTTCCATGATGCATTG+AGG | 0.576340 | 1_3:+72825714 | Msa0139250:three_prime_UTR |
| GAAACAGGTTGATTCTGCAA+CGG | 0.579888 | 1_3:+72823237 | Msa0139250:CDS |
| ATCCAATTGTGATAATCTGT+TGG | 0.584557 | 1_3:-72821046 | None:intergenic |
| TCAAGGTTGCTCAGTCTGCA+TGG | 0.588753 | 1_3:+72825119 | Msa0139250:CDS |
| GGAAATTGTAAGGTTGAGCT+TGG | 0.592936 | 1_3:-72820901 | None:intergenic |
| GTGCCAGGAGGATGAAGTGA+AGG | 0.595047 | 1_3:-72820965 | None:intergenic |
| ACTGACACAAGTAGTATACA+AGG | 0.597057 | 1_3:+72823172 | Msa0139250:CDS |
| TGGTCAGAAACATGCTGCTA+TGG | 0.598112 | 1_3:+72825474 | Msa0139250:CDS |
| ATCGGGCCACAAGAAAAGCC+AGG | 0.598973 | 1_3:+72825295 | Msa0139250:CDS |
| CATGTACCATTCCACGCAGA+AGG | 0.601401 | 1_3:-72822950 | None:intergenic |
| GAGGATGAAGTGAAGGATCA+GGG | 0.602017 | 1_3:-72820958 | None:intergenic |
| AAACGTAAAGTTGTAGAAGG+AGG | 0.609951 | 1_3:+72825370 | Msa0139250:CDS |
| TATGGTGAAGAAGGCAGGAT+CGG | 0.613734 | 1_3:+72825492 | Msa0139250:CDS |
| CTTACAAGATCATATCTGAT+GGG | 0.617080 | 1_3:-72821085 | None:intergenic |
| AAAGATGTTGAATTTGCAAG+TGG | 0.619628 | 1_3:-72820992 | None:intergenic |
| GATTAAAGTATTTGTTGCGG+AGG | 0.640719 | 1_3:-72825275 | None:intergenic |
| CAGCATGTTTCTGACCAACA+AGG | 0.643975 | 1_3:-72825468 | None:intergenic |
| TCGTTGCCATAAATTTGTGG+TGG | 0.644262 | 1_3:-72822974 | None:intergenic |
| AAGATGTTGAATTTGCAAGT+GGG | 0.649561 | 1_3:-72820991 | None:intergenic |
| ACAAGTAGTATACAAGGACA+AGG | 0.651454 | 1_3:+72823178 | Msa0139250:CDS |
| CTGCAAGTTTACCTTCTGCG+TGG | 0.655416 | 1_3:+72822939 | Msa0139250:CDS |
| AATGTGCACTTTATGCAATG+TGG | 0.705637 | 1_3:+72825414 | Msa0139250:CDS |
| ATTGCCGAATTCAAGCGTAA+CGG | 0.711887 | 1_3:+72825064 | Msa0139250:CDS |
| GCAAGTGGGTCAGTGCCAGG+AGG | 0.726366 | 1_3:-72820977 | None:intergenic |
| TAAACTTGTGAATCAAAAGG+GGG | 0.729401 | 1_3:-72820802 | None:intergenic |
| CAAGTAGTATACAAGGACAA+GGG | 0.731447 | 1_3:+72823179 | Msa0139250:CDS |
| GAGGTGTAAAGAGAAACAGG+AGG | 0.817855 | 1_3:-72821019 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTTTAGAAA+CGG | + | chr1_3:72822135-72822154 | Msa0139250:intron | 10.0% |
| !!! | AAAAACATTTTTTAAAAATG+TGG | + | chr1_3:72822658-72822677 | Msa0139250:intron | 10.0% |
| !! | TTTAATACAAATAATGTCAA+TGG | + | chr1_3:72821953-72821972 | Msa0139250:intron | 15.0% |
| !! | TAATACAAATAATTGTCAAA+TGG | + | chr1_3:72822464-72822483 | Msa0139250:intron | 15.0% |
| !! | TCATATATTGTTAATAGAAT+TGG | + | chr1_3:72822735-72822754 | Msa0139250:intron | 15.0% |
| !! | CATATATTGTTAATAGAATT+GGG | + | chr1_3:72822736-72822755 | Msa0139250:intron | 15.0% |
| !! | AATATTAAAAGGATGAAAAT+TGG | + | chr1_3:72823530-72823549 | Msa0139250:intron | 15.0% |
| !! | TCCAATTAAGATAAAAATAA+CGG | - | chr1_3:72823596-72823615 | None:intergenic | 15.0% |
| !! | TATAATATCAATTGTTAATC+AGG | + | chr1_3:72824199-72824218 | Msa0139250:intron | 15.0% |
| !! | TGATAAATAAATATCATATG+TGG | + | chr1_3:72824630-72824649 | Msa0139250:intron | 15.0% |
| !!! | ATTAAGTAAAAATAGTCTTT+TGG | + | chr1_3:72824676-72824695 | Msa0139250:intron | 15.0% |
| !!! | TTAAGTAAAAATAGTCTTTT+GGG | + | chr1_3:72824677-72824696 | Msa0139250:intron | 15.0% |
| !!! | TTTTCTTATGTTTTTTCATC+TGG | + | chr1_3:72821159-72821178 | Msa0139250:intron | 20.0% |
| !!! | TTTCTTATGTTTTTTCATCT+GGG | + | chr1_3:72821160-72821179 | Msa0139250:intron | 20.0% |
| !! | TTTGAAAACTAAGATCAAAA+GGG | - | chr1_3:72821287-72821306 | None:intergenic | 20.0% |
| !! | ATTTGAAAACTAAGATCAAA+AGG | - | chr1_3:72821288-72821307 | None:intergenic | 20.0% |
| !!! | TTTTCTTATGTTATGTCATT+TGG | + | chr1_3:72821326-72821345 | Msa0139250:intron | 20.0% |
| !!! | TTTCTTATGTTATGTCATTT+GGG | + | chr1_3:72821327-72821346 | Msa0139250:intron | 20.0% |
| !!! | TCATAGTTAGAGTTTTAAAA+TGG | + | chr1_3:72821616-72821635 | Msa0139250:intron | 20.0% |
| !!! | TCATAATTAGGGTTTTTAAA+TGG | + | chr1_3:72821711-72821730 | Msa0139250:intron | 20.0% |
| !!! | ATAATCAGGGTTTTTAAAAT+GGG | + | chr1_3:72821763-72821782 | Msa0139250:intron | 20.0% |
| !! | AAAAGTGAGAACAATAAAAT+AGG | + | chr1_3:72822777-72822796 | Msa0139250:intron | 20.0% |
| !! | AAAGTGAGAACAATAAAATA+GGG | + | chr1_3:72822778-72822797 | Msa0139250:intron | 20.0% |
| !! | ATTGTCTACAATATAGAATA+AGG | - | chr1_3:72823414-72823433 | None:intergenic | 20.0% |
| !!! | ACCGTTATTTTTATCTTAAT+TGG | + | chr1_3:72823592-72823611 | Msa0139250:intron | 20.0% |
| !!! | GGTTTTTAAAAGTTGAAAAA+AGG | - | chr1_3:72824285-72824304 | None:intergenic | 20.0% |
| !!! | GAATAAGTTGAATACAATAA+TGG | - | chr1_3:72824430-72824449 | None:intergenic | 20.0% |
| !! | CAAAATAAATAAAGAACAAG+TGG | - | chr1_3:72824507-72824526 | None:intergenic | 20.0% |
| !! | AAAAAATACTTGTTTGTTCA+AGG | - | chr1_3:72824780-72824799 | None:intergenic | 20.0% |
| !! | TTATCTATAGATATACATCA+AGG | - | chr1_3:72824871-72824890 | None:intergenic | 20.0% |
| ! | TGTAAACTTGTGAATCAAAA+GGG | - | chr1_3:72820807-72820826 | None:intergenic | 25.0% |
| ! | TTCGAAAACAATGATCAAAA+GGG | - | chr1_3:72821120-72821139 | None:intergenic | 25.0% |
| ! | ATTCGAAAACAATGATCAAA+AGG | - | chr1_3:72821121-72821140 | None:intergenic | 25.0% |
| !!! | TTCATTTTAACGTAGTTGTT+TGG | + | chr1_3:72821251-72821270 | Msa0139250:intron | 25.0% |
| !! | TTCTTATGTTATGTCATTTG+GGG | + | chr1_3:72821328-72821347 | Msa0139250:intron | 25.0% |
| !!! | ATGAAATAGTGGATAAGTTT+TGG | + | chr1_3:72821482-72821501 | Msa0139250:intron | 25.0% |
| ! | TGTTGGAATTCATCTTAATT+AGG | + | chr1_3:72821553-72821572 | Msa0139250:intron | 25.0% |
| ! | GTTGGAATTCATCTTAATTA+GGG | + | chr1_3:72821554-72821573 | Msa0139250:intron | 25.0% |
| !!! | CTTAATTAGGGTTTTTAGAA+TGG | + | chr1_3:72821566-72821585 | Msa0139250:intron | 25.0% |
| !!! | TTTTAGAATGGAAATGATTG+TGG | + | chr1_3:72821578-72821597 | Msa0139250:intron | 25.0% |
| ! | ATTTAGCATTCACAAATGAA+AGG | + | chr1_3:72821669-72821688 | Msa0139250:intron | 25.0% |
| !! | ATAGCGTGATTTTCATAATT+AGG | + | chr1_3:72821699-72821718 | Msa0139250:intron | 25.0% |
| !! | TAGCGTGATTTTCATAATTA+GGG | + | chr1_3:72821700-72821719 | Msa0139250:intron | 25.0% |
| !!! | CATAATCAGGGTTTTTAAAA+TGG | + | chr1_3:72821762-72821781 | Msa0139250:intron | 25.0% |
| ! | AATACAAATAATGTCAATGG+TGG | + | chr1_3:72821956-72821975 | Msa0139250:intron | 25.0% |
| ! | TGGGAAAAAAAAACAAACAA+GGG | + | chr1_3:72822208-72822227 | Msa0139250:intron | 25.0% |
| ! | AAGAAGAAAAAACATACAAG+TGG | - | chr1_3:72822403-72822422 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCTTTGTTAACG+TGG | + | chr1_3:72822411-72822430 | Msa0139250:intron | 25.0% |
| ! | AAATTCAAAACCCTAACATA+CGG | - | chr1_3:72822828-72822847 | None:intergenic | 25.0% |
| !!! | GTTAGGGTTTTGAATTTTAT+TGG | + | chr1_3:72822831-72822850 | Msa0139250:intron | 25.0% |
| ! | GACAGAACAAGAATATTAAA+AGG | + | chr1_3:72823519-72823538 | Msa0139250:intron | 25.0% |
| ! | CTACAGAGTTAATTAGTAAA+TGG | - | chr1_3:72823670-72823689 | None:intergenic | 25.0% |
| ! | CATTTACTAATTAACTCTGT+AGG | + | chr1_3:72823668-72823687 | Msa0139250:intron | 25.0% |
| !!! | TTACATGCATTTTAGCTAAA+TGG | - | chr1_3:72823694-72823713 | None:intergenic | 25.0% |
| !! | AACAACAATAGTCTTTTAGT+AGG | + | chr1_3:72824143-72824162 | Msa0139250:intron | 25.0% |
| ! | TGTTTCAAAGAAATGAAGTT+TGG | - | chr1_3:72824594-72824613 | None:intergenic | 25.0% |
| ! | ACAAATAAAATGAGCAACTT+GGG | - | chr1_3:72824930-72824949 | None:intergenic | 25.0% |
| ! | AACAAATAAAATGAGCAACT+TGG | - | chr1_3:72824931-72824950 | None:intergenic | 25.0% |
| !! | ACTTATTACTGTTTGTGTTT+TGG | + | chr1_3:72825677-72825696 | Msa0139250:three_prime_UTR | 25.0% |
| ! | AAATGAGTTTAATTGCTAAG+TGG | + | chr1_3:72825743-72825762 | Msa0139250:three_prime_UTR | 25.0% |
| CAAATTGGGTATGAATTCAT+GGG | - | chr1_3:72820730-72820749 | None:intergenic | 30.0% | |
| ACAAATTGGGTATGAATTCA+TGG | - | chr1_3:72820731-72820750 | None:intergenic | 30.0% | |
| TAAACTTGTGAATCAAAAGG+GGG | - | chr1_3:72820805-72820824 | None:intergenic | 30.0% | |
| GTAAACTTGTGAATCAAAAG+GGG | - | chr1_3:72820806-72820825 | None:intergenic | 30.0% | |
| GTGTAAACTTGTGAATCAAA+AGG | - | chr1_3:72820808-72820827 | None:intergenic | 30.0% | |
| TCAGGGAATGATGAATAATA+GGG | - | chr1_3:72820944-72820963 | None:intergenic | 30.0% | |
| ATCAGGGAATGATGAATAAT+AGG | - | chr1_3:72820945-72820964 | None:intergenic | 30.0% | |
| AAGATGTTGAATTTGCAAGT+GGG | - | chr1_3:72820994-72821013 | None:intergenic | 30.0% | |
| AAAGATGTTGAATTTGCAAG+TGG | - | chr1_3:72820995-72821014 | None:intergenic | 30.0% | |
| ! | ATTGTGATAATCTGTTGGTT+GGG | - | chr1_3:72821044-72821063 | None:intergenic | 30.0% |
| AATTGTGATAATCTGTTGGT+TGG | - | chr1_3:72821045-72821064 | None:intergenic | 30.0% | |
| AACCAACAGATTATCACAAT+TGG | + | chr1_3:72821044-72821063 | Msa0139250:CDS | 30.0% | |
| ATCCAATTGTGATAATCTGT+TGG | - | chr1_3:72821049-72821068 | None:intergenic | 30.0% | |
| CTTACAAGATCATATCTGAT+GGG | - | chr1_3:72821088-72821107 | None:intergenic | 30.0% | |
| ACTTACAAGATCATATCTGA+TGG | - | chr1_3:72821089-72821108 | None:intergenic | 30.0% | |
| !! | TGCATTTTGTTGTAGTTGTT+AGG | + | chr1_3:72821437-72821456 | Msa0139250:intron | 30.0% |
| GATGTCTAGTTATGAAATAG+TGG | + | chr1_3:72821471-72821490 | Msa0139250:intron | 30.0% | |
| TAATGTGAAGTTCTGTTAAG+TGG | + | chr1_3:72821529-72821548 | Msa0139250:intron | 30.0% | |
| AATGTGAAGTTCTGTTAAGT+GGG | + | chr1_3:72821530-72821549 | Msa0139250:intron | 30.0% | |
| !! | AGAGTATCGTAAAACAATAG+TGG | - | chr1_3:72821932-72821951 | None:intergenic | 30.0% |
| GCTATCTATATTGTCCTATT+CGG | - | chr1_3:72822039-72822058 | None:intergenic | 30.0% | |
| GTGGGAAAAAAAAACAAACA+AGG | + | chr1_3:72822207-72822226 | Msa0139250:intron | 30.0% | |
| GGGAAAAAAAAACAAACAAG+GGG | + | chr1_3:72822209-72822228 | Msa0139250:intron | 30.0% | |
| AAAAACAAACAAGGGGAAAT+CGG | + | chr1_3:72822216-72822235 | Msa0139250:intron | 30.0% | |
| GATATCCATATTGTCCTATT+CGG | - | chr1_3:72822550-72822569 | None:intergenic | 30.0% | |
| ATAGGACAATATGGATATCA+TGG | + | chr1_3:72822551-72822570 | Msa0139250:intron | 30.0% | |
| GAAAGATGAATGATGATAGT+TGG | + | chr1_3:72822680-72822699 | Msa0139250:intron | 30.0% | |
| AATTCAAAACCCTAACATAC+GGG | - | chr1_3:72822827-72822846 | None:intergenic | 30.0% | |
| TTCAATGCTTCTAATATTGC+AGG | + | chr1_3:72822883-72822902 | Msa0139250:intron | 30.0% | |
| CATATATCAAACATCTTGCT+GGG | + | chr1_3:72823299-72823318 | Msa0139250:CDS | 30.0% | |
| GTTGCATGTAATCTTACAAA+AGG | - | chr1_3:72823364-72823383 | None:intergenic | 30.0% | |
| GTTTAGCTAATTAACACTGT+AGG | + | chr1_3:72823644-72823663 | Msa0139250:intron | 30.0% | |
| TAAAATGCATGTAAGATAGC+TGG | + | chr1_3:72823700-72823719 | Msa0139250:intron | 30.0% | |
| GTATGAAAATAAGAGAACCA+TGG | - | chr1_3:72823816-72823835 | None:intergenic | 30.0% | |
| !! | GGAAATAAAAAGTGTTCTTC+TGG | + | chr1_3:72823892-72823911 | Msa0139250:intron | 30.0% |
| AACACAACACTAAACTCATT+TGG | - | chr1_3:72823958-72823977 | None:intergenic | 30.0% | |
| TTTAGTAGGAGTAGATTACA+TGG | + | chr1_3:72824157-72824176 | Msa0139250:intron | 30.0% | |
| ATAATTCAGGGATAACAGAA+GGG | + | chr1_3:72824227-72824246 | Msa0139250:intron | 30.0% | |
| !! | CAACTTTTAAAAACCATTGC+CGG | + | chr1_3:72824290-72824309 | Msa0139250:intron | 30.0% |
| TGCTTAGAAATTCTGTACTT+CGG | + | chr1_3:72824566-72824585 | Msa0139250:intron | 30.0% | |
| !! | TAATTTTGACGACAACAATG+AGG | + | chr1_3:72824704-72824723 | Msa0139250:intron | 30.0% |
| AACAATGAGGACCTTATATA+CGG | + | chr1_3:72824717-72824736 | Msa0139250:intron | 30.0% | |
| CAAATAAAATGAGCAACTTG+GGG | - | chr1_3:72824929-72824948 | None:intergenic | 30.0% | |
| ACTCAGAAACATTCAACTAA+TGG | - | chr1_3:72824985-72825004 | None:intergenic | 30.0% | |
| AATGCCATTATTAGACATCA+AGG | - | chr1_3:72825035-72825054 | None:intergenic | 30.0% | |
| TTGATGTCTAATAATGGCAT+TGG | + | chr1_3:72825034-72825053 | Msa0139250:CDS | 30.0% | |
| CAAGATTAATTGTAACAGCA+GGG | + | chr1_3:72825153-72825172 | Msa0139250:CDS | 30.0% | |
| ATATACATTACACACTTAGC+CGG | + | chr1_3:72825178-72825197 | Msa0139250:CDS | 30.0% | |
| TCAAATCCAAAAATCGATGT+CGG | + | chr1_3:72825232-72825251 | Msa0139250:CDS | 30.0% | |
| TCCGCAACAAATACTTTAAT+CGG | + | chr1_3:72825277-72825296 | Msa0139250:CDS | 30.0% | |
| AAGAAACGTAAAGTTGTAGA+AGG | + | chr1_3:72825367-72825386 | Msa0139250:CDS | 30.0% | |
| ! | GTTTTCAATTTTCACCTTGT+TGG | + | chr1_3:72825454-72825473 | Msa0139250:CDS | 30.0% |
| TTTAATTGCTAAGTGGTAGA+TGG | + | chr1_3:72825750-72825769 | Msa0139250:three_prime_UTR | 30.0% | |
| !!! | TTGAGGGTACATTTTGGTTT+TGG | - | chr1_3:72820873-72820892 | None:intergenic | 35.0% |
| !! | TTGTTGTTGAGGGTACATTT+TGG | - | chr1_3:72820879-72820898 | None:intergenic | 35.0% |
| TGTTGTTGCTGGAAATTGTA+AGG | - | chr1_3:72820914-72820933 | None:intergenic | 35.0% | |
| ! | TTATGTTATGTCATTTGGGG+TGG | + | chr1_3:72821331-72821350 | Msa0139250:intron | 35.0% |
| !! | AGTGTTTTAAGTCGTGATTG+CGG | - | chr1_3:72821878-72821897 | None:intergenic | 35.0% |
| !! | CTATTCGGTGTTGTCAATAA+CGG | - | chr1_3:72822024-72822043 | None:intergenic | 35.0% |
| ATATCTAGAAGTCAAACTCG+TGG | + | chr1_3:72822080-72822099 | Msa0139250:intron | 35.0% | |
| !!! | TGTATCGGGTGGTTTTTTAA+GGG | - | chr1_3:72822272-72822291 | None:intergenic | 35.0% |
| !!! | TTGTATCGGGTGGTTTTTTA+AGG | - | chr1_3:72822273-72822292 | None:intergenic | 35.0% |
| !! | GGTTTGGTTTCTTTTGTATC+GGG | - | chr1_3:72822286-72822305 | None:intergenic | 35.0% |
| !! | GGGTTTGGTTTCTTTTGTAT+CGG | - | chr1_3:72822287-72822306 | None:intergenic | 35.0% |
| !! | TATTCGGTGTTGTCAATAAC+AGG | - | chr1_3:72822023-72822042 | None:intergenic | 35.0% |
| TGTTATTGACAACACCGAAT+AGG | + | chr1_3:72822533-72822552 | Msa0139250:intron | 35.0% | |
| GTGAGAACAATAAAATAGGG+AGG | + | chr1_3:72822781-72822800 | Msa0139250:intron | 35.0% | |
| ! | TTGATTTGATCCCGTATGTT+AGG | + | chr1_3:72822814-72822833 | Msa0139250:intron | 35.0% |
| TGATTTGATCCCGTATGTTA+GGG | + | chr1_3:72822815-72822834 | Msa0139250:intron | 35.0% | |
| TCTTATGAAAGTCACATAGC+TGG | + | chr1_3:72823082-72823101 | Msa0139250:CDS | 35.0% | |
| TTCGCATGAGATGTAATAGT+AGG | - | chr1_3:72823145-72823164 | None:intergenic | 35.0% | |
| ACTGACACAAGTAGTATACA+AGG | + | chr1_3:72823172-72823191 | Msa0139250:CDS | 35.0% | |
| ACAAGTAGTATACAAGGACA+AGG | + | chr1_3:72823178-72823197 | Msa0139250:CDS | 35.0% | |
| CAAGTAGTATACAAGGACAA+GGG | + | chr1_3:72823179-72823198 | Msa0139250:CDS | 35.0% | |
| ATACAAGGACAAGGGTTAAT+TGG | + | chr1_3:72823187-72823206 | Msa0139250:CDS | 35.0% | |
| GCATATATCAAACATCTTGC+TGG | + | chr1_3:72823298-72823317 | Msa0139250:CDS | 35.0% | |
| ACATAATGCACACACTTGTA+TGG | + | chr1_3:72823452-72823471 | Msa0139250:intron | 35.0% | |
| TGTACCTATTCTCTTGTTCA+TGG | + | chr1_3:72823560-72823579 | Msa0139250:intron | 35.0% | |
| AGAACCATGAACAAGAGAAT+AGG | - | chr1_3:72823567-72823586 | None:intergenic | 35.0% | |
| TTATCTTAATTGGACCCACA+AGG | + | chr1_3:72823602-72823621 | Msa0139250:intron | 35.0% | |
| ! | TTGTGGCTTTTGCAAAATCA+CGG | - | chr1_3:72823775-72823794 | None:intergenic | 35.0% |
| ! | CAAAAGCCACAAAGTGATTT+TGG | + | chr1_3:72823783-72823802 | Msa0139250:intron | 35.0% |
| GAAAATAAGAGAACCATGGT+GGG | - | chr1_3:72823812-72823831 | None:intergenic | 35.0% | |
| TGAAAATAAGAGAACCATGG+TGG | - | chr1_3:72823813-72823832 | None:intergenic | 35.0% | |
| ! | TTTTTCGCAGTGGATAAGTA+AGG | - | chr1_3:72823866-72823885 | None:intergenic | 35.0% |
| AGATGAAGACAGGCTATAAA+TGG | + | chr1_3:72823915-72823934 | Msa0139250:intron | 35.0% | |
| !!! | CTATAAATGGAGGGCATTTT+GGG | + | chr1_3:72823928-72823947 | Msa0139250:intron | 35.0% |
| TAATCAGGTCTCCATAATTC+AGG | + | chr1_3:72824214-72824233 | Msa0139250:intron | 35.0% | |
| AATCAGGTCTCCATAATTCA+GGG | + | chr1_3:72824215-72824234 | Msa0139250:intron | 35.0% | |
| CTTCTGTTATCCCTGAATTA+TGG | - | chr1_3:72824228-72824247 | None:intergenic | 35.0% | |
| CATAATTCAGGGATAACAGA+AGG | + | chr1_3:72824226-72824245 | Msa0139250:intron | 35.0% | |
| GCTTAGAAATTCTGTACTTC+GGG | + | chr1_3:72824567-72824586 | Msa0139250:intron | 35.0% | |
| !!! | TATTTTTTGCGATCCACGAT+TGG | + | chr1_3:72824792-72824811 | Msa0139250:intron | 35.0% |
| GTTGCCTTGATGTCTAATAA+TGG | + | chr1_3:72825028-72825047 | Msa0139250:CDS | 35.0% | |
| !! | TTCTTGGCAGCTTTTTGAAA+TGG | - | chr1_3:72825097-72825116 | None:intergenic | 35.0% |
| AAAAGCTGCCAAGAAAATCA+AGG | + | chr1_3:72825102-72825121 | Msa0139250:CDS | 35.0% | |
| GCAAGATTAATTGTAACAGC+AGG | + | chr1_3:72825152-72825171 | Msa0139250:CDS | 35.0% | |
| ! | GATTAAAGTATTTGTTGCGG+AGG | - | chr1_3:72825278-72825297 | None:intergenic | 35.0% |
| ! | CCCGATTAAAGTATTTGTTG+CGG | - | chr1_3:72825281-72825300 | None:intergenic | 35.0% |
| CCGCAACAAATACTTTAATC+GGG | + | chr1_3:72825278-72825297 | Msa0139250:CDS | 35.0% | |
| !!! | CTTCTTTGGTTTTGGTTGAT+CGG | - | chr1_3:72825323-72825342 | None:intergenic | 35.0% |
| AAACGTAAAGTTGTAGAAGG+AGG | + | chr1_3:72825370-72825389 | Msa0139250:CDS | 35.0% | |
| AATGTGCACTTTATGCAATG+TGG | + | chr1_3:72825414-72825433 | Msa0139250:CDS | 35.0% | |
| GGTGAAAATTGAAAACTGTC+TGG | - | chr1_3:72825450-72825469 | None:intergenic | 35.0% | |
| ATGCAGTTTGTCATTGCTAA+TGG | + | chr1_3:72825597-72825616 | Msa0139250:three_prime_UTR | 35.0% | |
| ! | TAGCCTTTTACTTGTGTTAC+AGG | + | chr1_3:72825653-72825672 | Msa0139250:three_prime_UTR | 35.0% |
| GTTCCTGTAACACAAGTAAA+AGG | - | chr1_3:72825659-72825678 | None:intergenic | 35.0% | |
| ATAACTTCCATGATGCATTG+AGG | + | chr1_3:72825714-72825733 | Msa0139250:three_prime_UTR | 35.0% | |
| ! | GAGCTTGGTATTGTTGTTGA+GGG | - | chr1_3:72820889-72820908 | None:intergenic | 40.0% |
| ! | TGAGCTTGGTATTGTTGTTG+AGG | - | chr1_3:72820890-72820909 | None:intergenic | 40.0% |
| GGAAATTGTAAGGTTGAGCT+TGG | - | chr1_3:72820904-72820923 | None:intergenic | 40.0% | |
| !! | TATCTGATGGGTTCAGATTG+AGG | - | chr1_3:72821076-72821095 | None:intergenic | 40.0% |
| AAGTTCTGTTAAGTGGGTGT+TGG | + | chr1_3:72821536-72821555 | Msa0139250:intron | 40.0% | |
| TGGCGTGATTGTCATAATCA+GGG | + | chr1_3:72821750-72821769 | Msa0139250:intron | 40.0% | |
| ! | TCAATGGTGGCTTTTGTTAG+TGG | + | chr1_3:72821969-72821988 | Msa0139250:intron | 40.0% |
| GTGTTGTCAATAACGGTTAG+CGG | - | chr1_3:72822017-72822036 | None:intergenic | 40.0% | |
| CGTTATTGACAACACCGAAT+AGG | + | chr1_3:72822022-72822041 | Msa0139250:intron | 40.0% | |
| !! | CGAGAAGCACTAATAAGCTT+GGG | + | chr1_3:72822185-72822204 | Msa0139250:intron | 40.0% |
| AAGCACTAATAAGCTTGGGT+GGG | + | chr1_3:72822189-72822208 | Msa0139250:intron | 40.0% | |
| !!! | GTATCGGGTGGTTTTTTAAG+GGG | - | chr1_3:72822271-72822290 | None:intergenic | 40.0% |
| ! | TTGGTTTCTTTTGTATCGGG+TGG | - | chr1_3:72822283-72822302 | None:intergenic | 40.0% |
| GTAAGCACATGAAGACATGT+GGG | - | chr1_3:72822381-72822400 | None:intergenic | 40.0% | |
| CAACACCGAATAGGACAATA+TGG | + | chr1_3:72822031-72822050 | Msa0139250:intron | 40.0% | |
| CTTCTAATATTGCAGGCTGT+TGG | + | chr1_3:72822890-72822909 | Msa0139250:intron | 40.0% | |
| ACATGGCCACCACAAATTTA+TGG | + | chr1_3:72822968-72822987 | Msa0139250:CDS | 40.0% | |
| TCGTTGCCATAAATTTGTGG+TGG | - | chr1_3:72822977-72822996 | None:intergenic | 40.0% | |
| GTCTCGTTGCCATAAATTTG+TGG | - | chr1_3:72822980-72822999 | None:intergenic | 40.0% | |
| !! | TTGGTGACATTGGTTTGGTT+AGG | - | chr1_3:72823016-72823035 | None:intergenic | 40.0% |
| ! | AAGCTTTGGTGACATTGGTT+TGG | - | chr1_3:72823021-72823040 | None:intergenic | 40.0% |
| ! | TCTCAAAGCTTTGGTGACAT+TGG | - | chr1_3:72823026-72823045 | None:intergenic | 40.0% |
| CACTTCACATCTCAAAGCTT+TGG | - | chr1_3:72823035-72823054 | None:intergenic | 40.0% | |
| ! | ATCAACCTGTTTCTTAGGCT+CGG | - | chr1_3:72823230-72823249 | None:intergenic | 40.0% |
| ! | GCAGAATCAACCTGTTTCTT+AGG | - | chr1_3:72823235-72823254 | None:intergenic | 40.0% |
| !! | GAAACAGGTTGATTCTGCAA+CGG | + | chr1_3:72823237-72823256 | Msa0139250:CDS | 40.0% |
| TAGCTGGTTATGTGCATGTT+TGG | + | chr1_3:72823716-72823735 | Msa0139250:intron | 40.0% | |
| ATCCACTGCGAAAAAGTTAC+TGG | + | chr1_3:72823871-72823890 | Msa0139250:intron | 40.0% | |
| !!! | TTCCAGTAACTTTTTCGCAG+TGG | - | chr1_3:72823876-72823895 | None:intergenic | 40.0% |
| TGAAGACAGGCTATAAATGG+AGG | + | chr1_3:72823918-72823937 | Msa0139250:intron | 40.0% | |
| GAAGACAGGCTATAAATGGA+GGG | + | chr1_3:72823919-72823938 | Msa0139250:intron | 40.0% | |
| !!! | GCTATAAATGGAGGGCATTT+TGG | + | chr1_3:72823927-72823946 | Msa0139250:intron | 40.0% |
| CCATGTCATAGTCAAATTGC+TGG | - | chr1_3:72823994-72824013 | None:intergenic | 40.0% | |
| CCAGCAATTTGACTATGACA+TGG | + | chr1_3:72823991-72824010 | Msa0139250:intron | 40.0% | |
| TATACCTCTGTAGTTAGCAG+AGG | - | chr1_3:72824123-72824142 | None:intergenic | 40.0% | |
| AGAAAATGCAGCTCCAAAAG+GGG | - | chr1_3:72824316-72824335 | None:intergenic | 40.0% | |
| CAGAAAATGCAGCTCCAAAA+GGG | - | chr1_3:72824317-72824336 | None:intergenic | 40.0% | |
| TCAGAAAATGCAGCTCCAAA+AGG | - | chr1_3:72824318-72824337 | None:intergenic | 40.0% | |
| CGATCTTTCTTGAAAGCTGT+AGG | + | chr1_3:72824382-72824401 | Msa0139250:intron | 40.0% | |
| TTCCTGTATGGCCGTATATA+AGG | - | chr1_3:72824731-72824750 | None:intergenic | 40.0% | |
| GAGTGCTATCATTTCCTGTA+TGG | - | chr1_3:72824743-72824762 | None:intergenic | 40.0% | |
| CTTTACCCTATTGAACTGCA+AGG | + | chr1_3:72824952-72824971 | Msa0139250:intron | 40.0% | |
| TTACGCCTTGCAGTTCAATA+GGG | - | chr1_3:72824960-72824979 | None:intergenic | 40.0% | |
| TTTACGCCTTGCAGTTCAAT+AGG | - | chr1_3:72824961-72824980 | None:intergenic | 40.0% | |
| AACCTACGAGTCACAAAAAG+TGG | - | chr1_3:72825011-72825030 | None:intergenic | 40.0% | |
| GCTTGAATTCGGCAATAGAT+GGG | - | chr1_3:72825060-72825079 | None:intergenic | 40.0% | |
| ATTGCCGAATTCAAGCGTAA+CGG | + | chr1_3:72825064-72825083 | Msa0139250:CDS | 40.0% | |
| AACACCGTTACGCTTGAATT+CGG | - | chr1_3:72825071-72825090 | None:intergenic | 40.0% | |
| ! | CTGAGCAACCTTGATTTTCT+TGG | - | chr1_3:72825113-72825132 | None:intergenic | 40.0% |
| ! | TAAAGTATTTGTTGCGGAGG+CGG | - | chr1_3:72825275-72825294 | None:intergenic | 40.0% |
| CGATCAACCAAAACCAAAGA+AGG | + | chr1_3:72825321-72825340 | Msa0139250:CDS | 40.0% | |
| !! | TCTGATGCCTTCTTTGGTTT+TGG | - | chr1_3:72825331-72825350 | None:intergenic | 40.0% |
| ! | TCAAGTTCTGATGCCTTCTT+TGG | - | chr1_3:72825337-72825356 | None:intergenic | 40.0% |
| TCTCATCTAGACTTGAAGAC+AGG | + | chr1_3:72825563-72825582 | Msa0139250:three_prime_UTR | 40.0% | |
| CTCATCTAGACTTGAAGACA+GGG | + | chr1_3:72825564-72825583 | Msa0139250:three_prime_UTR | 40.0% | |
| TTGCAAACCTCAATGCATCA+TGG | - | chr1_3:72825724-72825743 | None:intergenic | 40.0% | |
| TCAAAAGGGGGTGGAAAATG+AGG | - | chr1_3:72820793-72820812 | None:intergenic | 45.0% | |
| ACTTGTGAATCAAAAGGGGG+TGG | - | chr1_3:72820802-72820821 | None:intergenic | 45.0% | |
| ! | AGGGTTGTTGTTGTTGTTGC+TGG | - | chr1_3:72820925-72820944 | None:intergenic | 45.0% |
| GAGGATGAAGTGAAGGATCA+GGG | - | chr1_3:72820961-72820980 | None:intergenic | 45.0% | |
| GAGGTGTAAAGAGAAACAGG+AGG | - | chr1_3:72821022-72821041 | None:intergenic | 45.0% | |
| ! | TGGGAGGTGTAAAGAGAAAC+AGG | - | chr1_3:72821025-72821044 | None:intergenic | 45.0% |
| ! | GTGATAATCTGTTGGTTGGG+AGG | - | chr1_3:72821041-72821060 | None:intergenic | 45.0% |
| ATGGAATGATACCGCGATTG+TGG | + | chr1_3:72821635-72821654 | Msa0139250:intron | 45.0% | |
| TGGAATGATACCGCGATTGT+GGG | + | chr1_3:72821636-72821655 | Msa0139250:intron | 45.0% | |
| ATGACAATCACCCACAATCG+CGG | - | chr1_3:72821649-72821668 | None:intergenic | 45.0% | |
| ATGGAACGATACCGCAATTC+TGG | + | chr1_3:72821730-72821749 | Msa0139250:intron | 45.0% | |
| TGACAATCACGCCAGAATTG+CGG | - | chr1_3:72821744-72821763 | None:intergenic | 45.0% | |
| CTGGCGTGATTGTCATAATC+AGG | + | chr1_3:72821749-72821768 | Msa0139250:intron | 45.0% | |
| TGTAGCGACAATCGCAGTAT+CGG | - | chr1_3:72821789-72821808 | None:intergenic | 45.0% | |
| CTTATTAGTGCTTCTCGCAC+GGG | - | chr1_3:72822182-72822201 | None:intergenic | 45.0% | |
| GCTTATTAGTGCTTCTCGCA+CGG | - | chr1_3:72822183-72822202 | None:intergenic | 45.0% | |
| !! | GCGAGAAGCACTAATAAGCT+TGG | + | chr1_3:72822184-72822203 | Msa0139250:intron | 45.0% |
| ! | GAAGCACTAATAAGCTTGGG+TGG | + | chr1_3:72822188-72822207 | Msa0139250:intron | 45.0% |
| TTGATCGAGCCACGTTTGTA+CGG | - | chr1_3:72822245-72822264 | None:intergenic | 45.0% | |
| CAAACCCAAGAGTAATGACG+CGG | + | chr1_3:72822300-72822319 | Msa0139250:intron | 45.0% | |
| AAACCCAAGAGTAATGACGC+GGG | + | chr1_3:72822301-72822320 | Msa0139250:intron | 45.0% | |
| ATTCCCGCGTCATTACTCTT+GGG | - | chr1_3:72822307-72822326 | None:intergenic | 45.0% | |
| TATTCCCGCGTCATTACTCT+TGG | - | chr1_3:72822308-72822327 | None:intergenic | 45.0% | |
| GGTAAGCACATGAAGACATG+TGG | - | chr1_3:72822382-72822401 | None:intergenic | 45.0% | |
| ATGACTGTGAGTGTTTCACG+TGG | + | chr1_3:72822590-72822609 | Msa0139250:intron | 45.0% | |
| AGTTTACCTTCTGCGTGGAA+TGG | + | chr1_3:72822944-72822963 | Msa0139250:CDS | 45.0% | |
| GTGATCCTATCTTGCCTTGT+GGG | - | chr1_3:72823619-72823638 | None:intergenic | 45.0% | |
| AGTGATCCTATCTTGCCTTG+TGG | - | chr1_3:72823620-72823639 | None:intergenic | 45.0% | |
| AAGGCAAGATAGGATCACTG+TGG | + | chr1_3:72823621-72823640 | Msa0139250:intron | 45.0% | |
| AGGCAAGATAGGATCACTGT+GGG | + | chr1_3:72823622-72823641 | Msa0139250:intron | 45.0% | |
| GGGTTGCCAAAATCACTTTG+TGG | - | chr1_3:72823792-72823811 | None:intergenic | 45.0% | |
| ! | GTTCTTCTGGAGATGAAGAC+AGG | + | chr1_3:72823905-72823924 | Msa0139250:intron | 45.0% |
| GCTAGACACTACTGAAATCG+AGG | - | chr1_3:72824062-72824081 | None:intergenic | 45.0% | |
| !! | CTGTAGCGGATATAATGTCG+TGG | - | chr1_3:72824100-72824119 | None:intergenic | 45.0% |
| GACCTTATATACGGCCATAC+AGG | + | chr1_3:72824726-72824745 | Msa0139250:intron | 45.0% | |
| AAAACCAGTGTTGCCAATCG+TGG | - | chr1_3:72824808-72824827 | None:intergenic | 45.0% | |
| GAGCAACTTGGGGAAAATGT+AGG | - | chr1_3:72824919-72824938 | None:intergenic | 45.0% | |
| !!! | GACCACTTTTTGTGACTCGT+AGG | + | chr1_3:72825006-72825025 | Msa0139250:intron | 45.0% |
| CGCTTGAATTCGGCAATAGA+TGG | - | chr1_3:72825061-72825080 | None:intergenic | 45.0% | |
| GAATTCAAGCGTAACGGTGT+TGG | + | chr1_3:72825070-72825089 | Msa0139250:CDS | 45.0% | |
| !!! | CTAGTGCCGACATCGATTTT+TGG | - | chr1_3:72825241-72825260 | None:intergenic | 45.0% |
| ! | CAGCATGTTTCTGACCAACA+AGG | - | chr1_3:72825471-72825490 | None:intergenic | 45.0% |
| TGGTCAGAAACATGCTGCTA+TGG | + | chr1_3:72825474-72825493 | Msa0139250:CDS | 45.0% | |
| ACATGCTGCTATGGTGAAGA+AGG | + | chr1_3:72825483-72825502 | Msa0139250:CDS | 45.0% | |
| TATGGTGAAGAAGGCAGGAT+CGG | + | chr1_3:72825492-72825511 | Msa0139250:CDS | 45.0% | |
| !! | AAAAAAAAATTTAACAAATT+GGG | - | chr1_3:72820744-72820763 | None:intergenic | 5.0% |
| !! | AAAAAAAAAATTTAACAAAT+TGG | - | chr1_3:72820745-72820764 | None:intergenic | 5.0% |
| GGAGGATGAAGTGAAGGATC+AGG | - | chr1_3:72820962-72820981 | None:intergenic | 50.0% | |
| GATCCTTCACTTCATCCTCC+TGG | + | chr1_3:72820962-72820981 | Msa0139250:CDS | 50.0% | |
| GATTGTCGCTACAGCAAACG+AGG | + | chr1_3:72821796-72821815 | Msa0139250:intron | 50.0% | |
| AATCGGTTGCCGTACAAACG+TGG | + | chr1_3:72822233-72822252 | Msa0139250:intron | 50.0% | |
| CGCGTCATTACTCTTGGGTT+TGG | - | chr1_3:72822302-72822321 | None:intergenic | 50.0% | |
| !!! | GGTTTTTGGTGTTGACGCTG+GGG | - | chr1_3:72822354-72822373 | None:intergenic | 50.0% |
| !!! | CGGTTTTTGGTGTTGACGCT+GGG | - | chr1_3:72822355-72822374 | None:intergenic | 50.0% |
| ACATGAAGACATGTGGGTGG+CGG | - | chr1_3:72822375-72822394 | None:intergenic | 50.0% | |
| AGCACATGAAGACATGTGGG+TGG | - | chr1_3:72822378-72822397 | None:intergenic | 50.0% | |
| GACGCTTCTGACTTTCACTC+TGG | + | chr1_3:72822853-72822872 | Msa0139250:intron | 50.0% | |
| CACGCAGAAGGTAAACTTGC+AGG | - | chr1_3:72822941-72822960 | None:intergenic | 50.0% | |
| CTGCAAGTTTACCTTCTGCG+TGG | + | chr1_3:72822939-72822958 | Msa0139250:CDS | 50.0% | |
| CATGTACCATTCCACGCAGA+AGG | - | chr1_3:72822953-72822972 | None:intergenic | 50.0% | |
| CTTCTGCGTGGAATGGTACA+TGG | + | chr1_3:72822951-72822970 | Msa0139250:CDS | 50.0% | |
| AGGCTCGGATTGCTTGACTA+CGG | - | chr1_3:72823215-72823234 | None:intergenic | 50.0% | |
| GCAATCCGAGCCTAAGAAAC+AGG | + | chr1_3:72823222-72823241 | Msa0139250:CDS | 50.0% | |
| TTGGACCCACAAGGCAAGAT+AGG | + | chr1_3:72823611-72823630 | Msa0139250:intron | 50.0% | |
| !! | ATGTGCATGTTTGGTGTCGC+TGG | + | chr1_3:72823725-72823744 | Msa0139250:intron | 50.0% |
| !! | TGTGCATGTTTGGTGTCGCT+GGG | + | chr1_3:72823726-72823745 | Msa0139250:intron | 50.0% |
| !! | GTGATTTTGGCAACCCACCA+TGG | + | chr1_3:72823796-72823815 | Msa0139250:intron | 50.0% |
| GTTGCAACGTTGACCACCAT+GGG | + | chr1_3:72824013-72824032 | Msa0139250:intron | 50.0% | |
| AATGTCGTGGCGTGTCATAG+CGG | - | chr1_3:72824087-72824106 | None:intergenic | 50.0% | |
| GTAGTTAGCAGAGGCTGTAG+CGG | - | chr1_3:72824114-72824133 | None:intergenic | 50.0% | |
| ACAGCCTCTGCTAACTACAG+AGG | + | chr1_3:72824116-72824135 | Msa0139250:intron | 50.0% | |
| TCAAGGTTGCTCAGTCTGCA+TGG | + | chr1_3:72825119-72825138 | Msa0139250:CDS | 50.0% | |
| !! | TCGGTACCTGGCTTTTCTTG+TGG | - | chr1_3:72825304-72825323 | None:intergenic | 50.0% |
| !!! | GGTTTTGGTTGATCGGTACC+TGG | - | chr1_3:72825316-72825335 | None:intergenic | 50.0% |
| GTGCCAGGAGGATGAAGTGA+AGG | - | chr1_3:72820968-72820987 | None:intergenic | 55.0% | |
| TTTGCAAGTGGGTCAGTGCC+AGG | - | chr1_3:72820983-72821002 | None:intergenic | 55.0% | |
| TGTCGCTACAGCAAACGAGG+TGG | + | chr1_3:72821799-72821818 | Msa0139250:intron | 55.0% | |
| TTGACGCTGGGGTATGCATG+TGG | - | chr1_3:72822343-72822362 | None:intergenic | 55.0% | |
| !!! | GCGGTTTTTGGTGTTGACGC+TGG | - | chr1_3:72822356-72822375 | None:intergenic | 55.0% |
| !! | GACATGTGGGTGGCGGTTTT+TGG | - | chr1_3:72822368-72822387 | None:intergenic | 55.0% |
| GGCTCGGATTGCTTGACTAC+GGG | - | chr1_3:72823214-72823233 | None:intergenic | 55.0% | |
| ! | TGGGAGAAAGCATGCTGCTC+AGG | + | chr1_3:72823318-72823337 | Msa0139250:CDS | 55.0% |
| GGTTGCAACGTTGACCACCA+TGG | + | chr1_3:72824012-72824031 | Msa0139250:intron | 55.0% | |
| ! | TTTTGACGTAGCGCCCATGG+TGG | - | chr1_3:72824029-72824048 | None:intergenic | 55.0% |
| !! | GCATTTTGACGTAGCGCCCA+TGG | - | chr1_3:72824032-72824051 | None:intergenic | 55.0% |
| ! | AAACCATTGCCGGCCCCTTT+TGG | + | chr1_3:72824300-72824319 | Msa0139250:intron | 55.0% |
| AATGCAGCTCCAAAAGGGGC+CGG | - | chr1_3:72824312-72824331 | None:intergenic | 55.0% | |
| AGATCGTACAAGCCTGTCGC+AGG | - | chr1_3:72824368-72824387 | None:intergenic | 55.0% | |
| CGATCCACGATTGGCAACAC+TGG | + | chr1_3:72824801-72824820 | Msa0139250:intron | 55.0% | |
| ! | AGTATTTGTTGCGGAGGCGG+TGG | - | chr1_3:72825272-72825291 | None:intergenic | 55.0% |
| ATCGGGCCACAAGAAAAGCC+AGG | + | chr1_3:72825295-72825314 | Msa0139250:CDS | 55.0% | |
| GAAGGAGGAGCTGCAGTTGA+TGG | + | chr1_3:72825385-72825404 | Msa0139250:CDS | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | + | chr1_3:72825487-72825506 | Msa0139250:CDS | 55.0% | |
| AAGAAGGCAGGATCGGTCAC+TGG | + | chr1_3:72825499-72825518 | Msa0139250:CDS | 55.0% | |
| ! | CGGTCACTGGTTGAGCTGAT+CGG | + | chr1_3:72825512-72825531 | Msa0139250:exon | 55.0% |
| TGGTTGAGCTGATCGGTCAC+TGG | + | chr1_3:72825519-72825538 | Msa0139250:exon | 55.0% | |
| ! | AGCTGATCGGTCACTGGTTG+AGG | + | chr1_3:72825525-72825544 | Msa0139250:exon | 55.0% |
| ATACCGTGCACACCTGCGAC+AGG | + | chr1_3:72824353-72824372 | Msa0139250:intron | 60.0% | |
| AAGCCTGTCGCAGGTGTGCA+CGG | - | chr1_3:72824359-72824378 | None:intergenic | 60.0% | |
| GCAAGTGGGTCAGTGCCAGG+AGG | - | chr1_3:72820980-72820999 | None:intergenic | 65.0% | |
| GTGCTTCTCGCACGGGCTTG+TGG | - | chr1_3:72822175-72822194 | None:intergenic | 65.0% | |
| GCTCCAAAAGGGGCCGGCAA+TGG | - | chr1_3:72824306-72824325 | None:intergenic | 65.0% | |
| TGTTGCGGAGGCGGTGGAAG+TGG | - | chr1_3:72825266-72825285 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 72820708 | 72825795 | 72820708 | ID=Msa0139250;Name=Msa0139250 |
| chr1_3 | mRNA | 72820708 | 72825795 | 72820708 | ID=Msa0139250-mRNA-1;Parent=Msa0139250;Name=Msa0139250-mRNA-1;_AED=0.16;_eAED=0.16;_QI=173|1|1|1|1|1|3|270|384 |
| chr1_3 | exon | 72820708 | 72821102 | 72820708 | ID=Msa0139250-mRNA-1:exon:25346;Parent=Msa0139250-mRNA-1 |
| chr1_3 | exon | 72822905 | 72823339 | 72822905 | ID=Msa0139250-mRNA-1:exon:25347;Parent=Msa0139250-mRNA-1 |
| chr1_3 | exon | 72825028 | 72825795 | 72825028 | ID=Msa0139250-mRNA-1:exon:25348;Parent=Msa0139250-mRNA-1 |
| chr1_3 | five_prime_UTR | 72820708 | 72820880 | 72820708 | ID=Msa0139250-mRNA-1:five_prime_utr;Parent=Msa0139250-mRNA-1 |
| chr1_3 | CDS | 72820881 | 72821102 | 72820881 | ID=Msa0139250-mRNA-1:cds;Parent=Msa0139250-mRNA-1 |
| chr1_3 | CDS | 72822905 | 72823339 | 72822905 | ID=Msa0139250-mRNA-1:cds;Parent=Msa0139250-mRNA-1 |
| chr1_3 | CDS | 72825028 | 72825525 | 72825028 | ID=Msa0139250-mRNA-1:cds;Parent=Msa0139250-mRNA-1 |
| chr1_3 | three_prime_UTR | 72825526 | 72825795 | 72825526 | ID=Msa0139250-mRNA-1:three_prime_utr;Parent=Msa0139250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
