AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140940 MtrunA17_Chr3g0125321 99.209 253 1 1 1 252 1 253 0.0 516
Msa0140940 MtrunA17_Chr3g0114411 27.184 206 141 4 34 235 58 258 2.81e-15 73.6
Msa0140940 MtrunA17_Chr7g0259851 25.828 151 108 1 76 226 523 669 1.94e-13 69.7
Msa0140940 MtrunA17_Chr3g0124921 28.571 175 118 3 69 240 151 321 2.01e-13 68.9
Msa0140940 MtrunA17_Chr7g0259501 27.568 185 113 5 73 242 201 379 2.72e-13 68.9
Msa0140940 MtrunA17_Chr1g0185861 27.568 185 113 5 73 242 205 383 6.96e-13 67.8
Msa0140940 MtrunA17_Chr5g0401281 29.605 152 100 3 94 240 79 228 7.31e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140940 AT4G08455.1 65.234 256 78 3 4 248 6 261 5.09e-118 338
Msa0140940 AT3G56230.1 29.592 196 127 5 48 240 86 273 1.12e-19 86.3
Msa0140940 AT1G01640.2 31.902 163 108 2 79 240 3 163 2.71e-19 83.2
Msa0140940 AT1G01640.1 31.902 163 108 2 79 240 24 184 5.34e-19 82.8
Msa0140940 AT4G37610.1 28.634 227 147 6 29 245 5 226 1.85e-14 72.4
Msa0140940 AT3G06190.1 27.717 184 114 4 73 242 196 374 3.59e-13 68.9
Msa0140940 AT1G21780.2 26.455 189 129 4 57 241 139 321 7.46e-12 64.7
Msa0140940 AT1G21780.1 26.455 189 129 4 57 241 139 321 7.46e-12 64.7
Msa0140940 AT3G06190.5 28.485 165 101 3 73 225 196 355 2.04e-11 63.5
Msa0140940 AT5G19330.1 25.153 163 115 2 77 239 539 694 3.73e-11 63.2
Msa0140940 AT2G39760.1 27.922 154 97 2 96 235 207 360 7.49e-11 62.0
Msa0140940 AT2G40450.1 29.213 178 118 3 82 251 26 203 8.14e-11 60.5
Msa0140940 AT3G43700.1 24.457 184 116 4 73 238 199 377 8.56e-11 62.0
Msa0140940 AT2G05330.1 29.487 156 104 2 100 249 34 189 8.80e-11 60.5

Find 113 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTGTGTTGCTTTGGTTGC+TGG 0.177348 1_3:-75624177 Msa0140940:three_prime_UTR
GTGACAACATTGCTGCTTTC+CGG 0.214238 1_3:-75624115 Msa0140940:three_prime_UTR
ATATCACAGCACTTTGATTC+TGG 0.253784 1_3:-75624336 Msa0140940:three_prime_UTR
TCCTAAAACTAATAGGTTAC+AGG 0.263882 1_3:+75624840 None:intergenic
GGGTTATAGGAATGCGGTTT+AGG 0.297273 1_3:-75624547 Msa0140940:exon
TTGCAAGTACCGGCGTCGTC+GGG 0.297670 1_3:+75625627 None:intergenic
ATTTGATCTCCAAACTGAAT+TGG 0.305803 1_3:-75624774 Msa0140940:CDS
TGCAGCCACGCTAGGGTTAT+AGG 0.318170 1_3:-75624560 Msa0140940:exon
TCAAGCATGGCTCTGAAAAC+TGG 0.323355 1_3:+75624982 None:intergenic
GGCAGTGATCATGGAGAATA+TGG 0.334507 1_3:-75624683 Msa0140940:CDS
GCATGGTAGAAACTTAAGTT+TGG 0.349216 1_3:-75624502 Msa0140940:three_prime_UTR
TGTAGATGTGATCAGATAAT+AGG 0.349255 1_3:-75624241 Msa0140940:three_prime_UTR
CTAATAGGTTACAGGCCATT+TGG 0.355315 1_3:+75624848 None:intergenic
CCAATTGCAAGATGCTGCTT+TGG 0.359172 1_3:-75624704 Msa0140940:CDS
GATTGATGATGGATGGATAT+TGG 0.359627 1_3:+75625773 None:intergenic
AGCTTTCTCCCAATTCAGTT+TGG 0.363821 1_3:+75624765 None:intergenic
CTAGAGCAGTTGCCTCTCTA+AGG 0.364167 1_3:-75624392 Msa0140940:three_prime_UTR
CTTCAAAGGCTGTGTTGCTT+TGG 0.367507 1_3:-75624184 Msa0140940:three_prime_UTR
TGAAGCTTATCTTGCCAAAC+AGG 0.369315 1_3:-75624590 Msa0140940:CDS
GTTGAAACAAGATATTAAAA+TGG 0.377055 1_3:+75623931 None:intergenic
CTGACGTTTGAATTCCTCTT+CGG 0.381082 1_3:+75625578 None:intergenic
GTAGTAGTAACAGCAGTATA+TGG 0.382806 1_3:+75624429 None:intergenic
AGACTTTGGATTTGAGGTCT+TGG 0.386775 1_3:+75625553 None:intergenic
GGATGGATATTGGATGGAAA+AGG 0.391799 1_3:+75625783 None:intergenic
GGAAGGAGACTTTGGATTTG+AGG 0.393809 1_3:+75625547 None:intergenic
CCAAAGCAGCATCTTGCAAT+TGG 0.397391 1_3:+75624704 None:intergenic
CATAGGTGGAAACACGAAAC+AGG 0.397964 1_3:+75624020 None:intergenic
CTAGATTTGTTGAGATGTGC+AGG 0.399735 1_3:-75623982 Msa0140940:three_prime_UTR
GGCTGCAGTATTAACCTGTT+TGG 0.400932 1_3:+75624576 None:intergenic
TTTGATCTCCAAACTGAATT+GGG 0.405372 1_3:-75624773 Msa0140940:CDS
TACAGGCCATTTGGTTATCC+AGG 0.408291 1_3:+75624857 None:intergenic
GAGAGTGAGGAAGGAGACTT+TGG 0.418723 1_3:+75625539 None:intergenic
AACGGCCTTGTGAGCGGGAA+TGG 0.421444 1_3:+75625446 None:intergenic
AGCCATGCTTGAGAATGATA+TGG 0.435569 1_3:-75624971 Msa0140940:CDS
TTGCCACCGTCGCGAGTCAC+TGG 0.438948 1_3:-75624148 Msa0140940:three_prime_UTR
GATGGATATTGGATGGAAAA+GGG 0.444139 1_3:+75625784 None:intergenic
ACGACGCAGCAGTGAGGATG+TGG 0.444828 1_3:+75624053 None:intergenic
TGATACATCAGCAATCTTGA+TGG 0.449372 1_3:+75624930 None:intergenic
TGCTGCTTTGGCAGTGATCA+TGG 0.451583 1_3:-75624692 Msa0140940:CDS
GTACACTGCTGAAGCATGCC+TGG 0.466139 1_3:-75624875 Msa0140940:CDS
GTATCAGGTGAAGCATCTTA+AGG 0.470378 1_3:-75624812 Msa0140940:CDS
GTTAATACTGCAGCCACGCT+AGG 0.472280 1_3:-75624568 Msa0140940:CDS
GAATTCCTCTTCGGTTTCGT+TGG 0.472827 1_3:+75625587 None:intergenic
TTCTGTCTTTCGGCGTCACA+CGG 0.483820 1_3:+75625809 None:intergenic
TTTGCAAGTACCGGCGTCGT+CGG 0.487205 1_3:+75625626 None:intergenic
AACTAATCCTCGTTTAGTTG+TGG 0.493649 1_3:-75624620 Msa0140940:CDS
ATCGATGCGATGATTGATGA+TGG 0.496465 1_3:+75625762 None:intergenic
AGCAGCATCTTGCAATTGGT+TGG 0.503680 1_3:+75624708 None:intergenic
TCCTTCCATTCCCGCTCACA+AGG 0.504228 1_3:-75625451 Msa0140940:CDS
CTCCATATCATTCTCAAGCA+TGG 0.507732 1_3:+75624969 None:intergenic
AGGAGAAGCGAGAGTGAGGA+AGG 0.513816 1_3:+75625530 None:intergenic
ACGAGAACGGCCTTGTGAGC+GGG 0.514027 1_3:+75625441 None:intergenic
AGAGACAATCAGAGAAGCAT+AGG 0.516781 1_3:+75624003 None:intergenic
AGTTTGGATTATATTCTTAG+TGG 0.521806 1_3:-75624486 Msa0140940:three_prime_UTR
TGAAGATTACACGGAGTTGG+TGG 0.522112 1_3:-75624644 Msa0140940:CDS
GTAGCATTCTTTGCAAGTAC+CGG 0.522996 1_3:+75625617 None:intergenic
GCCTTGTGAGCGGGAATGGA+AGG 0.523187 1_3:+75625450 None:intergenic
CCCTTGTTATTGAATTCAGA+CGG 0.525616 1_3:-75623909 Msa0140940:three_prime_UTR
AAATGAAGATTACACGGAGT+TGG 0.527013 1_3:-75624647 Msa0140940:CDS
ATTCCATCACTGTACTTCAA+AGG 0.527511 1_3:-75624198 Msa0140940:three_prime_UTR
AAGGAGAACAAGATCGGTGG+TGG 0.529952 1_3:+75625494 None:intergenic
GTTTGGATTATATTCTTAGT+GGG 0.531016 1_3:-75624485 Msa0140940:three_prime_UTR
GACAATCAGAGAAGCATAGG+TGG 0.533675 1_3:+75624006 None:intergenic
GTCGTCGTCGTAATCGCTCT+CGG 0.542273 1_3:+75625695 None:intergenic
GATCTTGTTCTCCTTCCGTC+CGG 0.554395 1_3:-75625486 Msa0140940:CDS
AGCATGCCTGGATAACCAAA+TGG 0.557144 1_3:-75624863 Msa0140940:CDS
GACGCAGCAGTGAGGATGTG+GGG 0.558116 1_3:+75624055 None:intergenic
CGAAGCCAACGAAACCGAAG+AGG 0.562358 1_3:-75625592 Msa0140940:CDS
TACACTGTGCAACGGTGCCG+TGG 0.563730 1_3:+75625720 None:intergenic
AGAAAGTATCACCGGACGGA+AGG 0.567541 1_3:+75625475 None:intergenic
TTAATACTGCAGCCACGCTA+GGG 0.570249 1_3:-75624567 Msa0140940:CDS
AGAATGATATGGAGGAAAGC+CGG 0.570838 1_3:-75624960 Msa0140940:CDS
ATTGTAGTCAACTTTAAGCA+TGG 0.573029 1_3:-75624519 Msa0140940:three_prime_UTR
CAAACACATGGTGCTGCCAC+CGG 0.573154 1_3:+75624096 None:intergenic
CAAGAGGAGAAGCGAGAGTG+AGG 0.574599 1_3:+75625526 None:intergenic
TGCAAGTACCGGCGTCGTCG+GGG 0.582135 1_3:+75625628 None:intergenic
GGCATTGTGTTGATGTGCAA+AGG 0.583175 1_3:+75624729 None:intergenic
TCCGTCTGAATTCAATAACA+AGG 0.583708 1_3:+75623908 None:intergenic
ATGCGATGATTGATGATGGA+TGG 0.583748 1_3:+75625766 None:intergenic
CGACGCAGCAGTGAGGATGT+GGG 0.589210 1_3:+75624054 None:intergenic
CAATCTTGATGGTGCCACTC+CGG 0.589211 1_3:+75624941 None:intergenic
CTCGCAAGAGAGACATCTCA+TGG 0.590091 1_3:+75625662 None:intergenic
AGAACAAGATCGGTGGTGGA+AGG 0.595036 1_3:+75625498 None:intergenic
GGAAGGAGAGAAAGTATCAC+CGG 0.597919 1_3:+75625467 None:intergenic
GTTGCCTCTCTAAGGCATTG+TGG 0.598364 1_3:-75624384 Msa0140940:three_prime_UTR
CAGCCTTTGAAGTACAGTGA+TGG 0.610775 1_3:+75624195 None:intergenic
GATGATGGATGGATATTGGA+TGG 0.615130 1_3:+75625777 None:intergenic
GACGAGAACGGCCTTGTGAG+CGG 0.616158 1_3:+75625440 None:intergenic
CTTAGTGGGTGATTACTCTG+TGG 0.617518 1_3:-75624471 Msa0140940:three_prime_UTR
ACAACATTGCTGCTTTCCGG+TGG 0.622831 1_3:-75624112 Msa0140940:three_prime_UTR
GATTACGACCCCGACGACGC+CGG 0.624267 1_3:-75625636 Msa0140940:CDS
GGACGGAAGGAGAACAAGAT+CGG 0.626611 1_3:+75625488 None:intergenic
CATGAGATGTCTCTCTTGCG+AGG 0.633418 1_3:-75625661 Msa0140940:CDS
ATAGGTGGAAACACGAAACA+GGG 0.640177 1_3:+75624021 None:intergenic
AGGGAGGGTACTGACGAGAA+CGG 0.641189 1_3:+75625428 None:intergenic
ACGCAGCAGTGAGGATGTGG+GGG 0.645645 1_3:+75624056 None:intergenic
CATGCTTGAGAATGATATGG+AGG 0.646700 1_3:-75624968 Msa0140940:CDS
CCGTCTGAATTCAATAACAA+GGG 0.649404 1_3:+75623909 None:intergenic
GAACCAGTGACTCGCGACGG+TGG 0.657483 1_3:+75624145 None:intergenic
TAATCCACAATGCCTTAGAG+AGG 0.657957 1_3:+75624380 None:intergenic
ACGCTAGGGTTATAGGAATG+CGG 0.661484 1_3:-75624553 Msa0140940:exon
GGAGAGAAAGTATCACCGGA+CGG 0.661533 1_3:+75625471 None:intergenic
GTGGTGGAAGGAGCATCAAG+AGG 0.662081 1_3:+75625510 None:intergenic
ATTGAACCAGTGACTCGCGA+CGG 0.672868 1_3:+75624142 None:intergenic
TATATTTCCACAACTAAACG+AGG 0.674137 1_3:+75624613 None:intergenic
TCTCGGAGTACACTGTGCAA+CGG 0.678301 1_3:+75625712 None:intergenic
AACAATCAGATAGAATGCCA+CGG 0.686225 1_3:-75625737 Msa0140940:exon
GATATGGAGGAAAGCCGGAG+TGG 0.686483 1_3:-75624955 Msa0140940:CDS
CGGAAGGAGAACAAGATCGG+TGG 0.688815 1_3:+75625491 None:intergenic
ATTAGAACACAGAAATCACA+AGG 0.707643 1_3:+75624357 None:intergenic
AAAATAGTGACACAAACACA+TGG 0.718502 1_3:+75624084 None:intergenic
GACATCACGACGCAGCAGTG+AGG 0.720527 1_3:+75624047 None:intergenic
GCATTCCTATAACCCTAGCG+TGG 0.731788 1_3:+75624555 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAAAAGTATGAACAT+TGG - chr1_3:75625438-75625457 Msa0140940:intron 15.0%
!!! ATAAAAAAAAGTATGAACAT+TGG - chr1_3:75625438-75625457 Msa0140940:intron 15.0%
!! TTAAAGTAATAATAACCATG+TGG - chr1_3:75624415-75624434 Msa0140940:three_prime_UTR 20.0%
!! ACTTTAAATTAAATCATCAG+TGG + chr1_3:75624645-75624664 None:intergenic 20.0%
!! GTTGAAACAAGATATTAAAA+TGG + chr1_3:75625818-75625837 None:intergenic 20.0%
!! TTAAAGTAATAATAACCATG+TGG - chr1_3:75624415-75624434 Msa0140940:three_prime_UTR 20.0%
!! ACTTTAAATTAAATCATCAG+TGG + chr1_3:75624645-75624664 None:intergenic 20.0%
!! GTTGAAACAAGATATTAAAA+TGG + chr1_3:75625818-75625837 None:intergenic 20.0%
! TTGAAGTGGTTAATGAATTT+CGG - chr1_3:75624443-75624462 Msa0140940:three_prime_UTR 25.0%
! GATAAGCAATACATTATAGA+AGG + chr1_3:75624562-75624581 None:intergenic 25.0%
!!! GCTTTAAAATCATTGAGTAA+GGG + chr1_3:75624678-75624697 None:intergenic 25.0%
!!! AGCTTTAAAATCATTGAGTA+AGG + chr1_3:75624679-75624698 None:intergenic 25.0%
!! ACTTTTCTCCTAAAACTAAT+AGG + chr1_3:75624916-75624935 None:intergenic 25.0%
!!! TGTAATCTTCATTTTTAGTG+AGG + chr1_3:75625093-75625112 None:intergenic 25.0%
! CACTAAAAATGAAGATTACA+CGG - chr1_3:75625093-75625112 Msa0140940:intron 25.0%
! AGTTTGGATTATATTCTTAG+TGG - chr1_3:75625260-75625279 Msa0140940:intron 25.0%
! GTTTGGATTATATTCTTAGT+GGG - chr1_3:75625261-75625280 Msa0140940:intron 25.0%
!! AAAGTATACACCTGTTTTAT+AGG - chr1_3:75625466-75625485 Msa0140940:CDS 25.0%
!! AAGTATACACCTGTTTTATA+GGG - chr1_3:75625467-75625486 Msa0140940:CDS 25.0%
!!! CATACACTTTTTCCATTTTA+TGG + chr1_3:75623899-75623918 None:intergenic 25.0%
! TTGAAGTGGTTAATGAATTT+CGG - chr1_3:75624443-75624462 Msa0140940:three_prime_UTR 25.0%
! GATAAGCAATACATTATAGA+AGG + chr1_3:75624562-75624581 None:intergenic 25.0%
!!! GCTTTAAAATCATTGAGTAA+GGG + chr1_3:75624678-75624697 None:intergenic 25.0%
!!! AGCTTTAAAATCATTGAGTA+AGG + chr1_3:75624679-75624698 None:intergenic 25.0%
!! ACTTTTCTCCTAAAACTAAT+AGG + chr1_3:75624916-75624935 None:intergenic 25.0%
!!! TGTAATCTTCATTTTTAGTG+AGG + chr1_3:75625093-75625112 None:intergenic 25.0%
! CACTAAAAATGAAGATTACA+CGG - chr1_3:75625093-75625112 Msa0140940:intron 25.0%
! AGTTTGGATTATATTCTTAG+TGG - chr1_3:75625260-75625279 Msa0140940:intron 25.0%
! GTTTGGATTATATTCTTAGT+GGG - chr1_3:75625261-75625280 Msa0140940:intron 25.0%
!! AAAGTATACACCTGTTTTAT+AGG - chr1_3:75625466-75625485 Msa0140940:CDS 25.0%
!! AAGTATACACCTGTTTTATA+GGG - chr1_3:75625467-75625486 Msa0140940:CDS 25.0%
AAAAAAAGTGAAGAGAGAGA+GGG + chr1_3:75624340-75624359 None:intergenic 30.0%
AAAAAAAAGTGAAGAGAGAG+AGG + chr1_3:75624341-75624360 None:intergenic 30.0%
GTAATAATAACCATGTGGTT+AGG - chr1_3:75624420-75624439 Msa0140940:three_prime_UTR 30.0%
TGAATTTCGGTTAAGAGTTA+AGG - chr1_3:75624456-75624475 Msa0140940:three_prime_UTR 30.0%
TATCTTGTCCACAATCAAAA+TGG - chr1_3:75624578-75624597 Msa0140940:CDS 30.0%
ATCTTGTCCACAATCAAAAT+GGG - chr1_3:75624579-75624598 Msa0140940:CDS 30.0%
!!! TTATACTCCCATTTTGATTG+TGG + chr1_3:75624589-75624608 None:intergenic 30.0%
TCCTAAAACTAATAGGTTAC+AGG + chr1_3:75624909-75624928 None:intergenic 30.0%
!!! AGTTTTAGGAGAAAAGTATC+AGG - chr1_3:75624919-75624938 Msa0140940:CDS 30.0%
ATTTGATCTCCAAACTGAAT+TGG - chr1_3:75624972-75624991 Msa0140940:CDS 30.0%
TTTGATCTCCAAACTGAATT+GGG - chr1_3:75624973-75624992 Msa0140940:CDS 30.0%
TATATTTCCACAACTAAACG+AGG + chr1_3:75625136-75625155 None:intergenic 30.0%
ATTGTAGTCAACTTTAAGCA+TGG - chr1_3:75625227-75625246 Msa0140940:intron 30.0%
ATTAGAACACAGAAATCACA+AGG + chr1_3:75625392-75625411 None:intergenic 30.0%
! TTTTATCGTCCCTATAAAAC+AGG + chr1_3:75625479-75625498 None:intergenic 30.0%
TGTAGATGTGATCAGATAAT+AGG - chr1_3:75625505-75625524 Msa0140940:CDS 30.0%
AAAATAGTGACACAAACACA+TGG + chr1_3:75625665-75625684 None:intergenic 30.0%
!! TAAGGTTTTATGTTCACTGT+CGG - chr1_3:75625790-75625809 Msa0140940:five_prime_UTR 30.0%
AAAAAAAGTGAAGAGAGAGA+GGG + chr1_3:75624340-75624359 None:intergenic 30.0%
AAAAAAAAGTGAAGAGAGAG+AGG + chr1_3:75624341-75624360 None:intergenic 30.0%
GTAATAATAACCATGTGGTT+AGG - chr1_3:75624420-75624439 Msa0140940:three_prime_UTR 30.0%
TGAATTTCGGTTAAGAGTTA+AGG - chr1_3:75624456-75624475 Msa0140940:three_prime_UTR 30.0%
TATCTTGTCCACAATCAAAA+TGG - chr1_3:75624578-75624597 Msa0140940:CDS 30.0%
ATCTTGTCCACAATCAAAAT+GGG - chr1_3:75624579-75624598 Msa0140940:CDS 30.0%
!!! TTATACTCCCATTTTGATTG+TGG + chr1_3:75624589-75624608 None:intergenic 30.0%
TCCTAAAACTAATAGGTTAC+AGG + chr1_3:75624909-75624928 None:intergenic 30.0%
!!! AGTTTTAGGAGAAAAGTATC+AGG - chr1_3:75624919-75624938 Msa0140940:CDS 30.0%
ATTTGATCTCCAAACTGAAT+TGG - chr1_3:75624972-75624991 Msa0140940:CDS 30.0%
TTTGATCTCCAAACTGAATT+GGG - chr1_3:75624973-75624992 Msa0140940:CDS 30.0%
TATATTTCCACAACTAAACG+AGG + chr1_3:75625136-75625155 None:intergenic 30.0%
ATTGTAGTCAACTTTAAGCA+TGG - chr1_3:75625227-75625246 Msa0140940:intron 30.0%
ATTAGAACACAGAAATCACA+AGG + chr1_3:75625392-75625411 None:intergenic 30.0%
! TTTTATCGTCCCTATAAAAC+AGG + chr1_3:75625479-75625498 None:intergenic 30.0%
TGTAGATGTGATCAGATAAT+AGG - chr1_3:75625505-75625524 Msa0140940:CDS 30.0%
AAAATAGTGACACAAACACA+TGG + chr1_3:75625665-75625684 None:intergenic 30.0%
!! TAAGGTTTTATGTTCACTGT+CGG - chr1_3:75625790-75625809 Msa0140940:five_prime_UTR 30.0%
! GAAAAGGGTTTTCTGTCTTT+CGG + chr1_3:75623950-75623969 None:intergenic 35.0%
GATGGATATTGGATGGAAAA+GGG + chr1_3:75623965-75623984 None:intergenic 35.0%
!! GATTGATGATGGATGGATAT+TGG + chr1_3:75623976-75623995 None:intergenic 35.0%
AACAATCAGATAGAATGCCA+CGG - chr1_3:75624009-75624028 Msa0140940:three_prime_UTR 35.0%
! CATATTCAAGTTCCTAGCAT+GGG + chr1_3:75624501-75624520 None:intergenic 35.0%
! ACATATTCAAGTTCCTAGCA+TGG + chr1_3:75624502-75624521 None:intergenic 35.0%
! GGGAGTATAATGCTGTATAA+TGG - chr1_3:75624599-75624618 Msa0140940:CDS 35.0%
TGATACATCAGCAATCTTGA+TGG + chr1_3:75624819-75624838 None:intergenic 35.0%
!!! GCCTGTAACCTATTAGTTTT+AGG - chr1_3:75624905-75624924 Msa0140940:CDS 35.0%
AAATGAAGATTACACGGAGT+TGG - chr1_3:75625099-75625118 Msa0140940:intron 35.0%
AACTAATCCTCGTTTAGTTG+TGG - chr1_3:75625126-75625145 Msa0140940:intron 35.0%
GCATGGTAGAAACTTAAGTT+TGG - chr1_3:75625244-75625263 Msa0140940:intron 35.0%
GTAGTAGTAACAGCAGTATA+TGG + chr1_3:75625320-75625339 None:intergenic 35.0%
ATATCACAGCACTTTGATTC+TGG - chr1_3:75625410-75625429 Msa0140940:intron 35.0%
ATTCCATCACTGTACTTCAA+AGG - chr1_3:75625548-75625567 Msa0140940:CDS 35.0%
CCGTCTGAATTCAATAACAA+GGG + chr1_3:75625840-75625859 None:intergenic 35.0%
!! CCCTTGTTATTGAATTCAGA+CGG - chr1_3:75625837-75625856 Msa0140940:five_prime_UTR 35.0%
TCCGTCTGAATTCAATAACA+AGG + chr1_3:75625841-75625860 None:intergenic 35.0%
! GAAAAGGGTTTTCTGTCTTT+CGG + chr1_3:75623950-75623969 None:intergenic 35.0%
GATGGATATTGGATGGAAAA+GGG + chr1_3:75623965-75623984 None:intergenic 35.0%
!! GATTGATGATGGATGGATAT+TGG + chr1_3:75623976-75623995 None:intergenic 35.0%
AACAATCAGATAGAATGCCA+CGG - chr1_3:75624009-75624028 Msa0140940:three_prime_UTR 35.0%
! CATATTCAAGTTCCTAGCAT+GGG + chr1_3:75624501-75624520 None:intergenic 35.0%
! ACATATTCAAGTTCCTAGCA+TGG + chr1_3:75624502-75624521 None:intergenic 35.0%
! GGGAGTATAATGCTGTATAA+TGG - chr1_3:75624599-75624618 Msa0140940:CDS 35.0%
TGATACATCAGCAATCTTGA+TGG + chr1_3:75624819-75624838 None:intergenic 35.0%
!!! GCCTGTAACCTATTAGTTTT+AGG - chr1_3:75624905-75624924 Msa0140940:CDS 35.0%
AAATGAAGATTACACGGAGT+TGG - chr1_3:75625099-75625118 Msa0140940:intron 35.0%
AACTAATCCTCGTTTAGTTG+TGG - chr1_3:75625126-75625145 Msa0140940:intron 35.0%
GCATGGTAGAAACTTAAGTT+TGG - chr1_3:75625244-75625263 Msa0140940:intron 35.0%
GTAGTAGTAACAGCAGTATA+TGG + chr1_3:75625320-75625339 None:intergenic 35.0%
ATATCACAGCACTTTGATTC+TGG - chr1_3:75625410-75625429 Msa0140940:intron 35.0%
ATTCCATCACTGTACTTCAA+AGG - chr1_3:75625548-75625567 Msa0140940:CDS 35.0%
CCGTCTGAATTCAATAACAA+GGG + chr1_3:75625840-75625859 None:intergenic 35.0%
!! CCCTTGTTATTGAATTCAGA+CGG - chr1_3:75625837-75625856 Msa0140940:five_prime_UTR 35.0%
TCCGTCTGAATTCAATAACA+AGG + chr1_3:75625841-75625860 None:intergenic 35.0%
GGATGGATATTGGATGGAAA+AGG + chr1_3:75623966-75623985 None:intergenic 40.0%
!! GATGATGGATGGATATTGGA+TGG + chr1_3:75623972-75623991 None:intergenic 40.0%
!! ATGCGATGATTGATGATGGA+TGG + chr1_3:75623983-75624002 None:intergenic 40.0%
ATCGATGCGATGATTGATGA+TGG + chr1_3:75623987-75624006 None:intergenic 40.0%
GTAGCATTCTTTGCAAGTAC+CGG + chr1_3:75624132-75624151 None:intergenic 40.0%
CTGACGTTTGAATTCCTCTT+CGG + chr1_3:75624171-75624190 None:intergenic 40.0%
! AGACTTTGGATTTGAGGTCT+TGG + chr1_3:75624196-75624215 None:intergenic 40.0%
ACATGACGCGATGTTTGAAT+AGG - chr1_3:75624730-75624749 Msa0140940:CDS 40.0%
AGCCATGCTTGAGAATGATA+TGG - chr1_3:75624775-75624794 Msa0140940:CDS 40.0%
CTCCATATCATTCTCAAGCA+TGG + chr1_3:75624780-75624799 None:intergenic 40.0%
CATGCTTGAGAATGATATGG+AGG - chr1_3:75624778-75624797 Msa0140940:CDS 40.0%
AGAATGATATGGAGGAAAGC+CGG - chr1_3:75624786-75624805 Msa0140940:CDS 40.0%
CTAATAGGTTACAGGCCATT+TGG + chr1_3:75624901-75624920 None:intergenic 40.0%
! GTATCAGGTGAAGCATCTTA+AGG - chr1_3:75624934-75624953 Msa0140940:CDS 40.0%
AGCTTTCTCCCAATTCAGTT+TGG + chr1_3:75624984-75625003 None:intergenic 40.0%
TGAAGCTTATCTTGCCAAAC+AGG - chr1_3:75625156-75625175 Msa0140940:intron 40.0%
TAATCCACAATGCCTTAGAG+AGG + chr1_3:75625369-75625388 None:intergenic 40.0%
ATAGGTGGAAACACGAAACA+GGG + chr1_3:75625728-75625747 None:intergenic 40.0%
! AGAGACAATCAGAGAAGCAT+AGG + chr1_3:75625746-75625765 None:intergenic 40.0%
!! CTAGATTTGTTGAGATGTGC+AGG - chr1_3:75625764-75625783 Msa0140940:five_prime_UTR 40.0%
! GTTGAGATGTGCAGGTTTTA+AGG - chr1_3:75625772-75625791 Msa0140940:five_prime_UTR 40.0%
GGATGGATATTGGATGGAAA+AGG + chr1_3:75623966-75623985 None:intergenic 40.0%
!! GATGATGGATGGATATTGGA+TGG + chr1_3:75623972-75623991 None:intergenic 40.0%
!! ATGCGATGATTGATGATGGA+TGG + chr1_3:75623983-75624002 None:intergenic 40.0%
ATCGATGCGATGATTGATGA+TGG + chr1_3:75623987-75624006 None:intergenic 40.0%
GTAGCATTCTTTGCAAGTAC+CGG + chr1_3:75624132-75624151 None:intergenic 40.0%
CTGACGTTTGAATTCCTCTT+CGG + chr1_3:75624171-75624190 None:intergenic 40.0%
! AGACTTTGGATTTGAGGTCT+TGG + chr1_3:75624196-75624215 None:intergenic 40.0%
ACATGACGCGATGTTTGAAT+AGG - chr1_3:75624730-75624749 Msa0140940:CDS 40.0%
AGCCATGCTTGAGAATGATA+TGG - chr1_3:75624775-75624794 Msa0140940:CDS 40.0%
CTCCATATCATTCTCAAGCA+TGG + chr1_3:75624780-75624799 None:intergenic 40.0%
CATGCTTGAGAATGATATGG+AGG - chr1_3:75624778-75624797 Msa0140940:CDS 40.0%
AGAATGATATGGAGGAAAGC+CGG - chr1_3:75624786-75624805 Msa0140940:CDS 40.0%
CTAATAGGTTACAGGCCATT+TGG + chr1_3:75624901-75624920 None:intergenic 40.0%
! GTATCAGGTGAAGCATCTTA+AGG - chr1_3:75624934-75624953 Msa0140940:CDS 40.0%
AGCTTTCTCCCAATTCAGTT+TGG + chr1_3:75624984-75625003 None:intergenic 40.0%
TGAAGCTTATCTTGCCAAAC+AGG - chr1_3:75625156-75625175 Msa0140940:intron 40.0%
TAATCCACAATGCCTTAGAG+AGG + chr1_3:75625369-75625388 None:intergenic 40.0%
ATAGGTGGAAACACGAAACA+GGG + chr1_3:75625728-75625747 None:intergenic 40.0%
! AGAGACAATCAGAGAAGCAT+AGG + chr1_3:75625746-75625765 None:intergenic 40.0%
!! CTAGATTTGTTGAGATGTGC+AGG - chr1_3:75625764-75625783 Msa0140940:five_prime_UTR 40.0%
! GTTGAGATGTGCAGGTTTTA+AGG - chr1_3:75625772-75625791 Msa0140940:five_prime_UTR 40.0%
GAATTCCTCTTCGGTTTCGT+TGG + chr1_3:75624162-75624181 None:intergenic 45.0%
GGAAGGAGACTTTGGATTTG+AGG + chr1_3:75624202-75624221 None:intergenic 45.0%
!! GGAAGGAGAGAAAGTATCAC+CGG + chr1_3:75624282-75624301 None:intergenic 45.0%
AAAGTGAAGAGAGAGAGGGA+GGG + chr1_3:75624336-75624355 None:intergenic 45.0%
AAAAGTGAAGAGAGAGAGGG+AGG + chr1_3:75624337-75624356 None:intergenic 45.0%
!! ACCATGTGGTTAGGTTGAAG+TGG - chr1_3:75624429-75624448 Msa0140940:three_prime_UTR 45.0%
ACCACTTCAACCTAACCACA+TGG + chr1_3:75624433-75624452 None:intergenic 45.0%
!! GTTCTGAAGAATCCCATGCT+AGG - chr1_3:75624486-75624505 Msa0140940:three_prime_UTR 45.0%
!! TCAAGCATGGCTCTGAAAAC+TGG + chr1_3:75624767-75624786 None:intergenic 45.0%
AGCATGCCTGGATAACCAAA+TGG - chr1_3:75624883-75624902 Msa0140940:CDS 45.0%
TACAGGCCATTTGGTTATCC+AGG + chr1_3:75624892-75624911 None:intergenic 45.0%
! GGCATTGTGTTGATGTGCAA+AGG + chr1_3:75625020-75625039 None:intergenic 45.0%
AGCAGCATCTTGCAATTGGT+TGG + chr1_3:75625041-75625060 None:intergenic 45.0%
CCAAAGCAGCATCTTGCAAT+TGG + chr1_3:75625045-75625064 None:intergenic 45.0%
! CCAATTGCAAGATGCTGCTT+TGG - chr1_3:75625042-75625061 Msa0140940:intron 45.0%
GGCAGTGATCATGGAGAATA+TGG - chr1_3:75625063-75625082 Msa0140940:intron 45.0%
TGAAGATTACACGGAGTTGG+TGG - chr1_3:75625102-75625121 Msa0140940:intron 45.0%
GGCTGCAGTATTAACCTGTT+TGG + chr1_3:75625173-75625192 None:intergenic 45.0%
TTAATACTGCAGCCACGCTA+GGG - chr1_3:75625179-75625198 Msa0140940:intron 45.0%
ACGCTAGGGTTATAGGAATG+CGG - chr1_3:75625193-75625212 Msa0140940:intron 45.0%
GGGTTATAGGAATGCGGTTT+AGG - chr1_3:75625199-75625218 Msa0140940:intron 45.0%
! CTTAGTGGGTGATTACTCTG+TGG - chr1_3:75625275-75625294 Msa0140940:intron 45.0%
!! CAGCCTTTGAAGTACAGTGA+TGG + chr1_3:75625554-75625573 None:intergenic 45.0%
!! CTTCAAAGGCTGTGTTGCTT+TGG - chr1_3:75625562-75625581 Msa0140940:CDS 45.0%
!! GTGACAACATTGCTGCTTTC+CGG - chr1_3:75625631-75625650 Msa0140940:CDS 45.0%
CATAGGTGGAAACACGAAAC+AGG + chr1_3:75625729-75625748 None:intergenic 45.0%
! GACAATCAGAGAAGCATAGG+TGG + chr1_3:75625743-75625762 None:intergenic 45.0%
GAATTCCTCTTCGGTTTCGT+TGG + chr1_3:75624162-75624181 None:intergenic 45.0%
GGAAGGAGACTTTGGATTTG+AGG + chr1_3:75624202-75624221 None:intergenic 45.0%
!! GGAAGGAGAGAAAGTATCAC+CGG + chr1_3:75624282-75624301 None:intergenic 45.0%
AAAGTGAAGAGAGAGAGGGA+GGG + chr1_3:75624336-75624355 None:intergenic 45.0%
AAAAGTGAAGAGAGAGAGGG+AGG + chr1_3:75624337-75624356 None:intergenic 45.0%
!! ACCATGTGGTTAGGTTGAAG+TGG - chr1_3:75624429-75624448 Msa0140940:three_prime_UTR 45.0%
ACCACTTCAACCTAACCACA+TGG + chr1_3:75624433-75624452 None:intergenic 45.0%
!! GTTCTGAAGAATCCCATGCT+AGG - chr1_3:75624486-75624505 Msa0140940:three_prime_UTR 45.0%
!! TCAAGCATGGCTCTGAAAAC+TGG + chr1_3:75624767-75624786 None:intergenic 45.0%
AGCATGCCTGGATAACCAAA+TGG - chr1_3:75624883-75624902 Msa0140940:CDS 45.0%
TACAGGCCATTTGGTTATCC+AGG + chr1_3:75624892-75624911 None:intergenic 45.0%
! GGCATTGTGTTGATGTGCAA+AGG + chr1_3:75625020-75625039 None:intergenic 45.0%
AGCAGCATCTTGCAATTGGT+TGG + chr1_3:75625041-75625060 None:intergenic 45.0%
CCAAAGCAGCATCTTGCAAT+TGG + chr1_3:75625045-75625064 None:intergenic 45.0%
! CCAATTGCAAGATGCTGCTT+TGG - chr1_3:75625042-75625061 Msa0140940:intron 45.0%
GGCAGTGATCATGGAGAATA+TGG - chr1_3:75625063-75625082 Msa0140940:intron 45.0%
TGAAGATTACACGGAGTTGG+TGG - chr1_3:75625102-75625121 Msa0140940:intron 45.0%
GGCTGCAGTATTAACCTGTT+TGG + chr1_3:75625173-75625192 None:intergenic 45.0%
TTAATACTGCAGCCACGCTA+GGG - chr1_3:75625179-75625198 Msa0140940:intron 45.0%
ACGCTAGGGTTATAGGAATG+CGG - chr1_3:75625193-75625212 Msa0140940:intron 45.0%
GGGTTATAGGAATGCGGTTT+AGG - chr1_3:75625199-75625218 Msa0140940:intron 45.0%
! CTTAGTGGGTGATTACTCTG+TGG - chr1_3:75625275-75625294 Msa0140940:intron 45.0%
!! CAGCCTTTGAAGTACAGTGA+TGG + chr1_3:75625554-75625573 None:intergenic 45.0%
!! CTTCAAAGGCTGTGTTGCTT+TGG - chr1_3:75625562-75625581 Msa0140940:CDS 45.0%
!! GTGACAACATTGCTGCTTTC+CGG - chr1_3:75625631-75625650 Msa0140940:CDS 45.0%
CATAGGTGGAAACACGAAAC+AGG + chr1_3:75625729-75625748 None:intergenic 45.0%
! GACAATCAGAGAAGCATAGG+TGG + chr1_3:75625743-75625762 None:intergenic 45.0%
TTCTGTCTTTCGGCGTCACA+CGG + chr1_3:75623940-75623959 None:intergenic 50.0%
TCTCGGAGTACACTGTGCAA+CGG + chr1_3:75624037-75624056 None:intergenic 50.0%
CTCGCAAGAGAGACATCTCA+TGG + chr1_3:75624087-75624106 None:intergenic 50.0%
CATGAGATGTCTCTCTTGCG+AGG - chr1_3:75624085-75624104 Msa0140940:three_prime_UTR 50.0%
GAGAGTGAGGAAGGAGACTT+TGG + chr1_3:75624210-75624229 None:intergenic 50.0%
!! AGAACAAGATCGGTGGTGGA+AGG + chr1_3:75624251-75624270 None:intergenic 50.0%
AAGGAGAACAAGATCGGTGG+TGG + chr1_3:75624255-75624274 None:intergenic 50.0%
GGACGGAAGGAGAACAAGAT+CGG + chr1_3:75624261-75624280 None:intergenic 50.0%
GATCTTGTTCTCCTTCCGTC+CGG - chr1_3:75624260-75624279 Msa0140940:three_prime_UTR 50.0%
!! AGAAAGTATCACCGGACGGA+AGG + chr1_3:75624274-75624293 None:intergenic 50.0%
!! GGAGAGAAAGTATCACCGGA+CGG + chr1_3:75624278-75624297 None:intergenic 50.0%
!! CAATCTTGATGGTGCCACTC+CGG + chr1_3:75624808-75624827 None:intergenic 50.0%
!! TGCTGCTTTGGCAGTGATCA+TGG - chr1_3:75625054-75625073 Msa0140940:intron 50.0%
GTTAATACTGCAGCCACGCT+AGG - chr1_3:75625178-75625197 Msa0140940:intron 50.0%
GCATTCCTATAACCCTAGCG+TGG + chr1_3:75625194-75625213 None:intergenic 50.0%
CTAGAGCAGTTGCCTCTCTA+AGG - chr1_3:75625354-75625373 Msa0140940:intron 50.0%
!! GTTGCCTCTCTAAGGCATTG+TGG - chr1_3:75625362-75625381 Msa0140940:intron 50.0%
ATTGAACCAGTGACTCGCGA+CGG + chr1_3:75625607-75625626 None:intergenic 50.0%
!! ACAACATTGCTGCTTTCCGG+TGG - chr1_3:75625634-75625653 Msa0140940:CDS 50.0%
TTCTGTCTTTCGGCGTCACA+CGG + chr1_3:75623940-75623959 None:intergenic 50.0%
TCTCGGAGTACACTGTGCAA+CGG + chr1_3:75624037-75624056 None:intergenic 50.0%
CTCGCAAGAGAGACATCTCA+TGG + chr1_3:75624087-75624106 None:intergenic 50.0%
CATGAGATGTCTCTCTTGCG+AGG - chr1_3:75624085-75624104 Msa0140940:three_prime_UTR 50.0%
GAGAGTGAGGAAGGAGACTT+TGG + chr1_3:75624210-75624229 None:intergenic 50.0%
!! AGAACAAGATCGGTGGTGGA+AGG + chr1_3:75624251-75624270 None:intergenic 50.0%
AAGGAGAACAAGATCGGTGG+TGG + chr1_3:75624255-75624274 None:intergenic 50.0%
GGACGGAAGGAGAACAAGAT+CGG + chr1_3:75624261-75624280 None:intergenic 50.0%
GATCTTGTTCTCCTTCCGTC+CGG - chr1_3:75624260-75624279 Msa0140940:three_prime_UTR 50.0%
!! AGAAAGTATCACCGGACGGA+AGG + chr1_3:75624274-75624293 None:intergenic 50.0%
!! GGAGAGAAAGTATCACCGGA+CGG + chr1_3:75624278-75624297 None:intergenic 50.0%
!! CAATCTTGATGGTGCCACTC+CGG + chr1_3:75624808-75624827 None:intergenic 50.0%
!! TGCTGCTTTGGCAGTGATCA+TGG - chr1_3:75625054-75625073 Msa0140940:intron 50.0%
GTTAATACTGCAGCCACGCT+AGG - chr1_3:75625178-75625197 Msa0140940:intron 50.0%
GCATTCCTATAACCCTAGCG+TGG + chr1_3:75625194-75625213 None:intergenic 50.0%
CTAGAGCAGTTGCCTCTCTA+AGG - chr1_3:75625354-75625373 Msa0140940:intron 50.0%
!! GTTGCCTCTCTAAGGCATTG+TGG - chr1_3:75625362-75625381 Msa0140940:intron 50.0%
ATTGAACCAGTGACTCGCGA+CGG + chr1_3:75625607-75625626 None:intergenic 50.0%
!! ACAACATTGCTGCTTTCCGG+TGG - chr1_3:75625634-75625653 Msa0140940:CDS 50.0%
GTCGTCGTCGTAATCGCTCT+CGG + chr1_3:75624054-75624073 None:intergenic 55.0%
!! TTTGCAAGTACCGGCGTCGT+CGG + chr1_3:75624123-75624142 None:intergenic 55.0%
CGAAGCCAACGAAACCGAAG+AGG - chr1_3:75624154-75624173 Msa0140940:three_prime_UTR 55.0%
AGGAGAAGCGAGAGTGAGGA+AGG + chr1_3:75624219-75624238 None:intergenic 55.0%
CAAGAGGAGAAGCGAGAGTG+AGG + chr1_3:75624223-75624242 None:intergenic 55.0%
!! GTGGTGGAAGGAGCATCAAG+AGG + chr1_3:75624239-75624258 None:intergenic 55.0%
CGGAAGGAGAACAAGATCGG+TGG + chr1_3:75624258-75624277 None:intergenic 55.0%
TCCTTCCATTCCCGCTCACA+AGG - chr1_3:75624295-75624314 Msa0140940:three_prime_UTR 55.0%
!! AGGGAGGGTACTGACGAGAA+CGG + chr1_3:75624321-75624340 None:intergenic 55.0%
GATATGGAGGAAAGCCGGAG+TGG - chr1_3:75624791-75624810 Msa0140940:CDS 55.0%
GTACACTGCTGAAGCATGCC+TGG - chr1_3:75624871-75624890 Msa0140940:CDS 55.0%
TGCAGCCACGCTAGGGTTAT+AGG - chr1_3:75625186-75625205 Msa0140940:intron 55.0%
!! GGCTGTGTTGCTTTGGTTGC+TGG - chr1_3:75625569-75625588 Msa0140940:CDS 55.0%
!! CAAACACATGGTGCTGCCAC+CGG + chr1_3:75625653-75625672 None:intergenic 55.0%
GTCGTCGTCGTAATCGCTCT+CGG + chr1_3:75624054-75624073 None:intergenic 55.0%
!! TTTGCAAGTACCGGCGTCGT+CGG + chr1_3:75624123-75624142 None:intergenic 55.0%
CGAAGCCAACGAAACCGAAG+AGG - chr1_3:75624154-75624173 Msa0140940:three_prime_UTR 55.0%
AGGAGAAGCGAGAGTGAGGA+AGG + chr1_3:75624219-75624238 None:intergenic 55.0%
CAAGAGGAGAAGCGAGAGTG+AGG + chr1_3:75624223-75624242 None:intergenic 55.0%
!! GTGGTGGAAGGAGCATCAAG+AGG + chr1_3:75624239-75624258 None:intergenic 55.0%
CGGAAGGAGAACAAGATCGG+TGG + chr1_3:75624258-75624277 None:intergenic 55.0%
TCCTTCCATTCCCGCTCACA+AGG - chr1_3:75624295-75624314 Msa0140940:three_prime_UTR 55.0%
!! AGGGAGGGTACTGACGAGAA+CGG + chr1_3:75624321-75624340 None:intergenic 55.0%
GATATGGAGGAAAGCCGGAG+TGG - chr1_3:75624791-75624810 Msa0140940:CDS 55.0%
GTACACTGCTGAAGCATGCC+TGG - chr1_3:75624871-75624890 Msa0140940:CDS 55.0%
TGCAGCCACGCTAGGGTTAT+AGG - chr1_3:75625186-75625205 Msa0140940:intron 55.0%
!! GGCTGTGTTGCTTTGGTTGC+TGG - chr1_3:75625569-75625588 Msa0140940:CDS 55.0%
!! CAAACACATGGTGCTGCCAC+CGG + chr1_3:75625653-75625672 None:intergenic 55.0%
! TACACTGTGCAACGGTGCCG+TGG + chr1_3:75624029-75624048 None:intergenic 60.0%
!! TTGCAAGTACCGGCGTCGTC+GGG + chr1_3:75624122-75624141 None:intergenic 60.0%
GCCTTGTGAGCGGGAATGGA+AGG + chr1_3:75624299-75624318 None:intergenic 60.0%
! AACGGCCTTGTGAGCGGGAA+TGG + chr1_3:75624303-75624322 None:intergenic 60.0%
! ACGAGAACGGCCTTGTGAGC+GGG + chr1_3:75624308-75624327 None:intergenic 60.0%
! GACGAGAACGGCCTTGTGAG+CGG + chr1_3:75624309-75624328 None:intergenic 60.0%
ACGCAGCAGTGAGGATGTGG+GGG + chr1_3:75625693-75625712 None:intergenic 60.0%
GACGCAGCAGTGAGGATGTG+GGG + chr1_3:75625694-75625713 None:intergenic 60.0%
CGACGCAGCAGTGAGGATGT+GGG + chr1_3:75625695-75625714 None:intergenic 60.0%
ACGACGCAGCAGTGAGGATG+TGG + chr1_3:75625696-75625715 None:intergenic 60.0%
GACATCACGACGCAGCAGTG+AGG + chr1_3:75625702-75625721 None:intergenic 60.0%
! TACACTGTGCAACGGTGCCG+TGG + chr1_3:75624029-75624048 None:intergenic 60.0%
!! TTGCAAGTACCGGCGTCGTC+GGG + chr1_3:75624122-75624141 None:intergenic 60.0%
GCCTTGTGAGCGGGAATGGA+AGG + chr1_3:75624299-75624318 None:intergenic 60.0%
! AACGGCCTTGTGAGCGGGAA+TGG + chr1_3:75624303-75624322 None:intergenic 60.0%
! ACGAGAACGGCCTTGTGAGC+GGG + chr1_3:75624308-75624327 None:intergenic 60.0%
! GACGAGAACGGCCTTGTGAG+CGG + chr1_3:75624309-75624328 None:intergenic 60.0%
ACGCAGCAGTGAGGATGTGG+GGG + chr1_3:75625693-75625712 None:intergenic 60.0%
GACGCAGCAGTGAGGATGTG+GGG + chr1_3:75625694-75625713 None:intergenic 60.0%
CGACGCAGCAGTGAGGATGT+GGG + chr1_3:75625695-75625714 None:intergenic 60.0%
ACGACGCAGCAGTGAGGATG+TGG + chr1_3:75625696-75625715 None:intergenic 60.0%
GACATCACGACGCAGCAGTG+AGG + chr1_3:75625702-75625721 None:intergenic 60.0%
GATTACGACCCCGACGACGC+CGG - chr1_3:75624110-75624129 Msa0140940:three_prime_UTR 65.0%
!! TGCAAGTACCGGCGTCGTCG+GGG + chr1_3:75624121-75624140 None:intergenic 65.0%
TTGCCACCGTCGCGAGTCAC+TGG - chr1_3:75625598-75625617 Msa0140940:CDS 65.0%
GAACCAGTGACTCGCGACGG+TGG + chr1_3:75625604-75625623 None:intergenic 65.0%
GATTACGACCCCGACGACGC+CGG - chr1_3:75624110-75624129 Msa0140940:three_prime_UTR 65.0%
!! TGCAAGTACCGGCGTCGTCG+GGG + chr1_3:75624121-75624140 None:intergenic 65.0%
TTGCCACCGTCGCGAGTCAC+TGG - chr1_3:75625598-75625617 Msa0140940:CDS 65.0%
GAACCAGTGACTCGCGACGG+TGG + chr1_3:75625604-75625623 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 75623898 75625870 75623898 ID=Msa0140940;Name=Msa0140940
chr1_3 mRNA 75623898 75625870 75623898 ID=Msa0140940-mRNA-1;Parent=Msa0140940;Name=Msa0140940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=125|1|1|1|1|1|2|663|252
chr1_3 exon 75623898 75625016 75623898 ID=Msa0140940-mRNA-1:exon:26387;Parent=Msa0140940-mRNA-1
chr1_3 exon 75625443 75625870 75625443 ID=Msa0140940-mRNA-1:exon:26386;Parent=Msa0140940-mRNA-1
chr1_3 five_prime_UTR 75625746 75625870 75625746 ID=Msa0140940-mRNA-1:five_prime_utr;Parent=Msa0140940-mRNA-1
chr1_3 CDS 75625443 75625745 75625443 ID=Msa0140940-mRNA-1:cds;Parent=Msa0140940-mRNA-1
chr1_3 CDS 75624561 75625016 75624561 ID=Msa0140940-mRNA-1:cds;Parent=Msa0140940-mRNA-1
chr1_3 three_prime_UTR 75623898 75624560 75623898 ID=Msa0140940-mRNA-1:three_prime_utr;Parent=Msa0140940-mRNA-1
Gene Sequence

>Msa0140940

ATGCCACGGCACCGTTGCACAGTGTACTCCGAGAGCGATTACGACGACGACGATAACGTCACCATGAGATGTCTCTCTTGCGAGGACGATTACGACCCCGACGACGCCGGTACTTGCAAAGAATGCTACGACGAAGCCAACGAAACCGAAGAGGAATTCAAACGTCAGATCCAAGACCTCAAATCCAAAGTCTCCTTCCTCACTCTCGCTTCTCCTCTTGATGCTCCTTCCACCACCGATCTTGTTCTCCTTCCGTCCGGTGATACTTTCTCTCCTTCCATTCCCGCTCACAAGGCCGTTCTCGTTAGTCGCTCTCCAGTTTTCAGAGCCATGCTTGAGAATGATATGGAGGAAAGCCGGAGTGGCACCATCAAGATTGCTGATGTATCATACGATGCTCTTCGTGCTTTTGTTAACTACTTGTACACTGCTGAAGCATGCCTGGATAACCAAATGGCCTGTAACCTATTAGTTTTAGGAGAAAAGTATCAGGTGAAGCATCTTAAGGCATATTGTGAGAAGTATTTGATCTCCAAACTGAATTGGGAGAAAGCTATTGTCAACTTTGCCTTTGCACATCAACACAATGCCAACCAATTGCAAGATGCTGCTTTGGCAGTGATCATGGAGAATATGGACAACCTCACTAAAAATGAAGATTACACGGAGTTGGTGGAAACTAATCCTCGTTTAGTTGTGGAAATATATGAAGCTTATCTTGCCAAACAGGTTAATACTGCAGCCACGCTAGGGTTATAG
Protein sequence

>Msa0140940

MPRHRCTVYSESDYDDDDNVTMRCLSCEDDYDPDDAGTCKECYDEANETEEEFKRQIQDLKSKVSFLTLASPLDAPSTTDLVLLPSGDTFSPSIPAHKAVLVSRSPVFRAMLENDMEESRSGTIKIADVSYDALRAFVNYLYTAEACLDNQMACNLLVLGEKYQVKHLKAYCEKYLISKLNWEKAIVNFAFAHQHNANQLQDAALAVIMENMDNLTKNEDYTELVETNPRLVVEIYEAYLAKQVNTAATLGL*