AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142030 MtrunA17_Chr4g0010151 97.808 365 5 3 1 363 1 364 0.0 718
Msa0142030 MtrunA17_Chr7g0237921 50.131 383 126 14 1 359 1 342 1.69e-89 273
Msa0142030 MtrunA17_Chr4g0031411 43.478 345 142 13 1 322 1 315 1.47e-67 216
Msa0142030 MtrunA17_Chr2g0328021 38.226 327 103 16 1 307 1 248 3.29e-49 167
Msa0142030 MtrunA17_Chr7g0223311 37.403 385 189 15 1 353 1 365 8.77e-47 163
Msa0142030 MtrunA17_Chr3g0127201 69.737 76 19 1 62 137 12 83 3.23e-32 122
Msa0142030 MtrunA17_Chr4g0047001 52.459 122 52 2 82 199 56 175 1.90e-31 122
Msa0142030 MtrunA17_Chr2g0326001 80.328 61 12 0 75 135 34 94 3.40e-31 119
Msa0142030 MtrunA17_Chr8g0346551 45.324 139 65 3 68 204 11 140 4.41e-31 119
Msa0142030 MtrunA17_Chr8g0374251 51.351 111 49 2 81 187 68 177 5.68e-30 117
Msa0142030 MtrunA17_Chr5g0411951 81.818 55 10 0 77 131 39 93 2.35e-29 115
Msa0142030 MtrunA17_Chr8g0341671 75.000 68 15 2 73 139 13 79 3.84e-29 112
Msa0142030 MtrunA17_Chr3g0117601 63.855 83 27 2 49 131 32 111 4.64e-29 115
Msa0142030 MtrunA17_Chr4g0030051 81.356 59 10 1 75 133 36 93 4.73e-29 114
Msa0142030 MtrunA17_Chr3g0126201 64.865 74 26 0 62 135 32 105 5.03e-29 114
Msa0142030 MtrunA17_Chr8g0367161 69.841 63 19 0 78 140 29 91 1.43e-28 113
Msa0142030 MtrunA17_Chr8g0374111 54.255 94 32 2 60 152 17 100 1.48e-28 110
Msa0142030 MtrunA17_Chr2g0282511 86.275 51 7 0 80 130 44 94 2.08e-28 112
Msa0142030 MtrunA17_Chr1g0177251 56.250 96 36 1 83 178 14 103 2.00e-27 109
Msa0142030 MtrunA17_Chr2g0308011 86.000 50 7 0 80 129 36 85 2.83e-27 107
Msa0142030 MtrunA17_Chr1g0188851 55.000 80 34 1 58 135 18 97 7.95e-27 107
Msa0142030 MtrunA17_Chr4g0061761 80.769 52 10 0 80 131 39 90 8.70e-27 108
Msa0142030 MtrunA17_Chr2g0282441 66.667 72 19 2 61 132 10 76 2.12e-26 107
Msa0142030 MtrunA17_Chr8g0355261 68.333 60 19 0 77 136 114 173 5.15e-26 108
Msa0142030 MtrunA17_Chr4g0047761 74.138 58 14 1 81 138 72 128 1.26e-25 105
Msa0142030 MtrunA17_Chr6g0453321 67.213 61 20 0 77 137 132 192 1.60e-25 107
Msa0142030 MtrunA17_Chr2g0282051 71.930 57 15 1 79 135 44 99 1.64e-25 103
Msa0142030 MtrunA17_Chr2g0283811 70.175 57 17 0 78 134 44 100 3.98e-25 99.8
Msa0142030 MtrunA17_Chr6g0460721 62.903 62 23 0 74 135 82 143 5.26e-25 103
Msa0142030 MtrunA17_Chr4g0042481 65.079 63 22 0 77 139 118 180 9.29e-25 104
Msa0142030 MtrunA17_Chr7g0217581 62.500 64 24 0 74 137 225 288 1.90e-24 104
Msa0142030 MtrunA17_Chr5g0417571 45.833 96 49 1 42 137 102 194 2.15e-24 102
Msa0142030 MtrunA17_Chr7g0254161 62.295 61 23 0 74 134 94 154 2.52e-24 103
Msa0142030 MtrunA17_Chr3g0092111 63.492 63 23 0 77 139 132 194 3.27e-24 103
Msa0142030 MtrunA17_Chr6g0460731 60.656 61 24 0 74 134 89 149 4.47e-24 101
Msa0142030 MtrunA17_Chr5g0417551 37.692 130 75 1 12 141 64 187 6.74e-23 98.6
Msa0142030 MtrunA17_Chr5g0417561 48.235 85 44 0 57 141 95 179 3.49e-22 96.3
Msa0142030 MtrunA17_Chr5g0417601 42.424 99 54 1 39 134 95 193 4.16e-22 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142030 AT3G55370.2 38.421 380 177 14 1 350 1 353 7.72e-58 192
Msa0142030 AT3G55370.1 43.972 282 124 10 1 275 1 255 1.07e-57 190
Msa0142030 AT2G37590.1 41.284 327 151 9 1 308 1 305 2.04e-50 172
Msa0142030 AT3G55370.3 47.280 239 92 11 44 275 89 300 8.97e-50 171
Msa0142030 AT5G02460.1 40.160 376 137 14 1 312 1 352 7.34e-48 167
Msa0142030 AT2G28810.1 34.865 370 174 16 1 342 1 331 3.61e-38 140
Msa0142030 AT1G07640.3 50.694 144 64 3 5 141 2 145 4.32e-37 137
Msa0142030 AT1G07640.2 57.983 119 40 3 28 141 24 137 1.01e-36 135
Msa0142030 AT5G60200.1 57.407 108 45 1 77 183 51 158 1.54e-36 133
Msa0142030 AT1G07640.1 70.886 79 23 0 63 141 3 81 2.92e-36 133
Msa0142030 AT2G28810.2 35.088 342 162 13 23 342 11 314 7.51e-36 133
Msa0142030 AT3G45610.1 55.238 105 44 2 77 180 36 138 4.03e-34 126
Msa0142030 AT1G51700.1 60.000 95 34 3 76 166 27 121 8.21e-31 116
Msa0142030 AT5G65590.1 42.045 176 68 4 41 193 8 172 1.30e-30 119
Msa0142030 AT1G28310.1 79.310 58 12 0 81 138 27 84 3.25e-30 117
Msa0142030 AT2G28510.1 81.967 61 11 0 80 140 47 107 3.44e-30 117
Msa0142030 AT1G28310.2 79.310 58 12 0 81 138 51 108 4.76e-30 118
Msa0142030 AT5G60850.1 71.014 69 20 0 68 136 38 106 1.56e-29 115
Msa0142030 AT3G61850.2 75.410 61 15 0 77 137 58 118 5.89e-29 114
Msa0142030 AT3G61850.3 75.410 61 15 0 77 137 58 118 5.89e-29 114
Msa0142030 AT3G61850.1 75.410 61 15 0 77 137 70 130 7.07e-29 114
Msa0142030 AT3G21270.1 84.906 53 8 0 81 133 29 81 7.31e-29 111
Msa0142030 AT3G61850.5 75.410 61 15 0 77 137 58 118 9.34e-29 114
Msa0142030 AT3G61850.4 75.410 61 15 0 77 137 70 130 1.04e-28 114
Msa0142030 AT3G52440.1 58.140 86 36 0 78 163 22 107 3.48e-28 110
Msa0142030 AT4G38000.1 73.438 64 16 1 75 137 35 98 3.73e-28 110
Msa0142030 AT4G24060.1 73.770 61 16 0 75 135 47 107 5.58e-28 112
Msa0142030 AT3G52440.2 58.140 86 36 0 78 163 41 126 6.09e-28 110
Msa0142030 AT5G66940.1 48.958 96 38 2 62 146 2 97 3.72e-27 107
Msa0142030 AT1G21340.1 68.750 64 20 0 79 142 36 99 7.74e-27 107
Msa0142030 AT5G62940.1 86.000 50 7 0 82 131 74 123 1.55e-26 108
Msa0142030 AT2G34140.1 51.685 89 40 1 46 134 26 111 2.16e-26 103
Msa0142030 AT3G50410.1 69.492 59 18 0 81 139 30 88 2.75e-26 105
Msa0142030 AT4G00940.1 71.186 59 17 0 77 135 64 122 4.89e-26 106
Msa0142030 AT4G00940.3 71.186 59 17 0 77 135 64 122 4.89e-26 106
Msa0142030 AT4G00940.2 71.186 59 17 0 77 135 64 122 4.89e-26 106
Msa0142030 AT2G46590.1 78.846 52 11 0 77 128 64 115 1.79e-25 105
Msa0142030 AT2G46590.2 78.846 52 11 0 77 128 76 127 2.09e-25 105
Msa0142030 AT4G21050.1 66.129 62 21 0 74 135 17 78 4.46e-25 101
Msa0142030 AT1G29160.1 68.966 58 18 0 77 134 58 115 4.83e-25 100
Msa0142030 AT3G47500.1 67.213 61 20 0 77 137 106 166 9.82e-25 105
Msa0142030 AT1G64620.1 74.545 55 14 0 75 129 43 97 1.18e-24 103
Msa0142030 AT1G26790.1 55.072 69 31 0 66 134 96 164 3.29e-24 102
Msa0142030 AT1G69570.1 62.295 61 23 0 74 134 125 185 5.08e-24 102
Msa0142030 AT5G62430.1 58.209 67 28 0 74 140 47 113 1.10e-23 99.8
Msa0142030 AT5G39660.3 62.903 62 23 0 73 134 130 191 1.19e-23 102
Msa0142030 AT5G39660.1 62.903 62 23 0 73 134 130 191 1.19e-23 102
Msa0142030 AT5G39660.2 62.903 62 23 0 73 134 130 191 1.19e-23 102
Msa0142030 AT1G47655.1 68.333 60 17 1 72 129 18 77 1.43e-23 97.4
Msa0142030 AT4G21040.1 50.562 89 40 1 83 171 27 111 3.89e-22 94.0
Msa0142030 AT4G21080.1 47.674 86 41 1 83 168 27 108 8.39e-21 90.9
Msa0142030 AT4G21030.1 55.932 59 23 1 70 128 13 68 2.64e-14 71.2

Find 125 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATATTATCAATATTT+TGG 0.080654 1_4:+813599 Msa0142030:three_prime_UTR
ATCAAGGAAGTGAACAATTT+TGG 0.154411 1_4:+813192 Msa0142030:CDS
GATTTCGTCGGAGGAGATTT+AGG 0.156968 1_4:+812822 Msa0142030:CDS
AATTGGACTGATCATGTTTC+TGG 0.157222 1_4:+813248 Msa0142030:CDS
TCAACTTGCTTCTGTGAAAA+TGG 0.216358 1_4:+813115 Msa0142030:CDS
CCAGAAGTTGAAATCACTTT+TGG 0.251474 1_4:-813083 None:intergenic
GCAAGTCTTGCAGAAGTGTC+TGG 0.259253 1_4:-812529 None:intergenic
CCAAAAGTGATTTCAACTTC+TGG 0.271253 1_4:+813083 Msa0142030:CDS
GGTGATTTGGGAAGTGCTTT+AGG 0.279369 1_4:+812879 Msa0142030:CDS
ATGGGAGGAGTAGGTGATTT+GGG 0.291520 1_4:+812867 Msa0142030:CDS
GAGACTGAGCCGCCGTTTCC+TGG 0.307456 1_4:-812297 None:intergenic
CATGGGAGGAGTAGGTGATT+TGG 0.324852 1_4:+812866 Msa0142030:CDS
AAATGGAAGATAGTATTAAT+AGG 0.328456 1_4:+813132 Msa0142030:CDS
TGGAATAGTGCTGTTGTTAC+TGG 0.330687 1_4:+813212 Msa0142030:CDS
CTGGTAATTCTGCAGCTAAT+TGG 0.337179 1_4:+813231 Msa0142030:CDS
TCTCCTCCGACGAAATCATT+AGG 0.340259 1_4:-812816 None:intergenic
TCCCGGTCGGTGGAGGCTTC+CGG 0.345043 1_4:+812589 Msa0142030:CDS
AATGGAAGATAGTATTAATA+GGG 0.346177 1_4:+813133 Msa0142030:CDS
TGAAGTGAAGCTTATGGTTT+TGG 0.349479 1_4:+813335 Msa0142030:three_prime_UTR
GGACAAGAGGCGGCGCTCTA+AGG 0.351075 1_4:+812562 Msa0142030:CDS
ATTTCGTCGGAGGAGATTTA+GGG 0.356337 1_4:+812823 Msa0142030:CDS
AATTAGCCAGAAAAGGAAAT+TGG 0.359477 1_4:-812977 None:intergenic
TTCCATTCAAAATAGATGAT+TGG 0.362979 1_4:+813393 Msa0142030:three_prime_UTR
CACTCTTCCGCCGATATATT+AGG 0.387275 1_4:+812732 Msa0142030:CDS
GGAGATTTAGGGTTAAACTA+TGG 0.392754 1_4:+812834 Msa0142030:CDS
GCCCTATCGGACATCGATCC+TGG 0.393185 1_4:-812402 None:intergenic
GAATATTTGATTTAACTTGC+TGG 0.396515 1_4:+813625 Msa0142030:three_prime_UTR
TGCTTGATCTCTTGTTTCTC+CGG 0.410783 1_4:-812608 None:intergenic
CTTCAAGTGGTTTGGAGCAA+TGG 0.413375 1_4:+812922 Msa0142030:CDS
TTGAACTAGCACTCCCCGTT+TGG 0.413567 1_4:-812680 None:intergenic
CTCCTCCGACGAAATCATTA+GGG 0.413580 1_4:-812815 None:intergenic
AGAGTGGATATTGTTATTAG+AGG 0.414913 1_4:-812715 None:intergenic
CTTATCTTGATGCAGCCAAC+TGG 0.417162 1_4:+812002 Msa0142030:CDS
GAGGATCCACCGGCTCAATA+AGG 0.418418 1_4:+812379 Msa0142030:CDS
GCAAGCTCTGACCGCCAAAC+GGG 0.420432 1_4:+812666 Msa0142030:CDS
ACACTATAAAATTCTACATC+TGG 0.437923 1_4:-813301 None:intergenic
GGCAAGCTCTGACCGCCAAA+CGG 0.445526 1_4:+812665 Msa0142030:CDS
GTTTGCCATCCTTGCCCTAT+CGG 0.454338 1_4:-812415 None:intergenic
GCAAGACTTGCAGAAGGTAC+TGG 0.454376 1_4:+812541 Msa0142030:CDS
ATGATTGGTCAAGGGATTTG+AGG 0.455775 1_4:+813408 Msa0142030:three_prime_UTR
CTCCGGAAGCCTCCACCGAC+CGG 0.457586 1_4:-812591 None:intergenic
TGCAGCCAACTGGCAGCAAC+AGG 0.457644 1_4:+812012 Msa0142030:CDS
GTTTCTTTGTATGAGAAGGT+TGG 0.458599 1_4:+813538 Msa0142030:three_prime_UTR
AAACTATGGTTTCAGTTACA+TGG 0.461300 1_4:+812848 Msa0142030:CDS
TAATTAACAAGAGGTTATGA+AGG 0.464763 1_4:-811810 None:intergenic
CCCTCCAAATTAGCCAGAAA+AGG 0.471049 1_4:-812984 None:intergenic
TTTGAACATTTCCTTCAAAA+GGG 0.473490 1_4:-813025 None:intergenic
AGGAATGTCCCGGTCGGTGG+AGG 0.474332 1_4:+812582 Msa0142030:CDS
GTGAAGTGAAGTGAAGCTTA+TGG 0.475370 1_4:+813329 Msa0142030:three_prime_UTR
AACTAGCACTCCCCGTTTGG+CGG 0.478302 1_4:-812677 None:intergenic
GTTTGGCGGTCAGAGCTTGC+CGG 0.480338 1_4:-812663 None:intergenic
AGCAACAATAACAGTAATCA+AGG 0.480984 1_4:+813176 Msa0142030:CDS
AGGTGTAAGGCCTAATATAT+CGG 0.483491 1_4:-812742 None:intergenic
AAATAAAATCTAATATCCCT+AGG 0.490213 1_4:-813458 None:intergenic
TGTGACTGTGGTGGTGGTGG+TGG 0.490793 1_4:-812339 None:intergenic
TTAGGTTTCTTTGTATGAGA+AGG 0.493011 1_4:+813534 Msa0142030:three_prime_UTR
CAAGTCTTGCAGAAGTGTCT+GGG 0.504581 1_4:-812528 None:intergenic
GACTGTGACTGTGGTGGTGG+TGG 0.506110 1_4:-812342 None:intergenic
AAAGGCTTAGGAAATAATAG+TGG 0.519603 1_4:-811923 None:intergenic
GGACATTTCAGTGCTGCCTC+CGG 0.520025 1_4:-812447 None:intergenic
TTCAGTGCTGCCTCCGGCAT+AGG 0.523439 1_4:-812441 None:intergenic
TTAGATCAACTGAAAACCCT+AGG 0.525471 1_4:+813441 Msa0142030:three_prime_UTR
CTAAGGAATGTCCCGGTCGG+TGG 0.525935 1_4:+812579 Msa0142030:CDS
GATGGCAAACATGCCTATGC+CGG 0.531496 1_4:+812428 Msa0142030:CDS
CGATCCTGGCCTTATTGAGC+CGG 0.532175 1_4:-812388 None:intergenic
TCAAAATAGATGATTGGTCA+AGG 0.532360 1_4:+813399 Msa0142030:three_prime_UTR
AACTATGGTTTCAGTTACAT+GGG 0.532581 1_4:+812849 Msa0142030:CDS
TTACTGAAGTTATGATGTAA+AGG 0.534579 1_4:-812792 None:intergenic
GCCAGGATCGATGTCCGATA+GGG 0.536618 1_4:+812401 Msa0142030:CDS
ATCAAGATAAGCTGCTGGTA+TGG 0.536728 1_4:-811990 None:intergenic
ATTTACCTGTTGCTGCCAGT+TGG 0.539661 1_4:-812017 None:intergenic
AGAGGTTATGAAGGTTTGAG+AGG 0.542962 1_4:-811801 None:intergenic
CACCTCAAATGTCATCATTG+AGG 0.546296 1_4:+812760 Msa0142030:CDS
CATCATCAACAACCAGGAAA+CGG 0.548372 1_4:+812285 Msa0142030:CDS
TGAGACTGTGACTGTGGTGG+TGG 0.553445 1_4:-812345 None:intergenic
TGGAAACTCAACAAAGTCTC+CGG 0.554123 1_4:+812644 Msa0142030:CDS
TTCAGTTACATGGGAGGAGT+AGG 0.554461 1_4:+812858 Msa0142030:CDS
CAAGTGGTTTGGAGCAATGG+AGG 0.557508 1_4:+812925 Msa0142030:CDS
CCTCATGGAGGAGGATCCAC+CGG 0.558615 1_4:+812369 Msa0142030:CDS
ATGATGACATTTGAGGTGTA+AGG 0.560208 1_4:-812755 None:intergenic
TCCGGAAGCCTCCACCGACC+GGG 0.560245 1_4:-812590 None:intergenic
CAGTCACAGTCTCAACCTCA+TGG 0.560556 1_4:+812354 Msa0142030:CDS
TGTCTATGTGTGTGTTGGTG+AGG 0.567003 1_4:-811864 None:intergenic
TCAAGCAAAAGTAGCAACAA+TGG 0.567762 1_4:+812624 Msa0142030:CDS
TCCTGGCCTTATTGAGCCGG+TGG 0.569726 1_4:-812385 None:intergenic
CAAAATAGATGATTGGTCAA+GGG 0.570096 1_4:+813400 Msa0142030:three_prime_UTR
ACATTGTGAGTTCAAAGGAA+TGG 0.570549 1_4:+813581 Msa0142030:three_prime_UTR
GATGTCCGATAGGGCAAGGA+TGG 0.575021 1_4:+812410 Msa0142030:CDS
AACCTCAATGATGACATTTG+AGG 0.576269 1_4:-812762 None:intergenic
CATGAAATGATAACTAGTGG+TGG 0.580805 1_4:+813050 Msa0142030:CDS
AGTAACCCTAATGATTTCGT+CGG 0.581465 1_4:+812810 Msa0142030:CDS
CTAATATATCGGCGGAAGAG+TGG 0.581651 1_4:-812731 None:intergenic
GGCCAGGATCGATGTCCGAT+AGG 0.581899 1_4:+812400 Msa0142030:CDS
ATGGAAGATAGTATTAATAG+GGG 0.583129 1_4:+813134 Msa0142030:CDS
TCCACCGGCTCAATAAGGCC+AGG 0.583672 1_4:+812384 Msa0142030:CDS
AATAAAATCTAATATCCCTA+GGG 0.584366 1_4:-813457 None:intergenic
GATTTGGGAAGTGCTTTAGG+AGG 0.585086 1_4:+812882 Msa0142030:CDS
CAGTCTCAACCTCATGGAGG+AGG 0.588847 1_4:+812360 Msa0142030:CDS
GCAAGAAAGTAATTAACAAG+AGG 0.590880 1_4:-811819 None:intergenic
CGGCGCTCTAAGGAATGTCC+CGG 0.591050 1_4:+812572 Msa0142030:CDS
TAGTAACATTGTGAGTTCAA+AGG 0.592653 1_4:+813576 Msa0142030:three_prime_UTR
GCTGCATCAAGATAAGCTGC+TGG 0.594629 1_4:-811995 None:intergenic
AACCCTAATGATTTCGTCGG+AGG 0.598673 1_4:+812813 Msa0142030:CDS
TGCAGAAGGTACTGGACAAG+AGG 0.603431 1_4:+812549 Msa0142030:CDS
AATCATGAAATGATAACTAG+TGG 0.606438 1_4:+813047 Msa0142030:CDS
CAGAATCATCATCAACAACC+AGG 0.608698 1_4:+812279 Msa0142030:CDS
TGAGGTTGAGACTGTGACTG+TGG 0.613393 1_4:-812351 None:intergenic
AGAAGGTACTGGACAAGAGG+CGG 0.614306 1_4:+812552 Msa0142030:CDS
GATCGATGTCCGATAGGGCA+AGG 0.614474 1_4:+812406 Msa0142030:CDS
CAAGCTCTGACCGCCAAACG+GGG 0.623809 1_4:+812667 Msa0142030:CDS
GGCAAACATGCCTATGCCGG+AGG 0.625436 1_4:+812431 Msa0142030:CDS
TAGATCAACTGAAAACCCTA+GGG 0.628130 1_4:+813442 Msa0142030:three_prime_UTR
AAGAGTGTCTATGTGTGTGT+TGG 0.630908 1_4:-811869 None:intergenic
AAAATCAAAGAGAGAAAACA+TGG 0.634160 1_4:+811958 Msa0142030:exon
GCTCTAAGGAATGTCCCGGT+CGG 0.641908 1_4:+812576 Msa0142030:CDS
TGTTGATGAGTCATTGACAT+TGG 0.643301 1_4:-812951 None:intergenic
CATCAACAACCAGGAAACGG+CGG 0.668062 1_4:+812288 Msa0142030:CDS
TATGGTTTCAGTTACATGGG+AGG 0.669968 1_4:+812852 Msa0142030:CDS
ACTTCTGCAAGACTTGCAGA+AGG 0.679196 1_4:+812535 Msa0142030:CDS
GGTTGAGACTGTGACTGTGG+TGG 0.680166 1_4:-812348 None:intergenic
CCGGTGGATCCTCCTCCATG+AGG 0.687789 1_4:-812369 None:intergenic
TGTAAGGCCTAATATATCGG+CGG 0.708601 1_4:-812739 None:intergenic
TAACTAGTGGTGGATATGTG+AGG 0.730675 1_4:+813060 Msa0142030:CDS
GTGTTGGTTGATTCACAACG+TGG 0.731087 1_4:-812468 None:intergenic
TCACAGTCTCAACCTCATGG+AGG 0.766876 1_4:+812357 Msa0142030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTCAAAAGATAAAA+AGG + chr1_4:812101-812120 Msa0142030:intron 10.0%
!!! TAATATGTTACTTTTAATAT+AGG + chr1_4:813510-813529 Msa0142030:three_prime_UTR 10.0%
!! AAATAATTCAAAAGATAAAA+AGG + chr1_4:812101-812120 Msa0142030:intron 10.0%
!!! TAATATGTTACTTTTAATAT+AGG + chr1_4:813510-813529 Msa0142030:three_prime_UTR 10.0%
!!! GATTTTTTTTCTTTTGTAAA+AGG - chr1_4:811944-811963 None:intergenic 15.0%
!! TAAGAAAGAAATCAAATATT+TGG - chr1_4:812174-812193 None:intergenic 15.0%
!!! AATGGATATTATCAATATTT+TGG + chr1_4:813599-813618 Msa0142030:three_prime_UTR 15.0%
!!! ATGGATATTATCAATATTTT+GGG + chr1_4:813600-813619 Msa0142030:three_prime_UTR 15.0%
!!! GATTTTTTTTCTTTTGTAAA+AGG - chr1_4:811944-811963 None:intergenic 15.0%
!! TAAGAAAGAAATCAAATATT+TGG - chr1_4:812174-812193 None:intergenic 15.0%
!!! AATGGATATTATCAATATTT+TGG + chr1_4:813599-813618 Msa0142030:three_prime_UTR 15.0%
!!! ATGGATATTATCAATATTTT+GGG + chr1_4:813600-813619 Msa0142030:three_prime_UTR 15.0%
!! ACAGGTAAATATAATTAGTA+AGG + chr1_4:812030-812049 Msa0142030:intron 20.0%
!! CAGGTAAATATAATTAGTAA+GGG + chr1_4:812031-812050 Msa0142030:intron 20.0%
!!! TTTTGAATTATTTTGCCTTT+TGG - chr1_4:812094-812113 None:intergenic 20.0%
!! AGTATATGAATTGAGAATAA+TGG - chr1_4:812208-812227 None:intergenic 20.0%
!! AACAACATAAATAGACAAAA+AGG - chr1_4:812249-812268 None:intergenic 20.0%
!! AAATGGAAGATAGTATTAAT+AGG + chr1_4:813132-813151 Msa0142030:CDS 20.0%
!! AATGGAAGATAGTATTAATA+GGG + chr1_4:813133-813152 Msa0142030:CDS 20.0%
!! AATAAAATCTAATATCCCTA+GGG - chr1_4:813460-813479 None:intergenic 20.0%
!! AAATAAAATCTAATATCCCT+AGG - chr1_4:813461-813480 None:intergenic 20.0%
!!! GTTACTTTTAATATAGGTTT+AGG + chr1_4:813516-813535 Msa0142030:three_prime_UTR 20.0%
!! ACAGGTAAATATAATTAGTA+AGG + chr1_4:812030-812049 Msa0142030:intron 20.0%
!! CAGGTAAATATAATTAGTAA+GGG + chr1_4:812031-812050 Msa0142030:intron 20.0%
!!! TTTTGAATTATTTTGCCTTT+TGG - chr1_4:812094-812113 None:intergenic 20.0%
!! AGTATATGAATTGAGAATAA+TGG - chr1_4:812208-812227 None:intergenic 20.0%
!! AACAACATAAATAGACAAAA+AGG - chr1_4:812249-812268 None:intergenic 20.0%
!! AAATGGAAGATAGTATTAAT+AGG + chr1_4:813132-813151 Msa0142030:CDS 20.0%
!! AATGGAAGATAGTATTAATA+GGG + chr1_4:813133-813152 Msa0142030:CDS 20.0%
!! AATAAAATCTAATATCCCTA+GGG - chr1_4:813460-813479 None:intergenic 20.0%
!! AAATAAAATCTAATATCCCT+AGG - chr1_4:813461-813480 None:intergenic 20.0%
!!! GTTACTTTTAATATAGGTTT+AGG + chr1_4:813516-813535 Msa0142030:three_prime_UTR 20.0%
! TAATTAACAAGAGGTTATGA+AGG - chr1_4:811813-811832 None:intergenic 25.0%
!! TTTTCTTTTGTAAAAGGCTT+AGG - chr1_4:811938-811957 None:intergenic 25.0%
! AAAATCAAAGAGAGAAAACA+TGG + chr1_4:811958-811977 Msa0142030:exon 25.0%
! GTAAGGGTTTCAATTTAATT+TGG + chr1_4:812047-812066 Msa0142030:intron 25.0%
! TATTTGGTATATTCAAGAAG+AGG - chr1_4:812158-812177 None:intergenic 25.0%
!! AATTGAGAATAATGGAAGAA+AGG - chr1_4:812200-812219 None:intergenic 25.0%
! TTACTGAAGTTATGATGTAA+AGG - chr1_4:812795-812814 None:intergenic 25.0%
!! TCATCAATTTTATCTTCAAG+TGG + chr1_4:812909-812928 Msa0142030:CDS 25.0%
!! AATTTTATCTTCAAGTGGTT+TGG + chr1_4:812914-812933 Msa0142030:CDS 25.0%
! TTTGAACATTTCCTTCAAAA+GGG - chr1_4:813028-813047 None:intergenic 25.0%
!! TTTTGAACATTTCCTTCAAA+AGG - chr1_4:813029-813048 None:intergenic 25.0%
! AATCATGAAATGATAACTAG+TGG + chr1_4:813047-813066 Msa0142030:CDS 25.0%
! ATGGAAGATAGTATTAATAG+GGG + chr1_4:813134-813153 Msa0142030:CDS 25.0%
! ACACTATAAAATTCTACATC+TGG - chr1_4:813304-813323 None:intergenic 25.0%
! TTCCATTCAAAATAGATGAT+TGG + chr1_4:813393-813412 Msa0142030:three_prime_UTR 25.0%
! TAATTAACAAGAGGTTATGA+AGG - chr1_4:811813-811832 None:intergenic 25.0%
!! TTTTCTTTTGTAAAAGGCTT+AGG - chr1_4:811938-811957 None:intergenic 25.0%
! AAAATCAAAGAGAGAAAACA+TGG + chr1_4:811958-811977 Msa0142030:exon 25.0%
! GTAAGGGTTTCAATTTAATT+TGG + chr1_4:812047-812066 Msa0142030:intron 25.0%
! TATTTGGTATATTCAAGAAG+AGG - chr1_4:812158-812177 None:intergenic 25.0%
!! AATTGAGAATAATGGAAGAA+AGG - chr1_4:812200-812219 None:intergenic 25.0%
! TTACTGAAGTTATGATGTAA+AGG - chr1_4:812795-812814 None:intergenic 25.0%
!! TCATCAATTTTATCTTCAAG+TGG + chr1_4:812909-812928 Msa0142030:CDS 25.0%
!! AATTTTATCTTCAAGTGGTT+TGG + chr1_4:812914-812933 Msa0142030:CDS 25.0%
! TTTGAACATTTCCTTCAAAA+GGG - chr1_4:813028-813047 None:intergenic 25.0%
!! TTTTGAACATTTCCTTCAAA+AGG - chr1_4:813029-813048 None:intergenic 25.0%
! AATCATGAAATGATAACTAG+TGG + chr1_4:813047-813066 Msa0142030:CDS 25.0%
! ATGGAAGATAGTATTAATAG+GGG + chr1_4:813134-813153 Msa0142030:CDS 25.0%
! ACACTATAAAATTCTACATC+TGG - chr1_4:813304-813323 None:intergenic 25.0%
! TTCCATTCAAAATAGATGAT+TGG + chr1_4:813393-813412 Msa0142030:three_prime_UTR 25.0%
GCAAGAAAGTAATTAACAAG+AGG - chr1_4:811822-811841 None:intergenic 30.0%
! TCTTTTCTCTTTCTATCTTG+TGG + chr1_4:811888-811907 Msa0142030:five_prime_UTR 30.0%
AAAGGCTTAGGAAATAATAG+TGG - chr1_4:811926-811945 None:intergenic 30.0%
! CTTTTGGACAAAGAAACAAA+AGG - chr1_4:812078-812097 None:intergenic 30.0%
!! CTTTTGTTTCTTTGTCCAAA+AGG + chr1_4:812076-812095 Msa0142030:intron 30.0%
! GAAGTAGCAAAATTTTGTGT+TGG - chr1_4:812487-812506 None:intergenic 30.0%
! AGAGTGGATATTGTTATTAG+AGG - chr1_4:812718-812737 None:intergenic 30.0%
AAACTATGGTTTCAGTTACA+TGG + chr1_4:812848-812867 Msa0142030:CDS 30.0%
AACTATGGTTTCAGTTACAT+GGG + chr1_4:812849-812868 Msa0142030:CDS 30.0%
AATTAGCCAGAAAAGGAAAT+TGG - chr1_4:812980-812999 None:intergenic 30.0%
!!! ATTTCCTTTTCTGGCTAATT+TGG + chr1_4:812980-812999 Msa0142030:CDS 30.0%
!! AGTAATTTGTACCCTTTTGA+AGG + chr1_4:813014-813033 Msa0142030:CDS 30.0%
! TAGTATTAATAGGGGCTTTT+TGG + chr1_4:813142-813161 Msa0142030:CDS 30.0%
! AGTATTAATAGGGGCTTTTT+GGG + chr1_4:813143-813162 Msa0142030:CDS 30.0%
AGCAACAATAACAGTAATCA+AGG + chr1_4:813176-813195 Msa0142030:CDS 30.0%
! ATCAAGGAAGTGAACAATTT+TGG + chr1_4:813192-813211 Msa0142030:CDS 30.0%
!! GACCAATCATCTATTTTGAA+TGG - chr1_4:813398-813417 None:intergenic 30.0%
! TCAAAATAGATGATTGGTCA+AGG + chr1_4:813399-813418 Msa0142030:three_prime_UTR 30.0%
! CAAAATAGATGATTGGTCAA+GGG + chr1_4:813400-813419 Msa0142030:three_prime_UTR 30.0%
TTAGGTTTCTTTGTATGAGA+AGG + chr1_4:813534-813553 Msa0142030:three_prime_UTR 30.0%
TAGTAACATTGTGAGTTCAA+AGG + chr1_4:813576-813595 Msa0142030:three_prime_UTR 30.0%
GCAAGAAAGTAATTAACAAG+AGG - chr1_4:811822-811841 None:intergenic 30.0%
! TCTTTTCTCTTTCTATCTTG+TGG + chr1_4:811888-811907 Msa0142030:five_prime_UTR 30.0%
AAAGGCTTAGGAAATAATAG+TGG - chr1_4:811926-811945 None:intergenic 30.0%
! CTTTTGGACAAAGAAACAAA+AGG - chr1_4:812078-812097 None:intergenic 30.0%
!! CTTTTGTTTCTTTGTCCAAA+AGG + chr1_4:812076-812095 Msa0142030:intron 30.0%
! GAAGTAGCAAAATTTTGTGT+TGG - chr1_4:812487-812506 None:intergenic 30.0%
! AGAGTGGATATTGTTATTAG+AGG - chr1_4:812718-812737 None:intergenic 30.0%
AAACTATGGTTTCAGTTACA+TGG + chr1_4:812848-812867 Msa0142030:CDS 30.0%
AACTATGGTTTCAGTTACAT+GGG + chr1_4:812849-812868 Msa0142030:CDS 30.0%
AATTAGCCAGAAAAGGAAAT+TGG - chr1_4:812980-812999 None:intergenic 30.0%
!!! ATTTCCTTTTCTGGCTAATT+TGG + chr1_4:812980-812999 Msa0142030:CDS 30.0%
!! AGTAATTTGTACCCTTTTGA+AGG + chr1_4:813014-813033 Msa0142030:CDS 30.0%
! TAGTATTAATAGGGGCTTTT+TGG + chr1_4:813142-813161 Msa0142030:CDS 30.0%
! AGTATTAATAGGGGCTTTTT+GGG + chr1_4:813143-813162 Msa0142030:CDS 30.0%
AGCAACAATAACAGTAATCA+AGG + chr1_4:813176-813195 Msa0142030:CDS 30.0%
! ATCAAGGAAGTGAACAATTT+TGG + chr1_4:813192-813211 Msa0142030:CDS 30.0%
!! GACCAATCATCTATTTTGAA+TGG - chr1_4:813398-813417 None:intergenic 30.0%
! TCAAAATAGATGATTGGTCA+AGG + chr1_4:813399-813418 Msa0142030:three_prime_UTR 30.0%
! CAAAATAGATGATTGGTCAA+GGG + chr1_4:813400-813419 Msa0142030:three_prime_UTR 30.0%
TTAGGTTTCTTTGTATGAGA+AGG + chr1_4:813534-813553 Msa0142030:three_prime_UTR 30.0%
TAGTAACATTGTGAGTTCAA+AGG + chr1_4:813576-813595 Msa0142030:three_prime_UTR 30.0%
TCAAGCAAAAGTAGCAACAA+TGG + chr1_4:812624-812643 Msa0142030:CDS 35.0%
AGGTGTAAGGCCTAATATAT+CGG - chr1_4:812745-812764 None:intergenic 35.0%
! ATGATGACATTTGAGGTGTA+AGG - chr1_4:812758-812777 None:intergenic 35.0%
AACCTCAATGATGACATTTG+AGG - chr1_4:812765-812784 None:intergenic 35.0%
AGTAACCCTAATGATTTCGT+CGG + chr1_4:812810-812829 Msa0142030:CDS 35.0%
! GGAGATTTAGGGTTAAACTA+TGG + chr1_4:812834-812853 Msa0142030:CDS 35.0%
! TGTTGATGAGTCATTGACAT+TGG - chr1_4:812954-812973 None:intergenic 35.0%
CATGAAATGATAACTAGTGG+TGG + chr1_4:813050-813069 Msa0142030:CDS 35.0%
! CCAGAAGTTGAAATCACTTT+TGG - chr1_4:813086-813105 None:intergenic 35.0%
CCAAAAGTGATTTCAACTTC+TGG + chr1_4:813083-813102 Msa0142030:CDS 35.0%
! TCAACTTGCTTCTGTGAAAA+TGG + chr1_4:813115-813134 Msa0142030:CDS 35.0%
AATTGGACTGATCATGTTTC+TGG + chr1_4:813248-813267 Msa0142030:CDS 35.0%
! TGAAGTGAAGCTTATGGTTT+TGG + chr1_4:813335-813354 Msa0142030:three_prime_UTR 35.0%
TTAGATCAACTGAAAACCCT+AGG + chr1_4:813441-813460 Msa0142030:three_prime_UTR 35.0%
TAGATCAACTGAAAACCCTA+GGG + chr1_4:813442-813461 Msa0142030:three_prime_UTR 35.0%
GTTTCTTTGTATGAGAAGGT+TGG + chr1_4:813538-813557 Msa0142030:three_prime_UTR 35.0%
ACATTGTGAGTTCAAAGGAA+TGG + chr1_4:813581-813600 Msa0142030:three_prime_UTR 35.0%
TCAAGCAAAAGTAGCAACAA+TGG + chr1_4:812624-812643 Msa0142030:CDS 35.0%
AGGTGTAAGGCCTAATATAT+CGG - chr1_4:812745-812764 None:intergenic 35.0%
! ATGATGACATTTGAGGTGTA+AGG - chr1_4:812758-812777 None:intergenic 35.0%
AACCTCAATGATGACATTTG+AGG - chr1_4:812765-812784 None:intergenic 35.0%
AGTAACCCTAATGATTTCGT+CGG + chr1_4:812810-812829 Msa0142030:CDS 35.0%
! GGAGATTTAGGGTTAAACTA+TGG + chr1_4:812834-812853 Msa0142030:CDS 35.0%
! TGTTGATGAGTCATTGACAT+TGG - chr1_4:812954-812973 None:intergenic 35.0%
CATGAAATGATAACTAGTGG+TGG + chr1_4:813050-813069 Msa0142030:CDS 35.0%
! CCAGAAGTTGAAATCACTTT+TGG - chr1_4:813086-813105 None:intergenic 35.0%
CCAAAAGTGATTTCAACTTC+TGG + chr1_4:813083-813102 Msa0142030:CDS 35.0%
! TCAACTTGCTTCTGTGAAAA+TGG + chr1_4:813115-813134 Msa0142030:CDS 35.0%
AATTGGACTGATCATGTTTC+TGG + chr1_4:813248-813267 Msa0142030:CDS 35.0%
! TGAAGTGAAGCTTATGGTTT+TGG + chr1_4:813335-813354 Msa0142030:three_prime_UTR 35.0%
TTAGATCAACTGAAAACCCT+AGG + chr1_4:813441-813460 Msa0142030:three_prime_UTR 35.0%
TAGATCAACTGAAAACCCTA+GGG + chr1_4:813442-813461 Msa0142030:three_prime_UTR 35.0%
GTTTCTTTGTATGAGAAGGT+TGG + chr1_4:813538-813557 Msa0142030:three_prime_UTR 35.0%
ACATTGTGAGTTCAAAGGAA+TGG + chr1_4:813581-813600 Msa0142030:three_prime_UTR 35.0%
AGAGGTTATGAAGGTTTGAG+AGG - chr1_4:811804-811823 None:intergenic 40.0%
!! AAGAGTGTCTATGTGTGTGT+TGG - chr1_4:811872-811891 None:intergenic 40.0%
ATCAAGATAAGCTGCTGGTA+TGG - chr1_4:811993-812012 None:intergenic 40.0%
CAGAATCATCATCAACAACC+AGG + chr1_4:812279-812298 Msa0142030:CDS 40.0%
CATCATCAACAACCAGGAAA+CGG + chr1_4:812285-812304 Msa0142030:CDS 40.0%
! TGCTTGATCTCTTGTTTCTC+CGG - chr1_4:812611-812630 None:intergenic 40.0%
TGGAAACTCAACAAAGTCTC+CGG + chr1_4:812644-812663 Msa0142030:CDS 40.0%
TGTAAGGCCTAATATATCGG+CGG - chr1_4:812742-812761 None:intergenic 40.0%
CACCTCAAATGTCATCATTG+AGG + chr1_4:812760-812779 Msa0142030:CDS 40.0%
ATTTCGTCGGAGGAGATTTA+GGG + chr1_4:812823-812842 Msa0142030:CDS 40.0%
TATGGTTTCAGTTACATGGG+AGG + chr1_4:812852-812871 Msa0142030:CDS 40.0%
! ACAGCACCAATTTCCTTTTC+TGG + chr1_4:812971-812990 Msa0142030:CDS 40.0%
!!! TCCTTTTCTGGCTAATTTGG+AGG + chr1_4:812983-813002 Msa0142030:CDS 40.0%
!!! CCTTTTCTGGCTAATTTGGA+GGG + chr1_4:812984-813003 Msa0142030:CDS 40.0%
!! TAACTAGTGGTGGATATGTG+AGG + chr1_4:813060-813079 Msa0142030:CDS 40.0%
! TGGAATAGTGCTGTTGTTAC+TGG + chr1_4:813212-813231 Msa0142030:CDS 40.0%
CTGGTAATTCTGCAGCTAAT+TGG + chr1_4:813231-813250 Msa0142030:CDS 40.0%
GTGAAGTGAAGTGAAGCTTA+TGG + chr1_4:813329-813348 Msa0142030:three_prime_UTR 40.0%
!!! TGAAGCTTATGGTTTTGGTG+TGG + chr1_4:813340-813359 Msa0142030:three_prime_UTR 40.0%
! ATGATTGGTCAAGGGATTTG+AGG + chr1_4:813408-813427 Msa0142030:three_prime_UTR 40.0%
AGAGGTTATGAAGGTTTGAG+AGG - chr1_4:811804-811823 None:intergenic 40.0%
!! AAGAGTGTCTATGTGTGTGT+TGG - chr1_4:811872-811891 None:intergenic 40.0%
ATCAAGATAAGCTGCTGGTA+TGG - chr1_4:811993-812012 None:intergenic 40.0%
CAGAATCATCATCAACAACC+AGG + chr1_4:812279-812298 Msa0142030:CDS 40.0%
CATCATCAACAACCAGGAAA+CGG + chr1_4:812285-812304 Msa0142030:CDS 40.0%
! TGCTTGATCTCTTGTTTCTC+CGG - chr1_4:812611-812630 None:intergenic 40.0%
TGGAAACTCAACAAAGTCTC+CGG + chr1_4:812644-812663 Msa0142030:CDS 40.0%
TGTAAGGCCTAATATATCGG+CGG - chr1_4:812742-812761 None:intergenic 40.0%
CACCTCAAATGTCATCATTG+AGG + chr1_4:812760-812779 Msa0142030:CDS 40.0%
ATTTCGTCGGAGGAGATTTA+GGG + chr1_4:812823-812842 Msa0142030:CDS 40.0%
TATGGTTTCAGTTACATGGG+AGG + chr1_4:812852-812871 Msa0142030:CDS 40.0%
! ACAGCACCAATTTCCTTTTC+TGG + chr1_4:812971-812990 Msa0142030:CDS 40.0%
!!! TCCTTTTCTGGCTAATTTGG+AGG + chr1_4:812983-813002 Msa0142030:CDS 40.0%
!!! CCTTTTCTGGCTAATTTGGA+GGG + chr1_4:812984-813003 Msa0142030:CDS 40.0%
!! TAACTAGTGGTGGATATGTG+AGG + chr1_4:813060-813079 Msa0142030:CDS 40.0%
! TGGAATAGTGCTGTTGTTAC+TGG + chr1_4:813212-813231 Msa0142030:CDS 40.0%
CTGGTAATTCTGCAGCTAAT+TGG + chr1_4:813231-813250 Msa0142030:CDS 40.0%
GTGAAGTGAAGTGAAGCTTA+TGG + chr1_4:813329-813348 Msa0142030:three_prime_UTR 40.0%
!!! TGAAGCTTATGGTTTTGGTG+TGG + chr1_4:813340-813359 Msa0142030:three_prime_UTR 40.0%
! ATGATTGGTCAAGGGATTTG+AGG + chr1_4:813408-813427 Msa0142030:three_prime_UTR 40.0%
! TGTCTATGTGTGTGTTGGTG+AGG - chr1_4:811867-811886 None:intergenic 45.0%
CTTATCTTGATGCAGCCAAC+TGG + chr1_4:812002-812021 Msa0142030:CDS 45.0%
ATTTACCTGTTGCTGCCAGT+TGG - chr1_4:812020-812039 None:intergenic 45.0%
!! GTGTTGGTTGATTCACAACG+TGG - chr1_4:812471-812490 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTGTCT+GGG - chr1_4:812531-812550 None:intergenic 45.0%
ACTTCTGCAAGACTTGCAGA+AGG + chr1_4:812535-812554 Msa0142030:CDS 45.0%
CTAATATATCGGCGGAAGAG+TGG - chr1_4:812734-812753 None:intergenic 45.0%
CACTCTTCCGCCGATATATT+AGG + chr1_4:812732-812751 Msa0142030:CDS 45.0%
AACCCTAATGATTTCGTCGG+AGG + chr1_4:812813-812832 Msa0142030:CDS 45.0%
CTCCTCCGACGAAATCATTA+GGG - chr1_4:812818-812837 None:intergenic 45.0%
TCTCCTCCGACGAAATCATT+AGG - chr1_4:812819-812838 None:intergenic 45.0%
GATTTCGTCGGAGGAGATTT+AGG + chr1_4:812822-812841 Msa0142030:CDS 45.0%
TTCAGTTACATGGGAGGAGT+AGG + chr1_4:812858-812877 Msa0142030:CDS 45.0%
ATGGGAGGAGTAGGTGATTT+GGG + chr1_4:812867-812886 Msa0142030:CDS 45.0%
!! GGTGATTTGGGAAGTGCTTT+AGG + chr1_4:812879-812898 Msa0142030:CDS 45.0%
!! GATTTGGGAAGTGCTTTAGG+AGG + chr1_4:812882-812901 Msa0142030:CDS 45.0%
! CTTCAAGTGGTTTGGAGCAA+TGG + chr1_4:812922-812941 Msa0142030:CDS 45.0%
CCCTCCAAATTAGCCAGAAA+AGG - chr1_4:812987-813006 None:intergenic 45.0%
! TGTCTATGTGTGTGTTGGTG+AGG - chr1_4:811867-811886 None:intergenic 45.0%
CTTATCTTGATGCAGCCAAC+TGG + chr1_4:812002-812021 Msa0142030:CDS 45.0%
ATTTACCTGTTGCTGCCAGT+TGG - chr1_4:812020-812039 None:intergenic 45.0%
!! GTGTTGGTTGATTCACAACG+TGG - chr1_4:812471-812490 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTGTCT+GGG - chr1_4:812531-812550 None:intergenic 45.0%
ACTTCTGCAAGACTTGCAGA+AGG + chr1_4:812535-812554 Msa0142030:CDS 45.0%
CTAATATATCGGCGGAAGAG+TGG - chr1_4:812734-812753 None:intergenic 45.0%
CACTCTTCCGCCGATATATT+AGG + chr1_4:812732-812751 Msa0142030:CDS 45.0%
AACCCTAATGATTTCGTCGG+AGG + chr1_4:812813-812832 Msa0142030:CDS 45.0%
CTCCTCCGACGAAATCATTA+GGG - chr1_4:812818-812837 None:intergenic 45.0%
TCTCCTCCGACGAAATCATT+AGG - chr1_4:812819-812838 None:intergenic 45.0%
GATTTCGTCGGAGGAGATTT+AGG + chr1_4:812822-812841 Msa0142030:CDS 45.0%
TTCAGTTACATGGGAGGAGT+AGG + chr1_4:812858-812877 Msa0142030:CDS 45.0%
ATGGGAGGAGTAGGTGATTT+GGG + chr1_4:812867-812886 Msa0142030:CDS 45.0%
!! GGTGATTTGGGAAGTGCTTT+AGG + chr1_4:812879-812898 Msa0142030:CDS 45.0%
!! GATTTGGGAAGTGCTTTAGG+AGG + chr1_4:812882-812901 Msa0142030:CDS 45.0%
! CTTCAAGTGGTTTGGAGCAA+TGG + chr1_4:812922-812941 Msa0142030:CDS 45.0%
CCCTCCAAATTAGCCAGAAA+AGG - chr1_4:812987-813006 None:intergenic 45.0%
GCTGCATCAAGATAAGCTGC+TGG - chr1_4:811998-812017 None:intergenic 50.0%
CATCAACAACCAGGAAACGG+CGG + chr1_4:812288-812307 Msa0142030:CDS 50.0%
TGAGGTTGAGACTGTGACTG+TGG - chr1_4:812354-812373 None:intergenic 50.0%
CAGTCACAGTCTCAACCTCA+TGG + chr1_4:812354-812373 Msa0142030:CDS 50.0%
TCACAGTCTCAACCTCATGG+AGG + chr1_4:812357-812376 Msa0142030:CDS 50.0%
GTTTGCCATCCTTGCCCTAT+CGG - chr1_4:812418-812437 None:intergenic 50.0%
GATGGCAAACATGCCTATGC+CGG + chr1_4:812428-812447 Msa0142030:CDS 50.0%
!! GCAAGTCTTGCAGAAGTGTC+TGG - chr1_4:812532-812551 None:intergenic 50.0%
! GCAAGACTTGCAGAAGGTAC+TGG + chr1_4:812541-812560 Msa0142030:CDS 50.0%
!! TGCAGAAGGTACTGGACAAG+AGG + chr1_4:812549-812568 Msa0142030:CDS 50.0%
!! AGAAGGTACTGGACAAGAGG+CGG + chr1_4:812552-812571 Msa0142030:CDS 50.0%
TTGAACTAGCACTCCCCGTT+TGG - chr1_4:812683-812702 None:intergenic 50.0%
CATGGGAGGAGTAGGTGATT+TGG + chr1_4:812866-812885 Msa0142030:CDS 50.0%
! CAAGTGGTTTGGAGCAATGG+AGG + chr1_4:812925-812944 Msa0142030:CDS 50.0%
GCTGCATCAAGATAAGCTGC+TGG - chr1_4:811998-812017 None:intergenic 50.0%
CATCAACAACCAGGAAACGG+CGG + chr1_4:812288-812307 Msa0142030:CDS 50.0%
TGAGGTTGAGACTGTGACTG+TGG - chr1_4:812354-812373 None:intergenic 50.0%
CAGTCACAGTCTCAACCTCA+TGG + chr1_4:812354-812373 Msa0142030:CDS 50.0%
TCACAGTCTCAACCTCATGG+AGG + chr1_4:812357-812376 Msa0142030:CDS 50.0%
GTTTGCCATCCTTGCCCTAT+CGG - chr1_4:812418-812437 None:intergenic 50.0%
GATGGCAAACATGCCTATGC+CGG + chr1_4:812428-812447 Msa0142030:CDS 50.0%
!! GCAAGTCTTGCAGAAGTGTC+TGG - chr1_4:812532-812551 None:intergenic 50.0%
! GCAAGACTTGCAGAAGGTAC+TGG + chr1_4:812541-812560 Msa0142030:CDS 50.0%
!! TGCAGAAGGTACTGGACAAG+AGG + chr1_4:812549-812568 Msa0142030:CDS 50.0%
!! AGAAGGTACTGGACAAGAGG+CGG + chr1_4:812552-812571 Msa0142030:CDS 50.0%
TTGAACTAGCACTCCCCGTT+TGG - chr1_4:812683-812702 None:intergenic 50.0%
CATGGGAGGAGTAGGTGATT+TGG + chr1_4:812866-812885 Msa0142030:CDS 50.0%
! CAAGTGGTTTGGAGCAATGG+AGG + chr1_4:812925-812944 Msa0142030:CDS 50.0%
TGAGACTGTGACTGTGGTGG+TGG - chr1_4:812348-812367 None:intergenic 55.0%
GGTTGAGACTGTGACTGTGG+TGG - chr1_4:812351-812370 None:intergenic 55.0%
CAGTCTCAACCTCATGGAGG+AGG + chr1_4:812360-812379 Msa0142030:CDS 55.0%
!! GAGGATCCACCGGCTCAATA+AGG + chr1_4:812379-812398 Msa0142030:CDS 55.0%
!! CGATCCTGGCCTTATTGAGC+CGG - chr1_4:812391-812410 None:intergenic 55.0%
GCCAGGATCGATGTCCGATA+GGG + chr1_4:812401-812420 Msa0142030:CDS 55.0%
GATCGATGTCCGATAGGGCA+AGG + chr1_4:812406-812425 Msa0142030:CDS 55.0%
GATGTCCGATAGGGCAAGGA+TGG + chr1_4:812410-812429 Msa0142030:CDS 55.0%
GGACATTTCAGTGCTGCCTC+CGG - chr1_4:812450-812469 None:intergenic 55.0%
!! GCTCTAAGGAATGTCCCGGT+CGG + chr1_4:812576-812595 Msa0142030:CDS 55.0%
AACTAGCACTCCCCGTTTGG+CGG - chr1_4:812680-812699 None:intergenic 55.0%
TGAGACTGTGACTGTGGTGG+TGG - chr1_4:812348-812367 None:intergenic 55.0%
GGTTGAGACTGTGACTGTGG+TGG - chr1_4:812351-812370 None:intergenic 55.0%
CAGTCTCAACCTCATGGAGG+AGG + chr1_4:812360-812379 Msa0142030:CDS 55.0%
!! GAGGATCCACCGGCTCAATA+AGG + chr1_4:812379-812398 Msa0142030:CDS 55.0%
!! CGATCCTGGCCTTATTGAGC+CGG - chr1_4:812391-812410 None:intergenic 55.0%
GCCAGGATCGATGTCCGATA+GGG + chr1_4:812401-812420 Msa0142030:CDS 55.0%
GATCGATGTCCGATAGGGCA+AGG + chr1_4:812406-812425 Msa0142030:CDS 55.0%
GATGTCCGATAGGGCAAGGA+TGG + chr1_4:812410-812429 Msa0142030:CDS 55.0%
GGACATTTCAGTGCTGCCTC+CGG - chr1_4:812450-812469 None:intergenic 55.0%
!! GCTCTAAGGAATGTCCCGGT+CGG + chr1_4:812576-812595 Msa0142030:CDS 55.0%
AACTAGCACTCCCCGTTTGG+CGG - chr1_4:812680-812699 None:intergenic 55.0%
TGCAGCCAACTGGCAGCAAC+AGG + chr1_4:812012-812031 Msa0142030:CDS 60.0%
!! TGTGACTGTGGTGGTGGTGG+TGG - chr1_4:812342-812361 None:intergenic 60.0%
!! GACTGTGACTGTGGTGGTGG+TGG - chr1_4:812345-812364 None:intergenic 60.0%
CCTCATGGAGGAGGATCCAC+CGG + chr1_4:812369-812388 Msa0142030:CDS 60.0%
!! TCCACCGGCTCAATAAGGCC+AGG + chr1_4:812384-812403 Msa0142030:CDS 60.0%
!! TCCTGGCCTTATTGAGCCGG+TGG - chr1_4:812388-812407 None:intergenic 60.0%
GGCCAGGATCGATGTCCGAT+AGG + chr1_4:812400-812419 Msa0142030:CDS 60.0%
GCCCTATCGGACATCGATCC+TGG - chr1_4:812405-812424 None:intergenic 60.0%
GGCAAACATGCCTATGCCGG+AGG + chr1_4:812431-812450 Msa0142030:CDS 60.0%
TTCAGTGCTGCCTCCGGCAT+AGG - chr1_4:812444-812463 None:intergenic 60.0%
!! CGGCGCTCTAAGGAATGTCC+CGG + chr1_4:812572-812591 Msa0142030:CDS 60.0%
CTAAGGAATGTCCCGGTCGG+TGG + chr1_4:812579-812598 Msa0142030:CDS 60.0%
GTTTGGCGGTCAGAGCTTGC+CGG - chr1_4:812666-812685 None:intergenic 60.0%
! GGCAAGCTCTGACCGCCAAA+CGG + chr1_4:812665-812684 Msa0142030:CDS 60.0%
! GCAAGCTCTGACCGCCAAAC+GGG + chr1_4:812666-812685 Msa0142030:CDS 60.0%
! CAAGCTCTGACCGCCAAACG+GGG + chr1_4:812667-812686 Msa0142030:CDS 60.0%
TGCAGCCAACTGGCAGCAAC+AGG + chr1_4:812012-812031 Msa0142030:CDS 60.0%
!! TGTGACTGTGGTGGTGGTGG+TGG - chr1_4:812342-812361 None:intergenic 60.0%
!! GACTGTGACTGTGGTGGTGG+TGG - chr1_4:812345-812364 None:intergenic 60.0%
CCTCATGGAGGAGGATCCAC+CGG + chr1_4:812369-812388 Msa0142030:CDS 60.0%
!! TCCACCGGCTCAATAAGGCC+AGG + chr1_4:812384-812403 Msa0142030:CDS 60.0%
!! TCCTGGCCTTATTGAGCCGG+TGG - chr1_4:812388-812407 None:intergenic 60.0%
GGCCAGGATCGATGTCCGAT+AGG + chr1_4:812400-812419 Msa0142030:CDS 60.0%
GCCCTATCGGACATCGATCC+TGG - chr1_4:812405-812424 None:intergenic 60.0%
GGCAAACATGCCTATGCCGG+AGG + chr1_4:812431-812450 Msa0142030:CDS 60.0%
TTCAGTGCTGCCTCCGGCAT+AGG - chr1_4:812444-812463 None:intergenic 60.0%
!! CGGCGCTCTAAGGAATGTCC+CGG + chr1_4:812572-812591 Msa0142030:CDS 60.0%
CTAAGGAATGTCCCGGTCGG+TGG + chr1_4:812579-812598 Msa0142030:CDS 60.0%
GTTTGGCGGTCAGAGCTTGC+CGG - chr1_4:812666-812685 None:intergenic 60.0%
! GGCAAGCTCTGACCGCCAAA+CGG + chr1_4:812665-812684 Msa0142030:CDS 60.0%
! GCAAGCTCTGACCGCCAAAC+GGG + chr1_4:812666-812685 Msa0142030:CDS 60.0%
! CAAGCTCTGACCGCCAAACG+GGG + chr1_4:812667-812686 Msa0142030:CDS 60.0%
GAGACTGAGCCGCCGTTTCC+TGG - chr1_4:812300-812319 None:intergenic 65.0%
CCGGTGGATCCTCCTCCATG+AGG - chr1_4:812372-812391 None:intergenic 65.0%
GGACAAGAGGCGGCGCTCTA+AGG + chr1_4:812562-812581 Msa0142030:CDS 65.0%
AGGAATGTCCCGGTCGGTGG+AGG + chr1_4:812582-812601 Msa0142030:CDS 65.0%
GAGACTGAGCCGCCGTTTCC+TGG - chr1_4:812300-812319 None:intergenic 65.0%
CCGGTGGATCCTCCTCCATG+AGG - chr1_4:812372-812391 None:intergenic 65.0%
GGACAAGAGGCGGCGCTCTA+AGG + chr1_4:812562-812581 Msa0142030:CDS 65.0%
AGGAATGTCCCGGTCGGTGG+AGG + chr1_4:812582-812601 Msa0142030:CDS 65.0%
TCCCGGTCGGTGGAGGCTTC+CGG + chr1_4:812589-812608 Msa0142030:CDS 70.0%
TCCGGAAGCCTCCACCGACC+GGG - chr1_4:812593-812612 None:intergenic 70.0%
CTCCGGAAGCCTCCACCGAC+CGG - chr1_4:812594-812613 None:intergenic 70.0%
TCCCGGTCGGTGGAGGCTTC+CGG + chr1_4:812589-812608 Msa0142030:CDS 70.0%
TCCGGAAGCCTCCACCGACC+GGG - chr1_4:812593-812612 None:intergenic 70.0%
CTCCGGAAGCCTCCACCGAC+CGG - chr1_4:812594-812613 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 811785 813646 811785 ID=Msa0142030;Name=Msa0142030
chr1_4 mRNA 811785 813646 811785 ID=Msa0142030-mRNA-1;Parent=Msa0142030;Name=Msa0142030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=192|1|1|1|1|1|2|336|363
chr1_4 exon 811785 812033 811785 ID=Msa0142030-mRNA-1:exon:229;Parent=Msa0142030-mRNA-1
chr1_4 exon 812276 813646 812276 ID=Msa0142030-mRNA-1:exon:230;Parent=Msa0142030-mRNA-1
chr1_4 five_prime_UTR 811785 811976 811785 ID=Msa0142030-mRNA-1:five_prime_utr;Parent=Msa0142030-mRNA-1
chr1_4 CDS 811977 812033 811977 ID=Msa0142030-mRNA-1:cds;Parent=Msa0142030-mRNA-1
chr1_4 CDS 812276 813310 812276 ID=Msa0142030-mRNA-1:cds;Parent=Msa0142030-mRNA-1
chr1_4 three_prime_UTR 813311 813646 813311 ID=Msa0142030-mRNA-1:three_prime_utr;Parent=Msa0142030-mRNA-1
Gene Sequence

>Msa0142030

ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAGCAACAGCAACAGAATCATCATCAACAACCAGGAAACGGCGGCTCAGTCTCTCAACAACTGCTTCAGACACCACCACCACCACCACAGTCACAGTCTCAACCTCATGGAGGAGGATCCACCGGCTCAATAAGGCCAGGATCGATGTCCGATAGGGCAAGGATGGCAAACATGCCTATGCCGGAGGCAGCACTGAAATGTCCACGTTGTGAATCAACCAACACAAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCCAGACACTTCTGCAAGACTTGCAGAAGGTACTGGACAAGAGGCGGCGCTCTAAGGAATGTCCCGGTCGGTGGAGGCTTCCGGAGAAACAAGAGATCAAGCAAAAGTAGCAACAATGGAAACTCAACAAAGTCTCCGGCAAGCTCTGACCGCCAAACGGGGAGTGCTAGTTCAACAAACTCAATCACCTCTAATAACAATATCCACTCTTCCGCCGATATATTAGGCCTTACACCTCAAATGTCATCATTGAGGTTCATGACACCTTTACATCATAACTTCAGTAACCCTAATGATTTCGTCGGAGGAGATTTAGGGTTAAACTATGGTTTCAGTTACATGGGAGGAGTAGGTGATTTGGGAAGTGCTTTAGGAGGTAATTCATCAATTTTATCTTCAAGTGGTTTGGAGCAATGGAGGATGCCAATGTCAATGACTCATCAACAGCACCAATTTCCTTTTCTGGCTAATTTGGAGGGTTCAAATAGTAATTTGTACCCTTTTGAAGGAAATGTTCAAAATCATGAAATGATAACTAGTGGTGGATATGTGAGGCCAAAAGTGATTTCAACTTCTGGAATTATGACTCAACTTGCTTCTGTGAAAATGGAAGATAGTATTAATAGGGGCTTTTTGGGAATTAGCACAAGCAACAATAACAGTAATCAAGGAAGTGAACAATTTTGGAATAGTGCTGTTGTTACTGGTAATTCTGCAGCTAATTGGACTGATCATGTTTCTGGTTTTAGCTCTTCTTCTAATACTACTAGTAACCAGATGTAG
Protein sequence

>Msa0142030

MVFTSIPAAYLDAANWQQQQQNHHQQPGNGGSVSQQLLQTPPPPPQSQSQPHGGGSTGSIRPGSMSDRARMANMPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSSKSSNNGNSTKSPASSDRQTGSASSTNSITSNNNIHSSADILGLTPQMSSLRFMTPLHHNFSNPNDFVGGDLGLNYGFSYMGGVGDLGSALGGNSSILSSSGLEQWRMPMSMTHQQHQFPFLANLEGSNSNLYPFEGNVQNHEMITSGGYVRPKVISTSGIMTQLASVKMEDSINRGFLGISTSNNNSNQGSEQFWNSAVVTGNSAANWTDHVSGFSSSSNTTSNQM*