AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142900 MtrunA17_Chr1g0149841 91.784 499 33 3 266 758 1 497 0.0 885
Msa0142900 MtrunA17_Chr1g0149841 91.144 271 10 1 1 257 1 271 2.42e-149 445
Msa0142900 MtrunA17_Chr1g0149851 62.384 537 103 15 266 757 1 483 0.0 569
Msa0142900 MtrunA17_Chr1g0149851 72.378 286 43 3 1 257 1 279 3.65e-122 377
Msa0142900 MtrunA17_Chr3g0137101 46.453 592 196 18 268 758 6 577 2.96e-143 435
Msa0142900 MtrunA17_Chr3g0137101 64.964 274 75 4 3 257 6 277 3.71e-104 333
Msa0142900 MtrunA17_Chr7g0275891 66.017 359 73 9 266 604 1 330 3.27e-139 414
Msa0142900 MtrunA17_Chr7g0275891 72.963 270 44 4 1 242 1 269 1.47e-120 365
Msa0142900 MtrunA17_Chr7g0275401 70.803 274 70 3 266 532 1 271 1.44e-117 356
Msa0142900 MtrunA17_Chr7g0275401 68.030 269 74 2 1 257 1 269 1.42e-109 335
Msa0142900 MtrunA17_Chr1g0149831 91.327 196 8 2 329 518 1 193 4.29e-106 323
Msa0142900 MtrunA17_Chr1g0149831 83.945 218 18 2 64 267 1 215 2.26e-101 311
Msa0142900 MtrunA17_Chr2g0304841 43.058 497 222 15 268 713 16 502 2.52e-100 324
Msa0142900 MtrunA17_Chr2g0304841 54.286 280 102 4 3 259 16 292 1.22e-80 271
Msa0142900 MtrunA17_Chr4g0067981 55.469 256 106 3 267 516 28 281 3.88e-84 281
Msa0142900 MtrunA17_Chr4g0067981 49.296 284 97 5 2 257 28 292 1.46e-78 266
Msa0142900 MtrunA17_Chr4g0074411 46.196 368 164 10 270 620 18 368 2.31e-83 277
Msa0142900 MtrunA17_Chr4g0074411 51.737 259 104 4 5 249 18 269 5.26e-72 246
Msa0142900 MtrunA17_Chr2g0294911 49.488 293 131 4 266 548 25 310 1.67e-82 275
Msa0142900 MtrunA17_Chr2g0294911 46.263 281 113 3 1 257 25 291 2.63e-76 258
Msa0142900 MtrunA17_Chr1g0161431 51.880 266 105 4 269 518 10 268 1.32e-80 270
Msa0142900 MtrunA17_Chr1g0161431 49.615 260 112 3 4 245 10 268 1.10e-74 254
Msa0142900 MtrunA17_Chr4g0074401 45.833 336 160 8 268 594 15 337 4.34e-80 268
Msa0142900 MtrunA17_Chr4g0074401 48.148 270 124 3 3 257 15 283 2.13e-69 239
Msa0142900 MtrunA17_Chr8g0376881 54.023 261 104 4 265 515 20 274 2.57e-76 256
Msa0142900 MtrunA17_Chr8g0376881 52.549 255 103 3 3 242 23 274 3.93e-73 248
Msa0142900 MtrunA17_Chr3g0123131 44.282 341 170 5 270 599 13 344 1.36e-73 249
Msa0142900 MtrunA17_Chr3g0123131 47.670 279 123 4 5 265 13 286 8.97e-70 239
Msa0142900 MtrunA17_Chr3g0134461 53.648 233 55 2 267 498 5 185 1.07e-63 211
Msa0142900 MtrunA17_Chr3g0134461 50.202 247 64 4 2 247 5 193 8.02e-59 197
Msa0142900 MtrunA17_Chr4g0074421 58.333 180 68 3 320 498 2 175 5.59e-57 192
Msa0142900 MtrunA17_Chr4g0074421 54.645 183 76 3 55 236 2 178 4.85e-53 182
Msa0142900 MtrunA17_Chr3g0134481 68.992 129 40 0 2 130 5 133 1.60e-50 175
Msa0142900 MtrunA17_Chr3g0134481 68.992 129 40 0 267 395 5 133 1.60e-50 175
Msa0142900 MtrunA17_Chr3g0134481 72.727 44 12 0 455 498 131 174 5.24e-14 71.2
Msa0142900 MtrunA17_Chr4g0009851 37.079 267 132 5 270 530 11 247 3.08e-46 167
Msa0142900 MtrunA17_Chr4g0009851 35.000 280 137 6 5 269 11 260 5.60e-43 158
Msa0142900 MtrunA17_Chr4g0009901 37.200 250 123 5 264 507 4 225 2.32e-41 152
Msa0142900 MtrunA17_Chr4g0009901 34.444 270 134 6 2 257 7 247 5.07e-39 145
Msa0142900 MtrunA17_Chr4g0009981 36.036 222 107 6 315 530 2 194 4.34e-33 128
Msa0142900 MtrunA17_Chr4g0009981 34.043 235 111 6 50 269 2 207 2.32e-31 123
Msa0142900 MtrunA17_Chr6g0471041 31.765 255 138 4 259 506 3 228 1.15e-30 125
Msa0142900 MtrunA17_Chr6g0471041 31.197 234 131 3 4 236 13 217 2.40e-27 115
Msa0142900 MtrunA17_Chr8g0391911 33.200 250 139 6 263 499 2 236 1.70e-28 115
Msa0142900 MtrunA17_Chr8g0391911 32.773 238 124 7 5 225 9 227 1.24e-23 100
Msa0142900 MtrunA17_Chr6g0469321 73.034 89 18 1 472 554 70 158 2.39e-27 109
Msa0142900 MtrunA17_Chr8g0350761 29.412 255 155 6 273 507 20 269 6.40e-24 105
Msa0142900 MtrunA17_Chr8g0350761 28.685 251 154 6 8 234 20 269 5.31e-21 97.1
Msa0142900 MtrunA17_Chr6g0456631 36.364 132 81 2 263 392 2 132 5.46e-23 96.7
Msa0142900 MtrunA17_Chr6g0456631 37.008 127 77 2 3 127 7 132 5.86e-22 93.6
Msa0142900 MtrunA17_Chr3g0127941 34.532 139 86 2 9 143 56 193 5.84e-22 101
Msa0142900 MtrunA17_Chr3g0127941 34.532 139 86 2 274 408 56 193 5.84e-22 101
Msa0142900 MtrunA17_Chr4g0011071 32.530 166 85 3 52 217 36 174 1.46e-21 92.8
Msa0142900 MtrunA17_Chr4g0011071 31.928 166 86 3 317 482 36 174 4.25e-21 91.3
Msa0142900 MtrunA17_Chr8g0345901 34.524 168 96 3 11 164 38 205 3.10e-21 99.0
Msa0142900 MtrunA17_Chr8g0345901 33.929 168 97 3 276 429 38 205 2.80e-20 95.9
Msa0142900 MtrunA17_Chr7g0276361 32.258 186 111 5 267 443 5 184 9.26e-21 97.1
Msa0142900 MtrunA17_Chr7g0276361 33.862 189 99 5 2 167 5 190 1.99e-20 96.3
Msa0142900 MtrunA17_Chr1g0181811 36.885 122 74 2 9 127 85 206 4.11e-19 92.4
Msa0142900 MtrunA17_Chr1g0181811 36.885 122 74 2 274 392 85 206 4.11e-19 92.4
Msa0142900 MtrunA17_Chr4g0030271 35.862 145 83 4 258 392 66 210 8.56e-19 91.3
Msa0142900 MtrunA17_Chr4g0030271 36.220 127 77 2 5 127 84 210 1.72e-18 90.5
Msa0142900 MtrunA17_Chr3g0091641 31.973 147 89 2 259 394 1 147 1.41e-18 90.1
Msa0142900 MtrunA17_Chr3g0091641 33.871 124 79 1 9 129 24 147 5.92e-18 88.2
Msa0142900 MtrunA17_Chr8g0383961 35.484 124 80 0 4 127 13 136 1.87e-18 86.3
Msa0142900 MtrunA17_Chr8g0383961 35.484 124 80 0 269 392 13 136 1.87e-18 86.3
Msa0142900 MtrunA17_Chr6g0473731 31.515 165 86 4 350 508 10 153 2.09e-18 89.0
Msa0142900 MtrunA17_Chr6g0473731 28.485 165 83 4 85 235 10 153 1.52e-13 73.6
Msa0142900 MtrunA17_Chr4g0031961 42.478 113 53 3 421 521 94 206 1.85e-17 84.0
Msa0142900 MtrunA17_Chr4g0031961 37.168 113 51 3 156 248 94 206 1.51e-11 66.2
Msa0142900 MtrunA17_Chr4g0009991 35.385 130 56 2 97 226 1 102 7.37e-17 77.4
Msa0142900 MtrunA17_Chr4g0061021 32.258 124 81 1 9 129 33 156 1.46e-16 84.0
Msa0142900 MtrunA17_Chr4g0061021 32.258 124 81 1 274 394 33 156 1.46e-16 84.0
Msa0142900 MtrunA17_Chr5g0423031 38.679 106 59 3 264 368 4 104 8.17e-16 76.3
Msa0142900 MtrunA17_Chr5g0423031 38.835 103 57 3 2 103 7 104 1.08e-15 75.9
Msa0142900 MtrunA17_Chr7g0255711 55.000 60 21 1 455 508 90 149 1.06e-13 72.8
Msa0142900 MtrunA17_Chr4g0010001 37.931 87 53 1 264 350 4 89 8.51e-13 64.7
Msa0142900 MtrunA17_Chr4g0010001 38.095 84 51 1 2 85 7 89 1.04e-12 64.7
Msa0142900 MtrunA17_Chr5g0400241 34.677 124 77 2 5 127 14 134 1.77e-11 67.4
Msa0142900 MtrunA17_Chr5g0400241 34.677 124 77 2 270 392 14 134 1.77e-11 67.4
Msa0142900 MtrunA17_Chr5g0400241 45.455 66 30 1 449 508 304 369 4.78e-11 66.2
Msa0142900 MtrunA17_Chr2g0324891 35.965 114 56 3 453 560 158 260 2.73e-11 66.6
Msa0142900 MtrunA17_Chr8g0352871 28.986 138 78 3 11 128 11 148 5.15e-11 62.4
Msa0142900 MtrunA17_Chr8g0352871 28.986 138 78 3 276 393 11 148 5.15e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142900 AT2G25180.1 56.548 336 122 10 268 591 11 334 1.09e-102 328
Msa0142900 AT2G25180.1 59.302 258 85 4 3 245 11 263 3.99e-88 290
Msa0142900 AT4G31920.1 47.317 410 152 12 262 649 5 372 3.33e-94 304
Msa0142900 AT4G31920.1 59.677 248 70 4 3 236 11 242 2.84e-84 278
Msa0142900 AT3G16857.1 48.039 306 119 6 268 544 31 325 1.66e-82 276
Msa0142900 AT3G16857.1 45.645 287 124 3 3 257 31 317 1.37e-74 255
Msa0142900 AT3G16857.2 48.039 306 119 6 268 544 31 325 4.76e-82 276
Msa0142900 AT3G16857.2 45.645 287 124 3 3 257 31 317 3.66e-74 254
Msa0142900 AT5G58080.1 45.312 384 158 12 267 626 11 366 1.01e-76 260
Msa0142900 AT5G58080.1 51.254 279 96 6 2 257 11 272 1.04e-66 233
Msa0142900 AT2G01760.1 41.160 362 179 10 264 596 1 357 9.33e-70 234
Msa0142900 AT2G01760.1 47.082 257 115 4 1 236 3 259 1.30e-63 218
Msa0142900 AT1G67710.1 52.590 251 100 5 271 508 8 252 1.24e-68 235
Msa0142900 AT1G67710.1 49.802 253 106 4 6 240 8 257 1.60e-64 224
Msa0142900 AT3G16857.3 47.170 265 100 6 309 544 2 255 1.15e-65 229
Msa0142900 AT3G16857.3 44.309 246 105 3 44 257 2 247 7.73e-58 208
Msa0142900 AT2G01760.2 38.205 390 179 11 264 596 1 385 1.14e-63 218
Msa0142900 AT2G01760.2 42.456 285 115 5 1 236 3 287 8.42e-58 202
Msa0142900 AT1G67710.2 50.259 193 77 5 329 508 1 187 1.05e-43 164
Msa0142900 AT1G67710.2 46.667 195 83 4 64 240 1 192 8.10e-40 153
Msa0142900 AT5G49240.1 37.391 230 141 2 270 498 38 265 1.27e-43 159
Msa0142900 AT5G49240.1 37.387 222 136 2 5 225 38 257 6.30e-41 152
Msa0142900 AT2G01760.3 45.876 194 92 4 329 509 1 194 5.72e-41 153
Msa0142900 AT2G01760.3 43.299 194 89 4 64 236 1 194 1.19e-36 140
Msa0142900 AT3G62670.1 35.433 254 139 8 275 516 42 282 3.28e-36 142
Msa0142900 AT3G62670.1 35.897 234 126 7 10 237 42 257 9.51e-35 138
Msa0142900 AT1G67710.3 44.509 173 77 5 349 508 12 178 3.05e-30 125
Msa0142900 AT1G67710.3 40.571 175 83 4 84 240 12 183 1.55e-26 114
Msa0142900 AT1G49190.1 29.197 274 170 6 269 526 29 294 2.01e-28 119
Msa0142900 AT1G49190.1 30.000 250 158 4 4 244 29 270 2.89e-27 115
Msa0142900 AT5G07210.2 30.241 291 150 9 260 509 3 281 8.96e-28 119
Msa0142900 AT5G07210.2 26.715 277 147 7 7 236 14 281 9.89e-22 100
Msa0142900 AT5G07210.1 29.766 299 149 11 260 509 3 289 1.72e-25 112
Msa0142900 AT5G07210.1 26.316 285 146 9 7 236 14 289 1.79e-19 93.6
Msa0142900 AT2G27070.1 29.225 284 140 8 272 508 14 283 8.12e-25 110
Msa0142900 AT2G27070.1 25.704 284 142 8 7 235 14 283 1.86e-17 87.0
Msa0142900 AT2G46790.3 39.837 123 69 2 9 127 37 158 1.31e-23 105
Msa0142900 AT2G46790.3 39.837 123 69 2 274 392 37 158 1.31e-23 105
Msa0142900 AT2G46790.1 39.837 123 69 2 9 127 37 158 1.55e-23 105
Msa0142900 AT2G46790.1 39.837 123 69 2 274 392 37 158 1.55e-23 105
Msa0142900 AT1G49190.2 37.600 125 78 0 4 128 29 153 6.12e-22 101
Msa0142900 AT1G49190.2 37.600 125 78 0 269 393 29 153 6.12e-22 101
Msa0142900 AT5G24470.1 36.719 128 76 2 7 130 48 174 4.38e-21 98.6
Msa0142900 AT5G24470.1 36.719 128 76 2 272 395 48 174 4.38e-21 98.6
Msa0142900 AT5G02810.1 38.525 122 72 1 9 127 78 199 4.82e-20 95.9
Msa0142900 AT5G02810.1 38.525 122 72 1 274 392 78 199 4.82e-20 95.9
Msa0142900 AT5G60100.7 37.795 127 75 2 5 127 59 185 8.34e-20 93.2
Msa0142900 AT5G60100.7 37.795 127 75 2 270 392 59 185 8.34e-20 93.2
Msa0142900 AT5G60100.6 37.795 127 75 2 5 127 59 185 8.34e-20 93.2
Msa0142900 AT5G60100.6 37.795 127 75 2 270 392 59 185 8.34e-20 93.2
Msa0142900 AT5G60100.4 37.795 127 75 2 5 127 59 185 8.34e-20 93.2
Msa0142900 AT5G60100.4 37.795 127 75 2 270 392 59 185 8.34e-20 93.2
Msa0142900 AT5G60100.5 37.795 127 75 2 5 127 59 185 1.33e-19 93.2
Msa0142900 AT5G60100.5 37.795 127 75 2 270 392 59 185 1.33e-19 93.2
Msa0142900 AT5G60100.3 37.795 127 75 2 5 127 59 185 1.33e-19 93.2
Msa0142900 AT5G60100.3 37.795 127 75 2 270 392 59 185 1.33e-19 93.2
Msa0142900 AT5G60100.1 37.795 127 75 2 5 127 59 185 1.33e-19 93.2
Msa0142900 AT5G60100.1 37.795 127 75 2 270 392 59 185 1.33e-19 93.2
Msa0142900 AT5G60100.2 37.795 127 75 2 5 127 59 185 2.73e-19 92.4
Msa0142900 AT5G60100.2 37.795 127 75 2 270 392 59 185 2.73e-19 92.4
Msa0142900 AT5G61380.1 33.871 124 79 1 9 129 19 142 4.43e-18 89.4
Msa0142900 AT5G61380.1 33.871 124 79 1 274 394 19 142 4.43e-18 89.4
Msa0142900 AT5G59570.2 43.011 93 47 1 435 521 120 212 1.23e-16 81.6
Msa0142900 AT5G59570.2 37.500 112 48 3 170 264 120 226 2.92e-11 65.9
Msa0142900 AT5G59570.1 43.011 93 47 1 435 521 120 212 1.23e-16 81.6
Msa0142900 AT5G59570.1 37.500 112 48 3 170 264 120 226 2.92e-11 65.9
Msa0142900 AT3G46640.2 33.333 159 86 5 369 508 45 202 4.03e-15 77.8
Msa0142900 AT3G46640.1 33.333 159 86 5 369 508 45 202 4.03e-15 77.8
Msa0142900 AT2G40970.1 39.815 108 55 2 434 531 79 186 4.43e-15 76.3
Msa0142900 AT3G46640.3 33.333 159 86 5 369 508 45 202 4.76e-15 77.4
Msa0142900 AT5G05090.1 44.304 79 38 1 436 508 61 139 5.09e-14 73.6
Msa0142900 AT3G10760.1 55.000 60 21 1 455 508 104 163 6.74e-14 74.3
Msa0142900 AT5G44190.2 50.704 71 29 1 448 512 139 209 1.72e-13 73.2
Msa0142900 AT5G44190.1 50.704 71 29 1 448 512 139 209 1.82e-13 73.6
Msa0142900 AT3G57040.2 28.395 162 94 2 276 415 11 172 3.91e-12 67.4
Msa0142900 AT3G57040.2 28.395 162 94 2 11 150 11 172 3.95e-12 67.4
Msa0142900 AT3G57040.1 28.395 162 94 2 276 415 11 172 3.91e-12 67.4
Msa0142900 AT3G57040.1 28.395 162 94 2 11 150 11 172 3.95e-12 67.4
Msa0142900 AT3G56380.2 31.298 131 76 2 9 125 20 150 1.97e-11 63.2
Msa0142900 AT3G56380.2 31.298 131 76 2 274 390 20 150 1.97e-11 63.2
Msa0142900 AT2G20570.1 34.646 127 64 3 405 512 89 215 3.14e-11 66.6
Msa0142900 AT3G56380.1 31.538 130 76 2 9 125 20 149 5.00e-11 62.0
Msa0142900 AT3G56380.1 31.538 130 76 2 274 390 20 149 5.00e-11 62.0
Msa0142900 AT2G40670.2 32.331 133 74 2 9 125 29 161 6.49e-11 62.0
Msa0142900 AT2G40670.2 32.331 133 74 2 274 390 29 161 6.49e-11 62.0

Find 152 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAACATGTCTCAAGATTT+TGG 0.179210 1_4:+1813693 Msa0142900:CDS
TAGAACATGTCTCAAGATTT+TGG 0.179210 1_4:+1819385 Msa0142900:CDS
TTGTTTGTGAAACTGAAATT+TGG 0.235409 1_4:-1821553 None:intergenic
GGAGGTTATTGGTCATGTTT+TGG 0.244923 1_4:-1821531 None:intergenic
ACTGAAATTTGGGAGGTTAT+TGG 0.250594 1_4:-1821542 None:intergenic
ATTCCTTTCATCACCATCTT+TGG 0.256348 1_4:-1814543 None:intergenic
ATTCCTTTCATCACCATCTT+TGG 0.256348 1_4:-1820227 None:intergenic
ATCTAAAAGGATTGTTATAA+TGG 0.273251 1_4:-1821306 None:intergenic
CATTTGGATTGCCGCGAGTT+AGG 0.293700 1_4:-1821477 None:intergenic
ACAGAAGGTGCAATGGTATT+TGG 0.304024 1_4:+1821674 Msa0142900:CDS
TGTACCTCTTTCAGTCTAAC+AGG 0.317233 1_4:-1820281 None:intergenic
CCATTTCCACTATCAGAATT+AGG 0.318838 1_4:-1814681 None:intergenic
CCATTTCCACTATCAGAATT+AGG 0.318838 1_4:-1820365 None:intergenic
ATGAATGATCAGTTTCCTAT+TGG 0.330551 1_4:+1813643 Msa0142900:CDS
ATGAATGATCAGTTTCCTAT+TGG 0.330551 1_4:+1819335 Msa0142900:CDS
CCTAATTCTGATAGTGGAAA+TGG 0.330629 1_4:+1814681 Msa0142900:CDS
CCTAATTCTGATAGTGGAAA+TGG 0.330629 1_4:+1820365 Msa0142900:CDS
ATACCTCTTTGAACATCATT+TGG 0.333499 1_4:-1821493 None:intergenic
CCAGATGGAAAGGATCTAAA+AGG 0.348535 1_4:-1821319 None:intergenic
TCCAACTCCACTTCTTAAAT+AGG 0.361147 1_4:-1821242 None:intergenic
GGAAGATAAGAGTTTGTTCC+AGG 0.362766 1_4:-1821718 None:intergenic
ATAGGCTCTTCTATGATTCC+TGG 0.370372 1_4:+1821850 Msa0142900:CDS
GGAAACTTGGACTACAATTA+TGG 0.374368 1_4:+1821895 Msa0142900:CDS
TGTTTGTGAAACTGAAATTT+GGG 0.375065 1_4:-1821552 None:intergenic
TTTAAGCTTCTTGAGCTTGT+TGG 0.375182 1_4:+1814388 Msa0142900:CDS
AACAATCCCTTGATGTTAGA+AGG 0.383955 1_4:+1821571 Msa0142900:CDS
TTTAAGCTCCTTGAGCTTGT+TGG 0.387237 1_4:+1820072 Msa0142900:CDS
ACATGGTGCGTGTGATTATC+TGG 0.387305 1_4:+1814569 Msa0142900:CDS
ACATGGTGCGTGTGATTATC+TGG 0.387305 1_4:+1820253 Msa0142900:CDS
ATTTGGATTGCCGCGAGTTA+GGG 0.388130 1_4:-1821476 None:intergenic
TAAAAGAGGTACAGATCATT+TGG 0.388547 1_4:+1814607 Msa0142900:CDS
TGAAAGAGGTACAGATCATT+TGG 0.404224 1_4:+1820291 Msa0142900:CDS
ATGCCTCATGTGTCATTTCA+AGG 0.407109 1_4:+1821766 Msa0142900:CDS
AATGTGATCGGCAGTTCAAT+AGG 0.412930 1_4:+1821832 Msa0142900:CDS
TATGAACATTGCTGATTACT+AGG 0.423694 1_4:-1814348 None:intergenic
TATGAACATTGCTGATTACT+AGG 0.423694 1_4:-1820032 None:intergenic
TCATGTGTCATTTCAAGGTT+GGG 0.431069 1_4:+1821771 Msa0142900:CDS
TACCATGGTATTGACACCTT+TGG 0.431203 1_4:-1813726 None:intergenic
TACCATGGTATTGACACCTT+TGG 0.431203 1_4:-1819418 None:intergenic
CCATTCATATTCACATTAGT+AGG 0.431732 1_4:-1821370 None:intergenic
AGAATGTCACTGGGAAAGAT+TGG 0.434197 1_4:-1815523 None:intergenic
GGACATTTGCATACATTGAA+TGG 0.439183 1_4:+1821265 Msa0142900:CDS
GTTGCTGCGGTTAATCAATT+AGG 0.445001 1_4:+1820563 Msa0142900:CDS
CCTACTAATGTGAATATGAA+TGG 0.451724 1_4:+1821370 Msa0142900:CDS
TCATTTGGCAGCATGTAATC+AGG 0.452747 1_4:+1814622 Msa0142900:CDS
TCATTTGGCAGCATGTAATC+AGG 0.452747 1_4:+1820306 Msa0142900:CDS
GACGCGCCTAATTCTGATAG+TGG 0.455329 1_4:+1814675 Msa0142900:CDS
GACGCGCCTAATTCTGATAG+TGG 0.455329 1_4:+1820359 Msa0142900:CDS
AGAAGAAGCCTCGAACTGTT+TGG 0.455763 1_4:+1814832 Msa0142900:CDS
AGAAGAAGCCTCGAACTGTT+TGG 0.455763 1_4:+1820516 Msa0142900:CDS
CTGACTCGGCTGAAGAGTTC+CGG 0.455864 1_4:-1821404 None:intergenic
TGAGCTTGTTGGACTTGAGA+TGG 0.457732 1_4:+1814399 Msa0142900:CDS
TGAGCTTGTTGGACTTGAGA+TGG 0.457732 1_4:+1820083 Msa0142900:CDS
GCAAGAACTCGCATTCCAAT+AGG 0.458411 1_4:-1813658 None:intergenic
GCAAGAACTCGCATTCCAAT+AGG 0.458411 1_4:-1819350 None:intergenic
AGAATTTCCTTCTAACATCA+AGG 0.459500 1_4:-1821578 None:intergenic
GGACTACAATTATGGTGATT+CGG 0.460683 1_4:+1821903 Msa0142900:CDS
ATCAGTTCAAGAATCTTCTT+CGG 0.461313 1_4:-1820844 None:intergenic
CTCATGTGTCATTTCAAGGT+TGG 0.464023 1_4:+1821770 Msa0142900:CDS
AGCTTAAATCCATCCATGTC+TGG 0.471845 1_4:-1814373 None:intergenic
AGCTTAAATCCATCCATGTC+TGG 0.471845 1_4:-1820057 None:intergenic
GCATGGTTAAAAGATTCTCT+TGG 0.472134 1_4:-1821739 None:intergenic
GTTGTTGCGGTCAATCAATT+AGG 0.476132 1_4:+1814879 Msa0142900:CDS
GGGAAACATTCGGCTGGGAC+AGG 0.477461 1_4:+1820386 Msa0142900:CDS
GGGAAAGATTCGGCTGGGAC+AGG 0.479650 1_4:+1814702 Msa0142900:CDS
CTAATTCTGATAGTGGAAAT+GGG 0.482228 1_4:+1814682 Msa0142900:CDS
CTAATTCTGATAGTGGAAAT+GGG 0.482228 1_4:+1820366 Msa0142900:CDS
ATGAAAAGCCATCTAGAAAA+CGG 0.489677 1_4:+1820423 Msa0142900:CDS
TAGCTAAGGCTGCTTCCATA+TGG 0.490232 1_4:-1815469 None:intergenic
GATACATCCTATTTAAGAAG+TGG 0.493596 1_4:+1821235 Msa0142900:CDS
TCCTATTTAAGAAGTGGAGT+TGG 0.497128 1_4:+1821241 Msa0142900:CDS
GATAATAACAATAATCATGA+TGG 0.497207 1_4:+1821793 Msa0142900:CDS
CACTGCTCAAAACGCGATAA+CGG 0.499559 1_4:+1814288 Msa0142900:CDS
CACTGCTCAAAACGCGATAA+CGG 0.499559 1_4:+1819972 Msa0142900:CDS
TTTAGATCCTTTCCATCTGG+TGG 0.500957 1_4:+1821322 Msa0142900:CDS
TCCCTTTACTTGAAAACAGA+AGG 0.502275 1_4:+1821659 Msa0142900:CDS
TAGTGGAAATGGGAAAGATT+CGG 0.502507 1_4:+1814692 Msa0142900:CDS
GTCAATCAATTAGGCATTGA+CGG 0.502566 1_4:+1814888 Msa0142900:CDS
GGAAGACAAACAAGATCATA+TGG 0.510045 1_4:+1821189 Msa0142900:CDS
TAGTGGAAATGGGAAACATT+CGG 0.510168 1_4:+1820376 Msa0142900:CDS
AGCACAATGCAACAACTACC+TGG 0.515145 1_4:+1821700 Msa0142900:CDS
ACATCGCAAGTTTGTTGTTG+CGG 0.516543 1_4:+1814866 Msa0142900:CDS
GGAAATGGGAAACATTCGGC+TGG 0.517134 1_4:+1820380 Msa0142900:CDS
TGCCGATCACATTAGAAGAA+TGG 0.518061 1_4:-1821822 None:intergenic
TACCATTCTTCTAATGTGAT+CGG 0.518616 1_4:+1821820 Msa0142900:CDS
GAAACCTGTTAGACTAAAAG+AGG 0.521944 1_4:+1814593 Msa0142900:CDS
TTGCATAACTTACTTATGAC+AGG 0.526242 1_4:-1814427 None:intergenic
TTGCATAACTTACTTATGAC+AGG 0.526242 1_4:-1820111 None:intergenic
TATTTAAGAAGTGGAGTTGG+AGG 0.527033 1_4:+1821244 Msa0142900:CDS
TGCCGCGAGTTAGGGCCGAT+TGG 0.528037 1_4:-1821468 None:intergenic
TGACAGTGAGGAAGAAAATG+AGG 0.529313 1_4:+1814779 Msa0142900:CDS
GGAAATGGGAAAGATTCGGC+TGG 0.530128 1_4:+1814696 Msa0142900:CDS
TGCATCTGAACTACTAGCTA+AGG 0.539318 1_4:-1815483 None:intergenic
GAAACCTGTTAGACTGAAAG+AGG 0.539886 1_4:+1820277 Msa0142900:CDS
TGTCGAGCAAGAAGGAAACT+TGG 0.540152 1_4:+1821882 Msa0142900:CDS
TATTGGAATGCGAGTTCTTG+CGG 0.540178 1_4:+1813660 Msa0142900:CDS
TATTGGAATGCGAGTTCTTG+CGG 0.540178 1_4:+1819352 Msa0142900:CDS
CTCGGCTGAAGAGTTCCGGC+AGG 0.540951 1_4:-1821400 None:intergenic
TCAGCGGACCAAACAGTTCG+AGG 0.550196 1_4:-1820524 None:intergenic
AAGGATAAGAATGAAGATGA+TGG 0.554575 1_4:+1820446 Msa0142900:CDS
TCAGTGGACCAAACAGTTCG+AGG 0.556377 1_4:-1814840 None:intergenic
CAATGTTCATATGCCAGACA+TGG 0.556391 1_4:+1814360 Msa0142900:CDS
CAATGTTCATATGCCAGACA+TGG 0.556391 1_4:+1820044 Msa0142900:CDS
CTTGAAAACAGAAGGTGCAA+TGG 0.560167 1_4:+1821667 Msa0142900:CDS
AGATTGGCTGCTGAGTTGAT+AGG 0.561182 1_4:-1815507 None:intergenic
ATGAATGGATTGCATCCTGC+CGG 0.561216 1_4:+1821385 Msa0142900:CDS
GAATTTCCTTCTAACATCAA+GGG 0.562420 1_4:-1821577 None:intergenic
ATGGTGATTCGGTACAATGA+AGG 0.563231 1_4:+1821914 Msa0142900:CDS
TAAGAATGAAGATGATGGTG+AGG 0.566326 1_4:+1820451 Msa0142900:CDS
TGATCAGCTAAAGTTCCAAT+CGG 0.568120 1_4:+1821453 Msa0142900:CDS
TGTATCTGAACCACTAGCTA+TGG 0.569493 1_4:-1821218 None:intergenic
TAAGAATGAAGATGACAGTG+AGG 0.570920 1_4:+1814767 Msa0142900:CDS
ATGAATGTTGTCGAGCAAGA+AGG 0.574186 1_4:+1821874 Msa0142900:CDS
TGATGGTGAGGAAGAAAGTG+AGG 0.580573 1_4:+1820463 Msa0142900:CDS
CATAACACCACCAGATGGAA+AGG 0.581151 1_4:-1821329 None:intergenic
GGAAGACAGACAAGACCATA+TGG 0.582020 1_4:+1815454 Msa0142900:CDS
GTTCATATGCCAGACATGGA+TGG 0.584384 1_4:+1814364 Msa0142900:CDS
GTTCATATGCCAGACATGGA+TGG 0.584384 1_4:+1820048 Msa0142900:CDS
TGCTCGACAACATTCATACC+AGG 0.593541 1_4:-1821868 None:intergenic
TTTAAATTATGTGTCTGACT+CGG 0.594323 1_4:-1821418 None:intergenic
TCTCAAGTCCAACAAGCTCA+AGG 0.597253 1_4:-1820080 None:intergenic
AATTCTCAAGACAAACAAGT+AGG 0.598098 1_4:+1821595 Msa0142900:CDS
CAAGACAAACAAGTAGGTGA+AGG 0.598346 1_4:+1821601 Msa0142900:CDS
TGAAAATCTGACAAGGGAGA+AGG 0.601495 1_4:+1820873 Msa0142900:CDS
AATCCAAATGATGTTCAAAG+AGG 0.602398 1_4:+1821490 Msa0142900:CDS
TTCCAATCGGCCCTAACTCG+CGG 0.602702 1_4:+1821466 Msa0142900:CDS
ACACCGCAAGTTTGTTGCTG+CGG 0.610830 1_4:+1820550 Msa0142900:CDS
TGCGAATGATGATCCAAAGA+TGG 0.615837 1_4:+1814530 Msa0142900:CDS
TGCGAATGATGATCCAAAGA+TGG 0.615837 1_4:+1820214 Msa0142900:CDS
CTACTCATAACACCACCAGA+TGG 0.616853 1_4:-1821334 None:intergenic
GAAATGGGAAACATTCGGCT+GGG 0.620073 1_4:+1820381 Msa0142900:CDS
AAAGCCATCTAGAAAACGGA+AGG 0.622229 1_4:+1820427 Msa0142900:CDS
GGTCTTGTCTGTCTTCCGCA+CGG 0.622559 1_4:-1815448 None:intergenic
GAAATGGGAAAGATTCGGCT+GGG 0.627002 1_4:+1814697 Msa0142900:CDS
ATAACTTACTTATGACAGGT+AGG 0.629417 1_4:-1814423 None:intergenic
ATAACTTACTTATGACAGGT+AGG 0.629417 1_4:-1820107 None:intergenic
GATCCAAAGATGGTGATGAA+AGG 0.637771 1_4:+1814540 Msa0142900:CDS
GATCCAAAGATGGTGATGAA+AGG 0.637771 1_4:+1820224 Msa0142900:CDS
ACACATGAGGCATAGCAGCA+TGG 0.642777 1_4:-1821756 None:intergenic
CTCCAAAGGTGTCAATACCA+TGG 0.650196 1_4:+1813724 Msa0142900:CDS
CTCCAAAGGTGTCAATACCA+TGG 0.650196 1_4:+1819416 Msa0142900:CDS
ATGGCAGCAGCCATAGCTAG+TGG 0.659987 1_4:+1821208 Msa0142900:CDS
TAACCGCAGCAACAAACTTG+CGG 0.661176 1_4:-1820553 None:intergenic
AAACTTGCGATGTAAATCAG+TGG 0.662856 1_4:-1814856 None:intergenic
AAACTTGCGGTGTAAATCAG+CGG 0.665866 1_4:-1820540 None:intergenic
CAACCTTGAAATGACACATG+AGG 0.667024 1_4:-1821769 None:intergenic
TTGTGAAACTGAAATTTGGG+AGG 0.670570 1_4:-1821549 None:intergenic
TGAATGTTGAAAATCTGACA+AGG 0.702505 1_4:+1820866 Msa0142900:CDS
GAATGTTGAAAATCTGACAA+GGG 0.715396 1_4:+1820867 Msa0142900:CDS
GTGATGAAAGGAATTGAACA+TGG 0.742148 1_4:+1814552 Msa0142900:CDS
GTGATGAAAGGAATTGAACA+TGG 0.742148 1_4:+1820236 Msa0142900:CDS
TCTACAAAGAATTAGCCGTG+CGG 0.798557 1_4:+1815433 Msa0142900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTGAAATATTAAAGAT+TGG + chr1_4:1813788-1813807 Msa0142900:intron 10.0%
!!! AATTTTATTTGATATTGTTT+AGG + chr1_4:1814016-1814035 Msa0142900:intron 10.0%
!!! AATGATATTAATTTTAGTTA+TGG + chr1_4:1814243-1814262 Msa0142900:intron 10.0%
!! TTAATTAAAAAAATTCAAAG+TGG + chr1_4:1816393-1816412 Msa0142900:intron 10.0%
!! TAATTAAAAAAATTCAAAGT+GGG + chr1_4:1816394-1816413 Msa0142900:intron 10.0%
!! TATATATATATATATTGTGT+GGG - chr1_4:1816654-1816673 None:intergenic 10.0%
!! ATATATATATATATATTGTG+TGG - chr1_4:1816655-1816674 None:intergenic 10.0%
!!! TTTTAAATAATTAATAGTAG+TGG + chr1_4:1818543-1818562 Msa0142900:intron 10.0%
!!! TTATTTTGAAATATTAAAGA+TGG + chr1_4:1813787-1813806 Msa0142900:intron 10.0%
!!! TATTTTGAAATATTAAAGAT+GGG + chr1_4:1813788-1813807 Msa0142900:intron 10.0%
!!! ATTATTATTTTCAATAAAGT+TGG + chr1_4:1819603-1819622 Msa0142900:intron 10.0%
!!! AATTTTATTTGATATTGTTT+AGG + chr1_4:1814016-1814035 Msa0142900:intron 10.0%
!!! AATGATATTTATTTTAGTTA+TGG + chr1_4:1819927-1819946 Msa0142900:intron 10.0%
!! AAAAAACAAGATTAAAATCA+AGG - chr1_4:1813815-1813834 None:intergenic 15.0%
!!! ATTATTATTTTCAATGAAGT+TGG + chr1_4:1813909-1813928 Msa0142900:intron 15.0%
!! TATCAATAATATAAGATTGA+AGG - chr1_4:1814455-1814474 None:intergenic 15.0%
!!! GAAATTTGACTTTTTTTTTT+TGG + chr1_4:1815822-1815841 Msa0142900:intron 15.0%
!! TTTCAAAAATCATATACATT+TGG - chr1_4:1816069-1816088 None:intergenic 15.0%
!!! ATATGATTTTTGAAAAATAG+AGG + chr1_4:1816074-1816093 Msa0142900:intron 15.0%
!!! TATGATTTTTGAAAAATAGA+GGG + chr1_4:1816075-1816094 Msa0142900:intron 15.0%
!! ATACGTAACAAAAAAAAAAT+TGG + chr1_4:1816232-1816251 Msa0142900:intron 15.0%
!! TACGTAACAAAAAAAAAATT+GGG + chr1_4:1816233-1816252 Msa0142900:intron 15.0%
!!! CAAGTTAACAAATTTTTTTT+GGG + chr1_4:1816431-1816450 Msa0142900:intron 15.0%
!!! ATTTTTTTGTCAAAATGAAA+AGG - chr1_4:1816575-1816594 None:intergenic 15.0%
!!! ATTTTTTTGTCAAAATGAAA+AGG + chr1_4:1816575-1816594 Msa0142900:intron 15.0%
!!! ATAATTTTGTTTTAAGTAAG+AGG + chr1_4:1816682-1816701 Msa0142900:intron 15.0%
!!! TTTTTACTATGATATTTACT+TGG + chr1_4:1816791-1816810 Msa0142900:intron 15.0%
!!! ACTTTTTTTTTTAAGCAAAA+TGG - chr1_4:1817953-1817972 None:intergenic 15.0%
!! TTATAAAAATCATTAACATC+AGG - chr1_4:1818220-1818239 None:intergenic 15.0%
!!! AATAAGATTTTTTTTTTGTC+AGG - chr1_4:1818754-1818773 None:intergenic 15.0%
!!! AAATATTAAGGATGTTTTTA+TGG - chr1_4:1819068-1819087 None:intergenic 15.0%
!! AATAATCACAACAAATATTA+AGG - chr1_4:1819080-1819099 None:intergenic 15.0%
!! AAGTATATATACAAAAAAGA+AGG - chr1_4:1819201-1819220 None:intergenic 15.0%
!!! CAAAAAAATAGTGATTTTTA+AGG - chr1_4:1819300-1819319 None:intergenic 15.0%
!! AAAAAACAAGATTAAAATCA+AGG - chr1_4:1813815-1813834 None:intergenic 15.0%
!! TATCAATAATATAAGATTGA+AGG - chr1_4:1814455-1814474 None:intergenic 15.0%
!!! TTTTTAGTAAAGAATATTTG+AGG - chr1_4:1820743-1820762 None:intergenic 15.0%
!! TAATTGAATTTAACAACATA+TGG + chr1_4:1821029-1821048 Msa0142900:intron 15.0%
!! AAATCTAATGATATATAGCT+AGG + chr1_4:1813843-1813862 Msa0142900:intron 20.0%
!! AATCTAATGATATATAGCTA+GGG + chr1_4:1813844-1813863 Msa0142900:intron 20.0%
!! CCTAAAAAAATATTTAGTCA+CGG - chr1_4:1815780-1815799 None:intergenic 20.0%
!! ATACAAGAGAAACAATAAAA+AGG - chr1_4:1815930-1815949 None:intergenic 20.0%
!!! ATGATTTTTGAAAAATAGAG+GGG + chr1_4:1816076-1816095 Msa0142900:intron 20.0%
!!! TACTCAATTATTTTAGCTAT+CGG - chr1_4:1816172-1816191 None:intergenic 20.0%
!! ACGTAACAAAAAAAAAATTG+GGG + chr1_4:1816234-1816253 Msa0142900:intron 20.0%
!!! AAGTGCAAGTTTTATAATTT+AGG - chr1_4:1816295-1816314 None:intergenic 20.0%
!!! AAAACTTGCACTTTTTTATT+TGG + chr1_4:1816302-1816321 Msa0142900:intron 20.0%
!! AGCATTCTATAAAAAACATT+TGG - chr1_4:1816352-1816371 None:intergenic 20.0%
!!! GCAAGTTAACAAATTTTTTT+TGG + chr1_4:1816430-1816449 Msa0142900:intron 20.0%
!! AATATTCATTCATTAAGGTA+TGG - chr1_4:1816723-1816742 None:intergenic 20.0%
!! AGTACAATATTCATTCATTA+AGG - chr1_4:1816728-1816747 None:intergenic 20.0%
!! ACGATATTTATTCATTCAAA+TGG - chr1_4:1816755-1816774 None:intergenic 20.0%
!! TAAAGATTGAAATGGATAAT+TGG - chr1_4:1817581-1817600 None:intergenic 20.0%
!! AACAATCATAAAGATTGAAA+TGG - chr1_4:1817589-1817608 None:intergenic 20.0%
!! TCAATCTTTATGATTGTTAT+TGG + chr1_4:1817591-1817610 Msa0142900:intron 20.0%
!!! TATTTTTTTCTTCTTCAGAT+TGG + chr1_4:1818087-1818106 Msa0142900:intron 20.0%
!!! TATAAAGAAGATTAAGCTTT+TGG + chr1_4:1818235-1818254 Msa0142900:intron 20.0%
!!! TAACTTTTTGTTCAAAATCA+TGG - chr1_4:1818305-1818324 None:intergenic 20.0%
!!! ATGATTTTGAACAAAAAGTT+AGG + chr1_4:1818304-1818323 Msa0142900:intron 20.0%
!! TTAGCAAAAATATTTGATTG+TGG + chr1_4:1818773-1818792 Msa0142900:intron 20.0%
!!! ATTACAGCTTTAAACATTTA+TGG + chr1_4:1818948-1818967 Msa0142900:intron 20.0%
!! TGGTTGGAAAATAATATTTA+AGG + chr1_4:1819036-1819055 Msa0142900:intron 20.0%
!! AAATCTAATGATATATAGCT+AGG + chr1_4:1813843-1813862 Msa0142900:intron 20.0%
!! AATCTAATGATATATAGCTA+GGG + chr1_4:1813844-1813863 Msa0142900:intron 20.0%
!!! TAATTGATTTCTACAAGTAT+TGG - chr1_4:1819674-1819693 None:intergenic 20.0%
!!! ATTTTGATAAACTGGAAAAA+AGG - chr1_4:1820677-1820696 None:intergenic 20.0%
!! ATCTAAAAGGATTGTTATAA+TGG - chr1_4:1821309-1821328 None:intergenic 20.0%
!! GATAATAACAATAATCATGA+TGG + chr1_4:1821793-1821812 Msa0142900:CDS 20.0%
!! TAATTGATTTCTACAAGCAT+TGG - chr1_4:1813985-1814004 None:intergenic 25.0%
! ATGAAAAACCATCTAGAAAA+AGG + chr1_4:1814739-1814758 Msa0142900:CDS 25.0%
! CATGATATTAATCTCAACAT+TGG - chr1_4:1814955-1814974 None:intergenic 25.0%
!! GCTAAACATAAGTATTTTTC+GGG - chr1_4:1815033-1815052 None:intergenic 25.0%
!! GGCTAAACATAAGTATTTTT+CGG - chr1_4:1815034-1815053 None:intergenic 25.0%
!!! ATCAGTTCAAGAATCTTTTT+TGG - chr1_4:1815127-1815146 None:intergenic 25.0%
!!! TCCAAATTTTAAAATCTGAG+GGG - chr1_4:1815605-1815624 None:intergenic 25.0%
!!! CTCCAAATTTTAAAATCTGA+GGG - chr1_4:1815606-1815625 None:intergenic 25.0%
!!! ACTCCAAATTTTAAAATCTG+AGG - chr1_4:1815607-1815626 None:intergenic 25.0%
!!! GTGTGTTTTTTTTTTTGTTG+TGG + chr1_4:1815625-1815644 Msa0142900:intron 25.0%
!!! GTTTTTTTTTTTGTTGTGGT+CGG + chr1_4:1815629-1815648 Msa0142900:intron 25.0%
!!! TTTTTTTTTTTGTTGTGGTC+GGG + chr1_4:1815630-1815649 Msa0142900:intron 25.0%
! ACAATGCATAATATATGCAA+AGG - chr1_4:1815669-1815688 None:intergenic 25.0%
!!! TTTAGTTTTGTCGTTTAGAA+AGG + chr1_4:1815731-1815750 Msa0142900:intron 25.0%
! AAAGGAAAAGAAATTAACCA+TGG + chr1_4:1815749-1815768 Msa0142900:intron 25.0%
!!! CCGTGACTAAATATTTTTTT+AGG + chr1_4:1815777-1815796 Msa0142900:intron 25.0%
! TCATATACATTTGGATAGTT+GGG - chr1_4:1816060-1816079 None:intergenic 25.0%
! ATCATATACATTTGGATAGT+TGG - chr1_4:1816061-1816080 None:intergenic 25.0%
! CGTAACAAAAAAAAAATTGG+GGG + chr1_4:1816235-1816254 Msa0142900:intron 25.0%
! AAACCAACCAAAAAATATGA+AGG + chr1_4:1816269-1816288 Msa0142900:intron 25.0%
!!! ATTTAGGCCTTCATATTTTT+TGG - chr1_4:1816279-1816298 None:intergenic 25.0%
!! CTATAAAAAACATTTGGAGT+AGG - chr1_4:1816346-1816365 None:intergenic 25.0%
! CTTAGAGAGAGAAAAAAAAT+CGG - chr1_4:1816834-1816853 None:intergenic 25.0%
! ATATTCAGAGAATCAAGTTT+AGG - chr1_4:1817497-1817516 None:intergenic 25.0%
! GATAAAAAAGGGTTCATTAA+AGG - chr1_4:1817710-1817729 None:intergenic 25.0%
!! TCTTCATTCTTTTTGTAACT+TGG + chr1_4:1817744-1817763 Msa0142900:intron 25.0%
!! GTTTTTGTTAGGATTGATTA+GGG + chr1_4:1817816-1817835 Msa0142900:intron 25.0%
!!! TATCTTGTTTTATTCCCATT+TGG + chr1_4:1817859-1817878 Msa0142900:intron 25.0%
!!! ATCTTGTTTTATTCCCATTT+GGG + chr1_4:1817860-1817879 Msa0142900:intron 25.0%
! GAAAAAAATAGAACATGAAG+AGG - chr1_4:1818077-1818096 None:intergenic 25.0%
! TTATTTATTGTTTGGTCATG+AGG + chr1_4:1818342-1818361 Msa0142900:intron 25.0%
! ATGACATATATGAACAATGT+CGG + chr1_4:1818421-1818440 Msa0142900:intron 25.0%
! GACAATGCATAATATATACA+AGG + chr1_4:1818713-1818732 Msa0142900:intron 25.0%
! TCAAACAAAAACACAAGTAT+TGG + chr1_4:1819016-1819035 Msa0142900:intron 25.0%
!!! GTTGTGATTATTTTTCTCAT+TGG + chr1_4:1819088-1819107 Msa0142900:intron 25.0%
! TGGTTAGTATTTAACTAGAA+AGG + chr1_4:1819108-1819127 Msa0142900:intron 25.0%
! TAGTATTTAACTAGAAAGGA+AGG + chr1_4:1819112-1819131 Msa0142900:intron 25.0%
! TCTAGCATATGCATAAATAT+AGG - chr1_4:1819584-1819603 None:intergenic 25.0%
!!! GCACAAATATTTTGATAAAC+TGG - chr1_4:1820685-1820704 None:intergenic 25.0%
! GAAGTCTTCAAATAATACAT+TGG - chr1_4:1820721-1820740 None:intergenic 25.0%
! CTGCAGAAAAATTAAAAAAC+AGG - chr1_4:1815399-1815418 None:intergenic 25.0%
! TCTAAAAAGAATTAGTTGTG+CGG + chr1_4:1821168-1821187 Msa0142900:CDS 25.0%
! TTTAAATTATGTGTCTGACT+CGG - chr1_4:1821421-1821440 None:intergenic 25.0%
! TGTTTGTGAAACTGAAATTT+GGG - chr1_4:1821555-1821574 None:intergenic 25.0%
! TTGTTTGTGAAACTGAAATT+TGG - chr1_4:1821556-1821575 None:intergenic 25.0%
ATGAATGATCAGTTTCCTAT+TGG + chr1_4:1813643-1813662 Msa0142900:CDS 30.0%
! TAGAACATGTCTCAAGATTT+TGG + chr1_4:1813693-1813712 Msa0142900:CDS 30.0%
! ATGATATATAGCTAGGGTTT+TGG + chr1_4:1813850-1813869 Msa0142900:intron 30.0%
TTCTCGATTCTTTCAAAGAT+TGG + chr1_4:1814069-1814088 Msa0142900:intron 30.0%
! TATGAACATTGCTGATTACT+AGG - chr1_4:1814351-1814370 None:intergenic 30.0%
ATAACTTACTTATGACAGGT+AGG - chr1_4:1814426-1814445 None:intergenic 30.0%
TTGCATAACTTACTTATGAC+AGG - chr1_4:1814430-1814449 None:intergenic 30.0%
! TAAAAGAGGTACAGATCATT+TGG + chr1_4:1814607-1814626 Msa0142900:CDS 30.0%
!! CTAATTCTGATAGTGGAAAT+GGG + chr1_4:1814682-1814701 Msa0142900:CDS 30.0%
AAAACCATCTAGAAAAAGGA+AGG + chr1_4:1814743-1814762 Msa0142900:CDS 30.0%
! TTATCCTTCCTTTTTCTAGA+TGG - chr1_4:1814750-1814769 None:intergenic 30.0%
!!! TTTTTCGGGAAGAATATTTG+AGG - chr1_4:1815019-1815038 None:intergenic 30.0%
AATCGGAAAAATTCATAGCA+TGG - chr1_4:1815055-1815074 None:intergenic 30.0%
TGAGAAAAACACTTCAGAAT+CGG - chr1_4:1815072-1815091 None:intergenic 30.0%
TGAATGTTGAAAATCTGACA+AGG + chr1_4:1815146-1815165 Msa0142900:intron 30.0%
GAATGTTGAAAATCTGACAA+GGG + chr1_4:1815147-1815166 Msa0142900:intron 30.0%
!!! AAATTTTAAAATCTGAGGGG+AGG - chr1_4:1815602-1815621 None:intergenic 30.0%
!!! TCCCCTCAGATTTTAAAATT+TGG + chr1_4:1815601-1815620 Msa0142900:intron 30.0%
!! TCGATTACTTTAGAATCTCT+TGG - chr1_4:1816009-1816028 None:intergenic 30.0%
! CATTTGGAGTAGGAATAATT+GGG - chr1_4:1816336-1816355 None:intergenic 30.0%
! ACATTTGGAGTAGGAATAAT+TGG - chr1_4:1816337-1816356 None:intergenic 30.0%
TAAAAACATGAAGGTTACGT+TGG - chr1_4:1816611-1816630 None:intergenic 30.0%
! AACGTAACCTTCATGTTTTT+AGG + chr1_4:1816610-1816629 Msa0142900:intron 30.0%
!!! TAACCTTCATGTTTTTAGGT+TGG + chr1_4:1816614-1816633 Msa0142900:intron 30.0%
CTTGATTCTCTGAATATTCT+AGG + chr1_4:1817500-1817519 Msa0142900:intron 30.0%
AATGGATAATTGGACAATAC+CGG - chr1_4:1817571-1817590 None:intergenic 30.0%
!! TTTATACTTGCTGTTTGTTC+AGG + chr1_4:1817634-1817653 Msa0142900:intron 30.0%
!! TTATACTTGCTGTTTGTTCA+GGG + chr1_4:1817635-1817654 Msa0142900:intron 30.0%
!!! ATGAACCCTTTTTTATCCTT+CGG + chr1_4:1817713-1817732 Msa0142900:intron 30.0%
AAAGTCCGAAGGATAAAAAA+GGG - chr1_4:1817721-1817740 None:intergenic 30.0%
! GGTTTTTGTTAGGATTGATT+AGG + chr1_4:1817815-1817834 Msa0142900:intron 30.0%
AAAACAAGATAATACAGACC+CGG - chr1_4:1817850-1817869 None:intergenic 30.0%
ATGACCCAAAATTCTAATTG+TGG - chr1_4:1818403-1818422 None:intergenic 30.0%
CATAATATATACAAGGTCTG+AGG + chr1_4:1818720-1818739 Msa0142900:intron 30.0%
!! GTAAATTTTAGTGTGCTGTA+AGG + chr1_4:1818836-1818855 Msa0142900:intron 30.0%
AGAGTGATGTGGAAAATATT+TGG + chr1_4:1818908-1818927 Msa0142900:intron 30.0%
!! ACAAAAACACAAGTATTGGT+TGG + chr1_4:1819020-1819039 Msa0142900:intron 30.0%
ATGAATGATCAGTTTCCTAT+TGG + chr1_4:1813643-1813662 Msa0142900:CDS 30.0%
! TAGAACATGTCTCAAGATTT+TGG + chr1_4:1813693-1813712 Msa0142900:CDS 30.0%
! ATGATATATAGCTAGGGTTT+TGG + chr1_4:1813850-1813869 Msa0142900:intron 30.0%
! TTGTTGCTTCTTTCAAAGAT+TGG + chr1_4:1819758-1819777 Msa0142900:intron 30.0%
ACATAAGATCACCAAAGATT+AGG - chr1_4:1819833-1819852 None:intergenic 30.0%
! TATGAACATTGCTGATTACT+AGG - chr1_4:1814351-1814370 None:intergenic 30.0%
ATAACTTACTTATGACAGGT+AGG - chr1_4:1814426-1814445 None:intergenic 30.0%
TTGCATAACTTACTTATGAC+AGG - chr1_4:1814430-1814449 None:intergenic 30.0%
!! CTAATTCTGATAGTGGAAAT+GGG + chr1_4:1814682-1814701 Msa0142900:CDS 30.0%
ATGAAAAGCCATCTAGAAAA+CGG + chr1_4:1820423-1820442 Msa0142900:CDS 30.0%
AAGGATAAGAATGAAGATGA+TGG + chr1_4:1814762-1814781 Msa0142900:CDS 30.0%
TGAGAAAAACACTTCAGAAT+CGG - chr1_4:1815072-1815091 None:intergenic 30.0%
ATCAGTTCAAGAATCTTCTT+CGG - chr1_4:1820847-1820866 None:intergenic 30.0%
TGAATGTTGAAAATCTGACA+AGG + chr1_4:1815146-1815165 Msa0142900:intron 30.0%
GAATGTTGAAAATCTGACAA+GGG + chr1_4:1815147-1815166 Msa0142900:intron 30.0%
!! AAGAGATAAGAAAAAGTACC+TGG - chr1_4:1820912-1820931 None:intergenic 30.0%
GATACATCCTATTTAAGAAG+TGG + chr1_4:1821235-1821254 Msa0142900:CDS 30.0%
CCATTCATATTCACATTAGT+AGG - chr1_4:1821373-1821392 None:intergenic 30.0%
CCTACTAATGTGAATATGAA+TGG + chr1_4:1821370-1821389 Msa0142900:CDS 30.0%
AATCCAAATGATGTTCAAAG+AGG + chr1_4:1821490-1821509 Msa0142900:CDS 30.0%
ATACCTCTTTGAACATCATT+TGG - chr1_4:1821496-1821515 None:intergenic 30.0%
!! TTATTGGTCATGTTTTGGAT+AGG - chr1_4:1821529-1821548 None:intergenic 30.0%
GAATTTCCTTCTAACATCAA+GGG - chr1_4:1821580-1821599 None:intergenic 30.0%
AGAATTTCCTTCTAACATCA+AGG - chr1_4:1821581-1821600 None:intergenic 30.0%
AATTCTCAAGACAAACAAGT+AGG + chr1_4:1821595-1821614 Msa0142900:CDS 30.0%
!!! ACCTTCTGTTTTCAAGTAAA+GGG - chr1_4:1821663-1821682 None:intergenic 30.0%
TACCATTCTTCTAATGTGAT+CGG + chr1_4:1821820-1821839 Msa0142900:CDS 30.0%
!! TTTTGGAGAAACTTCTCCAA+AGG + chr1_4:1813710-1813729 Msa0142900:CDS 35.0%
! TCTTTTGTGTGCCTAATCTT+TGG + chr1_4:1814131-1814150 Msa0142900:intron 35.0%
ACGTAAGATCACCAAAGATT+AGG - chr1_4:1814145-1814164 None:intergenic 35.0%
TTTAAGCTTCTTGAGCTTGT+TGG + chr1_4:1814388-1814407 Msa0142900:CDS 35.0%
ATTCCTTTCATCACCATCTT+TGG - chr1_4:1814546-1814565 None:intergenic 35.0%
GTGATGAAAGGAATTGAACA+TGG + chr1_4:1814552-1814571 Msa0142900:CDS 35.0%
GAAACCTGTTAGACTAAAAG+AGG + chr1_4:1814593-1814612 Msa0142900:CDS 35.0%
! TGTACCTCTTTTAGTCTAAC+AGG - chr1_4:1814600-1814619 None:intergenic 35.0%
CCATTTCCACTATCAGAATT+AGG - chr1_4:1814684-1814703 None:intergenic 35.0%
!! CCTAATTCTGATAGTGGAAA+TGG + chr1_4:1814681-1814700 Msa0142900:CDS 35.0%
TAGTGGAAATGGGAAAGATT+CGG + chr1_4:1814692-1814711 Msa0142900:CDS 35.0%
TAAGAATGAAGATGACAGTG+AGG + chr1_4:1814767-1814786 Msa0142900:CDS 35.0%
AAACTTGCGATGTAAATCAG+TGG - chr1_4:1814859-1814878 None:intergenic 35.0%
!! GTCAATCAATTAGGCATTGA+CGG + chr1_4:1814888-1814907 Msa0142900:CDS 35.0%
AGTTGTTATCTTACTTGCAG+AGG + chr1_4:1815096-1815115 Msa0142900:intron 35.0%
!! AGCATAAAAGTACCTGAAGA+TGG - chr1_4:1815186-1815205 None:intergenic 35.0%
! TATGTGAGACTGAGAAGTAT+GGG - chr1_4:1815559-1815578 None:intergenic 35.0%
ATATGTGAGACTGAGAAGTA+TGG - chr1_4:1815560-1815579 None:intergenic 35.0%
AAACGTTGTCTTCGATGATA+AGG + chr1_4:1815885-1815904 Msa0142900:intron 35.0%
AACGTTGTCTTCGATGATAA+GGG + chr1_4:1815886-1815905 Msa0142900:intron 35.0%
TTGACACTAGAATACCTTCA+CGG - chr1_4:1816032-1816051 None:intergenic 35.0%
TACATTTGGATAGTTGGGTT+GGG - chr1_4:1816055-1816074 None:intergenic 35.0%
ATACATTTGGATAGTTGGGT+TGG - chr1_4:1816056-1816075 None:intergenic 35.0%
!!! AGGCCTTCATATTTTTTGGT+TGG - chr1_4:1816275-1816294 None:intergenic 35.0%
ATTGTGTGGGTTTACTAACT+TGG - chr1_4:1816641-1816660 None:intergenic 35.0%
!!! ACTTGGTTACAAGTTTTGAG+AGG + chr1_4:1816808-1816827 Msa0142900:intron 35.0%
TTGTGAATTCAGATCCGAAT+TGG + chr1_4:1817158-1817177 Msa0142900:intron 35.0%
TGTTTCAGATCAGAGATTTC+AGG + chr1_4:1817363-1817382 Msa0142900:intron 35.0%
TTTAAAGGAACAGACCCTTT+CGG - chr1_4:1817434-1817453 None:intergenic 35.0%
!! TGTTCCTTTAAAACCAGTGA+GGG + chr1_4:1817442-1817461 Msa0142900:intron 35.0%
!! TATACTTGCTGTTTGTTCAG+GGG + chr1_4:1817636-1817655 Msa0142900:intron 35.0%
AAGGGTTCATTAAAGGTGAA+TGG - chr1_4:1817703-1817722 None:intergenic 35.0%
GAAAGTCCGAAGGATAAAAA+AGG - chr1_4:1817722-1817741 None:intergenic 35.0%
CAAAAACCAACACTTCTCAA+AGG - chr1_4:1817803-1817822 None:intergenic 35.0%
!!! GAGAAGTGTTGGTTTTTGTT+AGG + chr1_4:1817805-1817824 Msa0142900:intron 35.0%
! ATTGATTAGGGTTGATCTAC+CGG + chr1_4:1817828-1817847 Msa0142900:intron 35.0%
AAAAACGAGATACAGAGACT+GGG - chr1_4:1817913-1817932 None:intergenic 35.0%
AAAAAACGAGATACAGAGAC+TGG - chr1_4:1817914-1817933 None:intergenic 35.0%
! AATTAGAAGGGAAGTACACA+AGG - chr1_4:1818019-1818038 None:intergenic 35.0%
TTGTGTACTTCCCTTCTAAT+TGG + chr1_4:1818018-1818037 Msa0142900:intron 35.0%
! TCGGCCACAATTAGAATTTT+GGG + chr1_4:1818396-1818415 Msa0142900:intron 35.0%
GGAATGGAGAGACTAATAAA+TGG - chr1_4:1818491-1818510 None:intergenic 35.0%
TCTTTATCTCTCCAAATGGA+AGG - chr1_4:1818512-1818531 None:intergenic 35.0%
TGTGTCTTTATCTCTCCAAA+TGG - chr1_4:1818516-1818535 None:intergenic 35.0%
TATCAACTGAGTTAAGCTCA+CGG - chr1_4:1818691-1818710 None:intergenic 35.0%
! TGAGCTTAACTCAGTTGATA+AGG + chr1_4:1818691-1818710 Msa0142900:intron 35.0%
TTACGTGAGCTGTAAAAGAA+AGG + chr1_4:1818868-1818887 Msa0142900:intron 35.0%
TACGTGAGCTGTAAAAGAAA+GGG + chr1_4:1818869-1818888 Msa0142900:intron 35.0%
AAATTTCGTGTAGAGTGATG+TGG + chr1_4:1818897-1818916 Msa0142900:intron 35.0%
GAAACAATGTAAGAGGATTC+TGG - chr1_4:1819153-1819172 None:intergenic 35.0%
ACTCTCCATAGTAACTTTCA+TGG + chr1_4:1819173-1819192 Msa0142900:intron 35.0%
AGGTACCATGAAAGTTACTA+TGG - chr1_4:1819181-1819200 None:intergenic 35.0%
!! TTTTGGAGAAACTTCTCCAA+AGG + chr1_4:1813710-1813729 Msa0142900:CDS 35.0%
!! TGATTTCTACAAGTATTGGC+TGG - chr1_4:1819670-1819689 None:intergenic 35.0%
ATCTTTGTGTGCCTAATCTT+TGG + chr1_4:1819819-1819838 Msa0142900:intron 35.0%
!! GGTGATCTTATGTTGTTTCT+TGG + chr1_4:1819840-1819859 Msa0142900:intron 35.0%
ATTCCTTTCATCACCATCTT+TGG - chr1_4:1814546-1814565 None:intergenic 35.0%
GTGATGAAAGGAATTGAACA+TGG + chr1_4:1814552-1814571 Msa0142900:CDS 35.0%
! TGAAAGAGGTACAGATCATT+TGG + chr1_4:1820291-1820310 Msa0142900:CDS 35.0%
CCATTTCCACTATCAGAATT+AGG - chr1_4:1814684-1814703 None:intergenic 35.0%
!! CCTAATTCTGATAGTGGAAA+TGG + chr1_4:1814681-1814700 Msa0142900:CDS 35.0%
TAGTGGAAATGGGAAACATT+CGG + chr1_4:1820376-1820395 Msa0142900:CDS 35.0%
! TTATCCTTCCGTTTTCTAGA+TGG - chr1_4:1820434-1820453 None:intergenic 35.0%
! TAAGAATGAAGATGATGGTG+AGG + chr1_4:1820451-1820470 Msa0142900:CDS 35.0%
! TTTTGCGCATTGAAGAAAGA+GGG - chr1_4:1820606-1820625 None:intergenic 35.0%
! TTTTTGCGCATTGAAGAAAG+AGG - chr1_4:1820607-1820626 None:intergenic 35.0%
AATCGGAAAAATTCGTAGCA+TGG - chr1_4:1820779-1820798 None:intergenic 35.0%
TGATAGTTGTTATCTTGCAG+AGG + chr1_4:1820816-1820835 Msa0142900:intron 35.0%
!! TAAGAAAAAGTACCTGGAGA+TGG - chr1_4:1820906-1820925 None:intergenic 35.0%
GGAAGACAAACAAGATCATA+TGG + chr1_4:1821189-1821208 Msa0142900:CDS 35.0%
TCCTATTTAAGAAGTGGAGT+TGG + chr1_4:1821241-1821260 Msa0142900:CDS 35.0%
TCCAACTCCACTTCTTAAAT+AGG - chr1_4:1821245-1821264 None:intergenic 35.0%
TATTTAAGAAGTGGAGTTGG+AGG + chr1_4:1821244-1821263 Msa0142900:CDS 35.0%
GGACATTTGCATACATTGAA+TGG + chr1_4:1821265-1821284 Msa0142900:CDS 35.0%
TGATCAGCTAAAGTTCCAAT+CGG + chr1_4:1821453-1821472 Msa0142900:CDS 35.0%
ACTGAAATTTGGGAGGTTAT+TGG - chr1_4:1821545-1821564 None:intergenic 35.0%
TTGTGAAACTGAAATTTGGG+AGG - chr1_4:1821552-1821571 None:intergenic 35.0%
AACAATCCCTTGATGTTAGA+AGG + chr1_4:1821571-1821590 Msa0142900:CDS 35.0%
TCCCTTTACTTGAAAACAGA+AGG + chr1_4:1821659-1821678 Msa0142900:CDS 35.0%
!!! CACCTTCTGTTTTCAAGTAA+AGG - chr1_4:1821664-1821683 None:intergenic 35.0%
GCATGGTTAAAAGATTCTCT+TGG - chr1_4:1821742-1821761 None:intergenic 35.0%
!! TCATGTGTCATTTCAAGGTT+GGG + chr1_4:1821771-1821790 Msa0142900:CDS 35.0%
GGAAACTTGGACTACAATTA+TGG + chr1_4:1821895-1821914 Msa0142900:CDS 35.0%
GGACTACAATTATGGTGATT+CGG + chr1_4:1821903-1821922 Msa0142900:CDS 35.0%
TATTGGAATGCGAGTTCTTG+CGG + chr1_4:1813660-1813679 Msa0142900:CDS 40.0%
!! TACCATGGTATTGACACCTT+TGG - chr1_4:1813729-1813748 None:intergenic 40.0%
!! GTTGATGATGAAGCATACCA+TGG - chr1_4:1813744-1813763 None:intergenic 40.0%
!!! CTAGGGTTTTGGCTAAGTTT+TGG + chr1_4:1813861-1813880 Msa0142900:intron 40.0%
!! GGTGATCTTACGTTGTTTCT+TGG + chr1_4:1814152-1814171 Msa0142900:intron 40.0%
CAATGTTCATATGCCAGACA+TGG + chr1_4:1814360-1814379 Msa0142900:CDS 40.0%
AGCTTAAATCCATCCATGTC+TGG - chr1_4:1814376-1814395 None:intergenic 40.0%
TGCGAATGATGATCCAAAGA+TGG + chr1_4:1814530-1814549 Msa0142900:CDS 40.0%
! GATCCAAAGATGGTGATGAA+AGG + chr1_4:1814540-1814559 Msa0142900:CDS 40.0%
TCATTTGGCAGCATGTAATC+AGG + chr1_4:1814622-1814641 Msa0142900:CDS 40.0%
TGACAGTGAGGAAGAAAATG+AGG + chr1_4:1814779-1814798 Msa0142900:CDS 40.0%
!! ACATCGCAAGTTTGTTGTTG+CGG + chr1_4:1814866-1814885 Msa0142900:CDS 40.0%
GTTGTTGCGGTCAATCAATT+AGG + chr1_4:1814879-1814898 Msa0142900:CDS 40.0%
ATCTGCGCATTGAAGAAAGA+GGG - chr1_4:1814923-1814942 None:intergenic 40.0%
AATCTGCGCATTGAAGAAAG+AGG - chr1_4:1814924-1814943 None:intergenic 40.0%
TGAAAATCTGACAAGGGAGA+AGG + chr1_4:1815153-1815172 Msa0142900:intron 40.0%
!! TAAAAGTACCTGAAGATGGC+TGG - chr1_4:1815182-1815201 None:intergenic 40.0%
ATTAACAGTGTCCTTGTGTC+AGG - chr1_4:1815256-1815275 None:intergenic 40.0%
TGACACAAGGACACTGTTAA+TGG + chr1_4:1815255-1815274 Msa0142900:intron 40.0%
TGTTGATGTCGTGTTAGTGT+CGG + chr1_4:1815313-1815332 Msa0142900:intron 40.0%
TCTACAAAGAATTAGCCGTG+CGG + chr1_4:1815433-1815452 Msa0142900:CDS 40.0%
TGCATCTGAACTACTAGCTA+AGG - chr1_4:1815486-1815505 None:intergenic 40.0%
AGAATGTCACTGGGAAAGAT+TGG - chr1_4:1815526-1815545 None:intergenic 40.0%
! ATGTGAGACTGAGAAGTATG+GGG - chr1_4:1815558-1815577 None:intergenic 40.0%
! TGAGCTTAACTCAGTTGGTA+TGG - chr1_4:1815692-1815711 None:intergenic 40.0%
TCTTGTGAGCTTAACTCAGT+TGG - chr1_4:1815697-1815716 None:intergenic 40.0%
CTGAGTTAAGCTCACAAGAA+CGG + chr1_4:1815698-1815717 Msa0142900:intron 40.0%
ATTTAGTCACGGTTGAACCA+TGG - chr1_4:1815769-1815788 None:intergenic 40.0%
GATAAGGGTGAAATTCGTGA+AGG + chr1_4:1815901-1815920 Msa0142900:intron 40.0%
! TCTAAAGTAATCGACCGTGA+AGG + chr1_4:1816015-1816034 Msa0142900:intron 40.0%
!! TTCAAAGTGGGTTAGCAAAG+TGG + chr1_4:1816406-1816425 Msa0142900:intron 40.0%
GGACCAACCTAAAAACATGA+AGG - chr1_4:1816620-1816639 None:intergenic 40.0%
GCTGTGTTTGTTTAGAGAGA+AGG - chr1_4:1816869-1816888 None:intergenic 40.0%
! TACGTTTGAGGTTGGATTGA+GGG - chr1_4:1816916-1816935 None:intergenic 40.0%
!! ACGGTGGTTTTTCGATCTAT+GGG + chr1_4:1817038-1817057 Msa0142900:intron 40.0%
AAGCCAAACAGTCACCAATT+CGG - chr1_4:1817175-1817194 None:intergenic 40.0%
TTCAGATCAGAGATTTCAGG+TGG + chr1_4:1817366-1817385 Msa0142900:intron 40.0%
! ATTTCAGGTGGTATTAGACG+TGG + chr1_4:1817378-1817397 Msa0142900:intron 40.0%
! TATTAGACGTGGCCTTTTTG+CGG + chr1_4:1817389-1817408 Msa0142900:intron 40.0%
TTAAAGGAACAGACCCTTTC+GGG - chr1_4:1817433-1817452 None:intergenic 40.0%
!! CTGTTCCTTTAAAACCAGTG+AGG + chr1_4:1817441-1817460 Msa0142900:intron 40.0%
!!! ACAACCCTCACTGGTTTTAA+AGG - chr1_4:1817449-1817468 None:intergenic 40.0%
! CTGCAGGTTTCAAGACTTTT+AGG + chr1_4:1817534-1817553 Msa0142900:intron 40.0%
!! ATACTTGCTGTTTGTTCAGG+GGG + chr1_4:1817637-1817656 Msa0142900:intron 40.0%
AATGAAGAGTGAAAGTCCGA+AGG - chr1_4:1817732-1817751 None:intergenic 40.0%
! TTGATTAGGGTTGATCTACC+GGG + chr1_4:1817829-1817848 Msa0142900:intron 40.0%
AAAACGAGATACAGAGACTG+GGG - chr1_4:1817912-1817931 None:intergenic 40.0%
TGTACTTCCCTTCTAATTGG+CGG + chr1_4:1818021-1818040 Msa0142900:intron 40.0%
! AGAGGTACAAAGACTTAGTG+AGG - chr1_4:1818059-1818078 None:intergenic 40.0%
! CTGTGGCTCTTTGAAAGTTT+AGG + chr1_4:1818142-1818161 Msa0142900:intron 40.0%
! GTCGGCCACAATTAGAATTT+TGG + chr1_4:1818395-1818414 Msa0142900:intron 40.0%
ATCTCTCCAAATGGAAGGAA+TGG - chr1_4:1818507-1818526 None:intergenic 40.0%
! TAGTAGTGGAATCCACTTTG+TGG + chr1_4:1818557-1818576 Msa0142900:intron 40.0%
ATCAACTGAGTTAAGCTCAC+GGG - chr1_4:1818690-1818709 None:intergenic 40.0%
AATGTACTCTCTCTCTCACA+TGG - chr1_4:1818807-1818826 None:intergenic 40.0%
GGAGAGTGAAACAATGTAAG+AGG - chr1_4:1819160-1819179 None:intergenic 40.0%
TATTGGAATGCGAGTTCTTG+CGG + chr1_4:1813660-1813679 Msa0142900:CDS 40.0%
!! TACCATGGTATTGACACCTT+TGG - chr1_4:1813729-1813748 None:intergenic 40.0%
!! GTTGATGATGAAGCATACCA+TGG - chr1_4:1813744-1813763 None:intergenic 40.0%
!!! CTAGGGTTTTGGCTAAGTTT+TGG + chr1_4:1813861-1813880 Msa0142900:intron 40.0%
!! TTTCTACAAGTATTGGCTGG+AGG - chr1_4:1819667-1819686 None:intergenic 40.0%
CAATGTTCATATGCCAGACA+TGG + chr1_4:1814360-1814379 Msa0142900:CDS 40.0%
AGCTTAAATCCATCCATGTC+TGG - chr1_4:1814376-1814395 None:intergenic 40.0%
TTTAAGCTCCTTGAGCTTGT+TGG + chr1_4:1820072-1820091 Msa0142900:CDS 40.0%
TGCGAATGATGATCCAAAGA+TGG + chr1_4:1814530-1814549 Msa0142900:CDS 40.0%
! GATCCAAAGATGGTGATGAA+AGG + chr1_4:1814540-1814559 Msa0142900:CDS 40.0%
GAAACCTGTTAGACTGAAAG+AGG + chr1_4:1820277-1820296 Msa0142900:CDS 40.0%
TGTACCTCTTTCAGTCTAAC+AGG - chr1_4:1820284-1820303 None:intergenic 40.0%
TCATTTGGCAGCATGTAATC+AGG + chr1_4:1814622-1814641 Msa0142900:CDS 40.0%
AAAGCCATCTAGAAAACGGA+AGG + chr1_4:1820427-1820446 Msa0142900:CDS 40.0%
AAACTTGCGGTGTAAATCAG+CGG - chr1_4:1820543-1820562 None:intergenic 40.0%
GTTGCTGCGGTTAATCAATT+AGG + chr1_4:1820563-1820582 Msa0142900:CDS 40.0%
TGAAAATCTGACAAGGGAGA+AGG + chr1_4:1815153-1815172 Msa0142900:intron 40.0%
CGATGCTTCGTAACTTCTAA+AGG - chr1_4:1820943-1820962 None:intergenic 40.0%
ATTAGCAGTGTCCATGTGTA+AGG - chr1_4:1820992-1821011 None:intergenic 40.0%
TTACACATGGACACTGCTAA+TGG + chr1_4:1820991-1821010 Msa0142900:intron 40.0%
ATGGTGATTCGTGTTAGTGT+CGG + chr1_4:1821048-1821067 Msa0142900:intron 40.0%
TGTATCTGAACCACTAGCTA+TGG - chr1_4:1821221-1821240 None:intergenic 40.0%
CCAGATGGAAAGGATCTAAA+AGG - chr1_4:1821322-1821341 None:intergenic 40.0%
! CCTTTTAGATCCTTTCCATC+TGG + chr1_4:1821319-1821338 Msa0142900:CDS 40.0%
TTTAGATCCTTTCCATCTGG+TGG + chr1_4:1821322-1821341 Msa0142900:CDS 40.0%
! GGAGGTTATTGGTCATGTTT+TGG - chr1_4:1821534-1821553 None:intergenic 40.0%
CAAGACAAACAAGTAGGTGA+AGG + chr1_4:1821601-1821620 Msa0142900:CDS 40.0%
! CTTGAAAACAGAAGGTGCAA+TGG + chr1_4:1821667-1821686 Msa0142900:CDS 40.0%
! ACAGAAGGTGCAATGGTATT+TGG + chr1_4:1821674-1821693 Msa0142900:CDS 40.0%
! GGAAGATAAGAGTTTGTTCC+AGG - chr1_4:1821721-1821740 None:intergenic 40.0%
!! ATGCCTCATGTGTCATTTCA+AGG + chr1_4:1821766-1821785 Msa0142900:CDS 40.0%
CAACCTTGAAATGACACATG+AGG - chr1_4:1821772-1821791 None:intergenic 40.0%
!! CTCATGTGTCATTTCAAGGT+TGG + chr1_4:1821770-1821789 Msa0142900:CDS 40.0%
TGCCGATCACATTAGAAGAA+TGG - chr1_4:1821825-1821844 None:intergenic 40.0%
AATGTGATCGGCAGTTCAAT+AGG + chr1_4:1821832-1821851 Msa0142900:CDS 40.0%
ATAGGCTCTTCTATGATTCC+TGG + chr1_4:1821850-1821869 Msa0142900:CDS 40.0%
ATGAATGTTGTCGAGCAAGA+AGG + chr1_4:1821874-1821893 Msa0142900:CDS 40.0%
GCAAGAACTCGCATTCCAAT+AGG - chr1_4:1813661-1813680 None:intergenic 45.0%
!! CTCCAAAGGTGTCAATACCA+TGG + chr1_4:1813724-1813743 Msa0142900:CDS 45.0%
CACTGCTCAAAACGCGATAA+CGG + chr1_4:1814288-1814307 Msa0142900:CDS 45.0%
GTTCATATGCCAGACATGGA+TGG + chr1_4:1814364-1814383 Msa0142900:CDS 45.0%
!! TGAGCTTGTTGGACTTGAGA+TGG + chr1_4:1814399-1814418 Msa0142900:CDS 45.0%
ACATGGTGCGTGTGATTATC+TGG + chr1_4:1814569-1814588 Msa0142900:CDS 45.0%
GAAATGGGAAAGATTCGGCT+GGG + chr1_4:1814697-1814716 Msa0142900:CDS 45.0%
AGAAGAAGCCTCGAACTGTT+TGG + chr1_4:1814832-1814851 Msa0142900:CDS 45.0%
AAATCTGACAAGGGAGAAGG+TGG + chr1_4:1815156-1815175 Msa0142900:intron 45.0%
CCTTGTGTCAGGCTCATTAT+AGG - chr1_4:1815245-1815264 None:intergenic 45.0%
CCTATAATGAGCCTGACACA+AGG + chr1_4:1815242-1815261 Msa0142900:intron 45.0%
GGAAGACAGACAAGACCATA+TGG + chr1_4:1815454-1815473 Msa0142900:CDS 45.0%
TAGCTAAGGCTGCTTCCATA+TGG - chr1_4:1815472-1815491 None:intergenic 45.0%
!! AGATTGGCTGCTGAGTTGAT+AGG - chr1_4:1815510-1815529 None:intergenic 45.0%
GGTGGGAAAAGAATGTCACT+GGG - chr1_4:1815535-1815554 None:intergenic 45.0%
! TGTGAGACTGAGAAGTATGG+GGG - chr1_4:1815557-1815576 None:intergenic 45.0%
TTGTGGTCGGGTTTAAACAC+TGG + chr1_4:1815642-1815661 Msa0142900:intron 45.0%
GTGTGTATTTCCTTGTGCAG+AGG + chr1_4:1816131-1816150 Msa0142900:intron 45.0%
TGTATTTCCTTGTGCAGAGG+AGG + chr1_4:1816134-1816153 Msa0142900:intron 45.0%
ATTAGAACCTCCTCTGCACA+AGG - chr1_4:1816144-1816163 None:intergenic 45.0%
TTGAGGTTGGATTGAGGGAA+GGG - chr1_4:1816911-1816930 None:intergenic 45.0%
! TTTGAGGTTGGATTGAGGGA+AGG - chr1_4:1816912-1816931 None:intergenic 45.0%
! GTACGTTTGAGGTTGGATTG+AGG - chr1_4:1816917-1816936 None:intergenic 45.0%
! ACATCGTGTACGTTTGAGGT+TGG - chr1_4:1816924-1816943 None:intergenic 45.0%
AGCTACATCGTGTACGTTTG+AGG - chr1_4:1816928-1816947 None:intergenic 45.0%
ACGATGTAGCTTCAACAGTG+AGG + chr1_4:1816937-1816956 Msa0142900:intron 45.0%
!! GACGGTGGTTTTTCGATCTA+TGG + chr1_4:1817037-1817056 Msa0142900:intron 45.0%
! GTTCTCTCGTTTTCTCCTTC+CGG + chr1_4:1817060-1817079 Msa0142900:intron 45.0%
GGATTAAACAACGGAGTCGA+CGG - chr1_4:1817089-1817108 None:intergenic 45.0%
GACGGAGGAGGATTAAACAA+CGG - chr1_4:1817098-1817117 None:intergenic 45.0%
! GATCCGAATTGGTGACTGTT+TGG + chr1_4:1817169-1817188 Msa0142900:intron 45.0%
! GACTGTTTGGCTTCACGAAT+CGG + chr1_4:1817182-1817201 Msa0142900:intron 45.0%
GTTCTGTTCAGATTTGCCGT+GGG + chr1_4:1817218-1817237 Msa0142900:intron 45.0%
! TTCAGATTTGCCGTGGGTTT+TGG + chr1_4:1817224-1817243 Msa0142900:intron 45.0%
AGATCTCACACCAAAACCCA+CGG - chr1_4:1817237-1817256 None:intergenic 45.0%
!! TGGGTTTTGGTGTGAGATCT+CGG + chr1_4:1817237-1817256 Msa0142900:intron 45.0%
!! TTTTGGTGTGAGATCTCGGT+GGG + chr1_4:1817241-1817260 Msa0142900:intron 45.0%
! TTCGGCTTTGTAAACCCGAA+AGG + chr1_4:1817416-1817435 Msa0142900:intron 45.0%
! TCGGCTTTGTAAACCCGAAA+GGG + chr1_4:1817417-1817436 Msa0142900:intron 45.0%
GTTTCAAAGACAACCCTCAC+TGG - chr1_4:1817458-1817477 None:intergenic 45.0%
!! GTGAGGGTTGTCTTTGAAAC+CGG + chr1_4:1817458-1817477 Msa0142900:intron 45.0%
!! GTCTTTGAAACCGGTTGAGT+TGG + chr1_4:1817467-1817486 Msa0142900:intron 45.0%
!! TTTGAAACCGGTTGAGTTGG+TGG + chr1_4:1817470-1817489 Msa0142900:intron 45.0%
! TTTAGGACCACCAACTCAAC+CGG - chr1_4:1817480-1817499 None:intergenic 45.0%
GGATCGTAATACCGTGTTGA+CGG + chr1_4:1817672-1817691 Msa0142900:intron 45.0%
! GTTACGCCTTTGAGAAGTGT+TGG + chr1_4:1817794-1817813 Msa0142900:intron 45.0%
!! ATTCCCATTTGGGTTGTACC+TGG + chr1_4:1817870-1817889 Msa0142900:intron 45.0%
!! TTCCCATTTGGGTTGTACCT+GGG + chr1_4:1817871-1817890 Msa0142900:intron 45.0%
AAACGAGATACAGAGACTGG+GGG - chr1_4:1817911-1817930 None:intergenic 45.0%
ACAACCACCGCCAATTAGAA+GGG - chr1_4:1818031-1818050 None:intergenic 45.0%
AACAACCACCGCCAATTAGA+AGG - chr1_4:1818032-1818051 None:intergenic 45.0%
! CAGATGAGTAGTAACTTGCC+AGG + chr1_4:1818114-1818133 Msa0142900:intron 45.0%
! TAACTTGCCAGGTGTATCTG+TGG + chr1_4:1818125-1818144 Msa0142900:intron 45.0%
GTCTCTCCATTCCTTCCATT+TGG + chr1_4:1818498-1818517 Msa0142900:intron 45.0%
AGTGGAATCCACTTTGTGGT+AGG + chr1_4:1818561-1818580 Msa0142900:intron 45.0%
TAGTGAGTCCTACCACAAAG+TGG - chr1_4:1818572-1818591 None:intergenic 45.0%
TGTAAGAGGATTCTGGTGTG+AGG - chr1_4:1819146-1819165 None:intergenic 45.0%
GCAAGAACTCGCATTCCAAT+AGG - chr1_4:1813661-1813680 None:intergenic 45.0%
!! CTCCAAAGGTGTCAATACCA+TGG + chr1_4:1813724-1813743 Msa0142900:CDS 45.0%
CACTGCTCAAAACGCGATAA+CGG + chr1_4:1814288-1814307 Msa0142900:CDS 45.0%
GTTCATATGCCAGACATGGA+TGG + chr1_4:1814364-1814383 Msa0142900:CDS 45.0%
TCTCAAGTCCAACAAGCTCA+AGG - chr1_4:1814399-1814418 None:intergenic 45.0%
!! TGAGCTTGTTGGACTTGAGA+TGG + chr1_4:1814399-1814418 Msa0142900:CDS 45.0%
ACATGGTGCGTGTGATTATC+TGG + chr1_4:1814569-1814588 Msa0142900:CDS 45.0%
GAAATGGGAAACATTCGGCT+GGG + chr1_4:1820381-1820400 Msa0142900:CDS 45.0%
! TGATGGTGAGGAAGAAAGTG+AGG + chr1_4:1820463-1820482 Msa0142900:CDS 45.0%
AGAAGAAGCCTCGAACTGTT+TGG + chr1_4:1814832-1814851 Msa0142900:CDS 45.0%
TAACCGCAGCAACAAACTTG+CGG - chr1_4:1820556-1820575 None:intergenic 45.0%
AAATCTGACAAGGGAGAAGG+TGG + chr1_4:1815156-1815175 Msa0142900:intron 45.0%
!! AAAAAGTACCTGGAGATGGC+TGG - chr1_4:1820902-1820921 None:intergenic 45.0%
CATAACACCACCAGATGGAA+AGG - chr1_4:1821332-1821351 None:intergenic 45.0%
CTACTCATAACACCACCAGA+TGG - chr1_4:1821337-1821356 None:intergenic 45.0%
!! ATGAATGGATTGCATCCTGC+CGG + chr1_4:1821385-1821404 Msa0142900:CDS 45.0%
ATTTGGATTGCCGCGAGTTA+GGG - chr1_4:1821479-1821498 None:intergenic 45.0%
AGCACAATGCAACAACTACC+TGG + chr1_4:1821700-1821719 Msa0142900:CDS 45.0%
TGCTCGACAACATTCATACC+AGG - chr1_4:1821871-1821890 None:intergenic 45.0%
TGTCGAGCAAGAAGGAAACT+TGG + chr1_4:1821882-1821901 Msa0142900:CDS 45.0%
!! TTATTTATTTATTTATTGTT+TGG + chr1_4:1818334-1818353 Msa0142900:intron 5.0%
!! CGTTATCGCGTTTTGAGCAG+TGG - chr1_4:1814290-1814309 None:intergenic 50.0%
GACGCGCCTAATTCTGATAG+TGG + chr1_4:1814675-1814694 Msa0142900:CDS 50.0%
GGAAATGGGAAAGATTCGGC+TGG + chr1_4:1814696-1814715 Msa0142900:CDS 50.0%
TCAGTGGACCAAACAGTTCG+AGG - chr1_4:1814843-1814862 None:intergenic 50.0%
GGGTGGGAAAAGAATGTCAC+TGG - chr1_4:1815536-1815555 None:intergenic 50.0%
! GTGAGACTGAGAAGTATGGG+GGG - chr1_4:1815556-1815575 None:intergenic 50.0%
GAAGGGAAAGGATGAGTGAG+AGG - chr1_4:1816894-1816913 None:intergenic 50.0%
GTTGGATTGAGGGAAGGGAA+AGG - chr1_4:1816906-1816925 None:intergenic 50.0%
TGTTTAATCCTCCTCCGTCG+TGG + chr1_4:1817099-1817118 Msa0142900:intron 50.0%
ATGGATCGTCGATGTCTGCA+CGG + chr1_4:1817125-1817144 Msa0142900:intron 50.0%
ACGAATCGGTTGCTGTGTCT+GGG + chr1_4:1817196-1817215 Msa0142900:intron 50.0%
GGTTCTGTTCAGATTTGCCG+TGG + chr1_4:1817217-1817236 Msa0142900:intron 50.0%
!! GTTTTGGTGTGAGATCTCGG+TGG + chr1_4:1817240-1817259 Msa0142900:intron 50.0%
!! TGGCCTTTTTGCGGTGGATT+CGG + chr1_4:1817398-1817417 Msa0142900:intron 50.0%
AAGCCGAATCCACCGCAAAA+AGG - chr1_4:1817404-1817423 None:intergenic 50.0%
CTAGGTCTGTTGAGATCTGC+AGG + chr1_4:1817518-1817537 Msa0142900:intron 50.0%
!! CTTTTAGGTAGCCTGCTCTC+CGG + chr1_4:1817549-1817568 Msa0142900:intron 50.0%
ATTGGACAATACCGGAGAGC+AGG - chr1_4:1817563-1817582 None:intergenic 50.0%
CGGTATTACGATCCACGTAC+CGG - chr1_4:1817666-1817685 None:intergenic 50.0%
GAATGGATCGACCGTCAACA+CGG - chr1_4:1817686-1817705 None:intergenic 50.0%
TGTCTATACGCAGATGCGCT+GGG + chr1_4:1817772-1817791 Msa0142900:intron 50.0%
GACCCAGGTACAACCCAAAT+GGG - chr1_4:1817876-1817895 None:intergenic 50.0%
TGACCCAGGTACAACCCAAA+TGG - chr1_4:1817877-1817896 None:intergenic 50.0%
!! ATTTGGGTTGTACCTGGGTC+AGG + chr1_4:1817876-1817895 Msa0142900:intron 50.0%
AACGAGATACAGAGACTGGG+GGG - chr1_4:1817910-1817929 None:intergenic 50.0%
ACTTCCCTTCTAATTGGCGG+TGG + chr1_4:1818024-1818043 Msa0142900:intron 50.0%
CAAAGAGCCACAGATACACC+TGG - chr1_4:1818135-1818154 None:intergenic 50.0%
!!! CGAGCTTTTAGTTCGTGCGT+CGG + chr1_4:1818377-1818396 Msa0142900:intron 50.0%
!! CGTTATCGCGTTTTGAGCAG+TGG - chr1_4:1814290-1814309 None:intergenic 50.0%
GACGCGCCTAATTCTGATAG+TGG + chr1_4:1814675-1814694 Msa0142900:CDS 50.0%
GGAAATGGGAAACATTCGGC+TGG + chr1_4:1820380-1820399 Msa0142900:CDS 50.0%
!! ACACCGCAAGTTTGTTGCTG+CGG + chr1_4:1820550-1820569 Msa0142900:CDS 50.0%
CCATGTGTAAGGCTCGTTAC+AGG - chr1_4:1820981-1821000 None:intergenic 50.0%
CCTGTAACGAGCCTTACACA+TGG + chr1_4:1820978-1820997 Msa0142900:intron 50.0%
GGATGCAGAATGCTCAGTGT+CGG + chr1_4:1821069-1821088 Msa0142900:intron 50.0%
CATTTGGATTGCCGCGAGTT+AGG - chr1_4:1821480-1821499 None:intergenic 50.0%
ACACATGAGGCATAGCAGCA+TGG - chr1_4:1821759-1821778 None:intergenic 50.0%
! GGTCTTGTCTGTCTTCCGCA+CGG - chr1_4:1815451-1815470 None:intergenic 55.0%
! GACTGAGAAGTATGGGGGGT+GGG - chr1_4:1815552-1815571 None:intergenic 55.0%
! AGACTGAGAAGTATGGGGGG+TGG - chr1_4:1815553-1815572 None:intergenic 55.0%
GGGAAAGGATGAGTGAGAGG+CGG - chr1_4:1816891-1816910 None:intergenic 55.0%
TGAGGTGATGCGTCGTTCGA+CGG + chr1_4:1816955-1816974 Msa0142900:intron 55.0%
GCAACGAAGGCGAGATGATG+CGG - chr1_4:1816988-1817007 None:intergenic 55.0%
GTGCAGACATCGACGATCCA+TGG - chr1_4:1817126-1817145 None:intergenic 55.0%
GTCGATGTCTGCACGGAACA+AGG + chr1_4:1817132-1817151 Msa0142900:intron 55.0%
GATGTCTGCACGGAACAAGG+TGG + chr1_4:1817135-1817154 Msa0142900:intron 55.0%
CACGAATCGGTTGCTGTGTC+TGG + chr1_4:1817195-1817214 Msa0142900:intron 55.0%
CAACACAGCTGAGCAGACAG+CGG - chr1_4:1817277-1817296 None:intergenic 55.0%
! TAGACGTGGCCTTTTTGCGG+TGG + chr1_4:1817392-1817411 Msa0142900:intron 55.0%
CTGTTTGTTCAGGGGGTTGC+CGG + chr1_4:1817644-1817663 Msa0142900:intron 55.0%
GTGTCTATACGCAGATGCGC+TGG + chr1_4:1817771-1817790 Msa0142900:intron 55.0%
TACAGAGACTGGGGGGACAT+TGG - chr1_4:1817903-1817922 None:intergenic 55.0%
TCAGCGGACCAAACAGTTCG+AGG - chr1_4:1820527-1820546 None:intergenic 55.0%
ATGGCAGCAGCCATAGCTAG+TGG + chr1_4:1821208-1821227 Msa0142900:CDS 55.0%
!! CTGACTCGGCTGAAGAGTTC+CGG - chr1_4:1821407-1821426 None:intergenic 55.0%
TTCCAATCGGCCCTAACTCG+CGG + chr1_4:1821466-1821485 Msa0142900:CDS 55.0%
GGGAAAGATTCGGCTGGGAC+AGG + chr1_4:1814702-1814721 Msa0142900:CDS 60.0%
GAAGGTGGCCAGCCATCTTC+AGG + chr1_4:1815171-1815190 Msa0142900:intron 60.0%
GGACGCAGAATGCACAGCGT+CGG + chr1_4:1815334-1815353 Msa0142900:intron 60.0%
CGAAGGCGAGATGATGCGGA+TGG - chr1_4:1816984-1817003 None:intergenic 60.0%
CATCTCGCCTTCGTTGCTCC+CGG + chr1_4:1816991-1817010 Msa0142900:intron 60.0%
! ACCGCGTCGGTGGTTTCTGA+CGG + chr1_4:1817019-1817038 Msa0142900:intron 60.0%
ACCGTCAGAAACCACCGACG+CGG - chr1_4:1817023-1817042 None:intergenic 60.0%
ACAACGGAGTCGACGGTCAC+CGG - chr1_4:1817082-1817101 None:intergenic 60.0%
CGACGATCCATGGACCACGA+CGG - chr1_4:1817116-1817135 None:intergenic 60.0%
GGGAAACATTCGGCTGGGAC+AGG + chr1_4:1820386-1820405 Msa0142900:CDS 60.0%
GGTGATGCGTCGTTCGACGG+TGG + chr1_4:1816958-1816977 Msa0142900:intron 65.0%
GTCAGAAACCACCGACGCGG+TGG - chr1_4:1817020-1817039 None:intergenic 65.0%
! GCGTCGGTGGTTTCTGACGG+TGG + chr1_4:1817022-1817041 Msa0142900:intron 65.0%
TCCTCCTCCGTCGTGGTCCA+TGG + chr1_4:1817106-1817125 Msa0142900:intron 65.0%
TCCATGGACCACGACGGAGG+AGG - chr1_4:1817110-1817129 None:intergenic 65.0%
CGATCCATGGACCACGACGG+AGG - chr1_4:1817113-1817132 None:intergenic 65.0%
GTGAGATCTCGGTGGGTCGC+TGG + chr1_4:1817248-1817267 Msa0142900:intron 65.0%
TTCAGGGGGTTGCCGGTACG+TGG + chr1_4:1817651-1817670 Msa0142900:intron 65.0%
GGGGACATTGGACCTGACCC+AGG - chr1_4:1817891-1817910 None:intergenic 65.0%
GAAGGTGGCCAGCCATCTCC+AGG + chr1_4:1820891-1820910 Msa0142900:intron 65.0%
CTCGGCTGAAGAGTTCCGGC+AGG - chr1_4:1821403-1821422 None:intergenic 65.0%
TGCCGCGAGTTAGGGCCGAT+TGG - chr1_4:1821471-1821490 None:intergenic 65.0%
CTCGCCTTCGTTGCTCCCGG+AGG + chr1_4:1816994-1817013 Msa0142900:intron 70.0%
GTGGCCTCCGGGAGCAACGA+AGG - chr1_4:1817001-1817020 None:intergenic 70.0%
CGGAGTCGACGGTCACCGGA+AGG - chr1_4:1817078-1817097 None:intergenic 70.0%
ACCACCGACGCGGTGGCCTC+CGG - chr1_4:1817013-1817032 None:intergenic 75.0%
! GCTCCCGGAGGCCACCGCGT+CGG + chr1_4:1817006-1817025 Msa0142900:intron 80.0%
! CCACCGACGCGGTGGCCTCC+GGG - chr1_4:1817012-1817031 None:intergenic 80.0%
! CCCGGAGGCCACCGCGTCGG+TGG + chr1_4:1817009-1817028 Msa0142900:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 1813643 1821933 1813643 ID=Msa0142900;Name=Msa0142900
chr1_4 mRNA 1813643 1821933 1813643 ID=Msa0142900-mRNA-1;Parent=Msa0142900;Name=Msa0142900-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|0.77|0.9|10|0|758
chr1_4 exon 1813643 1813745 1813643 ID=Msa0142900-mRNA-1:exon:663;Parent=Msa0142900-mRNA-1
chr1_4 exon 1814284 1814436 1814284 ID=Msa0142900-mRNA-1:exon:664;Parent=Msa0142900-mRNA-1
chr1_4 exon 1814523 1814909 1814523 ID=Msa0142900-mRNA-1:exon:665;Parent=Msa0142900-mRNA-1
chr1_4 exon 1815116 1815150 1815116 ID=Msa0142900-mRNA-1:exon:666;Parent=Msa0142900-mRNA-1
chr1_4 exon 1815419 1815535 1815419 ID=Msa0142900-mRNA-1:exon:667;Parent=Msa0142900-mRNA-1
chr1_4 exon 1819335 1819437 1819335 ID=Msa0142900-mRNA-1:exon:668;Parent=Msa0142900-mRNA-1
chr1_4 exon 1819968 1820120 1819968 ID=Msa0142900-mRNA-1:exon:669;Parent=Msa0142900-mRNA-1
chr1_4 exon 1820207 1820593 1820207 ID=Msa0142900-mRNA-1:exon:670;Parent=Msa0142900-mRNA-1
chr1_4 exon 1820836 1820894 1820836 ID=Msa0142900-mRNA-1:exon:671;Parent=Msa0142900-mRNA-1
chr1_4 exon 1821154 1821933 1821154 ID=Msa0142900-mRNA-1:exon:672;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1813643 1813745 1813643 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1814284 1814436 1814284 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1814523 1814909 1814523 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1815116 1815150 1815116 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1815419 1815535 1815419 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1819335 1819437 1819335 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1819968 1820120 1819968 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1820207 1820593 1820207 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1820836 1820894 1820836 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
chr1_4 CDS 1821154 1821933 1821154 ID=Msa0142900-mRNA-1:cds;Parent=Msa0142900-mRNA-1
Gene Sequence

>Msa0142900

ATGAATGATCAGTTTCCTATTGGAATGCGAGTTCTTGCGGTTGATGATGATAGAACATGTCTCAAGATTTTGGAGAAACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAACGCGATAACGGCGTTGAACTTGTTGAGAGAAAACAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAATGTTTTCTGCGAATGATGATCCAAAGATGGTGATGAAAGGAATTGAACATGGTGCGTGTGATTATCTGGTGAAACCTGTTAGACTAAAAGAGGTACAGATCATTTGGCAGCATGTAATCAGGAAGAAGAAAACTAGCAAACGAAGCAATCATGACGCGCCTAATTCTGATAGTGGAAATGGGAAAGATTCGGCTGGGACAGGAAATTCTGATAAGAATGAAAAACCATCTAGAAAAAGGAAGGATAAGAATGAAGATGACAGTGAGGAAGAAAATGAGGATGATTATGACAATGATGATCAAACTGCGCAGAAGAAGCCTCGAACTGTTTGGTCCACTGATTTACATCGCAAGTTTGTTGTTGCGGTCAATCAATTAGGCATTGACGAGGCTGTACCAAAAAAGATTCTTGAACTGATGAATAAGTATAGACTCTATCTACAAAGAATTAGCCGTGCGGAAGACAGACAAGACCATATGGAAGCAGCCTTAGCTAGTAGTTCAGATGCATCCTATCAACTCAGCAGCCAATCTTTCCCAATGAATGATCAGTTTCCTATTGGAATGCGAGTTCTTGCGGTTGATGATGATAGAACATGTCTCAAGATTTTGGAGAAACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAACGCGATAACGGCGTTGAACTTGTTGAGAGAAAACAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGATTTAAGCTCCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAATGTTTTCTGCGAATGATGATCCAAAGATGGTGATGAAAGGAATTGAACATGGTGCGTGTGATTATCTGGTGAAACCTGTTAGACTGAAAGAGGTACAGATCATTTGGCAGCATGTAATCAGGAAGAAGAAAACTAGCAAAAGAAGCAATCATGACGCGCCTAATTCTGATAGTGGAAATGGGAAACATTCGGCTGGGACAGGAAATTCTGATAAAAATGAAAAGCCATCTAGAAAACGGAAGGATAAGAATGAAGATGATGGTGAGGAAGAAAGTGAGGATGATTATGACAATGATGATCAAACTGCGCAGAAGAAGCCTCGAACTGTTTGGTCCGCTGATTTACACCGCAAGTTTGTTGCTGCGGTTAATCAATTAGGCGTTGACAAGGCTGTACCGAAGAAGATTCTTGAACTGATGAATGTTGAAAATCTGACAAGGGAGAAGAAGTATAGACTCTATCTAAAAAGAATTAGTTGTGCGGAAGACAAACAAGATCATATGGCAGCAGCCATAGCTAGTGGTTCAGATACATCCTATTTAAGAAGTGGAGTTGGAGGACATTTGCATACATTGAATGGCTCTACACAGTTTCATAACCATTATAACAATCCTTTTAGATCCTTTCCATCTGGTGGTGTTATGAGTAGTAGATTCAACACACCTACTAATGTGAATATGAATGGATTGCATCCTGCCGGAACTCTTCAGCCGAGTCAGACACATAATTTAAACAACTTGACAGATGATCAGCTAAAGTTCCAATCGGCCCTAACTCGCGGCAATCCAAATGATGTTCAAAGAGGTATCTCTATTAGTCCTATCCAAAACATGACCAATAACCTCCCAAATTTCAGTTTCACAAACAATCCCTTGATGTTAGAAGGAAATTCTCAAGACAAACAAGTAGGTGAAGGATACAAAAATTTAGCATTGCAGAATTCACAGTTTCTCCCTTTACTTGAAAACAGAAGGTGCAATGGTATTTGGTCAAGCACAATGCAACAACTACCTGGAACAAACTCTTATCTTCCAAGAGAATCTTTTAACCATGCTGCTATGCCTCATGTGTCATTTCAAGGTTGGGATAATAACAATAATCATGATGGAAGTTACCATTCTTCTAATGTGATCGGCAGTTCAATAGGCTCTTCTATGATTCCTGGTATGAATGTTGTCGAGCAAGAAGGAAACTTGGACTACAATTATGGTGATTCGGTACAATGA
Protein sequence

>Msa0142900

MNDQFPIGMRVLAVDDDRTCLKILEKLLQRCQYHVTTAQNAITALNLLRENKSNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPKMVMKGIEHGACDYLVKPVRLKEVQIIWQHVIRKKKTSKRSNHDAPNSDSGNGKDSAGTGNSDKNEKPSRKRKDKNEDDSEEENEDDYDNDDQTAQKKPRTVWSTDLHRKFVVAVNQLGIDEAVPKKILELMNKYRLYLQRISRAEDRQDHMEAALASSSDASYQLSSQSFPMNDQFPIGMRVLAVDDDRTCLKILEKLLQRCQYHVTTAQNAITALNLLRENKSNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPKMVMKGIEHGACDYLVKPVRLKEVQIIWQHVIRKKKTSKRSNHDAPNSDSGNGKHSAGTGNSDKNEKPSRKRKDKNEDDGEEESEDDYDNDDQTAQKKPRTVWSADLHRKFVAAVNQLGVDKAVPKKILELMNVENLTREKKYRLYLKRISCAEDKQDHMAAAIASGSDTSYLRSGVGGHLHTLNGSTQFHNHYNNPFRSFPSGGVMSSRFNTPTNVNMNGLHPAGTLQPSQTHNLNNLTDDQLKFQSALTRGNPNDVQRGISISPIQNMTNNLPNFSFTNNPLMLEGNSQDKQVGEGYKNLALQNSQFLPLLENRRCNGIWSSTMQQLPGTNSYLPRESFNHAAMPHVSFQGWDNNNNHDGSYHSSNVIGSSIGSSMIPGMNVVEQEGNLDYNYGDSVQ*