Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0142910 | KEH39871.1 | 89.642 | 531 | 40 | 4 | 1 | 517 | 152 | 681 | 0.0 | 929 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0142910 | sp|Q6H805|ORR24_ORYSJ | 48.338 | 331 | 126 | 9 | 3 | 305 | 23 | 336 | 4.97e-88 | 286 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0142910 | A0A072VE88 | 89.642 | 531 | 40 | 4 | 1 | 517 | 152 | 681 | 0.0 | 929 |
Gene ID | Type | Classification |
---|---|---|
Msa0142910 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0142910 | MtrunA17_Chr1g0149851 | 86.654 | 532 | 35 | 4 | 1 | 500 | 1 | 528 | 0.0 | 890 |
Msa0142910 | MtrunA17_Chr1g0149841 | 60.728 | 522 | 112 | 15 | 1 | 455 | 1 | 496 | 1.29e-179 | 514 |
Msa0142910 | MtrunA17_Chr7g0275891 | 64.162 | 346 | 82 | 5 | 1 | 320 | 1 | 330 | 1.33e-137 | 401 |
Msa0142910 | MtrunA17_Chr3g0137101 | 48.618 | 434 | 165 | 14 | 3 | 401 | 6 | 416 | 1.65e-110 | 342 |
Msa0142910 | MtrunA17_Chr7g0275401 | 59.236 | 314 | 104 | 4 | 1 | 313 | 1 | 291 | 9.97e-105 | 315 |
Msa0142910 | MtrunA17_Chr1g0149831 | 75.393 | 191 | 33 | 3 | 64 | 243 | 1 | 188 | 4.45e-80 | 249 |
Msa0142910 | MtrunA17_Chr2g0304841 | 46.667 | 345 | 145 | 9 | 3 | 313 | 16 | 355 | 9.45e-77 | 254 |
Msa0142910 | MtrunA17_Chr4g0067981 | 50.198 | 253 | 112 | 5 | 2 | 242 | 28 | 278 | 3.56e-68 | 231 |
Msa0142910 | MtrunA17_Chr2g0294911 | 48.450 | 258 | 117 | 4 | 1 | 246 | 25 | 278 | 1.27e-65 | 223 |
Msa0142910 | MtrunA17_Chr3g0123131 | 47.984 | 248 | 109 | 4 | 5 | 236 | 13 | 256 | 4.41e-64 | 218 |
Msa0142910 | MtrunA17_Chr8g0376881 | 48.387 | 248 | 110 | 5 | 3 | 236 | 23 | 266 | 7.62e-64 | 217 |
Msa0142910 | MtrunA17_Chr1g0161431 | 45.769 | 260 | 112 | 6 | 4 | 241 | 10 | 262 | 2.18e-63 | 218 |
Msa0142910 | MtrunA17_Chr4g0074411 | 43.974 | 307 | 150 | 8 | 5 | 298 | 18 | 315 | 1.66e-62 | 215 |
Msa0142910 | MtrunA17_Chr4g0074401 | 41.718 | 326 | 160 | 8 | 3 | 310 | 15 | 328 | 1.63e-60 | 209 |
Msa0142910 | MtrunA17_Chr3g0134481 | 66.667 | 129 | 43 | 0 | 2 | 130 | 5 | 133 | 1.00e-50 | 171 |
Msa0142910 | MtrunA17_Chr3g0134461 | 46.977 | 215 | 61 | 2 | 2 | 215 | 5 | 167 | 7.19e-48 | 164 |
Msa0142910 | MtrunA17_Chr4g0074421 | 49.375 | 160 | 76 | 2 | 55 | 214 | 2 | 156 | 2.20e-42 | 150 |
Msa0142910 | MtrunA17_Chr4g0009901 | 32.800 | 250 | 128 | 5 | 2 | 239 | 7 | 228 | 3.29e-35 | 132 |
Msa0142910 | MtrunA17_Chr4g0009851 | 32.099 | 243 | 125 | 6 | 5 | 235 | 11 | 225 | 3.60e-33 | 128 |
Msa0142910 | MtrunA17_Chr7g0275881 | 42.754 | 138 | 39 | 4 | 366 | 503 | 1 | 98 | 4.26e-23 | 94.7 |
Msa0142910 | MtrunA17_Chr8g0391911 | 32.558 | 215 | 121 | 7 | 5 | 211 | 9 | 207 | 1.17e-22 | 97.4 |
Msa0142910 | MtrunA17_Chr3g0127941 | 34.532 | 139 | 86 | 2 | 9 | 143 | 56 | 193 | 3.84e-22 | 100 |
Msa0142910 | MtrunA17_Chr4g0009981 | 32.121 | 165 | 85 | 3 | 50 | 214 | 2 | 139 | 7.66e-22 | 95.1 |
Msa0142910 | MtrunA17_Chr7g0276361 | 29.515 | 227 | 134 | 5 | 2 | 220 | 5 | 213 | 4.07e-21 | 97.1 |
Msa0142910 | MtrunA17_Chr6g0456631 | 34.646 | 127 | 80 | 2 | 3 | 127 | 7 | 132 | 5.39e-21 | 90.1 |
Msa0142910 | MtrunA17_Chr6g0471041 | 27.907 | 215 | 125 | 3 | 4 | 217 | 13 | 198 | 1.60e-20 | 94.0 |
Msa0142910 | MtrunA17_Chr8g0350761 | 28.634 | 227 | 139 | 4 | 8 | 214 | 20 | 243 | 1.19e-19 | 91.7 |
Msa0142910 | MtrunA17_Chr4g0011071 | 28.824 | 170 | 94 | 3 | 47 | 216 | 31 | 173 | 1.34e-19 | 86.7 |
Msa0142910 | MtrunA17_Chr8g0345901 | 34.965 | 143 | 82 | 2 | 11 | 142 | 38 | 180 | 4.83e-19 | 90.5 |
Msa0142910 | MtrunA17_Chr8g0383961 | 33.871 | 124 | 82 | 0 | 4 | 127 | 13 | 136 | 1.67e-18 | 85.5 |
Msa0142910 | MtrunA17_Chr1g0181811 | 35.246 | 122 | 76 | 2 | 9 | 127 | 85 | 206 | 6.50e-18 | 87.4 |
Msa0142910 | MtrunA17_Chr3g0091641 | 33.065 | 124 | 80 | 1 | 9 | 129 | 24 | 147 | 1.89e-17 | 85.5 |
Msa0142910 | MtrunA17_Chr4g0030271 | 35.246 | 122 | 76 | 1 | 9 | 127 | 89 | 210 | 2.52e-17 | 85.5 |
Msa0142910 | MtrunA17_Chr4g0061021 | 32.258 | 124 | 81 | 1 | 9 | 129 | 33 | 156 | 1.98e-16 | 82.4 |
Msa0142910 | MtrunA17_Chr5g0423031 | 38.835 | 103 | 57 | 3 | 2 | 103 | 7 | 104 | 1.08e-15 | 75.5 |
Msa0142910 | MtrunA17_Chr7g0256551 | 33.094 | 139 | 72 | 3 | 11 | 128 | 11 | 149 | 9.45e-13 | 68.2 |
Msa0142910 | MtrunA17_Chr8g0352871 | 31.884 | 138 | 74 | 3 | 11 | 128 | 11 | 148 | 5.48e-12 | 64.7 |
Msa0142910 | MtrunA17_Chr4g0059571 | 32.308 | 130 | 76 | 2 | 9 | 126 | 26 | 155 | 6.09e-12 | 65.1 |
Msa0142910 | MtrunA17_Chr4g0010001 | 38.095 | 84 | 51 | 1 | 2 | 85 | 7 | 89 | 6.93e-12 | 61.6 |
Msa0142910 | MtrunA17_Chr4g0009991 | 32.231 | 121 | 54 | 3 | 97 | 217 | 1 | 93 | 7.80e-12 | 62.8 |
Msa0142910 | MtrunA17_Chr5g0400241 | 33.835 | 133 | 84 | 2 | 5 | 136 | 14 | 143 | 1.30e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0142910 | AT2G25180.1 | 52.258 | 310 | 127 | 6 | 3 | 297 | 11 | 314 | 5.29e-86 | 277 |
Msa0142910 | AT4G31920.1 | 46.467 | 368 | 147 | 11 | 3 | 344 | 11 | 354 | 3.77e-82 | 266 |
Msa0142910 | AT5G58080.1 | 42.998 | 407 | 154 | 16 | 3 | 375 | 12 | 374 | 1.16e-67 | 229 |
Msa0142910 | AT3G16857.1 | 44.170 | 283 | 110 | 7 | 3 | 246 | 31 | 304 | 7.68e-64 | 220 |
Msa0142910 | AT3G16857.2 | 44.170 | 283 | 110 | 7 | 3 | 246 | 31 | 304 | 1.29e-63 | 220 |
Msa0142910 | AT1G67710.1 | 45.020 | 251 | 111 | 6 | 6 | 236 | 8 | 251 | 2.07e-55 | 194 |
Msa0142910 | AT2G01760.1 | 42.164 | 268 | 135 | 6 | 1 | 249 | 3 | 269 | 9.17e-52 | 181 |
Msa0142910 | AT3G16857.3 | 42.149 | 242 | 92 | 7 | 44 | 246 | 2 | 234 | 1.06e-46 | 172 |
Msa0142910 | AT2G01760.2 | 37.919 | 298 | 137 | 7 | 1 | 251 | 3 | 299 | 7.01e-46 | 166 |
Msa0142910 | AT5G49240.1 | 37.963 | 216 | 121 | 4 | 5 | 214 | 38 | 246 | 2.93e-37 | 139 |
Msa0142910 | AT3G62670.1 | 34.975 | 203 | 120 | 3 | 10 | 212 | 42 | 232 | 1.85e-31 | 126 |
Msa0142910 | AT1G67710.2 | 40.933 | 193 | 87 | 6 | 64 | 236 | 1 | 186 | 5.65e-31 | 125 |
Msa0142910 | AT2G01760.3 | 38.049 | 205 | 107 | 6 | 64 | 249 | 1 | 204 | 8.12e-26 | 108 |
Msa0142910 | AT1G49190.1 | 29.680 | 219 | 133 | 3 | 4 | 212 | 29 | 236 | 1.06e-25 | 109 |
Msa0142910 | AT2G46790.1 | 39.024 | 123 | 70 | 2 | 9 | 127 | 37 | 158 | 1.68e-22 | 100 |
Msa0142910 | AT2G46790.3 | 39.024 | 123 | 70 | 2 | 9 | 127 | 37 | 158 | 1.78e-22 | 100 |
Msa0142910 | AT1G49190.2 | 37.600 | 125 | 78 | 0 | 4 | 128 | 29 | 153 | 1.65e-21 | 98.6 |
Msa0142910 | AT5G24470.1 | 36.719 | 128 | 76 | 2 | 7 | 130 | 48 | 174 | 2.13e-20 | 95.1 |
Msa0142910 | AT5G60100.7 | 36.220 | 127 | 77 | 2 | 5 | 127 | 59 | 185 | 2.43e-18 | 87.8 |
Msa0142910 | AT5G60100.6 | 36.220 | 127 | 77 | 2 | 5 | 127 | 59 | 185 | 2.43e-18 | 87.8 |
Msa0142910 | AT5G60100.4 | 36.220 | 127 | 77 | 2 | 5 | 127 | 59 | 185 | 2.43e-18 | 87.8 |
Msa0142910 | AT5G60100.5 | 36.220 | 127 | 77 | 2 | 5 | 127 | 59 | 185 | 2.79e-18 | 88.2 |
Msa0142910 | AT5G60100.3 | 36.220 | 127 | 77 | 2 | 5 | 127 | 59 | 185 | 2.79e-18 | 88.2 |
Msa0142910 | AT5G60100.1 | 36.220 | 127 | 77 | 2 | 5 | 127 | 59 | 185 | 2.79e-18 | 88.2 |
Msa0142910 | AT5G60100.2 | 36.220 | 127 | 77 | 2 | 5 | 127 | 59 | 185 | 4.90e-18 | 87.4 |
Msa0142910 | AT1G67710.3 | 35.260 | 173 | 85 | 6 | 84 | 236 | 12 | 177 | 5.61e-18 | 87.0 |
Msa0142910 | AT5G61380.1 | 33.871 | 124 | 79 | 1 | 9 | 129 | 19 | 142 | 6.83e-18 | 87.4 |
Msa0142910 | AT5G02810.1 | 35.246 | 122 | 76 | 1 | 9 | 127 | 78 | 199 | 8.55e-18 | 87.4 |
Msa0142910 | AT5G07210.2 | 24.309 | 362 | 207 | 12 | 7 | 314 | 14 | 362 | 3.24e-17 | 85.1 |
Msa0142910 | AT2G27070.1 | 24.000 | 300 | 156 | 9 | 7 | 248 | 14 | 299 | 1.03e-15 | 80.5 |
Msa0142910 | AT3G57040.2 | 29.630 | 162 | 92 | 3 | 11 | 150 | 11 | 172 | 4.96e-12 | 66.2 |
Msa0142910 | AT3G57040.1 | 29.630 | 162 | 92 | 3 | 11 | 150 | 11 | 172 | 4.96e-12 | 66.2 |
Msa0142910 | AT3G56380.2 | 31.298 | 131 | 76 | 2 | 9 | 125 | 20 | 150 | 2.86e-11 | 62.4 |
Msa0142910 | AT3G56380.1 | 31.538 | 130 | 76 | 2 | 9 | 125 | 20 | 149 | 5.18e-11 | 61.6 |
Msa0142910 | AT2G40670.2 | 32.331 | 133 | 74 | 2 | 9 | 125 | 29 | 161 | 7.82e-11 | 61.2 |
Find 111 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCGAATATCTTGATTAAA+TGG | 0.148937 | 1_4:-1832713 | None:intergenic |
TAGAACATGTCTCAAGATTT+TGG | 0.179210 | 1_4:+1831292 | Msa0142910:CDS |
GGAAGGTAAGAGTTTGTTTC+TGG | 0.198817 | 1_4:-1833909 | None:intergenic |
AGCTAATATGGCCGAAGATT+TGG | 0.235811 | 1_4:+1833515 | Msa0142910:CDS |
TTTAAGCTTCTTGAGCTTAT+TGG | 0.242147 | 1_4:+1832067 | Msa0142910:CDS |
ATTCCTTTCATCACCATCTT+TGG | 0.253553 | 1_4:-1832229 | None:intergenic |
ACTCGACAGGTGATCATCTT+AGG | 0.278334 | 1_4:+1833739 | Msa0142910:CDS |
TGATGTCCCACCAGAGAAAT+TGG | 0.298503 | 1_4:-1834460 | None:intergenic |
AATTTCCATCATGGTTGTTA+TGG | 0.300876 | 1_4:-1834046 | None:intergenic |
TGTACCTCCTTCAATGTAAC+AGG | 0.302320 | 1_4:-1832283 | None:intergenic |
CTTGCTGCTGTTAAACAATT+AGG | 0.302670 | 1_4:+1832565 | Msa0142910:CDS |
ATGAATGATCAATTTCCTAT+TGG | 0.313965 | 1_4:+1831242 | Msa0142910:CDS |
CCATTTCCACTATCAGAATT+AGG | 0.318838 | 1_4:-1832367 | None:intergenic |
CCTAATTCTGATAGTGGAAA+TGG | 0.330629 | 1_4:+1832367 | Msa0142910:CDS |
GCTAATATGGCCGAAGATTT+GGG | 0.348373 | 1_4:+1833516 | Msa0142910:CDS |
CATGTGGTTGGTAGTTCAAT+AGG | 0.353197 | 1_4:+1834080 | Msa0142910:CDS |
GCATGGACAAAACCTTCTTT+TGG | 0.354006 | 1_4:-1833930 | None:intergenic |
TGAAGGAGGTACAAATGATT+TGG | 0.363320 | 1_4:+1832293 | Msa0142910:CDS |
TCTAATAATGTGCCATTTCA+AGG | 0.366783 | 1_4:+1834011 | Msa0142910:CDS |
TTCACAACATGAATCATAGA+AGG | 0.379234 | 1_4:-1834104 | None:intergenic |
GATATAACCCATTCTTGAAT+AGG | 0.403697 | 1_4:-1833556 | None:intergenic |
CAATTATATGCCAATTTCTC+TGG | 0.412361 | 1_4:+1834450 | Msa0142910:CDS |
CTACTACTCATACCACTAGA+TGG | 0.416526 | 1_4:-1833657 | None:intergenic |
AGAAGAAGCCTCGAGTTGTT+TGG | 0.418038 | 1_4:+1832518 | Msa0142910:CDS |
TACCATGGTATTGACACCTT+TGG | 0.419217 | 1_4:-1831325 | None:intergenic |
TTATTATTATGAAACTGTCT+AGG | 0.422621 | 1_4:-1833615 | None:intergenic |
TATGAACATTGCTGATTACT+AGG | 0.423694 | 1_4:-1832027 | None:intergenic |
TTATTATCCCATCCTTGAAA+TGG | 0.424148 | 1_4:-1834023 | None:intergenic |
AGCTTAAACCCATCCATGTC+TGG | 0.428879 | 1_4:-1832052 | None:intergenic |
AACTCTTACCTTCCAAAAGA+AGG | 0.429300 | 1_4:+1833918 | Msa0142910:CDS |
GTTTCTGGTAATTGCAGCAT+AGG | 0.430843 | 1_4:-1833894 | None:intergenic |
AAAGAAGGAGCAATGACATT+TGG | 0.435477 | 1_4:+1833865 | Msa0142910:CDS |
CTCGAATATCTTGATTAAAT+GGG | 0.439169 | 1_4:-1832712 | None:intergenic |
TGATAGATCCTATTCAAGAA+TGG | 0.441988 | 1_4:+1833548 | Msa0142910:CDS |
GATAGATCCTATTCAAGAAT+GGG | 0.444292 | 1_4:+1833549 | Msa0142910:CDS |
TTCAGATCCTTTCCATCTAG+TGG | 0.445066 | 1_4:+1833645 | Msa0142910:CDS |
GCAAGAACACGCATTCCAAT+AGG | 0.451965 | 1_4:-1831257 | None:intergenic |
TCTTTGAACATCATTCAGAT+TGG | 0.469109 | 1_4:-1833784 | None:intergenic |
ATGAATAATCAGATGAAGGC+TGG | 0.470466 | 1_4:+1834218 | Msa0142910:CDS |
ATGGGTTATATCAGTGGAGT+TGG | 0.473556 | 1_4:+1833567 | Msa0142910:CDS |
GGGAAACATTCGGCTGGGAC+AGG | 0.477461 | 1_4:+1832388 | Msa0142910:CDS |
GCTGAAACCTGTTACATTGA+AGG | 0.477526 | 1_4:+1832276 | Msa0142910:CDS |
CTAATTCTGATAGTGGAAAT+GGG | 0.482228 | 1_4:+1832368 | Msa0142910:CDS |
TGAGCTTATTGGACTTGAGA+TGG | 0.484301 | 1_4:+1832078 | Msa0142910:CDS |
TTTCTGGTAATTGCAGCATA+GGG | 0.484334 | 1_4:-1833893 | None:intergenic |
AGAATCATTACCCAAATCTT+CGG | 0.485778 | 1_4:-1833526 | None:intergenic |
TGTGAGTTCATGTTATATGT+AGG | 0.486197 | 1_4:-1833966 | None:intergenic |
GAATGCTATTGAAGGAAACT+TGG | 0.492011 | 1_4:+1834124 | Msa0142910:CDS |
TGATTTGGCAACATGTAGTC+AGG | 0.492304 | 1_4:+1832308 | Msa0142910:CDS |
TGATCATCTTAGGTTTCAAT+CGG | 0.494786 | 1_4:+1833749 | Msa0142910:CDS |
CATGTTGTGAATGCTATTGA+AGG | 0.494924 | 1_4:+1834116 | Msa0142910:CDS |
GATGCGCCTAATTCTGATAG+TGG | 0.498616 | 1_4:+1832361 | Msa0142910:CDS |
TGAGAGTCTACAGAAGGAAA+TGG | 0.499941 | 1_4:-1833810 | None:intergenic |
GCCAGTAGTGTTAATCTGCA+TGG | 0.509822 | 1_4:+1833693 | Msa0142910:CDS |
TAGTGGAAATGGGAAACATT+CGG | 0.510168 | 1_4:+1832378 | Msa0142910:CDS |
GGTTATATCAGTGGAGTTGG+TGG | 0.511432 | 1_4:+1833570 | Msa0142910:CDS |
GGAAATGGGAAACATTCGGC+TGG | 0.517134 | 1_4:+1832382 | Msa0142910:CDS |
TACCATCCTTCTCATGTGGT+TGG | 0.521062 | 1_4:+1834068 | Msa0142910:CDS |
GAAGAACGAAGATGATGATG+AGG | 0.524981 | 1_4:+1832453 | Msa0142910:CDS |
TTGCATAACTTACTTATGAC+AGG | 0.526242 | 1_4:-1832106 | None:intergenic |
TCCATGCAGATTAACACTAC+TGG | 0.528713 | 1_4:-1833694 | None:intergenic |
AAGGATGGTAATTTCCATCA+TGG | 0.529123 | 1_4:-1834055 | None:intergenic |
AATAACCATAACAACCATGA+TGG | 0.531658 | 1_4:+1834041 | Msa0142910:CDS |
ATTCAGATTGGCGCGAGCTA+TGG | 0.531857 | 1_4:-1833772 | None:intergenic |
TATTATTATGAAACTGTCTA+GGG | 0.535599 | 1_4:-1833614 | None:intergenic |
TTCATATGCCAGACATGGAT+GGG | 0.536690 | 1_4:+1832044 | Msa0142910:CDS |
TATGATGAATAATCAGATGA+AGG | 0.541034 | 1_4:+1834214 | Msa0142910:CDS |
GTTCATATGCCAGACATGGA+TGG | 0.546140 | 1_4:+1832043 | Msa0142910:CDS |
ACCTCATGTGGTTTCAATGA+CGG | 0.547065 | 1_4:-1834188 | None:intergenic |
TAATGTGCCATTTCAAGGAT+GGG | 0.550140 | 1_4:+1834016 | Msa0142910:CDS |
TTATATGCCAATTTCTCTGG+TGG | 0.550617 | 1_4:+1834453 | Msa0142910:CDS |
GAGTTGTTCAAATTATGTGC+AGG | 0.552747 | 1_4:-1833720 | None:intergenic |
CATAATTTGAACAACTCGAC+AGG | 0.552801 | 1_4:+1833726 | Msa0142910:CDS |
CAATGTTCATATGCCAGACA+TGG | 0.556391 | 1_4:+1832039 | Msa0142910:CDS |
ATAATGTGCCATTTCAAGGA+TGG | 0.556574 | 1_4:+1834015 | Msa0142910:CDS |
GGAAGAAGAAAACTAGCAAA+CGG | 0.556828 | 1_4:+1832329 | Msa0142910:CDS |
TTTAATCAAGATATTCGAGT+AGG | 0.558346 | 1_4:+1832683 | Msa0142910:intron |
TTCATCATATATACCTCATG+TGG | 0.558721 | 1_4:-1834200 | None:intergenic |
TGATGATGAGGATGAGAATG+AGG | 0.567738 | 1_4:+1832465 | Msa0142910:CDS |
CATGAGAGTCATGATCAAAC+CGG | 0.571164 | 1_4:+1834283 | Msa0142910:CDS |
TATATGCCAATTTCTCTGGT+GGG | 0.573019 | 1_4:+1834454 | Msa0142910:CDS |
GAGTTCATGTTATATGTAGG+AGG | 0.588472 | 1_4:-1833963 | None:intergenic |
ACTCATACCACTAGATGGAA+AGG | 0.588967 | 1_4:-1833652 | None:intergenic |
GAACTACCAACCACATGAGA+AGG | 0.589560 | 1_4:-1834074 | None:intergenic |
TGTTAGTGCACTTTGAGCAG+TGG | 0.591132 | 1_4:-1831966 | None:intergenic |
TCAAGAATGGGTTATATCAG+TGG | 0.601175 | 1_4:+1833561 | Msa0142910:CDS |
TGCAGATTAACACTACTGGC+AGG | 0.606997 | 1_4:-1833690 | None:intergenic |
GTGATGAAAGGAATTGATCA+TGG | 0.607173 | 1_4:+1832238 | Msa0142910:CDS |
CAATTATTGTGATCGTATCG+CGG | 0.612466 | 1_4:+1834151 | Msa0142910:CDS |
TGCGAATGATGATCCAAAGA+TGG | 0.615837 | 1_4:+1832216 | Msa0142910:CDS |
TGCATATTCTAATCTTGCCG+CGG | 0.619450 | 1_4:-1834486 | None:intergenic |
GAAATGGGAAACATTCGGCT+GGG | 0.620073 | 1_4:+1832383 | Msa0142910:CDS |
TAGGAGGCATAGCAGCAGCA+TGG | 0.623883 | 1_4:-1833947 | None:intergenic |
GAATGTTGAGAGTCTACAGA+AGG | 0.629708 | 1_4:-1833816 | None:intergenic |
AAATTACCATCCTTCTCATG+TGG | 0.631597 | 1_4:+1834064 | Msa0142910:CDS |
GAAGCCTCGAGTTGTTTGGT+CGG | 0.632069 | 1_4:+1832522 | Msa0142910:CDS |
ACATGTTCTATCATCATCGA+CGG | 0.636994 | 1_4:-1831279 | None:intergenic |
GATCCAAAGATGGTGATGAA+AGG | 0.637771 | 1_4:+1832226 | Msa0142910:CDS |
TCACAACATGAATCATAGAA+GGG | 0.643072 | 1_4:-1834103 | None:intergenic |
TACCAACCACATGAGAAGGA+TGG | 0.647791 | 1_4:-1834070 | None:intergenic |
CTCCAAAGGTGTCAATACCA+TGG | 0.650196 | 1_4:+1831323 | Msa0142910:CDS |
AATCAAGCTCATTAGACATG+TGG | 0.650925 | 1_4:-1834247 | None:intergenic |
TAACAGCAGCAAGAAACTTG+CGG | 0.653136 | 1_4:-1832555 | None:intergenic |
TAATGAGCTTGATTCGCTCG+AGG | 0.661321 | 1_4:+1834256 | Msa0142910:CDS |
TCGTGACAATGATGATTCGA+CGG | 0.663799 | 1_4:+1832492 | Msa0142910:CDS |
ACATATAACATGAACTCACA+AGG | 0.670292 | 1_4:+1833969 | Msa0142910:CDS |
CTGGTGGGACATCAATGCCG+CGG | 0.675642 | 1_4:+1834469 | Msa0142910:CDS |
GAAACCTGTTACATTGAAGG+AGG | 0.684192 | 1_4:+1832279 | Msa0142910:CDS |
TCAGCCGACCAAACAACTCG+AGG | 0.687224 | 1_4:-1832526 | None:intergenic |
AACTGTCTAGGGTCATTCAG+TGG | 0.690957 | 1_4:-1833603 | None:intergenic |
TCCGTCATTGAAACCACATG+AGG | 0.701079 | 1_4:+1834187 | Msa0142910:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGTTCTTTTGATTTTTT+TGG | + | chr1_4:1831386-1831405 | Msa0142910:intron | 15.0% |
!! | AATATAAGATCACAAAATAT+TGG | - | chr1_4:1831766-1831785 | None:intergenic | 15.0% |
!!! | TGTGATCTTATATTATTTTT+TGG | + | chr1_4:1831772-1831791 | Msa0142910:intron | 15.0% |
!! | AAAATAAGAAATCTAATCAT+TGG | - | chr1_4:1831865-1831884 | None:intergenic | 15.0% |
!!! | ATTTTTCATAATTTTTGTTG+TGG | + | chr1_4:1831927-1831946 | Msa0142910:intron | 15.0% |
!! | ATTTAAGGAAAATACTTATA+TGG | - | chr1_4:1833350-1833369 | None:intergenic | 15.0% |
!!! | ATGTGATTACATTTAATTTA+AGG | - | chr1_4:1833365-1833384 | None:intergenic | 15.0% |
!! | TAAATTAAATGTAATCACAT+CGG | + | chr1_4:1833365-1833384 | Msa0142910:intron | 15.0% |
!!! | AGTTTATAAGCATTTTATTT+AGG | + | chr1_4:1833433-1833452 | Msa0142910:intron | 15.0% |
!! | GATTCATAAAAATTCAACAT+TGG | - | chr1_4:1831600-1831619 | None:intergenic | 20.0% |
!!! | AATTTTCTTTGATACTGTTT+AGG | + | chr1_4:1831636-1831655 | Msa0142910:intron | 20.0% |
!!! | AATCTCTAAAAGAATAAGAT+CGG | - | chr1_4:1831694-1831713 | None:intergenic | 20.0% |
!!! | ATTTCATAGATTTTATGATG+TGG | + | chr1_4:1831894-1831913 | Msa0142910:intron | 20.0% |
!! | CATGCATAGAAAATTATTTA+GGG | + | chr1_4:1832159-1832178 | Msa0142910:intron | 20.0% |
!! | TATAAGATAAGAAAAATACC+TGG | - | chr1_4:1833056-1833075 | None:intergenic | 20.0% |
!! | TATTATTATGAAACTGTCTA+GGG | - | chr1_4:1833617-1833636 | None:intergenic | 20.0% |
!! | TTATTATTATGAAACTGTCT+AGG | - | chr1_4:1833618-1833637 | None:intergenic | 20.0% |
!!! | CATTGCATAAATTTTATTAC+CGG | - | chr1_4:1834305-1834324 | None:intergenic | 20.0% |
! | ATGAATGATCAATTTCCTAT+TGG | + | chr1_4:1831242-1831261 | Msa0142910:CDS | 25.0% |
! | CAAAAAAAACAAACATACCA+TGG | - | chr1_4:1831343-1831362 | None:intergenic | 25.0% |
! | AATAAGATCGGTCAAAATAT+AGG | - | chr1_4:1831682-1831701 | None:intergenic | 25.0% |
! | TTTAATTGCATCCAAATTGT+TGG | + | chr1_4:1831805-1831824 | Msa0142910:intron | 25.0% |
!! | CCTAAATAATTTTCTATGCA+TGG | - | chr1_4:1832161-1832180 | None:intergenic | 25.0% |
! | CCATGCATAGAAAATTATTT+AGG | + | chr1_4:1832158-1832177 | Msa0142910:intron | 25.0% |
! | TTAAATGGGAACAAATAAAG+AGG | - | chr1_4:1832668-1832687 | None:intergenic | 25.0% |
! | CTCGAATATCTTGATTAAAT+GGG | - | chr1_4:1832682-1832701 | None:intergenic | 25.0% |
! | ACTCGAATATCTTGATTAAA+TGG | - | chr1_4:1832683-1832702 | None:intergenic | 25.0% |
! | TTTAATCAAGATATTCGAGT+AGG | + | chr1_4:1832683-1832702 | Msa0142910:intron | 25.0% |
! | CTCGAATATCTTGATTAAAT+GGG | - | chr1_4:1832682-1832701 | None:intergenic | 25.0% |
! | ACTCGAATATCTTGATTAAA+TGG | - | chr1_4:1832683-1832702 | None:intergenic | 25.0% |
! | TTTAATCAAGATATTCGAGT+AGG | + | chr1_4:1832683-1832702 | Msa0142910:intron | 25.0% |
! | GTTTAATAATCTTCATAGCA+TGG | - | chr1_4:1832797-1832816 | None:intergenic | 25.0% |
! | TATAGAAAAACTTCATAGCA+TGG | - | chr1_4:1832919-1832938 | None:intergenic | 25.0% |
!!! | ATCAAGTCAAGAATCTTTTT+TGG | - | chr1_4:1832991-1833010 | None:intergenic | 25.0% |
!! | AAAAAAGATTCTTGACTTGA+TGG | + | chr1_4:1832990-1833009 | Msa0142910:intron | 25.0% |
! | TCTGAAAAAACAAGCTAATA+TGG | + | chr1_4:1833503-1833522 | Msa0142910:CDS | 25.0% |
! | ATCCTTTACTTGAAAAAAGA+AGG | + | chr1_4:1833850-1833869 | Msa0142910:CDS | 25.0% |
! | TATGATGAATAATCAGATGA+AGG | + | chr1_4:1834214-1834233 | Msa0142910:CDS | 25.0% |
! | CAGAAAGCAATATAGAAAAA+TGG | - | chr1_4:1834405-1834424 | None:intergenic | 25.0% |
! | TAGAACATGTCTCAAGATTT+TGG | + | chr1_4:1831292-1831311 | Msa0142910:CDS | 30.0% |
!!! | TCTTTTGATTTTTTTGGCCT+AGG | + | chr1_4:1831392-1831411 | Msa0142910:intron | 30.0% |
TCATTCAAATTACATTGCCT+AGG | - | chr1_4:1831412-1831431 | None:intergenic | 30.0% | |
TTTAGAGATTGCACATGATT+TGG | + | chr1_4:1831704-1831723 | Msa0142910:intron | 30.0% | |
ATCTAGTGAATCCAACAATT+TGG | - | chr1_4:1831819-1831838 | None:intergenic | 30.0% | |
! | TATGAACATTGCTGATTACT+AGG | - | chr1_4:1832030-1832049 | None:intergenic | 30.0% |
TTTAAGCTTCTTGAGCTTAT+TGG | + | chr1_4:1832067-1832086 | Msa0142910:CDS | 30.0% | |
TTGCATAACTTACTTATGAC+AGG | - | chr1_4:1832109-1832128 | None:intergenic | 30.0% | |
!! | CTAATTCTGATAGTGGAAAT+GGG | + | chr1_4:1832368-1832387 | Msa0142910:CDS | 30.0% |
AAAGCCATCTAGAAAAAGAA+AGG | + | chr1_4:1832429-1832448 | Msa0142910:CDS | 30.0% | |
! | TTCTCCTTTCTTTTTCTAGA+TGG | - | chr1_4:1832436-1832455 | None:intergenic | 30.0% |
TTAAACGTTGATATTCGAGT+AGG | + | chr1_4:1832827-1832846 | Msa0142910:intron | 30.0% | |
ATAAGAAAAATACCTGGAGA+TGG | - | chr1_4:1833050-1833069 | None:intergenic | 30.0% | |
TTAGATGATCACAACCATTT+CGG | + | chr1_4:1833187-1833206 | Msa0142910:intron | 30.0% | |
ACGCTCACATATTTCAAAAA+AGG | + | chr1_4:1833224-1833243 | Msa0142910:intron | 30.0% | |
! | ATGATTTGAGCACATCATTT+TGG | - | chr1_4:1833322-1833341 | None:intergenic | 30.0% |
AGAATCATTACCCAAATCTT+CGG | - | chr1_4:1833529-1833548 | None:intergenic | 30.0% | |
TGATAGATCCTATTCAAGAA+TGG | + | chr1_4:1833548-1833567 | Msa0142910:CDS | 30.0% | |
GATAGATCCTATTCAAGAAT+GGG | + | chr1_4:1833549-1833568 | Msa0142910:CDS | 30.0% | |
GATATAACCCATTCTTGAAT+AGG | - | chr1_4:1833559-1833578 | None:intergenic | 30.0% | |
TGATCATCTTAGGTTTCAAT+CGG | + | chr1_4:1833749-1833768 | Msa0142910:CDS | 30.0% | |
TCTTTGAACATCATTCAGAT+TGG | - | chr1_4:1833787-1833806 | None:intergenic | 30.0% | |
!!! | CTCCTTCTTTTTTCAAGTAA+AGG | - | chr1_4:1833855-1833874 | None:intergenic | 30.0% |
TGTGAGTTCATGTTATATGT+AGG | - | chr1_4:1833969-1833988 | None:intergenic | 30.0% | |
ACATATAACATGAACTCACA+AGG | + | chr1_4:1833969-1833988 | Msa0142910:CDS | 30.0% | |
!! | TCTAATAATGTGCCATTTCA+AGG | + | chr1_4:1834011-1834030 | Msa0142910:CDS | 30.0% |
TTATTATCCCATCCTTGAAA+TGG | - | chr1_4:1834026-1834045 | None:intergenic | 30.0% | |
AATAACCATAACAACCATGA+TGG | + | chr1_4:1834041-1834060 | Msa0142910:CDS | 30.0% | |
AATTTCCATCATGGTTGTTA+TGG | - | chr1_4:1834049-1834068 | None:intergenic | 30.0% | |
TCACAACATGAATCATAGAA+GGG | - | chr1_4:1834106-1834125 | None:intergenic | 30.0% | |
TTCACAACATGAATCATAGA+AGG | - | chr1_4:1834107-1834126 | None:intergenic | 30.0% | |
TTCATCATATATACCTCATG+TGG | - | chr1_4:1834203-1834222 | None:intergenic | 30.0% | |
GGATCATAAGTTAAATGCAT+CGG | - | chr1_4:1834384-1834403 | None:intergenic | 30.0% | |
CAATTATATGCCAATTTCTC+TGG | + | chr1_4:1834450-1834469 | Msa0142910:CDS | 30.0% | |
ACATGTTCTATCATCATCGA+CGG | - | chr1_4:1831282-1831301 | None:intergenic | 35.0% | |
ATTCCTTTCATCACCATCTT+TGG | - | chr1_4:1832232-1832251 | None:intergenic | 35.0% | |
GTGATGAAAGGAATTGATCA+TGG | + | chr1_4:1832238-1832257 | Msa0142910:CDS | 35.0% | |
! | TGAAGGAGGTACAAATGATT+TGG | + | chr1_4:1832293-1832312 | Msa0142910:CDS | 35.0% |
GGAAGAAGAAAACTAGCAAA+CGG | + | chr1_4:1832329-1832348 | Msa0142910:CDS | 35.0% | |
CCATTTCCACTATCAGAATT+AGG | - | chr1_4:1832370-1832389 | None:intergenic | 35.0% | |
!! | CCTAATTCTGATAGTGGAAA+TGG | + | chr1_4:1832367-1832386 | Msa0142910:CDS | 35.0% |
TAGTGGAAATGGGAAACATT+CGG | + | chr1_4:1832378-1832397 | Msa0142910:CDS | 35.0% | |
CTTGCTGCTGTTAAACAATT+AGG | + | chr1_4:1832565-1832584 | Msa0142910:CDS | 35.0% | |
! | TAAACGTTGAGATTAGTCCT+AGG | + | chr1_4:1832749-1832768 | Msa0142910:intron | 35.0% |
! | AAACGTTGAGATTAGTCCTA+GGG | + | chr1_4:1832750-1832769 | Msa0142910:intron | 35.0% |
!!! | AGTTGTTATTTTGCTTGCAG+AGG | + | chr1_4:1832960-1832979 | Msa0142910:intron | 35.0% |
TGGATGATGAAAACCTTACA+AGG | + | chr1_4:1833010-1833029 | Msa0142910:intron | 35.0% | |
GGATGATGAAAACCTTACAA+GGG | + | chr1_4:1833011-1833030 | Msa0142910:intron | 35.0% | |
GTCATGTTTGGTATCTTTGT+CGG | - | chr1_4:1833108-1833127 | None:intergenic | 35.0% | |
TGATGTGTTAGTGTCATGTT+TGG | - | chr1_4:1833120-1833139 | None:intergenic | 35.0% | |
AACCATTTCGGCATAAAATC+TGG | + | chr1_4:1833199-1833218 | Msa0142910:intron | 35.0% | |
ACCATTTCGGCATAAAATCT+GGG | + | chr1_4:1833200-1833219 | Msa0142910:intron | 35.0% | |
!! | TCAAGAATGGGTTATATCAG+TGG | + | chr1_4:1833561-1833580 | Msa0142910:CDS | 35.0% |
GAGTTGTTCAAATTATGTGC+AGG | - | chr1_4:1833723-1833742 | None:intergenic | 35.0% | |
CATAATTTGAACAACTCGAC+AGG | + | chr1_4:1833726-1833745 | Msa0142910:CDS | 35.0% | |
AAAGAAGGAGCAATGACATT+TGG | + | chr1_4:1833865-1833884 | Msa0142910:CDS | 35.0% | |
! | TTTCTGGTAATTGCAGCATA+GGG | - | chr1_4:1833896-1833915 | None:intergenic | 35.0% |
AACTCTTACCTTCCAAAAGA+AGG | + | chr1_4:1833918-1833937 | Msa0142910:CDS | 35.0% | |
GAGTTCATGTTATATGTAGG+AGG | - | chr1_4:1833966-1833985 | None:intergenic | 35.0% | |
!! | ATAATGTGCCATTTCAAGGA+TGG | + | chr1_4:1834015-1834034 | Msa0142910:CDS | 35.0% |
!! | TAATGTGCCATTTCAAGGAT+GGG | + | chr1_4:1834016-1834035 | Msa0142910:CDS | 35.0% |
AAGGATGGTAATTTCCATCA+TGG | - | chr1_4:1834058-1834077 | None:intergenic | 35.0% | |
AAATTACCATCCTTCTCATG+TGG | + | chr1_4:1834064-1834083 | Msa0142910:CDS | 35.0% | |
CATGTTGTGAATGCTATTGA+AGG | + | chr1_4:1834116-1834135 | Msa0142910:CDS | 35.0% | |
GAATGCTATTGAAGGAAACT+TGG | + | chr1_4:1834124-1834143 | Msa0142910:CDS | 35.0% | |
CAATTATTGTGATCGTATCG+CGG | + | chr1_4:1834151-1834170 | Msa0142910:CDS | 35.0% | |
ATGAATAATCAGATGAAGGC+TGG | + | chr1_4:1834218-1834237 | Msa0142910:CDS | 35.0% | |
AATCAAGCTCATTAGACATG+TGG | - | chr1_4:1834250-1834269 | None:intergenic | 35.0% | |
TTATATGCCAATTTCTCTGG+TGG | + | chr1_4:1834453-1834472 | Msa0142910:CDS | 35.0% | |
TATATGCCAATTTCTCTGGT+GGG | + | chr1_4:1834454-1834473 | Msa0142910:CDS | 35.0% | |
!! | TTTTGGAGAGACTTCTCCAA+AGG | + | chr1_4:1831309-1831328 | Msa0142910:CDS | 40.0% |
!! | TACCATGGTATTGACACCTT+TGG | - | chr1_4:1831328-1831347 | None:intergenic | 40.0% |
CAATGTTCATATGCCAGACA+TGG | + | chr1_4:1832039-1832058 | Msa0142910:CDS | 40.0% | |
TTCATATGCCAGACATGGAT+GGG | + | chr1_4:1832044-1832063 | Msa0142910:CDS | 40.0% | |
TGAGCTTATTGGACTTGAGA+TGG | + | chr1_4:1832078-1832097 | Msa0142910:CDS | 40.0% | |
TGCGAATGATGATCCAAAGA+TGG | + | chr1_4:1832216-1832235 | Msa0142910:CDS | 40.0% | |
! | GATCCAAAGATGGTGATGAA+AGG | + | chr1_4:1832226-1832245 | Msa0142910:CDS | 40.0% |
GCTGAAACCTGTTACATTGA+AGG | + | chr1_4:1832276-1832295 | Msa0142910:CDS | 40.0% | |
GAAACCTGTTACATTGAAGG+AGG | + | chr1_4:1832279-1832298 | Msa0142910:CDS | 40.0% | |
TGTACCTCCTTCAATGTAAC+AGG | - | chr1_4:1832286-1832305 | None:intergenic | 40.0% | |
! | TGATTTGGCAACATGTAGTC+AGG | + | chr1_4:1832308-1832327 | Msa0142910:CDS | 40.0% |
! | GAAGAACGAAGATGATGATG+AGG | + | chr1_4:1832453-1832472 | Msa0142910:CDS | 40.0% |
! | TGATGATGAGGATGAGAATG+AGG | + | chr1_4:1832465-1832484 | Msa0142910:CDS | 40.0% |
TCGTGACAATGATGATTCGA+CGG | + | chr1_4:1832492-1832511 | Msa0142910:CDS | 40.0% | |
TAACAGCAGCAAGAAACTTG+CGG | - | chr1_4:1832558-1832577 | None:intergenic | 40.0% | |
! | TTTTGCGCATTGAAGATCGA+GGG | - | chr1_4:1832609-1832628 | None:intergenic | 40.0% |
! | TTTTTGCGCATTGAAGATCG+AGG | - | chr1_4:1832610-1832629 | None:intergenic | 40.0% |
! | AACGTTGAGATTAGTCCTAG+GGG | + | chr1_4:1832751-1832770 | Msa0142910:intron | 40.0% |
AAACCTTACAAGGGAGAATG+TGG | + | chr1_4:1833020-1833039 | Msa0142910:intron | 40.0% | |
AGCTAATATGGCCGAAGATT+TGG | + | chr1_4:1833515-1833534 | Msa0142910:CDS | 40.0% | |
GCTAATATGGCCGAAGATTT+GGG | + | chr1_4:1833516-1833535 | Msa0142910:CDS | 40.0% | |
! | ATGGGTTATATCAGTGGAGT+TGG | + | chr1_4:1833567-1833586 | Msa0142910:CDS | 40.0% |
TTCAGATCCTTTCCATCTAG+TGG | + | chr1_4:1833645-1833664 | Msa0142910:CDS | 40.0% | |
ACTCATACCACTAGATGGAA+AGG | - | chr1_4:1833655-1833674 | None:intergenic | 40.0% | |
CTACTACTCATACCACTAGA+TGG | - | chr1_4:1833660-1833679 | None:intergenic | 40.0% | |
TCCATGCAGATTAACACTAC+TGG | - | chr1_4:1833697-1833716 | None:intergenic | 40.0% | |
TGAGAGTCTACAGAAGGAAA+TGG | - | chr1_4:1833813-1833832 | None:intergenic | 40.0% | |
GAATGTTGAGAGTCTACAGA+AGG | - | chr1_4:1833819-1833838 | None:intergenic | 40.0% | |
!! | GTTTCTGGTAATTGCAGCAT+AGG | - | chr1_4:1833897-1833916 | None:intergenic | 40.0% |
! | GGAAGGTAAGAGTTTGTTTC+TGG | - | chr1_4:1833912-1833931 | None:intergenic | 40.0% |
! | GGACAAAACCTTCTTTTGGA+AGG | - | chr1_4:1833929-1833948 | None:intergenic | 40.0% |
! | GCATGGACAAAACCTTCTTT+TGG | - | chr1_4:1833933-1833952 | None:intergenic | 40.0% |
!! | CATGTGGTTGGTAGTTCAAT+AGG | + | chr1_4:1834080-1834099 | Msa0142910:CDS | 40.0% |
ACCTCATGTGGTTTCAATGA+CGG | - | chr1_4:1834191-1834210 | None:intergenic | 40.0% | |
CATGAGAGTCATGATCAAAC+CGG | + | chr1_4:1834283-1834302 | Msa0142910:CDS | 40.0% | |
GCAAGAACACGCATTCCAAT+AGG | - | chr1_4:1831260-1831279 | None:intergenic | 45.0% | |
!! | CTCCAAAGGTGTCAATACCA+TGG | + | chr1_4:1831323-1831342 | Msa0142910:CDS | 45.0% |
TGTTAGTGCACTTTGAGCAG+TGG | - | chr1_4:1831969-1831988 | None:intergenic | 45.0% | |
GTTCATATGCCAGACATGGA+TGG | + | chr1_4:1832043-1832062 | Msa0142910:CDS | 45.0% | |
AGCTTAAACCCATCCATGTC+TGG | - | chr1_4:1832055-1832074 | None:intergenic | 45.0% | |
GATGCGCCTAATTCTGATAG+TGG | + | chr1_4:1832361-1832380 | Msa0142910:CDS | 45.0% | |
GAAATGGGAAACATTCGGCT+GGG | + | chr1_4:1832383-1832402 | Msa0142910:CDS | 45.0% | |
! | AGAAGAAGCCTCGAGTTGTT+TGG | + | chr1_4:1832518-1832537 | Msa0142910:CDS | 45.0% |
ATTAGTCCTAGGGGTGAATG+TGG | + | chr1_4:1832760-1832779 | Msa0142910:intron | 45.0% | |
TAGCCACATTCTCCCTTGTA+AGG | - | chr1_4:1833026-1833045 | None:intergenic | 45.0% | |
! | GCCCAGATTTTATGCCGAAA+TGG | - | chr1_4:1833204-1833223 | None:intergenic | 45.0% |
GCACGTACACTTCAGATTGA+AGG | - | chr1_4:1833408-1833427 | None:intergenic | 45.0% | |
GGTTATATCAGTGGAGTTGG+TGG | + | chr1_4:1833570-1833589 | Msa0142910:CDS | 45.0% | |
! | AACTGTCTAGGGTCATTCAG+TGG | - | chr1_4:1833606-1833625 | None:intergenic | 45.0% |
TGCAGATTAACACTACTGGC+AGG | - | chr1_4:1833693-1833712 | None:intergenic | 45.0% | |
GCCAGTAGTGTTAATCTGCA+TGG | + | chr1_4:1833693-1833712 | Msa0142910:CDS | 45.0% | |
ACTCGACAGGTGATCATCTT+AGG | + | chr1_4:1833739-1833758 | Msa0142910:CDS | 45.0% | |
TACCATCCTTCTCATGTGGT+TGG | + | chr1_4:1834068-1834087 | Msa0142910:CDS | 45.0% | |
TACCAACCACATGAGAAGGA+TGG | - | chr1_4:1834073-1834092 | None:intergenic | 45.0% | |
GAACTACCAACCACATGAGA+AGG | - | chr1_4:1834077-1834096 | None:intergenic | 45.0% | |
TCCGTCATTGAAACCACATG+AGG | + | chr1_4:1834187-1834206 | Msa0142910:CDS | 45.0% | |
! | TAATGAGCTTGATTCGCTCG+AGG | + | chr1_4:1834256-1834275 | Msa0142910:CDS | 45.0% |
TGATGTCCCACCAGAGAAAT+TGG | - | chr1_4:1834463-1834482 | None:intergenic | 45.0% | |
!!! | TTTTTTGAAATATTTAAAAT+AGG | + | chr1_4:1831356-1831375 | Msa0142910:intron | 5.0% |
GGAAATGGGAAACATTCGGC+TGG | + | chr1_4:1832382-1832401 | Msa0142910:CDS | 50.0% | |
! | GAAGCCTCGAGTTGTTTGGT+CGG | + | chr1_4:1832522-1832541 | Msa0142910:CDS | 50.0% |
ACATAGCCACATTCACCCCT+AGG | - | chr1_4:1832769-1832788 | None:intergenic | 50.0% | |
ATTCAGATTGGCGCGAGCTA+TGG | - | chr1_4:1833775-1833794 | None:intergenic | 50.0% | |
TCAGCCGACCAAACAACTCG+AGG | - | chr1_4:1832529-1832548 | None:intergenic | 55.0% | |
! | GAATGTGGCTAGCCATCTCC+AGG | + | chr1_4:1833035-1833054 | Msa0142910:intron | 55.0% |
! | TAGGAGGCATAGCAGCAGCA+TGG | - | chr1_4:1833950-1833969 | None:intergenic | 55.0% |
GGGAAACATTCGGCTGGGAC+AGG | + | chr1_4:1832388-1832407 | Msa0142910:CDS | 60.0% | |
CTGGTGGGACATCAATGCCG+CGG | + | chr1_4:1834469-1834488 | Msa0142910:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 1831242 | 1834500 | 1831242 | ID=Msa0142910;Name=Msa0142910 |
chr1_4 | mRNA | 1831242 | 1834500 | 1831242 | ID=Msa0142910-mRNA-1;Parent=Msa0142910;Name=Msa0142910-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|0.83|1|1|6|0|517 |
chr1_4 | exon | 1831242 | 1831344 | 1831242 | ID=Msa0142910-mRNA-1:exon:673;Parent=Msa0142910-mRNA-1 |
chr1_4 | exon | 1831963 | 1832115 | 1831963 | ID=Msa0142910-mRNA-1:exon:674;Parent=Msa0142910-mRNA-1 |
chr1_4 | exon | 1832209 | 1832595 | 1832209 | ID=Msa0142910-mRNA-1:exon:675;Parent=Msa0142910-mRNA-1 |
chr1_4 | exon | 1832693 | 1832733 | 1832693 | ID=Msa0142910-mRNA-1:exon:676;Parent=Msa0142910-mRNA-1 |
chr1_4 | exon | 1833489 | 1834304 | 1833489 | ID=Msa0142910-mRNA-1:exon:677;Parent=Msa0142910-mRNA-1 |
chr1_4 | exon | 1834447 | 1834500 | 1834447 | ID=Msa0142910-mRNA-1:exon:678;Parent=Msa0142910-mRNA-1 |
chr1_4 | CDS | 1831242 | 1831344 | 1831242 | ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1 |
chr1_4 | CDS | 1831963 | 1832115 | 1831963 | ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1 |
chr1_4 | CDS | 1832209 | 1832595 | 1832209 | ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1 |
chr1_4 | CDS | 1832693 | 1832733 | 1832693 | ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1 |
chr1_4 | CDS | 1833489 | 1834304 | 1833489 | ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1 |
chr1_4 | CDS | 1834447 | 1834500 | 1834447 | ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1 |
Gene Sequence |
Protein sequence |