AlfalfaGEDB | Msa0142910

M. sativa cultivar zhongmu-4 / Msa0142910

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142910	KEH39871.1	89.642	531	40	4	1	517	152	681	0.0	929

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142910	sp\|Q6H805\|ORR24_ORYSJ	48.338	331	126	9	3	305	23	336	4.97e-88	286

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142910	A0A072VE88	89.642	531	40	4	1	517	152	681	0.0	929

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TFs/TRs:

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Gene ID	Type	Classification
Msa0142910	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142910	MtrunA17_Chr1g0149851	86.654	532	35	4	1	500	1	528	0.0	890
Msa0142910	MtrunA17_Chr1g0149841	60.728	522	112	15	1	455	1	496	1.29e-179	514
Msa0142910	MtrunA17_Chr7g0275891	64.162	346	82	5	1	320	1	330	1.33e-137	401
Msa0142910	MtrunA17_Chr3g0137101	48.618	434	165	14	3	401	6	416	1.65e-110	342
Msa0142910	MtrunA17_Chr7g0275401	59.236	314	104	4	1	313	1	291	9.97e-105	315
Msa0142910	MtrunA17_Chr1g0149831	75.393	191	33	3	64	243	1	188	4.45e-80	249
Msa0142910	MtrunA17_Chr2g0304841	46.667	345	145	9	3	313	16	355	9.45e-77	254
Msa0142910	MtrunA17_Chr4g0067981	50.198	253	112	5	2	242	28	278	3.56e-68	231
Msa0142910	MtrunA17_Chr2g0294911	48.450	258	117	4	1	246	25	278	1.27e-65	223
Msa0142910	MtrunA17_Chr3g0123131	47.984	248	109	4	5	236	13	256	4.41e-64	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142910	AT2G25180.1	52.258	310	127	6	3	297	11	314	5.29e-86	277
Msa0142910	AT4G31920.1	46.467	368	147	11	3	344	11	354	3.77e-82	266
Msa0142910	AT5G58080.1	42.998	407	154	16	3	375	12	374	1.16e-67	229
Msa0142910	AT3G16857.1	44.170	283	110	7	3	246	31	304	7.68e-64	220
Msa0142910	AT3G16857.2	44.170	283	110	7	3	246	31	304	1.29e-63	220
Msa0142910	AT1G67710.1	45.020	251	111	6	6	236	8	251	2.07e-55	194
Msa0142910	AT2G01760.1	42.164	268	135	6	1	249	3	269	9.17e-52	181
Msa0142910	AT3G16857.3	42.149	242	92	7	44	246	2	234	1.06e-46	172
Msa0142910	AT2G01760.2	37.919	298	137	7	1	251	3	299	7.01e-46	166
Msa0142910	AT5G49240.1	37.963	216	121	4	5	214	38	246	2.93e-37	139

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Find 111 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGAGCAATGACATT+TGG	0.435477	1_4:+1833865	Msa0142910:CDS
AAATTACCATCCTTCTCATG+TGG	0.631597	1_4:+1834064	Msa0142910:CDS
AACTCTTACCTTCCAAAAGA+AGG	0.429300	1_4:+1833918	Msa0142910:CDS
AACTGTCTAGGGTCATTCAG+TGG	0.690957	1_4:-1833603	None:intergenic
AAGGATGGTAATTTCCATCA+TGG	0.529123	1_4:-1834055	None:intergenic
AATAACCATAACAACCATGA+TGG	0.531658	1_4:+1834041	Msa0142910:CDS
AATCAAGCTCATTAGACATG+TGG	0.650925	1_4:-1834247	None:intergenic
AATTTCCATCATGGTTGTTA+TGG	0.300876	1_4:-1834046	None:intergenic
ACATATAACATGAACTCACA+AGG	0.670292	1_4:+1833969	Msa0142910:CDS
ACATGTTCTATCATCATCGA+CGG	0.636994	1_4:-1831279	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATTCAAATTACATTGCCT+AGG	-	chr1_4:1831412-1831431	None:intergenic	30.0%
TTTAGAGATTGCACATGATT+TGG	+	chr1_4:1831704-1831723	Msa0142910:intron	30.0%
ATCTAGTGAATCCAACAATT+TGG	-	chr1_4:1831819-1831838	None:intergenic	30.0%
TTTAAGCTTCTTGAGCTTAT+TGG	+	chr1_4:1832067-1832086	Msa0142910:CDS	30.0%
TTGCATAACTTACTTATGAC+AGG	-	chr1_4:1832109-1832128	None:intergenic	30.0%
AAAGCCATCTAGAAAAAGAA+AGG	+	chr1_4:1832429-1832448	Msa0142910:CDS	30.0%
TTAAACGTTGATATTCGAGT+AGG	+	chr1_4:1832827-1832846	Msa0142910:intron	30.0%
ATAAGAAAAATACCTGGAGA+TGG	-	chr1_4:1833050-1833069	None:intergenic	30.0%
TTAGATGATCACAACCATTT+CGG	+	chr1_4:1833187-1833206	Msa0142910:intron	30.0%
ACGCTCACATATTTCAAAAA+AGG	+	chr1_4:1833224-1833243	Msa0142910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	1831242	1834500	1831242	ID=Msa0142910;Name=Msa0142910
chr1_4	mRNA	1831242	1834500	1831242	ID=Msa0142910-mRNA-1;Parent=Msa0142910;Name=Msa0142910-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0\|0\|0\|0.83\|1\|1\|6\|0\|517
chr1_4	exon	1831242	1831344	1831242	ID=Msa0142910-mRNA-1:exon:673;Parent=Msa0142910-mRNA-1
chr1_4	exon	1831963	1832115	1831963	ID=Msa0142910-mRNA-1:exon:674;Parent=Msa0142910-mRNA-1
chr1_4	exon	1832209	1832595	1832209	ID=Msa0142910-mRNA-1:exon:675;Parent=Msa0142910-mRNA-1
chr1_4	exon	1832693	1832733	1832693	ID=Msa0142910-mRNA-1:exon:676;Parent=Msa0142910-mRNA-1
chr1_4	exon	1833489	1834304	1833489	ID=Msa0142910-mRNA-1:exon:677;Parent=Msa0142910-mRNA-1
chr1_4	exon	1834447	1834500	1834447	ID=Msa0142910-mRNA-1:exon:678;Parent=Msa0142910-mRNA-1
chr1_4	CDS	1831242	1831344	1831242	ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1
chr1_4	CDS	1831963	1832115	1831963	ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1
chr1_4	CDS	1832209	1832595	1832209	ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1
chr1_4	CDS	1832693	1832733	1832693	ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1
chr1_4	CDS	1833489	1834304	1833489	ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1
chr1_4	CDS	1834447	1834500	1834447	ID=Msa0142910-mRNA-1:cds;Parent=Msa0142910-mRNA-1

Gene Sequence

>Msa0142910

ATGAATGATCAATTTCCTATTGGAATGCGTGTTCTTGCCGTCGATGATGATAGAACATGTCTCAAGATTTTGGAGAGACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAGTGCACTAACAGCACTGAACTTGTTGAGAGAAAATGAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGGTTTAAGCTTCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATAATGTTTTCTGCGAATGATGATCCAAAGATGGTGATGAAAGGAATTGATCATGGTGCTTGTGATTATCTGCTGAAACCTGTTACATTGAAGGAGGTACAAATGATTTGGCAACATGTAGTCAGGAAGAAGAAAACTAGCAAACGGAGCAATCTTGATGCGCCTAATTCTGATAGTGGAAATGGGAAACATTCGGCTGGGACAGGCAATTCTGATCAAATTGAAAAGCCATCTAGAAAAAGAAAGGAGAAGAACGAAGATGATGATGAGGATGAGAATGAGGATGATCGTGACAATGATGATTCGACGGCACAGAAGAAGCCTCGAGTTGTTTGGTCGGCTGACTTACACCGCAAGTTTCTTGCTGCTGTTAAACAATTAGGCTTTGAAAATATTCGAGTAGGTTTGTTCCCATTTAATCAAGATATTCGAAAATACAGACTCTATCTGAAAAAACAAGCTAATATGGCCGAAGATTTGGGTAATGATTCTGATAGATCCTATTCAAGAATGGGTTATATCAGTGGAGTTGGTGGACATGTGCAGCCACTGAATGACCCTAGACAGTTTCATAATAATAACAGTGCTTTCAGATCCTTTCCATCTAGTGGTATGAGTAGTAGATTGTACACTCCTGCCAGTAGTGTTAATCTGCATGGATTTCCTGCACATAATTTGAACAACTCGACAGGTGATCATCTTAGGTTTCAATCGGCCATAGCTCGCGCCAATCTGAATGATGTTCAAAGAATGCCATTTCCTTCTGTAGACTCTCAACATTCACAGTTTTCTCATCCTTTACTTGAAAAAAGAAGGAGCAATGACATTTGGTCAAGCCCTATGCTGCAATTACCAGAAACAAACTCTTACCTTCCAAAAGAAGGTTTTGTCCATGCTGCTGCTATGCCTCCTACATATAACATGAACTCACAAGGTATTATTTTTAACAGCAGTTCTAATAATGTGCCATTTCAAGGATGGGATAATAACCATAACAACCATGATGGAAATTACCATCCTTCTCATGTGGTTGGTAGTTCAATAGGCCCTTCTATGATTCATGTTGTGAATGCTATTGAAGGAAACTTGGACAACAATTATTGTGATCGTATCGCGGAGTTACATGAAGTTCCGTCATTGAAACCACATGAGGTATATATGATGAATAATCAGATGAAGGCTGGAAATAGCCACATGTCTAATGAGCTTGATTCGCTCGAGGACGTCATGAGAGTCATGATCAAACCGAAACAATTATATGCCAATTTCTCTGGTGGGACATCAATGCCGCGGCAAGATTAG

Protein sequence

>Msa0142910

MNDQFPIGMRVLAVDDDRTCLKILERLLQRCQYHVTTAQSALTALNLLRENESNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVMKGIDHGACDYLLKPVTLKEVQMIWQHVVRKKKTSKRSNLDAPNSDSGNGKHSAGTGNSDQIEKPSRKRKEKNEDDDEDENEDDRDNDDSTAQKKPRVVWSADLHRKFLAAVKQLGFENIRVGLFPFNQDIRKYRLYLKKQANMAEDLGNDSDRSYSRMGYISGVGGHVQPLNDPRQFHNNNSAFRSFPSSGMSSRLYTPASSVNLHGFPAHNLNNSTGDHLRFQSAIARANLNDVQRMPFPSVDSQHSQFSHPLLEKRRSNDIWSSPMLQLPETNSYLPKEGFVHAAAMPPTYNMNSQGIIFNSSSNNVPFQGWDNNHNNHDGNYHPSHVVGSSIGPSMIHVVNAIEGNLDNNYCDRIAELHEVPSLKPHEVYMMNNQMKAGNSHMSNELDSLEDVMRVMIKPKQLYANFSGGTSMPRQD*