Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143050 | XP_003593965.2 | 75.486 | 257 | 59 | 1 | 1 | 257 | 1 | 253 | 6.49e-132 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143050 | G7IPZ8 | 75.486 | 257 | 59 | 1 | 1 | 257 | 1 | 253 | 3.10e-132 | 389 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0143050 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143050 | MtrunA17_Chr2g0286191 | 69.136 | 243 | 75 | 0 | 32 | 274 | 16 | 258 | 1.63e-110 | 323 |
| Msa0143050 | MtrunA17_Chr4g0067121 | 44.660 | 206 | 111 | 2 | 42 | 246 | 46 | 249 | 1.95e-52 | 175 |
| Msa0143050 | MtrunA17_Chr2g0295741 | 43.662 | 213 | 114 | 3 | 41 | 249 | 40 | 250 | 4.63e-52 | 174 |
| Msa0143050 | MtrunA17_Chr2g0296121 | 43.049 | 223 | 119 | 3 | 30 | 246 | 105 | 325 | 5.70e-49 | 168 |
| Msa0143050 | MtrunA17_Chr2g0295731 | 41.827 | 208 | 117 | 2 | 41 | 246 | 41 | 246 | 5.00e-48 | 164 |
| Msa0143050 | MtrunA17_Chr2g0295761 | 43.269 | 208 | 115 | 2 | 40 | 246 | 53 | 258 | 2.08e-45 | 157 |
| Msa0143050 | MtrunA17_Chr2g0296151 | 40.084 | 237 | 127 | 4 | 17 | 246 | 11 | 239 | 1.91e-44 | 154 |
| Msa0143050 | MtrunA17_Chr4g0067671 | 39.151 | 212 | 117 | 2 | 40 | 246 | 37 | 241 | 1.05e-42 | 149 |
| Msa0143050 | MtrunA17_Chr2g0296111 | 41.395 | 215 | 118 | 4 | 41 | 250 | 33 | 244 | 7.07e-42 | 147 |
| Msa0143050 | MtrunA17_Chr2g0296301 | 34.361 | 227 | 149 | 0 | 21 | 247 | 10 | 236 | 2.91e-41 | 146 |
| Msa0143050 | MtrunA17_Chr4g0001831 | 37.037 | 216 | 131 | 2 | 37 | 248 | 27 | 241 | 3.99e-38 | 137 |
| Msa0143050 | MtrunA17_Chr2g0296191 | 39.806 | 206 | 120 | 3 | 42 | 246 | 177 | 379 | 5.19e-36 | 136 |
| Msa0143050 | MtrunA17_Chr2g0296191 | 37.273 | 220 | 117 | 5 | 40 | 246 | 655 | 866 | 5.42e-32 | 124 |
| Msa0143050 | MtrunA17_Chr2g0296181 | 36.486 | 222 | 134 | 4 | 30 | 246 | 34 | 253 | 7.65e-36 | 132 |
| Msa0143050 | MtrunA17_Chr2g0295711 | 42.308 | 156 | 88 | 1 | 41 | 194 | 40 | 195 | 1.68e-35 | 126 |
| Msa0143050 | MtrunA17_Chr2g0296711 | 37.561 | 205 | 121 | 4 | 47 | 246 | 53 | 255 | 2.96e-35 | 131 |
| Msa0143050 | MtrunA17_Chr4g0067141 | 34.783 | 230 | 131 | 4 | 29 | 246 | 19 | 241 | 9.26e-35 | 129 |
| Msa0143050 | MtrunA17_Chr2g0296231 | 36.842 | 209 | 125 | 4 | 43 | 246 | 45 | 251 | 1.85e-33 | 125 |
| Msa0143050 | MtrunA17_Chr2g0296221 | 36.910 | 233 | 125 | 6 | 28 | 246 | 59 | 283 | 7.86e-33 | 124 |
| Msa0143050 | MtrunA17_Chr2g0296721 | 36.574 | 216 | 121 | 4 | 40 | 246 | 43 | 251 | 1.38e-32 | 123 |
| Msa0143050 | MtrunA17_Chr2g0315731 | 35.745 | 235 | 133 | 5 | 40 | 269 | 63 | 284 | 5.15e-32 | 122 |
| Msa0143050 | MtrunA17_Chr2g0295751 | 40.964 | 166 | 78 | 2 | 10 | 173 | 28 | 175 | 5.51e-32 | 123 |
| Msa0143050 | MtrunA17_Chr2g0296251 | 34.274 | 248 | 123 | 3 | 37 | 246 | 22 | 267 | 3.42e-31 | 119 |
| Msa0143050 | MtrunA17_Chr2g0296171 | 36.620 | 213 | 114 | 5 | 47 | 246 | 60 | 264 | 4.91e-31 | 119 |
| Msa0143050 | MtrunA17_Chr2g0296291 | 33.065 | 248 | 114 | 4 | 43 | 246 | 28 | 267 | 1.45e-30 | 118 |
| Msa0143050 | MtrunA17_Chr2g0296741 | 34.906 | 212 | 131 | 3 | 40 | 246 | 63 | 272 | 4.31e-30 | 117 |
| Msa0143050 | MtrunA17_Chr2g0296561 | 43.590 | 117 | 63 | 1 | 33 | 149 | 25 | 138 | 7.93e-24 | 94.4 |
| Msa0143050 | MtrunA17_Chr8g0377801 | 27.536 | 207 | 148 | 2 | 39 | 243 | 47 | 253 | 1.97e-16 | 78.6 |
| Msa0143050 | MtrunA17_Chr8g0377781 | 29.952 | 207 | 143 | 2 | 39 | 243 | 34 | 240 | 2.10e-16 | 78.2 |
| Msa0143050 | MtrunA17_Chr2g0296211 | 33.577 | 137 | 79 | 4 | 7 | 131 | 68 | 204 | 1.11e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143050 | AT5G07900.1 | 35.185 | 216 | 134 | 2 | 45 | 254 | 66 | 281 | 1.58e-39 | 142 |
| Msa0143050 | AT1G21150.1 | 37.129 | 202 | 124 | 1 | 47 | 245 | 55 | 256 | 2.36e-37 | 136 |
| Msa0143050 | AT1G21150.2 | 37.129 | 202 | 124 | 1 | 47 | 245 | 119 | 320 | 5.74e-37 | 136 |
| Msa0143050 | AT1G21150.3 | 36.000 | 225 | 136 | 2 | 24 | 245 | 1 | 220 | 1.90e-36 | 133 |
| Msa0143050 | AT1G61960.1 | 34.914 | 232 | 143 | 5 | 45 | 271 | 49 | 277 | 1.49e-35 | 132 |
| Msa0143050 | AT1G62085.1 | 37.313 | 201 | 121 | 3 | 48 | 245 | 55 | 253 | 3.45e-35 | 131 |
| Msa0143050 | AT1G62085.2 | 37.313 | 201 | 121 | 3 | 48 | 245 | 55 | 253 | 3.45e-35 | 131 |
| Msa0143050 | AT3G46950.1 | 35.294 | 204 | 125 | 3 | 41 | 243 | 45 | 242 | 1.01e-34 | 130 |
| Msa0143050 | AT1G61980.3 | 36.634 | 202 | 121 | 4 | 45 | 243 | 49 | 246 | 1.31e-34 | 129 |
| Msa0143050 | AT1G61980.2 | 36.634 | 202 | 121 | 4 | 45 | 243 | 49 | 246 | 1.31e-34 | 129 |
| Msa0143050 | AT1G61980.1 | 36.634 | 202 | 121 | 4 | 45 | 243 | 49 | 246 | 1.31e-34 | 129 |
| Msa0143050 | AT1G61970.2 | 36.279 | 215 | 122 | 5 | 45 | 251 | 49 | 256 | 7.69e-34 | 127 |
| Msa0143050 | AT1G61970.7 | 36.279 | 215 | 122 | 5 | 45 | 251 | 49 | 256 | 7.69e-34 | 127 |
| Msa0143050 | AT1G61970.6 | 36.279 | 215 | 122 | 5 | 45 | 251 | 49 | 256 | 7.69e-34 | 127 |
| Msa0143050 | AT1G61970.3 | 36.279 | 215 | 122 | 5 | 45 | 251 | 49 | 256 | 7.69e-34 | 127 |
| Msa0143050 | AT1G61970.5 | 36.279 | 215 | 122 | 5 | 45 | 251 | 49 | 256 | 7.69e-34 | 127 |
| Msa0143050 | AT1G61970.4 | 36.279 | 215 | 122 | 5 | 45 | 251 | 49 | 256 | 7.69e-34 | 127 |
| Msa0143050 | AT1G61970.1 | 36.279 | 215 | 122 | 5 | 45 | 251 | 49 | 256 | 7.69e-34 | 127 |
| Msa0143050 | AT1G62120.1 | 34.783 | 207 | 130 | 3 | 40 | 243 | 48 | 252 | 2.23e-33 | 126 |
| Msa0143050 | AT1G61990.2 | 35.500 | 200 | 121 | 3 | 45 | 244 | 49 | 240 | 2.19e-30 | 118 |
| Msa0143050 | AT1G61990.1 | 35.500 | 200 | 121 | 3 | 45 | 244 | 49 | 240 | 2.19e-30 | 118 |
| Msa0143050 | AT1G62110.1 | 34.272 | 213 | 131 | 3 | 38 | 245 | 42 | 250 | 6.25e-30 | 117 |
| Msa0143050 | AT5G23930.1 | 34.783 | 207 | 121 | 3 | 41 | 243 | 48 | 244 | 7.56e-30 | 117 |
| Msa0143050 | AT1G62150.1 | 31.553 | 206 | 134 | 4 | 42 | 243 | 52 | 254 | 7.41e-27 | 108 |
| Msa0143050 | AT1G62010.1 | 29.756 | 205 | 123 | 4 | 43 | 243 | 43 | 230 | 6.78e-22 | 94.7 |
| Msa0143050 | AT1G56380.2 | 30.469 | 128 | 89 | 0 | 38 | 165 | 17 | 144 | 2.24e-15 | 75.9 |
| Msa0143050 | AT1G56380.1 | 30.469 | 128 | 89 | 0 | 38 | 165 | 6 | 133 | 2.24e-15 | 75.9 |
| Msa0143050 | AT1G62490.1 | 27.619 | 210 | 95 | 6 | 42 | 243 | 92 | 252 | 6.05e-12 | 65.5 |
| Msa0143050 | AT5G64950.1 | 24.870 | 193 | 138 | 3 | 78 | 263 | 69 | 261 | 5.28e-11 | 62.8 |
Find 37 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAAGATAGCAGGATTTC+TGG | 0.169200 | 1_4:+1967186 | None:intergenic |
| ATTCAAATCCTGCTTCAAAA+TGG | 0.214854 | 1_4:-1967034 | Msa0143050:CDS |
| GAGAGTTTGGAAGCAGTTTC+TGG | 0.219164 | 1_4:+1967415 | None:intergenic |
| AACTATCTCATTCAAAATCT+TGG | 0.254769 | 1_4:-1967445 | Msa0143050:CDS |
| GAAACTGAATGTGAGGTTAT+TGG | 0.264454 | 1_4:+1967564 | None:intergenic |
| TGAGAGAAGAAAATTGAGTT+TGG | 0.273951 | 1_4:+1967246 | None:intergenic |
| ATGAAGATTGTGTTACTGTT+AGG | 0.281001 | 1_4:+1967536 | None:intergenic |
| AACAATGAAAACAGTTGTTT+TGG | 0.284531 | 1_4:+1966898 | None:intergenic |
| ACCAATTTCGAAACAAAATA+AGG | 0.302219 | 1_4:+1966993 | None:intergenic |
| TGGTTGTGAAAGTGTGATTT+TGG | 0.305443 | 1_4:+1967467 | None:intergenic |
| AAACTGAATGTGAGGTTATT+GGG | 0.314801 | 1_4:+1967565 | None:intergenic |
| TTGGTGGAAGTAAATGAATT+AGG | 0.343678 | 1_4:-1966929 | Msa0143050:CDS |
| TTCAAATCCTGCTTCAAAAT+GGG | 0.347056 | 1_4:-1967033 | Msa0143050:CDS |
| AAAATTGAGTTTGGGAAGAA+TGG | 0.364283 | 1_4:+1967255 | None:intergenic |
| GATTGATGTGTATAAGAAAT+GGG | 0.377187 | 1_4:-1966832 | Msa0143050:CDS |
| AGATTGATGTGTATAAGAAA+TGG | 0.401224 | 1_4:-1966833 | Msa0143050:CDS |
| AATAATGAAAGGACTGAGTC+TGG | 0.403254 | 1_4:+1967361 | None:intergenic |
| AAGAAGAAAGAAGAAGAAGT+TGG | 0.412178 | 1_4:+1967497 | None:intergenic |
| GAGAGAAGAAAATTGAGTTT+GGG | 0.413372 | 1_4:+1967247 | None:intergenic |
| ACTATCTCATTCAAAATCTT+GGG | 0.413660 | 1_4:-1967444 | Msa0143050:CDS |
| TGAAGATTGTGTTACTGTTA+GGG | 0.420451 | 1_4:+1967537 | None:intergenic |
| TTTGATGAGAGTTGATAGCT+GGG | 0.426496 | 1_4:+1967315 | None:intergenic |
| AATGCCTTCTCAAATCTTGA+AGG | 0.433670 | 1_4:+1966950 | None:intergenic |
| TTCAAGATTTGAGAAGGCAT+TGG | 0.516289 | 1_4:-1966948 | Msa0143050:CDS |
| CTTTCATTATTCAAATCACA+TGG | 0.524934 | 1_4:-1967349 | Msa0143050:CDS |
| AAGATTTGAGAAGGCATTGG+TGG | 0.528058 | 1_4:-1966945 | Msa0143050:CDS |
| TCAAATCCTGCTTCAAAATG+GGG | 0.541281 | 1_4:-1967032 | Msa0143050:CDS |
| AACTGAATGTGAGGTTATTG+GGG | 0.569321 | 1_4:+1967566 | None:intergenic |
| CATCAATCTTCCTTTCCCAA+AGG | 0.572836 | 1_4:+1966847 | None:intergenic |
| TTTGATAAAATGATAACAAG+GGG | 0.581767 | 1_4:+1967141 | None:intergenic |
| CATGTGATTTGAATAATGAA+AGG | 0.586958 | 1_4:+1967350 | None:intergenic |
| TTCTGGTGATGATTTGAACA+AGG | 0.591029 | 1_4:+1967203 | None:intergenic |
| GAAGCCTTCAAGATTTGAGA+AGG | 0.601085 | 1_4:-1966954 | Msa0143050:CDS |
| AAAATAAGGACTTTAGACTC+AGG | 0.629406 | 1_4:+1967007 | None:intergenic |
| ATTGATGTGTATAAGAAATG+GGG | 0.652614 | 1_4:-1966831 | Msa0143050:CDS |
| GATTTGAATATTCTGAGACG+TGG | 0.672392 | 1_4:+1967048 | None:intergenic |
| ATGTGTATAAGAAATGGGGT+TGG | 0.700509 | 1_4:-1966827 | Msa0143050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATAAAAAATCCTT+TGG | - | chr1_4:1967531-1967550 | Msa0143050:CDS | 10.0% |
| !! | AAATTAATAAAAAATCCTTT+GGG | - | chr1_4:1967532-1967551 | Msa0143050:CDS | 10.0% |
| !! | AAAATTAATAAAAAATCCTT+TGG | - | chr1_4:1967531-1967550 | Msa0143050:CDS | 10.0% |
| !! | AAATTAATAAAAAATCCTTT+GGG | - | chr1_4:1967532-1967551 | Msa0143050:CDS | 10.0% |
| !!! | TTTTGATAAAATGATAACAA+GGG | + | chr1_4:1967257-1967276 | None:intergenic | 15.0% |
| !!! | TTTTGATAAAATGATAACAA+GGG | + | chr1_4:1967257-1967276 | None:intergenic | 15.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | + | chr1_4:1967256-1967275 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | + | chr1_4:1967258-1967277 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | + | chr1_4:1967256-1967275 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | + | chr1_4:1967258-1967277 | None:intergenic | 20.0% |
| !! | AAGATTTTGAATGAGATAGT+TGG | + | chr1_4:1966950-1966969 | None:intergenic | 25.0% |
| ! | AACTATCTCATTCAAAATCT+TGG | - | chr1_4:1966949-1966968 | Msa0143050:CDS | 25.0% |
| ! | ACTATCTCATTCAAAATCTT+GGG | - | chr1_4:1966950-1966969 | Msa0143050:CDS | 25.0% |
| ! | CATGTGATTTGAATAATGAA+AGG | + | chr1_4:1967047-1967066 | None:intergenic | 25.0% |
| ! | CTTTCATTATTCAAATCACA+TGG | - | chr1_4:1967045-1967064 | Msa0143050:CDS | 25.0% |
| !! | GATCTAAAGAGAGAATTTTT+GGG | + | chr1_4:1967110-1967129 | None:intergenic | 25.0% |
| !! | AAGCTTTTATAAAAGATAGC+AGG | + | chr1_4:1967219-1967238 | None:intergenic | 25.0% |
| !! | TGCTATCTTTTATAAAAGCT+TGG | - | chr1_4:1967218-1967237 | Msa0143050:CDS | 25.0% |
| !!! | TCCTTATTTTGTTTCGAAAT+TGG | - | chr1_4:1967400-1967419 | Msa0143050:CDS | 25.0% |
| ! | ACCAATTTCGAAACAAAATA+AGG | + | chr1_4:1967404-1967423 | None:intergenic | 25.0% |
| !!! | ACAATGAAAACAGTTGTTTT+GGG | + | chr1_4:1967498-1967517 | None:intergenic | 25.0% |
| !! | AACAATGAAAACAGTTGTTT+TGG | + | chr1_4:1967499-1967518 | None:intergenic | 25.0% |
| !! | AATAAAAAATCCTTTGGGAA+AGG | - | chr1_4:1967537-1967556 | Msa0143050:CDS | 25.0% |
| ! | AGATTGATGTGTATAAGAAA+TGG | - | chr1_4:1967561-1967580 | Msa0143050:CDS | 25.0% |
| ! | GATTGATGTGTATAAGAAAT+GGG | - | chr1_4:1967562-1967581 | Msa0143050:CDS | 25.0% |
| ! | ATTGATGTGTATAAGAAATG+GGG | - | chr1_4:1967563-1967582 | Msa0143050:CDS | 25.0% |
| !! | AAGATTTTGAATGAGATAGT+TGG | + | chr1_4:1966950-1966969 | None:intergenic | 25.0% |
| ! | AACTATCTCATTCAAAATCT+TGG | - | chr1_4:1966949-1966968 | Msa0143050:CDS | 25.0% |
| ! | ACTATCTCATTCAAAATCTT+GGG | - | chr1_4:1966950-1966969 | Msa0143050:CDS | 25.0% |
| ! | CATGTGATTTGAATAATGAA+AGG | + | chr1_4:1967047-1967066 | None:intergenic | 25.0% |
| ! | CTTTCATTATTCAAATCACA+TGG | - | chr1_4:1967045-1967064 | Msa0143050:CDS | 25.0% |
| !! | GATCTAAAGAGAGAATTTTT+GGG | + | chr1_4:1967110-1967129 | None:intergenic | 25.0% |
| !! | AAGCTTTTATAAAAGATAGC+AGG | + | chr1_4:1967219-1967238 | None:intergenic | 25.0% |
| !! | TGCTATCTTTTATAAAAGCT+TGG | - | chr1_4:1967218-1967237 | Msa0143050:CDS | 25.0% |
| !!! | TCCTTATTTTGTTTCGAAAT+TGG | - | chr1_4:1967400-1967419 | Msa0143050:CDS | 25.0% |
| ! | ACCAATTTCGAAACAAAATA+AGG | + | chr1_4:1967404-1967423 | None:intergenic | 25.0% |
| !!! | ACAATGAAAACAGTTGTTTT+GGG | + | chr1_4:1967498-1967517 | None:intergenic | 25.0% |
| !! | AACAATGAAAACAGTTGTTT+TGG | + | chr1_4:1967499-1967518 | None:intergenic | 25.0% |
| !! | AATAAAAAATCCTTTGGGAA+AGG | - | chr1_4:1967537-1967556 | Msa0143050:CDS | 25.0% |
| ! | AGATTGATGTGTATAAGAAA+TGG | - | chr1_4:1967561-1967580 | Msa0143050:CDS | 25.0% |
| ! | GATTGATGTGTATAAGAAAT+GGG | - | chr1_4:1967562-1967581 | Msa0143050:CDS | 25.0% |
| ! | ATTGATGTGTATAAGAAATG+GGG | - | chr1_4:1967563-1967582 | Msa0143050:CDS | 25.0% |
| AAACTGAATGTGAGGTTATT+GGG | + | chr1_4:1966832-1966851 | None:intergenic | 30.0% | |
| ! | TGAAGATTGTGTTACTGTTA+GGG | + | chr1_4:1966860-1966879 | None:intergenic | 30.0% |
| ! | ATGAAGATTGTGTTACTGTT+AGG | + | chr1_4:1966861-1966880 | None:intergenic | 30.0% |
| AAGAAGAAAGAAGAAGAAGT+TGG | + | chr1_4:1966900-1966919 | None:intergenic | 30.0% | |
| ! | TTGAATTTTGTTGGAGAGTT+TGG | + | chr1_4:1966995-1967014 | None:intergenic | 30.0% |
| ! | GGATCTAAAGAGAGAATTTT+TGG | + | chr1_4:1967111-1967130 | None:intergenic | 30.0% |
| !!! | TTGGGAAGAATGGTTTTATT+GGG | + | chr1_4:1967132-1967151 | None:intergenic | 30.0% |
| !!! | TTTGGGAAGAATGGTTTTAT+TGG | + | chr1_4:1967133-1967152 | None:intergenic | 30.0% |
| AAAATTGAGTTTGGGAAGAA+TGG | + | chr1_4:1967142-1967161 | None:intergenic | 30.0% | |
| GAGAGAAGAAAATTGAGTTT+GGG | + | chr1_4:1967150-1967169 | None:intergenic | 30.0% | |
| TGAGAGAAGAAAATTGAGTT+TGG | + | chr1_4:1967151-1967170 | None:intergenic | 30.0% | |
| ! | ACTCAATTTTCTTCTCTCAA+AGG | - | chr1_4:1967152-1967171 | Msa0143050:CDS | 30.0% |
| ! | CTCAATTTTCTTCTCTCAAA+GGG | - | chr1_4:1967153-1967172 | Msa0143050:CDS | 30.0% |
| ATAAAAGATAGCAGGATTTC+TGG | + | chr1_4:1967211-1967230 | None:intergenic | 30.0% | |
| ATTCAAATCCTGCTTCAAAA+TGG | - | chr1_4:1967360-1967379 | Msa0143050:CDS | 30.0% | |
| TTCAAATCCTGCTTCAAAAT+GGG | - | chr1_4:1967361-1967380 | Msa0143050:CDS | 30.0% | |
| AAAATAAGGACTTTAGACTC+AGG | + | chr1_4:1967390-1967409 | None:intergenic | 30.0% | |
| TTGGTGGAAGTAAATGAATT+AGG | - | chr1_4:1967465-1967484 | Msa0143050:CDS | 30.0% | |
| !! | CAATGAAAACAGTTGTTTTG+GGG | + | chr1_4:1967497-1967516 | None:intergenic | 30.0% |
| AAACTGAATGTGAGGTTATT+GGG | + | chr1_4:1966832-1966851 | None:intergenic | 30.0% | |
| ! | TGAAGATTGTGTTACTGTTA+GGG | + | chr1_4:1966860-1966879 | None:intergenic | 30.0% |
| ! | ATGAAGATTGTGTTACTGTT+AGG | + | chr1_4:1966861-1966880 | None:intergenic | 30.0% |
| AAGAAGAAAGAAGAAGAAGT+TGG | + | chr1_4:1966900-1966919 | None:intergenic | 30.0% | |
| ! | TTGAATTTTGTTGGAGAGTT+TGG | + | chr1_4:1966995-1967014 | None:intergenic | 30.0% |
| ! | GGATCTAAAGAGAGAATTTT+TGG | + | chr1_4:1967111-1967130 | None:intergenic | 30.0% |
| !!! | TTGGGAAGAATGGTTTTATT+GGG | + | chr1_4:1967132-1967151 | None:intergenic | 30.0% |
| !!! | TTTGGGAAGAATGGTTTTAT+TGG | + | chr1_4:1967133-1967152 | None:intergenic | 30.0% |
| AAAATTGAGTTTGGGAAGAA+TGG | + | chr1_4:1967142-1967161 | None:intergenic | 30.0% | |
| GAGAGAAGAAAATTGAGTTT+GGG | + | chr1_4:1967150-1967169 | None:intergenic | 30.0% | |
| TGAGAGAAGAAAATTGAGTT+TGG | + | chr1_4:1967151-1967170 | None:intergenic | 30.0% | |
| ! | ACTCAATTTTCTTCTCTCAA+AGG | - | chr1_4:1967152-1967171 | Msa0143050:CDS | 30.0% |
| ! | CTCAATTTTCTTCTCTCAAA+GGG | - | chr1_4:1967153-1967172 | Msa0143050:CDS | 30.0% |
| ATAAAAGATAGCAGGATTTC+TGG | + | chr1_4:1967211-1967230 | None:intergenic | 30.0% | |
| ATTCAAATCCTGCTTCAAAA+TGG | - | chr1_4:1967360-1967379 | Msa0143050:CDS | 30.0% | |
| TTCAAATCCTGCTTCAAAAT+GGG | - | chr1_4:1967361-1967380 | Msa0143050:CDS | 30.0% | |
| AAAATAAGGACTTTAGACTC+AGG | + | chr1_4:1967390-1967409 | None:intergenic | 30.0% | |
| TTGGTGGAAGTAAATGAATT+AGG | - | chr1_4:1967465-1967484 | Msa0143050:CDS | 30.0% | |
| !! | CAATGAAAACAGTTGTTTTG+GGG | + | chr1_4:1967497-1967516 | None:intergenic | 30.0% |
| AACTGAATGTGAGGTTATTG+GGG | + | chr1_4:1966831-1966850 | None:intergenic | 35.0% | |
| GAAACTGAATGTGAGGTTAT+TGG | + | chr1_4:1966833-1966852 | None:intergenic | 35.0% | |
| !! | GGTTGTGAAAGTGTGATTTT+GGG | + | chr1_4:1966929-1966948 | None:intergenic | 35.0% |
| !! | TGGTTGTGAAAGTGTGATTT+TGG | + | chr1_4:1966930-1966949 | None:intergenic | 35.0% |
| !!! | GTCGTTGAGTTGAATTTTGT+TGG | + | chr1_4:1967004-1967023 | None:intergenic | 35.0% |
| AATAATGAAAGGACTGAGTC+TGG | + | chr1_4:1967036-1967055 | None:intergenic | 35.0% | |
| !! | TTTGATGAGAGTTGATAGCT+GGG | + | chr1_4:1967082-1967101 | None:intergenic | 35.0% |
| !!! | TTTTGATGAGAGTTGATAGC+TGG | + | chr1_4:1967083-1967102 | None:intergenic | 35.0% |
| ! | TTCTGGTGATGATTTGAACA+AGG | + | chr1_4:1967194-1967213 | None:intergenic | 35.0% |
| !! | GATTTGAATATTCTGAGACG+TGG | + | chr1_4:1967349-1967368 | None:intergenic | 35.0% |
| TCAAATCCTGCTTCAAAATG+GGG | - | chr1_4:1967362-1967381 | Msa0143050:CDS | 35.0% | |
| AATGCCTTCTCAAATCTTGA+AGG | + | chr1_4:1967447-1967466 | None:intergenic | 35.0% | |
| ! | TTCAAGATTTGAGAAGGCAT+TGG | - | chr1_4:1967446-1967465 | Msa0143050:CDS | 35.0% |
| ATGTGTATAAGAAATGGGGT+TGG | - | chr1_4:1967567-1967586 | Msa0143050:CDS | 35.0% | |
| AACTGAATGTGAGGTTATTG+GGG | + | chr1_4:1966831-1966850 | None:intergenic | 35.0% | |
| GAAACTGAATGTGAGGTTAT+TGG | + | chr1_4:1966833-1966852 | None:intergenic | 35.0% | |
| !! | GGTTGTGAAAGTGTGATTTT+GGG | + | chr1_4:1966929-1966948 | None:intergenic | 35.0% |
| !! | TGGTTGTGAAAGTGTGATTT+TGG | + | chr1_4:1966930-1966949 | None:intergenic | 35.0% |
| !!! | GTCGTTGAGTTGAATTTTGT+TGG | + | chr1_4:1967004-1967023 | None:intergenic | 35.0% |
| AATAATGAAAGGACTGAGTC+TGG | + | chr1_4:1967036-1967055 | None:intergenic | 35.0% | |
| !! | TTTGATGAGAGTTGATAGCT+GGG | + | chr1_4:1967082-1967101 | None:intergenic | 35.0% |
| !!! | TTTTGATGAGAGTTGATAGC+TGG | + | chr1_4:1967083-1967102 | None:intergenic | 35.0% |
| ! | TTCTGGTGATGATTTGAACA+AGG | + | chr1_4:1967194-1967213 | None:intergenic | 35.0% |
| !! | GATTTGAATATTCTGAGACG+TGG | + | chr1_4:1967349-1967368 | None:intergenic | 35.0% |
| TCAAATCCTGCTTCAAAATG+GGG | - | chr1_4:1967362-1967381 | Msa0143050:CDS | 35.0% | |
| AATGCCTTCTCAAATCTTGA+AGG | + | chr1_4:1967447-1967466 | None:intergenic | 35.0% | |
| ! | TTCAAGATTTGAGAAGGCAT+TGG | - | chr1_4:1967446-1967465 | Msa0143050:CDS | 35.0% |
| ATGTGTATAAGAAATGGGGT+TGG | - | chr1_4:1967567-1967586 | Msa0143050:CDS | 35.0% | |
| !!! | GGGTTTTGAAACTGAATGTG+AGG | + | chr1_4:1966840-1966859 | None:intergenic | 40.0% |
| GAAGCCTTCAAGATTTGAGA+AGG | - | chr1_4:1967440-1967459 | Msa0143050:CDS | 40.0% | |
| !! | AAGATTTGAGAAGGCATTGG+TGG | - | chr1_4:1967449-1967468 | Msa0143050:CDS | 40.0% |
| CATCAATCTTCCTTTCCCAA+AGG | + | chr1_4:1967550-1967569 | None:intergenic | 40.0% | |
| !!! | GGGTTTTGAAACTGAATGTG+AGG | + | chr1_4:1966840-1966859 | None:intergenic | 40.0% |
| GAAGCCTTCAAGATTTGAGA+AGG | - | chr1_4:1967440-1967459 | Msa0143050:CDS | 40.0% | |
| !! | AAGATTTGAGAAGGCATTGG+TGG | - | chr1_4:1967449-1967468 | Msa0143050:CDS | 40.0% |
| CATCAATCTTCCTTTCCCAA+AGG | + | chr1_4:1967550-1967569 | None:intergenic | 40.0% | |
| GAGAGTTTGGAAGCAGTTTC+TGG | + | chr1_4:1966982-1967001 | None:intergenic | 45.0% | |
| !! | GCAGTTTTTGAGAGATGCGA+TGG | + | chr1_4:1967304-1967323 | None:intergenic | 45.0% |
| GAGAGTTTGGAAGCAGTTTC+TGG | + | chr1_4:1966982-1967001 | None:intergenic | 45.0% | |
| !! | GCAGTTTTTGAGAGATGCGA+TGG | + | chr1_4:1967304-1967323 | None:intergenic | 45.0% |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | + | chr1_4:1967371-1967390 | None:intergenic | 50.0% |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | + | chr1_4:1967371-1967390 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 1966796 | 1967620 | 1966796 | ID=Msa0143050;Name=Msa0143050 |
| chr1_4 | mRNA | 1966796 | 1967620 | 1966796 | ID=Msa0143050-mRNA-1;Parent=Msa0143050;Name=Msa0143050-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|274 |
| chr1_4 | exon | 1966796 | 1967620 | 1966796 | ID=Msa0143050-mRNA-1:exon:736;Parent=Msa0143050-mRNA-1 |
| chr1_4 | CDS | 1966796 | 1967620 | 1966796 | ID=Msa0143050-mRNA-1:cds;Parent=Msa0143050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
