Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143060 | G7IPZ5 | 72.656 | 256 | 43 | 1 | 42 | 270 | 111 | 366 | 1.84e-127 | 375 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0143060 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143060 | MtrunA17_Chr2g0286191 | 72.656 | 256 | 43 | 1 | 42 | 270 | 111 | 366 | 3.55e-131 | 375 |
| Msa0143060 | MtrunA17_Chr2g0286221 | 63.190 | 163 | 33 | 1 | 132 | 267 | 11 | 173 | 1.18e-64 | 200 |
| Msa0143060 | MtrunA17_Chr2g0295731 | 39.442 | 251 | 121 | 4 | 42 | 263 | 129 | 377 | 1.50e-51 | 172 |
| Msa0143060 | MtrunA17_Chr4g0067121 | 39.044 | 251 | 122 | 4 | 42 | 263 | 132 | 380 | 1.11e-50 | 171 |
| Msa0143060 | MtrunA17_Chr2g0295741 | 39.526 | 253 | 118 | 5 | 42 | 263 | 128 | 376 | 6.25e-50 | 169 |
| Msa0143060 | MtrunA17_Chr2g0295761 | 39.300 | 257 | 114 | 6 | 42 | 263 | 140 | 389 | 6.54e-50 | 169 |
| Msa0143060 | MtrunA17_Chr2g0296121 | 40.239 | 251 | 119 | 4 | 42 | 263 | 208 | 456 | 6.46e-49 | 168 |
| Msa0143060 | MtrunA17_Chr2g0296151 | 39.442 | 251 | 121 | 4 | 42 | 263 | 122 | 370 | 2.44e-47 | 162 |
| Msa0143060 | MtrunA17_Chr2g0296711 | 37.218 | 266 | 123 | 7 | 42 | 270 | 135 | 393 | 8.54e-44 | 153 |
| Msa0143060 | MtrunA17_Chr2g0296181 | 40.088 | 227 | 129 | 5 | 42 | 263 | 133 | 357 | 2.80e-42 | 149 |
| Msa0143060 | MtrunA17_Chr2g0296111 | 39.147 | 258 | 113 | 6 | 42 | 263 | 121 | 370 | 5.14e-42 | 147 |
| Msa0143060 | MtrunA17_Chr2g0296301 | 34.000 | 250 | 136 | 3 | 42 | 262 | 116 | 365 | 3.94e-41 | 145 |
| Msa0143060 | MtrunA17_Chr2g0296291 | 34.646 | 254 | 132 | 6 | 42 | 263 | 147 | 398 | 1.13e-39 | 142 |
| Msa0143060 | MtrunA17_Chr4g0067141 | 34.231 | 260 | 129 | 6 | 42 | 267 | 124 | 375 | 6.08e-37 | 134 |
| Msa0143060 | MtrunA17_Chr2g0296191 | 34.118 | 255 | 127 | 5 | 42 | 262 | 262 | 509 | 1.14e-36 | 138 |
| Msa0143060 | MtrunA17_Chr2g0296191 | 33.591 | 259 | 126 | 8 | 41 | 260 | 743 | 994 | 2.32e-30 | 119 |
| Msa0143060 | MtrunA17_Chr2g0296231 | 35.521 | 259 | 121 | 8 | 42 | 263 | 131 | 380 | 7.56e-36 | 132 |
| Msa0143060 | MtrunA17_Chr2g0296251 | 35.000 | 260 | 123 | 7 | 42 | 263 | 147 | 398 | 1.40e-35 | 131 |
| Msa0143060 | MtrunA17_Chr2g0296721 | 33.858 | 254 | 135 | 5 | 41 | 263 | 131 | 382 | 7.58e-35 | 129 |
| Msa0143060 | MtrunA17_Chr2g0315731 | 33.852 | 257 | 132 | 7 | 41 | 263 | 151 | 403 | 1.25e-34 | 129 |
| Msa0143060 | MtrunA17_Chr2g0296741 | 32.824 | 262 | 128 | 8 | 41 | 263 | 151 | 403 | 3.75e-34 | 127 |
| Msa0143060 | MtrunA17_Chr2g0296221 | 34.733 | 262 | 125 | 8 | 41 | 263 | 160 | 414 | 8.77e-34 | 127 |
| Msa0143060 | MtrunA17_Chr2g0296171 | 33.712 | 264 | 129 | 8 | 41 | 265 | 141 | 397 | 1.62e-32 | 123 |
| Msa0143060 | MtrunA17_Chr4g0067671 | 34.583 | 240 | 114 | 7 | 42 | 246 | 124 | 355 | 6.80e-31 | 117 |
| Msa0143060 | MtrunA17_Chr2g0296161 | 42.308 | 156 | 61 | 3 | 137 | 263 | 3 | 158 | 2.76e-28 | 106 |
| Msa0143060 | MtrunA17_Chr4g0001831 | 29.688 | 256 | 146 | 5 | 42 | 264 | 117 | 371 | 8.74e-28 | 109 |
| Msa0143060 | MtrunA17_Chr2g0296551 | 36.813 | 182 | 84 | 4 | 111 | 263 | 5 | 184 | 1.35e-27 | 105 |
| Msa0143060 | MtrunA17_Chr2g0296131 | 39.869 | 153 | 63 | 3 | 139 | 262 | 9 | 161 | 5.89e-27 | 103 |
| Msa0143060 | MtrunA17_Chr2g0296211 | 34.483 | 203 | 90 | 5 | 104 | 263 | 156 | 358 | 5.00e-26 | 105 |
| Msa0143060 | MtrunA17_Chr2g0296701 | 40.789 | 152 | 61 | 3 | 141 | 263 | 5 | 156 | 5.01e-25 | 98.2 |
| Msa0143060 | MtrunA17_Chr2g0296751 | 40.157 | 127 | 48 | 2 | 165 | 263 | 3 | 129 | 7.59e-20 | 84.3 |
| Msa0143060 | MtrunA17_Chr2g0295721 | 54.167 | 72 | 32 | 1 | 137 | 207 | 3 | 74 | 5.77e-17 | 75.1 |
| Msa0143060 | MtrunA17_Chr8g0377781 | 25.806 | 248 | 150 | 6 | 42 | 257 | 123 | 368 | 5.50e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143060 | AT5G07900.1 | 32.143 | 252 | 138 | 5 | 42 | 260 | 148 | 399 | 8.93e-35 | 129 |
| Msa0143060 | AT1G21150.3 | 26.172 | 256 | 156 | 4 | 42 | 264 | 99 | 354 | 1.95e-19 | 87.0 |
| Msa0143060 | AT1G21150.1 | 26.172 | 256 | 156 | 4 | 42 | 264 | 135 | 390 | 3.20e-19 | 86.7 |
| Msa0143060 | AT1G21150.2 | 26.172 | 256 | 156 | 4 | 42 | 264 | 199 | 454 | 4.12e-19 | 86.7 |
| Msa0143060 | AT3G46950.1 | 30.303 | 165 | 105 | 5 | 42 | 203 | 131 | 288 | 2.75e-12 | 66.6 |
| Msa0143060 | AT1G62010.1 | 27.811 | 169 | 106 | 5 | 42 | 203 | 117 | 276 | 4.89e-11 | 62.8 |
Find 42 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTCCCATACGGATTT+TGG | 0.131006 | 1_4:+1972602 | None:intergenic |
| AGACAACATAAGAGGATTTC+TGG | 0.180313 | 1_4:+1972934 | None:intergenic |
| ATTCAATTCCTGCTTCAAAA+TGG | 0.189508 | 1_4:-1972782 | Msa0143060:CDS |
| GATGCTTCAACTTTCAAATA+AGG | 0.222209 | 1_4:-1972219 | None:intergenic |
| TCAATCCAAAGGTTTGATTA+AGG | 0.262442 | 1_4:-1972355 | Msa0143060:CDS |
| GAGATGGGAATTTAGAATAA+AGG | 0.311834 | 1_4:+1972810 | None:intergenic |
| TTCAATTCCTGCTTCAAAAT+GGG | 0.338390 | 1_4:-1972781 | Msa0143060:CDS |
| AGTATTTGAGAAGGCAGTTT+TGG | 0.367653 | 1_4:-1972693 | Msa0143060:CDS |
| GATTAATGCGTATAAGAAAT+GGG | 0.369032 | 1_4:-1972579 | Msa0143060:CDS |
| AGATTAATGCGTATAAGAAA+TGG | 0.381339 | 1_4:-1972580 | Msa0143060:CDS |
| ATAATGGAGAAAGACATAAA+TGG | 0.403120 | 1_4:-1976806 | Msa0143060:CDS |
| AGCATCCTTAATCAAACCTT+TGG | 0.408692 | 1_4:+1972350 | None:intergenic |
| AAGCTTTGAGACAACATAAG+AGG | 0.427786 | 1_4:+1972926 | None:intergenic |
| TCTTATGTTGTCTCAAAGCT+TGG | 0.442901 | 1_4:-1972924 | Msa0143060:CDS |
| TCTTAGCATGTAGTGCGATA+AGG | 0.479997 | 1_4:+1972630 | None:intergenic |
| TTGAAATTTCTTCAATCCAA+AGG | 0.481678 | 1_4:-1972366 | Msa0143060:CDS |
| CAGAGACTTTGAAAGGTGTA+GGG | 0.502615 | 1_4:+1972322 | None:intergenic |
| GCTGAAAGCTTAAGATCTAA+AGG | 0.506394 | 1_4:+1976731 | None:intergenic |
| ATTAATCTTCCTTTCCCATA+CGG | 0.515016 | 1_4:+1972595 | None:intergenic |
| TCAATTCCTGCTTCAAAATG+GGG | 0.519084 | 1_4:-1972780 | Msa0143060:CDS |
| GGCGTAGCCGAGTGGAAAGA+TGG | 0.539689 | 1_4:+1976752 | None:intergenic |
| GTCCAAAATCCGTATGGGAA+AGG | 0.543559 | 1_4:-1972604 | Msa0143060:CDS |
| ACTGCCTTCTCAAATACTGC+AGG | 0.547454 | 1_4:+1972698 | None:intergenic |
| AGATTAGTCCAAAATCCGTA+TGG | 0.549136 | 1_4:-1972610 | Msa0143060:CDS |
| GCCGAGTGGAAAGATGGTAT+TGG | 0.560800 | 1_4:+1976758 | None:intergenic |
| GAAGTATCCATGGTGTATGT+TGG | 0.562557 | 1_4:-1972522 | Msa0143060:CDS |
| ATGGTGTATGTTGGCATCTG+TGG | 0.563796 | 1_4:-1972513 | Msa0143060:CDS |
| TCAGAGACTTTGAAAGGTGT+AGG | 0.564549 | 1_4:+1972321 | None:intergenic |
| TTTGATAAAATGATAACAAG+GGG | 0.581767 | 1_4:+1972889 | None:intergenic |
| AATTTCAACGCAAAAGCCCT+AGG | 0.586081 | 1_4:+1972381 | None:intergenic |
| GATTAGTCCAAAATCCGTAT+GGG | 0.594092 | 1_4:-1972609 | Msa0143060:CDS |
| ATTAATGCGTATAAGAAATG+GGG | 0.599170 | 1_4:-1972578 | Msa0143060:CDS |
| ACCAATACCATCTTTCCACT+CGG | 0.606587 | 1_4:-1976759 | Msa0143060:CDS |
| GAAACCTGCAGTATTTGAGA+AGG | 0.606941 | 1_4:-1972702 | Msa0143060:CDS |
| GAGATATGTGAATTGCTATG+AGG | 0.610774 | 1_4:-1972283 | Msa0143060:CDS |
| AGATCCTCAGAGACTTTGAA+AGG | 0.621290 | 1_4:+1972315 | None:intergenic |
| ATGCGTATAAGAAATGGGGT+TGG | 0.624037 | 1_4:-1972574 | Msa0143060:CDS |
| GATCTAAAGGCGTAGCCGAG+TGG | 0.640594 | 1_4:+1976744 | None:intergenic |
| AGAGACTTTGAAAGGTGTAG+GGG | 0.645255 | 1_4:+1972323 | None:intergenic |
| TACACCTTTCAAAGTCTCTG+AGG | 0.664130 | 1_4:-1972319 | Msa0143060:CDS |
| ACAAGAGCAATGTTTGAGAG+CGG | 0.670001 | 1_4:+1972835 | None:intergenic |
| ACAGATGCCAACATACACCA+TGG | 0.670800 | 1_4:+1972515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTATTAGAGTTATAAA+GGG | + | chr1_4:1972471-1972490 | None:intergenic | 15.0% |
| !! | TAGTATTATTAGAGTTATAA+AGG | + | chr1_4:1972472-1972491 | None:intergenic | 15.0% |
| !! | AAGAAAAATGTACAAATAAA+GGG | + | chr1_4:1972528-1972547 | None:intergenic | 15.0% |
| !! | TAAGAAAAATGTACAAATAA+AGG | + | chr1_4:1972529-1972548 | None:intergenic | 15.0% |
| !!! | ATAATATCCCAAAATTTTAA+AGG | - | chr1_4:1972614-1972633 | Msa0143060:CDS | 15.0% |
| !!! | AATTTTAAATGAATTGGATA+AGG | + | chr1_4:1973210-1973229 | None:intergenic | 15.0% |
| !!! | AAACACAATTTTAAATGAAT+TGG | + | chr1_4:1973216-1973235 | None:intergenic | 15.0% |
| !!! | AAAATTGTGTTTTTTTTCTT+CGG | - | chr1_4:1973224-1973243 | Msa0143060:intron | 15.0% |
| !!! | ATAAAATATTTGTTTTGGTT+CGG | + | chr1_4:1973585-1973604 | None:intergenic | 15.0% |
| !!! | ATTGGATAAAATATTTGTTT+TGG | + | chr1_4:1973590-1973609 | None:intergenic | 15.0% |
| !!! | ATAAAAGTGATTTTATTCAT+TGG | + | chr1_4:1973608-1973627 | None:intergenic | 15.0% |
| !!! | TGAATAAGTTATTTTGAAAA+AGG | + | chr1_4:1975040-1975059 | None:intergenic | 15.0% |
| !!! | TAAATAAGTTTTGAATAAGT+TGG | - | chr1_4:1974790-1974809 | Msa0143060:intron | 15.0% |
| !!! | TTTTGATAAAATGATAACAA+GGG | + | chr1_4:1976139-1976158 | None:intergenic | 15.0% |
| !! | AGAAAAATGTACAAATAAAG+GGG | + | chr1_4:1972527-1972546 | None:intergenic | 20.0% |
| !! | GTGAAATAAAACTCAATAAT+CGG | - | chr1_4:1972555-1972574 | Msa0143060:CDS | 20.0% |
| !! | TGAAATAAAACTCAATAATC+GGG | - | chr1_4:1972556-1972575 | Msa0143060:CDS | 20.0% |
| !! | AATTAACCTAGATAAAACTT+AGG | - | chr1_4:1972822-1972841 | Msa0143060:CDS | 20.0% |
| !! | ATTAACCTAGATAAAACTTA+GGG | - | chr1_4:1972823-1972842 | Msa0143060:CDS | 20.0% |
| !! | ACTTTGGTAAAAAATTCTTA+AGG | + | chr1_4:1972908-1972927 | None:intergenic | 20.0% |
| !!! | AATTTCTAAGATACAAACTT+TGG | + | chr1_4:1972924-1972943 | None:intergenic | 20.0% |
| !! | GAAATTATAATGAAATCTCT+TGG | - | chr1_4:1973156-1973175 | Msa0143060:intron | 20.0% |
| !!! | TTTTAGATGTTGATTTAGTT+CGG | - | chr1_4:1973248-1973267 | Msa0143060:intron | 20.0% |
| !!! | TAGTTCGGTTTTTTATTTTT+CGG | - | chr1_4:1973263-1973282 | Msa0143060:intron | 20.0% |
| !!! | TGAATGAGTTATTTTGAAAA+AGG | + | chr1_4:1973894-1973913 | None:intergenic | 20.0% |
| !! | TTTATGTAAAACAGCTTATT+AGG | - | chr1_4:1974041-1974060 | Msa0143060:intron | 20.0% |
| !! | AACAACTTATTTATGCAAAA+CGG | - | chr1_4:1974092-1974111 | Msa0143060:intron | 20.0% |
| !! | AACAACTTATTTATGCAAAA+CGG | - | chr1_4:1974092-1974111 | Msa0143060:intron | 20.0% |
| !! | ATTTACGTAAAACAACTATT+AGG | - | chr1_4:1974277-1974296 | Msa0143060:intron | 20.0% |
| !!! | TTTGAGTAAGTTATTTTGAA+AGG | + | chr1_4:1974307-1974326 | None:intergenic | 20.0% |
| !! | TTTATGTAAAACAGCTTATT+AGG | - | chr1_4:1974041-1974060 | Msa0143060:intron | 20.0% |
| !!! | TGTTTTGAATAAGTTTTGAA+GGG | + | chr1_4:1974625-1974644 | None:intergenic | 20.0% |
| !!! | TGAATAAGTTGTTTTGAAAA+AGG | - | chr1_4:1974862-1974881 | Msa0143060:intron | 20.0% |
| !! | TTTACACAAAACAACTTATT+AGG | + | chr1_4:1974952-1974971 | None:intergenic | 20.0% |
| !! | TTTACTTAAAACAGCTTATT+AGG | + | chr1_4:1975010-1975029 | None:intergenic | 20.0% |
| !!! | AAGATGTTTTGTGTAAATAA+CGG | - | chr1_4:1975130-1975149 | Msa0143060:intron | 20.0% |
| !! | TTATGCAAAAACAACTTATT+AGG | + | chr1_4:1975276-1975295 | None:intergenic | 20.0% |
| !! | TTTGAATAAGTTGTTTGAAA+AGG | - | chr1_4:1975304-1975323 | Msa0143060:intron | 20.0% |
| !!! | AGTGTTTTGAATAAGTTATT+TGG | - | chr1_4:1975356-1975375 | Msa0143060:intron | 20.0% |
| !! | AAAGAAGGAAATTGAATTTA+GGG | + | chr1_4:1976031-1976050 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | + | chr1_4:1976138-1976157 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | + | chr1_4:1976140-1976159 | None:intergenic | 20.0% |
| !!! | AAAAAAACAATTTTGGATTC+AGG | + | chr1_4:1976272-1976291 | None:intergenic | 20.0% |
| !!! | TCGAAACAAAAAAACAATTT+TGG | + | chr1_4:1976279-1976298 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTGTTTCGAAAT+TGG | - | chr1_4:1976282-1976301 | Msa0143060:intron | 20.0% |
| ! | CATCGAAAAAAGAATTATAG+CGG | + | chr1_4:1972325-1972344 | None:intergenic | 25.0% |
| !! | TTGAAATAGCTCAGTATTTT+TGG | + | chr1_4:1972400-1972419 | None:intergenic | 25.0% |
| ! | GGAAATGGAATATATTGAAT+TGG | + | chr1_4:1972506-1972525 | None:intergenic | 25.0% |
| ! | TTAACTCAGTCTAATTAACT+AGG | - | chr1_4:1972733-1972752 | Msa0143060:CDS | 25.0% |
| ! | TTAACCTAGATAAAACTTAG+GGG | - | chr1_4:1972824-1972843 | Msa0143060:CDS | 25.0% |
| ! | TATAATGAAATCTCTTGGAT+TGG | - | chr1_4:1973161-1973180 | Msa0143060:intron | 25.0% |
| ! | GCGTTTATATTAGATTGAAT+TGG | - | chr1_4:1973296-1973315 | Msa0143060:intron | 25.0% |
| ! | GTTTGGTTAATAGGTAAAAA+TGG | + | chr1_4:1973559-1973578 | None:intergenic | 25.0% |
| ! | TTTACATACAACAGCTTATT+AGG | - | chr1_4:1973864-1973883 | Msa0143060:intron | 25.0% |
| ! | TTTATGCAAAACGACTTATT+AGG | - | chr1_4:1973924-1973943 | Msa0143060:intron | 25.0% |
| ! | AACAGCTTATTTATGCAAAA+CGG | - | chr1_4:1973915-1973934 | Msa0143060:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr1_4:1974537-1974556 | Msa0143060:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr1_4:1974537-1974556 | Msa0143060:intron | 25.0% |
| !!! | CTGTTTTGAATAAGTTTTGA+AGG | + | chr1_4:1974626-1974645 | None:intergenic | 25.0% |
| ! | TATATGCAAAACGACTTATT+AGG | - | chr1_4:1974650-1974669 | Msa0143060:intron | 25.0% |
| ! | TTATGCAAAAACAGCTTATT+AGG | - | chr1_4:1974713-1974732 | Msa0143060:intron | 25.0% |
| ! | TTATGCAAAAACAGCTTATT+AGG | + | chr1_4:1974713-1974732 | None:intergenic | 25.0% |
| ! | TTTACACAAAACAGCTTATT+AGG | + | chr1_4:1975391-1975410 | None:intergenic | 25.0% |
| ! | ATTTACGTAAACAGCTTATT+AGG | + | chr1_4:1975450-1975469 | None:intergenic | 25.0% |
| !! | AGATGTTTTGTGTAAATAAG+CGG | - | chr1_4:1975569-1975588 | Msa0143060:intron | 25.0% |
| ! | TAATTGGATTCATACCATTA+GGG | + | chr1_4:1975628-1975647 | None:intergenic | 25.0% |
| ! | ATAATTGGATTCATACCATT+AGG | + | chr1_4:1975629-1975648 | None:intergenic | 25.0% |
| ! | AACTGAGAAGATAAGATAAT+TGG | + | chr1_4:1975644-1975663 | None:intergenic | 25.0% |
| ! | AGTTAGTAATAGTGAAACAA+GGG | - | chr1_4:1975660-1975679 | Msa0143060:intron | 25.0% |
| ! | AAGTAACAAAGCATGATAAT+TGG | + | chr1_4:1975700-1975719 | None:intergenic | 25.0% |
| ! | TTTGATGAGAGATGATAATT+GGG | + | chr1_4:1975965-1975984 | None:intergenic | 25.0% |
| !! | TTTTGATGAGAGATGATAAT+TGG | + | chr1_4:1975966-1975985 | None:intergenic | 25.0% |
| ! | GAAAGAAGGAAATTGAATTT+AGG | + | chr1_4:1976032-1976051 | None:intergenic | 25.0% |
| ! | ATTCAATTTCCTTCTTTCTA+AGG | - | chr1_4:1976034-1976053 | Msa0143060:intron | 25.0% |
| ! | TTCAATTTCCTTCTTTCTAA+GGG | - | chr1_4:1976035-1976054 | Msa0143060:intron | 25.0% |
| !!! | GGAATTGAATATTTTGAGAT+GGG | + | chr1_4:1976232-1976251 | None:intergenic | 25.0% |
| !!! | AGGAATTGAATATTTTGAGA+TGG | + | chr1_4:1976233-1976252 | None:intergenic | 25.0% |
| !!! | GTTTTGGAAGTAAAACAATT+AGG | - | chr1_4:1976347-1976366 | Msa0143060:intron | 25.0% |
| ! | ATAAGGAAAAACGTATTGTT+AGG | + | chr1_4:1976380-1976399 | None:intergenic | 25.0% |
| ! | AGATTAATGCGTATAAGAAA+TGG | - | chr1_4:1976444-1976463 | Msa0143060:intron | 25.0% |
| ! | GATTAATGCGTATAAGAAAT+GGG | - | chr1_4:1976445-1976464 | Msa0143060:intron | 25.0% |
| ! | ATTAATGCGTATAAGAAATG+GGG | - | chr1_4:1976446-1976465 | Msa0143060:intron | 25.0% |
| ! | TTGAAATTTCTTCAATCCAA+AGG | - | chr1_4:1976658-1976677 | Msa0143060:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGCAAA+TGG | + | chr1_4:1972379-1972398 | None:intergenic | 30.0% |
| AGAGTTATAAAGGGAAAAAG+TGG | + | chr1_4:1972462-1972481 | None:intergenic | 30.0% | |
| ATGTACAAATAAAGGGGAAA+TGG | + | chr1_4:1972521-1972540 | None:intergenic | 30.0% | |
| ATAAAACTCAATAATCGGGA+CGG | - | chr1_4:1972560-1972579 | Msa0143060:CDS | 30.0% | |
| !!! | AGTTGGGCCTTTAAAATTTT+GGG | + | chr1_4:1972624-1972643 | None:intergenic | 30.0% |
| !!! | TAGTTGGGCCTTTAAAATTT+TGG | + | chr1_4:1972625-1972644 | None:intergenic | 30.0% |
| TTAAACTCAAAGCCTAAACT+AGG | + | chr1_4:1972679-1972698 | None:intergenic | 30.0% | |
| AGCTTACAAAACTCATCTTA+TGG | - | chr1_4:1972847-1972866 | Msa0143060:CDS | 30.0% | |
| TGGTGTAAACAATACAATTC+AGG | + | chr1_4:1972966-1972985 | None:intergenic | 30.0% | |
| TACACTTCATATACAATCAG+TGG | + | chr1_4:1972986-1973005 | None:intergenic | 30.0% | |
| !!! | CGGTTTTTTATTTTTCGGTT+CGG | - | chr1_4:1973268-1973287 | Msa0143060:intron | 30.0% |
| AACATCAACAATGGTATGTA+GGG | - | chr1_4:1973408-1973427 | Msa0143060:intron | 30.0% | |
| TTTATGCAAAACGGCTTATT+AGG | - | chr1_4:1974101-1974120 | Msa0143060:intron | 30.0% | |
| ATTTATGCAAAACGGCATAT+AGG | - | chr1_4:1974159-1974178 | Msa0143060:intron | 30.0% | |
| AATTGGATTCATACCATTAG+GGG | + | chr1_4:1975627-1975646 | None:intergenic | 30.0% | |
| CAGTTAGTAATAGTGAAACA+AGG | - | chr1_4:1975659-1975678 | Msa0143060:intron | 30.0% | |
| !!! | TATTGAGGTTTTGAATGAGA+GGG | + | chr1_4:1975749-1975768 | None:intergenic | 30.0% |
| !!! | TTATTGAGGTTTTGAATGAG+AGG | + | chr1_4:1975750-1975769 | None:intergenic | 30.0% |
| AAGAAGATGAAGAGTTATTG+AGG | + | chr1_4:1975764-1975783 | None:intergenic | 30.0% | |
| ! | GACTGTAAAAGAGTGATTTT+GGG | + | chr1_4:1975812-1975831 | None:intergenic | 30.0% |
| ! | TGACTGTAAAAGAGTGATTT+TGG | + | chr1_4:1975813-1975832 | None:intergenic | 30.0% |
| AACTACCTCATTCAAAATTG+TGG | - | chr1_4:1975832-1975851 | Msa0143060:intron | 30.0% | |
| ACTACCTCATTCAAAATTGT+GGG | - | chr1_4:1975833-1975852 | Msa0143060:intron | 30.0% | |
| ! | AAAACCCACAATTTTGAATG+AGG | + | chr1_4:1975840-1975859 | None:intergenic | 30.0% |
| GAAACCATAGGATTTGAATA+AGG | + | chr1_4:1975935-1975954 | None:intergenic | 30.0% | |
| GAAATTGAATTTAGGGAGAA+TGG | + | chr1_4:1976024-1976043 | None:intergenic | 30.0% | |
| ! | GAGATGGGAATTTAGAATAA+AGG | + | chr1_4:1976217-1976236 | None:intergenic | 30.0% |
| ATTCAATTCCTGCTTCAAAA+TGG | - | chr1_4:1976242-1976261 | Msa0143060:intron | 30.0% | |
| TTCAATTCCTGCTTCAAAAT+GGG | - | chr1_4:1976243-1976262 | Msa0143060:intron | 30.0% | |
| ATTAATCTTCCTTTCCCATA+CGG | + | chr1_4:1976432-1976451 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTGTCAATCACAT+GGG | - | chr1_4:1976554-1976573 | Msa0143060:intron | 30.0% |
| ! | AAACTCAGCATAAGAAGTAT+TGG | + | chr1_4:1976607-1976626 | None:intergenic | 30.0% |
| AATACTTCTTATGCTGAGTT+TGG | - | chr1_4:1976606-1976625 | Msa0143060:intron | 30.0% | |
| TTATGCTGAGTTTGGAAAAA+AGG | - | chr1_4:1976614-1976633 | Msa0143060:intron | 30.0% | |
| TATGCTGAGTTTGGAAAAAA+GGG | - | chr1_4:1976615-1976634 | Msa0143060:intron | 30.0% | |
| TCAATCCAAAGGTTTGATTA+AGG | - | chr1_4:1976669-1976688 | Msa0143060:intron | 30.0% | |
| GCTGAAAGCTTAAGATCTAA+AGG | + | chr1_4:1972296-1972315 | None:intergenic | 35.0% | |
| GCAAACAACTCTACTTAGTT+GGG | + | chr1_4:1972640-1972659 | None:intergenic | 35.0% | |
| TGCAAACAACTCTACTTAGT+TGG | + | chr1_4:1972641-1972660 | None:intergenic | 35.0% | |
| ! | AAACTAGGTTGTTCTTTTGG+AGG | + | chr1_4:1972664-1972683 | None:intergenic | 35.0% |
| ! | CCTAAACTAGGTTGTTCTTT+TGG | + | chr1_4:1972667-1972686 | None:intergenic | 35.0% |
| CCAAAAGAACAACCTAGTTT+AGG | - | chr1_4:1972664-1972683 | Msa0143060:CDS | 35.0% | |
| ! | TCTTATGGACTATCATACTC+AGG | - | chr1_4:1972862-1972881 | Msa0143060:CDS | 35.0% |
| ! | CTTATGGACTATCATACTCA+GGG | - | chr1_4:1972863-1972882 | Msa0143060:CDS | 35.0% |
| ! | TTATGGACTATCATACTCAG+GGG | - | chr1_4:1972864-1972883 | Msa0143060:CDS | 35.0% |
| AAGTCTATTGCTTATGTGCT+TGG | - | chr1_4:1973097-1973116 | Msa0143060:intron | 35.0% | |
| ! | TCTTGGATTGGAAGTATAAG+AGG | - | chr1_4:1973173-1973192 | Msa0143060:intron | 35.0% |
| GAATTGGATAAGGAGTAGTT+CGG | + | chr1_4:1973200-1973219 | None:intergenic | 35.0% | |
| CTACATACCATTGTTGATGT+TGG | + | chr1_4:1973409-1973428 | None:intergenic | 35.0% | |
| CAACATCAACAATGGTATGT+AGG | - | chr1_4:1973407-1973426 | Msa0143060:intron | 35.0% | |
| ACATCAACAATGGTATGTAG+GGG | - | chr1_4:1973409-1973428 | Msa0143060:intron | 35.0% | |
| AACCATTTCAACACTTGGTT+CGG | + | chr1_4:1973467-1973486 | None:intergenic | 35.0% | |
| !! | AACCAAGTGTTGAAATGGTT+CGG | - | chr1_4:1973467-1973486 | Msa0143060:intron | 35.0% |
| ! | TAAACCGAACCGTTTAAAGT+TGG | - | chr1_4:1973496-1973515 | Msa0143060:intron | 35.0% |
| ACTTCCAACTTTAAACGGTT+CGG | + | chr1_4:1973503-1973522 | None:intergenic | 35.0% | |
| CGGATACTTCCAACTTTAAA+CGG | + | chr1_4:1973508-1973527 | None:intergenic | 35.0% | |
| ACCATAACTTAGGTTCAGTT+CGG | + | chr1_4:1973528-1973547 | None:intergenic | 35.0% | |
| ACTGAACCTAAGTTATGGTT+CGG | - | chr1_4:1973529-1973548 | Msa0143060:intron | 35.0% | |
| ! | TTTTGAATGAGAGGGGTTTA+GGG | + | chr1_4:1975741-1975760 | None:intergenic | 35.0% |
| !!! | ATTGAGGTTTTGAATGAGAG+GGG | + | chr1_4:1975748-1975767 | None:intergenic | 35.0% |
| ! | ATCGCCTTATTCAAATCCTA+TGG | - | chr1_4:1975928-1975947 | Msa0143060:intron | 35.0% |
| TTGGGAATTAGAGAAACCAT+AGG | + | chr1_4:1975947-1975966 | None:intergenic | 35.0% | |
| !!! | TTTAGGGAGAATGGTTTTGT+TGG | + | chr1_4:1976015-1976034 | None:intergenic | 35.0% |
| AGACAACATAAGAGGATTTC+TGG | + | chr1_4:1976093-1976112 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGACAACATAAG+AGG | + | chr1_4:1976101-1976120 | None:intergenic | 35.0% |
| TCTTATGTTGTCTCAAAGCT+TGG | - | chr1_4:1976100-1976119 | Msa0143060:intron | 35.0% | |
| TCAATTCCTGCTTCAAAATG+GGG | - | chr1_4:1976244-1976263 | Msa0143060:intron | 35.0% | |
| ! | AGTATTTGAGAAGGCAGTTT+TGG | - | chr1_4:1976331-1976350 | Msa0143060:intron | 35.0% |
| ! | AGATTAGTCCAAAATCCGTA+TGG | - | chr1_4:1976414-1976433 | Msa0143060:intron | 35.0% |
| ! | GATTAGTCCAAAATCCGTAT+GGG | - | chr1_4:1976415-1976434 | Msa0143060:intron | 35.0% |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | - | chr1_4:1976492-1976511 | Msa0143060:intron | 35.0% |
| !!! | GCAGTTTTTTGTCAATCACA+TGG | - | chr1_4:1976553-1976572 | Msa0143060:intron | 35.0% |
| ! | TTTTTGTCAATCACATGGGT+TGG | - | chr1_4:1976558-1976577 | Msa0143060:intron | 35.0% |
| ! | TTTTGTCAATCACATGGGTT+GGG | - | chr1_4:1976559-1976578 | Msa0143060:intron | 35.0% |
| TGGAAAAAAGGGTTATTCCT+AGG | - | chr1_4:1976626-1976645 | Msa0143060:intron | 35.0% | |
| GGAAAAAAGGGTTATTCCTA+GGG | - | chr1_4:1976627-1976646 | Msa0143060:intron | 35.0% | |
| AGCATCCTTAATCAAACCTT+TGG | + | chr1_4:1976677-1976696 | None:intergenic | 35.0% | |
| GAGATATGTGAATTGCTATG+AGG | - | chr1_4:1976741-1976760 | Msa0143060:CDS | 35.0% | |
| ACCAATACCATCTTTCCACT+CGG | - | chr1_4:1972265-1972284 | Msa0143060:CDS | 40.0% | |
| AATGGCTCAGTTATCAGAGA+CGG | + | chr1_4:1972361-1972380 | None:intergenic | 40.0% | |
| !! | AGCTCCCCTAAGTTTTATCT+AGG | + | chr1_4:1972831-1972850 | None:intergenic | 40.0% |
| CAGGAAAGACTCTTAAGACT+TGG | + | chr1_4:1972947-1972966 | None:intergenic | 40.0% | |
| TGCTTATGTGCTTGGACATT+TGG | - | chr1_4:1973105-1973124 | Msa0143060:intron | 40.0% | |
| AGAGCAACCAACATCAACAA+TGG | - | chr1_4:1973399-1973418 | Msa0143060:intron | 40.0% | |
| !! | TTTCAACACTTGGTTCGGTT+CGG | + | chr1_4:1973462-1973481 | None:intergenic | 40.0% |
| !! | AACCGAACCAAGTGTTGAAA+TGG | - | chr1_4:1973462-1973481 | Msa0143060:intron | 40.0% |
| TTCCGAACCATTTCAACACT+TGG | + | chr1_4:1973472-1973491 | None:intergenic | 40.0% | |
| TCCGAACTGAACCTAAGTTA+TGG | - | chr1_4:1973524-1973543 | Msa0143060:intron | 40.0% | |
| GGTTAACCGAACCATAACTT+AGG | + | chr1_4:1973538-1973557 | None:intergenic | 40.0% | |
| GTTCGGATCGTTTGGTTAAT+AGG | + | chr1_4:1973568-1973587 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGGTTCGGATCGTT+TGG | + | chr1_4:1973576-1973595 | None:intergenic | 40.0% |
| !!! | TTATTTTTGCCCACCCCTAA+TGG | - | chr1_4:1975611-1975630 | Msa0143060:intron | 40.0% |
| !! | GTTTTGAATGAGAGGGGTTT+AGG | + | chr1_4:1975742-1975761 | None:intergenic | 40.0% |
| GAGAGTTTAGAAGCAGTTTC+TGG | + | chr1_4:1975865-1975884 | None:intergenic | 40.0% | |
| AATAAGGCGATGACTGAATC+AGG | + | chr1_4:1975919-1975938 | None:intergenic | 40.0% | |
| ATCTCTCATCAAAACTCGCA+CGG | - | chr1_4:1975972-1975991 | Msa0143060:intron | 40.0% | |
| ! | TTGAAGCACCCTTAGAAAGA+AGG | + | chr1_4:1976046-1976065 | None:intergenic | 40.0% |
| ACAAGAGCAATGTTTGAGAG+CGG | + | chr1_4:1976192-1976211 | None:intergenic | 40.0% | |
| GAAACCTGCAGTATTTGAGA+AGG | - | chr1_4:1976322-1976341 | Msa0143060:intron | 40.0% | |
| TCTTAGCATGTAGTGCGATA+AGG | + | chr1_4:1976397-1976416 | None:intergenic | 40.0% | |
| ! | TTCCTTTCCCATACGGATTT+TGG | + | chr1_4:1976425-1976444 | None:intergenic | 40.0% |
| ATGCGTATAAGAAATGGGGT+TGG | - | chr1_4:1976450-1976469 | Msa0143060:intron | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | - | chr1_4:1976502-1976521 | Msa0143060:intron | 40.0% |
| AATTTCAACGCAAAAGCCCT+AGG | + | chr1_4:1976646-1976665 | None:intergenic | 40.0% | |
| ! | AGAGACTTTGAAAGGTGTAG+GGG | + | chr1_4:1976704-1976723 | None:intergenic | 40.0% |
| ! | CAGAGACTTTGAAAGGTGTA+GGG | + | chr1_4:1976705-1976724 | None:intergenic | 40.0% |
| ! | TCAGAGACTTTGAAAGGTGT+AGG | + | chr1_4:1976706-1976725 | None:intergenic | 40.0% |
| TACACCTTTCAAAGTCTCTG+AGG | - | chr1_4:1976705-1976724 | Msa0143060:CDS | 40.0% | |
| AGATCCTCAGAGACTTTGAA+AGG | + | chr1_4:1976712-1976731 | None:intergenic | 40.0% | |
| AAACTCAATAATCGGGACGG+AGG | - | chr1_4:1972563-1972582 | Msa0143060:CDS | 45.0% | |
| AACTCAATAATCGGGACGGA+GGG | - | chr1_4:1972564-1972583 | Msa0143060:CDS | 45.0% | |
| TATCGAACTTGCAACGACGA+TGG | - | chr1_4:1973360-1973379 | Msa0143060:intron | 45.0% | |
| TCAACAATGGTATGTAGGGG+TGG | - | chr1_4:1973412-1973431 | Msa0143060:intron | 45.0% | |
| CAACAATGGTATGTAGGGGT+GGG | - | chr1_4:1973413-1973432 | Msa0143060:intron | 45.0% | |
| !! | TTGGTTCGGTTCGGTTAACA+TGG | + | chr1_4:1973453-1973472 | None:intergenic | 45.0% |
| GGATTCATACCATTAGGGGT+GGG | + | chr1_4:1975623-1975642 | None:intergenic | 45.0% | |
| TGGATTCATACCATTAGGGG+TGG | + | chr1_4:1975624-1975643 | None:intergenic | 45.0% | |
| ACTGCCTTCTCAAATACTGC+AGG | + | chr1_4:1976329-1976348 | None:intergenic | 45.0% | |
| GTCCAAAATCCGTATGGGAA+AGG | - | chr1_4:1976420-1976439 | Msa0143060:intron | 45.0% | |
| ACAGATGCCAACATACACCA+TGG | + | chr1_4:1976512-1976531 | None:intergenic | 45.0% | |
| ATGGTGTATGTTGGCATCTG+TGG | - | chr1_4:1976511-1976530 | Msa0143060:intron | 45.0% | |
| GCCGAGTGGAAAGATGGTAT+TGG | + | chr1_4:1972269-1972288 | None:intergenic | 50.0% | |
| GCTCAGTTATCAGAGACGGA+GGG | + | chr1_4:1972357-1972376 | None:intergenic | 50.0% | |
| CGCAGGCATGAGACTTCTAA+AGG | + | chr1_4:1973034-1973053 | None:intergenic | 50.0% | |
| ! | AGGGGTTTAGGGCAGAGTAA+TGG | + | chr1_4:1975730-1975749 | None:intergenic | 50.0% |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | + | chr1_4:1976253-1976272 | None:intergenic | 50.0% |
| ! | GATCTAAAGGCGTAGCCGAG+TGG | + | chr1_4:1972283-1972302 | None:intergenic | 55.0% |
| GGCTCAGTTATCAGAGACGG+AGG | + | chr1_4:1972358-1972377 | None:intergenic | 55.0% | |
| TTGCAACGACGATGGCGCAA+TGG | - | chr1_4:1973368-1973387 | Msa0143060:intron | 55.0% | |
| GACGATGGCGCAATGGTGAT+AGG | - | chr1_4:1973375-1973394 | Msa0143060:intron | 55.0% | |
| ATGGTATGTAGGGGTGGGCA+TGG | - | chr1_4:1973418-1973437 | Msa0143060:intron | 55.0% | |
| ATGTAGGGGTGGGCATGGTT+CGG | - | chr1_4:1973423-1973442 | Msa0143060:intron | 55.0% | |
| GGCGTAGCCGAGTGGAAAGA+TGG | + | chr1_4:1972275-1972294 | None:intergenic | 60.0% | |
| ATGCCTGCGTGCTTGAGCAG+TGG | - | chr1_4:1973045-1973064 | Msa0143060:intron | 60.0% | |
| CTTCCACTGCTCAAGCACGC+AGG | + | chr1_4:1973051-1973070 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 1972221 | 1976825 | 1972221 | ID=Msa0143060;Name=Msa0143060 |
| chr1_4 | mRNA | 1972221 | 1976825 | 1972221 | ID=Msa0143060-mRNA-1;Parent=Msa0143060;Name=Msa0143060-mRNA-1;_AED=0.42;_eAED=0.71;_QI=0|0|0|0.66|1|1|3|0|270 |
| chr1_4 | exon | 1976703 | 1976825 | 1976703 | ID=Msa0143060-mRNA-1:exon:739;Parent=Msa0143060-mRNA-1 |
| chr1_4 | exon | 1972491 | 1972990 | 1972491 | ID=Msa0143060-mRNA-1:exon:738;Parent=Msa0143060-mRNA-1 |
| chr1_4 | exon | 1972221 | 1972410 | 1972221 | ID=Msa0143060-mRNA-1:exon:737;Parent=Msa0143060-mRNA-1 |
| chr1_4 | CDS | 1976703 | 1976825 | 1976703 | ID=Msa0143060-mRNA-1:cds;Parent=Msa0143060-mRNA-1 |
| chr1_4 | CDS | 1972491 | 1972990 | 1972491 | ID=Msa0143060-mRNA-1:cds;Parent=Msa0143060-mRNA-1 |
| chr1_4 | CDS | 1972221 | 1972410 | 1972221 | ID=Msa0143060-mRNA-1:cds;Parent=Msa0143060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
