Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144060 | KEH40807.1 | 82.111 | 341 | 29 | 4 | 1 | 311 | 1 | 339 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144060 | sp|Q9XIB4|Y1475_ARATH | 29.932 | 147 | 88 | 6 | 9 | 152 | 34 | 168 | 6.42e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144060 | A0A072VG97 | 82.111 | 341 | 29 | 4 | 1 | 311 | 1 | 339 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0144060 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144060 | MtrunA17_Chr1g0163231 | 90.845 | 284 | 24 | 2 | 1 | 284 | 1 | 282 | 0.0 | 531 |
| Msa0144060 | MtrunA17_Chr1g0171611 | 87.368 | 285 | 20 | 2 | 1 | 284 | 1 | 270 | 1.67e-176 | 489 |
| Msa0144060 | MtrunA17_Chr1g0163261 | 57.333 | 300 | 100 | 9 | 1 | 285 | 1 | 287 | 1.84e-104 | 307 |
| Msa0144060 | MtrunA17_Chr1g0163251 | 51.890 | 291 | 121 | 7 | 1 | 282 | 1 | 281 | 7.73e-95 | 286 |
| Msa0144060 | MtrunA17_Chr1g0163201 | 47.134 | 314 | 131 | 9 | 24 | 311 | 18 | 322 | 1.29e-83 | 258 |
| Msa0144060 | MtrunA17_Chr1g0163181 | 46.557 | 305 | 131 | 8 | 1 | 283 | 1 | 295 | 5.28e-83 | 257 |
| Msa0144060 | MtrunA17_Chr1g0163241 | 60.150 | 133 | 41 | 4 | 24 | 149 | 22 | 149 | 8.38e-47 | 155 |
| Msa0144060 | MtrunA17_Chr1g0163191 | 55.285 | 123 | 51 | 1 | 1 | 123 | 1 | 119 | 1.21e-41 | 142 |
| Msa0144060 | MtrunA17_Chr3g0131891 | 31.615 | 291 | 177 | 9 | 6 | 279 | 16 | 301 | 1.54e-33 | 125 |
| Msa0144060 | MtrunA17_Chr7g0233561 | 31.313 | 297 | 180 | 8 | 6 | 279 | 15 | 310 | 2.54e-33 | 125 |
| Msa0144060 | MtrunA17_Chr1g0163091 | 50.394 | 127 | 56 | 4 | 162 | 285 | 1 | 123 | 8.36e-30 | 111 |
| Msa0144060 | MtrunA17_Chr1g0162161 | 43.151 | 146 | 63 | 5 | 25 | 156 | 4 | 143 | 9.91e-30 | 111 |
| Msa0144060 | MtrunA17_Chr1g0162151 | 53.125 | 128 | 51 | 5 | 162 | 285 | 1 | 123 | 3.82e-28 | 108 |
| Msa0144060 | MtrunA17_Chr1g0163111 | 44.295 | 149 | 69 | 6 | 162 | 305 | 1 | 140 | 5.36e-28 | 108 |
| Msa0144060 | MtrunA17_Chr1g0163131 | 27.483 | 302 | 184 | 8 | 5 | 280 | 14 | 306 | 7.71e-28 | 110 |
| Msa0144060 | MtrunA17_Chr1g0163101 | 36.095 | 169 | 93 | 4 | 2 | 156 | 3 | 170 | 9.12e-28 | 106 |
| Msa0144060 | MtrunA17_Chr1g0163151 | 46.721 | 122 | 59 | 4 | 162 | 283 | 1 | 116 | 2.41e-26 | 103 |
| Msa0144060 | MtrunA17_Chr7g0233521 | 29.242 | 277 | 157 | 9 | 25 | 279 | 2 | 261 | 2.10e-25 | 102 |
| Msa0144060 | MtrunA17_Chr8g0390841 | 25.857 | 321 | 172 | 8 | 2 | 279 | 32 | 329 | 2.97e-25 | 105 |
| Msa0144060 | MtrunA17_Chr7g0233531 | 30.072 | 276 | 156 | 9 | 25 | 279 | 2 | 261 | 5.49e-25 | 101 |
| Msa0144060 | MtrunA17_Chr6g0476171 | 43.182 | 132 | 65 | 2 | 159 | 282 | 7 | 136 | 7.52e-25 | 100 |
| Msa0144060 | MtrunA17_Chr1g0163121 | 39.416 | 137 | 80 | 2 | 20 | 156 | 6 | 139 | 1.06e-24 | 97.4 |
| Msa0144060 | MtrunA17_Chr1g0163141 | 36.923 | 130 | 73 | 2 | 23 | 144 | 9 | 137 | 1.80e-23 | 95.5 |
| Msa0144060 | MtrunA17_Chr1g0163081 | 40.876 | 137 | 74 | 3 | 25 | 156 | 6 | 140 | 4.47e-23 | 93.2 |
| Msa0144060 | MtrunA17_Chr7g0233541 | 27.000 | 300 | 192 | 8 | 25 | 301 | 2 | 297 | 1.03e-22 | 95.9 |
| Msa0144060 | MtrunA17_Chr6g0476181 | 39.865 | 148 | 76 | 5 | 25 | 167 | 2 | 141 | 1.38e-22 | 92.4 |
| Msa0144060 | MtrunA17_Chr5g0419201 | 33.333 | 156 | 92 | 2 | 3 | 146 | 10 | 165 | 8.39e-22 | 90.9 |
| Msa0144060 | MtrunA17_Chr1g0163221 | 26.621 | 293 | 193 | 7 | 9 | 286 | 11 | 296 | 1.46e-21 | 93.6 |
| Msa0144060 | MtrunA17_Chr1g0208771 | 25.850 | 294 | 163 | 9 | 24 | 279 | 12 | 288 | 3.80e-21 | 93.6 |
| Msa0144060 | MtrunA17_Chr4g0067431 | 25.240 | 313 | 191 | 10 | 9 | 287 | 15 | 318 | 5.11e-21 | 91.7 |
| Msa0144060 | MtrunA17_Chr7g0233571 | 42.157 | 102 | 57 | 1 | 6 | 105 | 7 | 108 | 7.39e-21 | 89.4 |
| Msa0144060 | MtrunA17_Chr3g0103181 | 24.476 | 286 | 188 | 9 | 6 | 279 | 9 | 278 | 1.04e-20 | 90.1 |
| Msa0144060 | MtrunA17_Chr1g0163071 | 24.013 | 304 | 174 | 10 | 25 | 285 | 2 | 291 | 1.84e-20 | 89.7 |
| Msa0144060 | MtrunA17_Chr6g0467351 | 39.831 | 118 | 64 | 3 | 9 | 123 | 15 | 128 | 1.12e-18 | 83.6 |
| Msa0144060 | MtrunA17_Chr3g0103191 | 27.570 | 214 | 129 | 6 | 6 | 203 | 9 | 212 | 3.03e-18 | 82.8 |
| Msa0144060 | MtrunA17_Chr3g0103171 | 24.444 | 270 | 180 | 9 | 24 | 279 | 5 | 264 | 6.02e-18 | 82.0 |
| Msa0144060 | MtrunA17_Chr3g0103151 | 31.944 | 144 | 88 | 3 | 6 | 147 | 9 | 144 | 1.17e-17 | 79.0 |
| Msa0144060 | MtrunA17_Chr1g0163161 | 39.175 | 97 | 56 | 2 | 37 | 133 | 1 | 94 | 7.66e-16 | 73.2 |
| Msa0144060 | MtrunA17_Chr1g0163061 | 36.634 | 101 | 61 | 2 | 8 | 105 | 14 | 114 | 5.98e-14 | 70.9 |
| Msa0144060 | MtrunA17_Chr3g0077451 | 24.254 | 268 | 162 | 9 | 23 | 287 | 10 | 239 | 8.04e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144060 | AT1G49475.1 | 29.932 | 147 | 88 | 6 | 9 | 152 | 34 | 168 | 6.52e-12 | 63.9 |
| Msa0144060 | AT3G18990.1 | 22.849 | 337 | 184 | 10 | 9 | 278 | 6 | 333 | 5.57e-11 | 63.2 |
| Msa0144060 | AT3G18990.2 | 22.619 | 336 | 186 | 9 | 9 | 278 | 6 | 333 | 6.47e-11 | 63.2 |
Find 51 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1_4:+3505071 | None:intergenic |
| GTGCTCAAAAGGAAATATTT+TGG | 0.171981 | 1_4:-3505819 | Msa0144060:CDS |
| AAAATCTTAACCTTAAAATA+TGG | 0.178478 | 1_4:+3505697 | None:intergenic |
| ATATTTGGTTTAAGAGAAAT+TGG | 0.235240 | 1_4:-3505780 | Msa0144060:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1_4:-3505882 | Msa0144060:CDS |
| TTTGGAAGTCTAAGAATTAC+TGG | 0.251892 | 1_4:+3505844 | None:intergenic |
| GCTTTAGTATTCAAATATTT+AGG | 0.260785 | 1_4:-3505724 | Msa0144060:CDS |
| TATTTGAATGAGAACCTTAA+AGG | 0.282945 | 1_4:-3505085 | Msa0144060:CDS |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1_4:+3505850 | None:intergenic |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1_4:+3505885 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.329140 | 1_4:+3506140 | None:intergenic |
| TGGAGCGTGAAGGTGATATT+TGG | 0.370024 | 1_4:-3505795 | Msa0144060:CDS |
| AACATCACCTTCACTTTCAT+AGG | 0.384516 | 1_4:+3505028 | None:intergenic |
| TCGAAATCATGAACTACATA+AGG | 0.397577 | 1_4:-3506117 | Msa0144060:CDS |
| TTTGGCTTGGGTAATAGTTA+TGG | 0.402099 | 1_4:+3504877 | None:intergenic |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1_4:+3505886 | None:intergenic |
| AGCTCAAGCAAGAGACTTAG+AGG | 0.407272 | 1_4:+3504097 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1_4:-3505061 | Msa0144060:CDS |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.419454 | 1_4:-3505751 | Msa0144060:CDS |
| CATTGTGTTTCAGCAGACTT+AGG | 0.419879 | 1_4:-3504282 | Msa0144060:intron |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1_4:+3505325 | None:intergenic |
| ATTTGAATGAGAACCTTAAA+GGG | 0.440321 | 1_4:-3505084 | Msa0144060:CDS |
| ACTTCCAAATGGTGCTCAAA+AGG | 0.444677 | 1_4:-3505830 | Msa0144060:CDS |
| AAATCTTAACCTTAAAATAT+GGG | 0.446492 | 1_4:+3505698 | None:intergenic |
| GGCAAATGGCTTCCAACCAC+TGG | 0.462531 | 1_4:+3504970 | None:intergenic |
| TATTTGGTTTAAGAGAAATT+GGG | 0.488183 | 1_4:-3505779 | Msa0144060:CDS |
| TTACGCCCATGGCTATACTT+TGG | 0.489114 | 1_4:-3505296 | Msa0144060:intron |
| GAGGGTTCCCAAGAAATTTG+TGG | 0.503049 | 1_4:-3505893 | Msa0144060:CDS |
| CGAAATCATGAACTACATAA+GGG | 0.505471 | 1_4:-3506116 | Msa0144060:CDS |
| GAGAGGAGGTATGATTAAGA+AGG | 0.513052 | 1_4:-3505392 | Msa0144060:CDS |
| TTCATTGATGAAAGTTGTGA+AGG | 0.513828 | 1_4:-3505634 | Msa0144060:CDS |
| TACTTTGCAGGTAGTAAGAG+AGG | 0.516159 | 1_4:-3505409 | Msa0144060:intron |
| GACTTACCAAAGTATAGCCA+TGG | 0.533080 | 1_4:+3505290 | None:intergenic |
| ACACGAATCTCCATTGTGAT+CGG | 0.544622 | 1_4:+3504243 | None:intergenic |
| GTAATTCTTAGACTTCCAAA+TGG | 0.548786 | 1_4:-3505841 | Msa0144060:CDS |
| GACAATGATACTAATAGTGC+TGG | 0.555900 | 1_4:-3505574 | Msa0144060:CDS |
| ATAGTTATGGTGAATGAAAG+TGG | 0.568370 | 1_4:+3504890 | None:intergenic |
| TCGTGTGAATTCTACTTACC+CGG | 0.582737 | 1_4:-3504226 | Msa0144060:intron |
| TTAGTATTCAAATATTTAGG+TGG | 0.586781 | 1_4:-3505721 | Msa0144060:CDS |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1_4:+3505106 | None:intergenic |
| ATAGTGCTGGCACATCTCAA+AGG | 0.602521 | 1_4:-3505561 | Msa0144060:CDS |
| CTTGCATTGTGACCAGTGGT+TGG | 0.607128 | 1_4:-3504982 | Msa0144060:CDS |
| TTGTCACAATCTTACGCCCA+TGG | 0.612713 | 1_4:-3505307 | Msa0144060:CDS |
| TGTGTTTCAGCAGACTTAGG+TGG | 0.616192 | 1_4:-3504279 | Msa0144060:intron |
| ATAACTATTACCCAAGCCAA+AGG | 0.622711 | 1_4:-3504875 | Msa0144060:intron |
| TTTGCAGGTAGTAAGAGAGG+AGG | 0.644007 | 1_4:-3505406 | Msa0144060:intron |
| TGTGATGAAACCGATCACAA+TGG | 0.655929 | 1_4:-3504253 | Msa0144060:CDS |
| GCTCAAGCAAGAGACTTAGA+GGG | 0.658663 | 1_4:+3504098 | None:intergenic |
| ACTTACCAAAGTATAGCCAT+GGG | 0.659069 | 1_4:+3505291 | None:intergenic |
| AGAACTTGCATTGTGACCAG+TGG | 0.689771 | 1_4:-3504986 | Msa0144060:CDS |
| GAACATGCCTATGAAAGTGA+AGG | 0.707159 | 1_4:-3505035 | Msa0144060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTAGATTTTTTAAAT+AGG | - | chr1_4:3505580-3505599 | Msa0144060:CDS | 10.0% |
| !! | ATAAATTATTTAAAAGTTCA+AGG | - | chr1_4:3505777-3505796 | Msa0144060:CDS | 10.0% |
| !!! | AGTTTTTAGATTTTTTAAAT+AGG | - | chr1_4:3505580-3505599 | Msa0144060:CDS | 10.0% |
| !! | ATAAATTATTTAAAAGTTCA+AGG | - | chr1_4:3505777-3505796 | Msa0144060:CDS | 10.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | + | chr1_4:3504264-3504283 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | + | chr1_4:3504334-3504353 | None:intergenic | 15.0% |
| !! | AAATCTTAACCTTAAAATAT+GGG | + | chr1_4:3504560-3504579 | None:intergenic | 15.0% |
| !! | AAAATCTTAACCTTAAAATA+TGG | + | chr1_4:3504561-3504580 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATTTT+TGG | - | chr1_4:3504561-3504580 | Msa0144060:intron | 15.0% |
| !!! | TTCATCAATGAATTTTATAT+TGG | + | chr1_4:3504613-3504632 | None:intergenic | 15.0% |
| !!! | TTGTTATTTTACCTTATATA+TGG | - | chr1_4:3504797-3504816 | Msa0144060:intron | 15.0% |
| !!! | GTTCAAATATTATTTTTTGA+AGG | - | chr1_4:3505011-3505030 | Msa0144060:CDS | 15.0% |
| !!! | GTTCTAAATTATTAGTTATT+TGG | - | chr1_4:3505041-3505060 | Msa0144060:CDS | 15.0% |
| !!! | TATAAGTTACTAGTAAATTT+TGG | - | chr1_4:3505081-3505100 | Msa0144060:CDS | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | + | chr1_4:3505309-3505328 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | - | chr1_4:3505308-3505327 | Msa0144060:CDS | 15.0% |
| !! | TTTCTTTAAATAAAGTAAGA+AGG | + | chr1_4:3505411-3505430 | None:intergenic | 15.0% |
| !! | CAATTGATATTAAACAAATT+TGG | + | chr1_4:3505460-3505479 | None:intergenic | 15.0% |
| !!! | GAACTAGTTTTTTTTTTAAT+TGG | + | chr1_4:3505804-3505823 | None:intergenic | 15.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | + | chr1_4:3504264-3504283 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | + | chr1_4:3504334-3504353 | None:intergenic | 15.0% |
| !! | AAATCTTAACCTTAAAATAT+GGG | + | chr1_4:3504560-3504579 | None:intergenic | 15.0% |
| !! | AAAATCTTAACCTTAAAATA+TGG | + | chr1_4:3504561-3504580 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATTTT+TGG | - | chr1_4:3504561-3504580 | Msa0144060:intron | 15.0% |
| !!! | TTCATCAATGAATTTTATAT+TGG | + | chr1_4:3504613-3504632 | None:intergenic | 15.0% |
| !!! | TTGTTATTTTACCTTATATA+TGG | - | chr1_4:3504797-3504816 | Msa0144060:intron | 15.0% |
| !!! | GTTCAAATATTATTTTTTGA+AGG | - | chr1_4:3505011-3505030 | Msa0144060:CDS | 15.0% |
| !!! | GTTCTAAATTATTAGTTATT+TGG | - | chr1_4:3505041-3505060 | Msa0144060:CDS | 15.0% |
| !!! | TATAAGTTACTAGTAAATTT+TGG | - | chr1_4:3505081-3505100 | Msa0144060:CDS | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | + | chr1_4:3505309-3505328 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | - | chr1_4:3505308-3505327 | Msa0144060:CDS | 15.0% |
| !! | TTTCTTTAAATAAAGTAAGA+AGG | + | chr1_4:3505411-3505430 | None:intergenic | 15.0% |
| !! | CAATTGATATTAAACAAATT+TGG | + | chr1_4:3505460-3505479 | None:intergenic | 15.0% |
| !!! | GAACTAGTTTTTTTTTTAAT+TGG | + | chr1_4:3505804-3505823 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | - | chr1_4:3504475-3504494 | Msa0144060:intron | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | - | chr1_4:3504476-3504495 | Msa0144060:intron | 20.0% |
| !! | GCTTTAGTATTCAAATATTT+AGG | - | chr1_4:3504531-3504550 | Msa0144060:intron | 20.0% |
| !! | TTAGTATTCAAATATTTAGG+TGG | - | chr1_4:3504534-3504553 | Msa0144060:intron | 20.0% |
| !!! | ATCTATTTTAGCCATATATA+AGG | + | chr1_4:3504811-3504830 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTTTTTACTTTGC+AGG | - | chr1_4:3504834-3504853 | Msa0144060:intron | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | + | chr1_4:3505302-3505321 | None:intergenic | 20.0% |
| !! | TTTAACATAATTAATCCTAC+CGG | + | chr1_4:3506051-3506070 | None:intergenic | 20.0% |
| !! | AGGATTAATTATGTTAAATG+TGG | - | chr1_4:3506053-3506072 | Msa0144060:intron | 20.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | - | chr1_4:3504475-3504494 | Msa0144060:intron | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | - | chr1_4:3504476-3504495 | Msa0144060:intron | 20.0% |
| !! | GCTTTAGTATTCAAATATTT+AGG | - | chr1_4:3504531-3504550 | Msa0144060:intron | 20.0% |
| !! | TTAGTATTCAAATATTTAGG+TGG | - | chr1_4:3504534-3504553 | Msa0144060:intron | 20.0% |
| !!! | ATCTATTTTAGCCATATATA+AGG | + | chr1_4:3504811-3504830 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTTTTTACTTTGC+AGG | - | chr1_4:3504834-3504853 | Msa0144060:intron | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | + | chr1_4:3505302-3505321 | None:intergenic | 20.0% |
| !! | TTTAACATAATTAATCCTAC+CGG | + | chr1_4:3506051-3506070 | None:intergenic | 20.0% |
| !! | AGGATTAATTATGTTAAATG+TGG | - | chr1_4:3506053-3506072 | Msa0144060:intron | 20.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | + | chr1_4:3504242-3504261 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | + | chr1_4:3504372-3504391 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | + | chr1_4:3504373-3504392 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | - | chr1_4:3504373-3504392 | Msa0144060:intron | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | - | chr1_4:3504437-3504456 | Msa0144060:intron | 25.0% |
| ! | AATATTCAGCAAAAAATCAC+AGG | - | chr1_4:3504738-3504757 | Msa0144060:intron | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | - | chr1_4:3505123-3505142 | Msa0144060:intron | 25.0% |
| ! | TATTTGAATGAGAACCTTAA+AGG | - | chr1_4:3505170-3505189 | Msa0144060:intron | 25.0% |
| ! | ATTTGAATGAGAACCTTAAA+GGG | - | chr1_4:3505171-3505190 | Msa0144060:intron | 25.0% |
| !! | TAACTAGGTTTTCTAACATT+AGG | - | chr1_4:3505652-3505671 | Msa0144060:CDS | 25.0% |
| ! | ATTTATAATTTAAGAGGGAG+AGG | + | chr1_4:3505763-3505782 | None:intergenic | 25.0% |
| ! | TTAACATAATTAATCCTACC+GGG | + | chr1_4:3506050-3506069 | None:intergenic | 25.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | + | chr1_4:3504242-3504261 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | + | chr1_4:3504372-3504391 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | + | chr1_4:3504373-3504392 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | - | chr1_4:3504373-3504392 | Msa0144060:intron | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | - | chr1_4:3504437-3504456 | Msa0144060:intron | 25.0% |
| ! | AATATTCAGCAAAAAATCAC+AGG | - | chr1_4:3504738-3504757 | Msa0144060:intron | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | - | chr1_4:3505123-3505142 | Msa0144060:intron | 25.0% |
| ! | TATTTGAATGAGAACCTTAA+AGG | - | chr1_4:3505170-3505189 | Msa0144060:intron | 25.0% |
| ! | ATTTGAATGAGAACCTTAAA+GGG | - | chr1_4:3505171-3505190 | Msa0144060:intron | 25.0% |
| !! | TAACTAGGTTTTCTAACATT+AGG | - | chr1_4:3505652-3505671 | Msa0144060:CDS | 25.0% |
| ! | ATTTATAATTTAAGAGGGAG+AGG | + | chr1_4:3505763-3505782 | None:intergenic | 25.0% |
| ! | TTAACATAATTAATCCTACC+GGG | + | chr1_4:3506050-3506069 | None:intergenic | 25.0% |
| TCGAAATCATGAACTACATA+AGG | - | chr1_4:3504138-3504157 | Msa0144060:intron | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | - | chr1_4:3504139-3504158 | Msa0144060:intron | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | + | chr1_4:3504317-3504336 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | + | chr1_4:3504408-3504427 | None:intergenic | 30.0% | |
| TTTGGAAGTCTAAGAATTAC+TGG | + | chr1_4:3504414-3504433 | None:intergenic | 30.0% | |
| GTAATTCTTAGACTTCCAAA+TGG | - | chr1_4:3504414-3504433 | Msa0144060:intron | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | - | chr1_4:3504436-3504455 | Msa0144060:intron | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+TGG | - | chr1_4:3504440-3504459 | Msa0144060:intron | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | - | chr1_4:3504504-3504523 | Msa0144060:intron | 30.0% |
| !!! | GATTTTTGGTCACAATACAT+TGG | - | chr1_4:3504575-3504594 | Msa0144060:intron | 30.0% |
| TTCATTGATGAAAGTTGTGA+AGG | - | chr1_4:3504621-3504640 | Msa0144060:intron | 30.0% | |
| ACATCTCAAAGGAGAAAAAA+CGG | - | chr1_4:3504705-3504724 | Msa0144060:intron | 30.0% | |
| ! | GACAATTCAAGTTCAAAACT+TGG | + | chr1_4:3504933-3504952 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | + | chr1_4:3505130-3505149 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | + | chr1_4:3505368-3505387 | None:intergenic | 30.0% | |
| AAGTAAGAAGGAAAAACCTT+TGG | + | chr1_4:3505399-3505418 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | + | chr1_4:3505490-3505509 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | - | chr1_4:3505489-3505508 | Msa0144060:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | + | chr1_4:3505496-3505515 | None:intergenic | 30.0% | |
| TCGAAATCATGAACTACATA+AGG | - | chr1_4:3504138-3504157 | Msa0144060:intron | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | - | chr1_4:3504139-3504158 | Msa0144060:intron | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | + | chr1_4:3504317-3504336 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | + | chr1_4:3504408-3504427 | None:intergenic | 30.0% | |
| TTTGGAAGTCTAAGAATTAC+TGG | + | chr1_4:3504414-3504433 | None:intergenic | 30.0% | |
| GTAATTCTTAGACTTCCAAA+TGG | - | chr1_4:3504414-3504433 | Msa0144060:intron | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | - | chr1_4:3504436-3504455 | Msa0144060:intron | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+TGG | - | chr1_4:3504440-3504459 | Msa0144060:intron | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | - | chr1_4:3504504-3504523 | Msa0144060:intron | 30.0% |
| !!! | GATTTTTGGTCACAATACAT+TGG | - | chr1_4:3504575-3504594 | Msa0144060:intron | 30.0% |
| TTCATTGATGAAAGTTGTGA+AGG | - | chr1_4:3504621-3504640 | Msa0144060:intron | 30.0% | |
| ACATCTCAAAGGAGAAAAAA+CGG | - | chr1_4:3504705-3504724 | Msa0144060:intron | 30.0% | |
| ! | GACAATTCAAGTTCAAAACT+TGG | + | chr1_4:3504933-3504952 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | + | chr1_4:3505130-3505149 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | + | chr1_4:3505368-3505387 | None:intergenic | 30.0% | |
| AAGTAAGAAGGAAAAACCTT+TGG | + | chr1_4:3505399-3505418 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | + | chr1_4:3505490-3505509 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | - | chr1_4:3505489-3505508 | Msa0144060:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | + | chr1_4:3505496-3505515 | None:intergenic | 30.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | + | chr1_4:3504118-3504137 | None:intergenic | 35.0% | |
| ! | ATTTCCTTTTGAGCACCATT+TGG | + | chr1_4:3504432-3504451 | None:intergenic | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | - | chr1_4:3504548-3504567 | Msa0144060:intron | 35.0% |
| GACAATGATACTAATAGTGC+TGG | - | chr1_4:3504681-3504700 | Msa0144060:intron | 35.0% | |
| ACTTACCAAAGTATAGCCAT+GGG | + | chr1_4:3504967-3504986 | None:intergenic | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | + | chr1_4:3505152-3505171 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | - | chr1_4:3505194-3505213 | Msa0144060:intron | 35.0% | |
| AACATCACCTTCACTTTCAT+AGG | + | chr1_4:3505230-3505249 | None:intergenic | 35.0% | |
| !! | TTTGGCTTGGGTAATAGTTA+TGG | + | chr1_4:3505381-3505400 | None:intergenic | 35.0% |
| ATAACTATTACCCAAGCCAA+AGG | - | chr1_4:3505380-3505399 | Msa0144060:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | - | chr1_4:3505498-3505517 | Msa0144060:intron | 35.0% | |
| AGTACATACTCGAAAGAACA+TGG | + | chr1_4:3505553-3505572 | None:intergenic | 35.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | + | chr1_4:3504118-3504137 | None:intergenic | 35.0% | |
| ! | ATTTCCTTTTGAGCACCATT+TGG | + | chr1_4:3504432-3504451 | None:intergenic | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | - | chr1_4:3504548-3504567 | Msa0144060:intron | 35.0% |
| GACAATGATACTAATAGTGC+TGG | - | chr1_4:3504681-3504700 | Msa0144060:intron | 35.0% | |
| ACTTACCAAAGTATAGCCAT+GGG | + | chr1_4:3504967-3504986 | None:intergenic | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | + | chr1_4:3505152-3505171 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | - | chr1_4:3505194-3505213 | Msa0144060:intron | 35.0% | |
| AACATCACCTTCACTTTCAT+AGG | + | chr1_4:3505230-3505249 | None:intergenic | 35.0% | |
| !! | TTTGGCTTGGGTAATAGTTA+TGG | + | chr1_4:3505381-3505400 | None:intergenic | 35.0% |
| ATAACTATTACCCAAGCCAA+AGG | - | chr1_4:3505380-3505399 | Msa0144060:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | - | chr1_4:3505498-3505517 | Msa0144060:intron | 35.0% | |
| AGTACATACTCGAAAGAACA+TGG | + | chr1_4:3505553-3505572 | None:intergenic | 35.0% | |
| ATGATTATTGTCTGCTGCAG+AGG | - | chr1_4:3504343-3504362 | Msa0144060:intron | 40.0% | |
| TGATTATTGTCTGCTGCAGA+GGG | - | chr1_4:3504344-3504363 | Msa0144060:intron | 40.0% | |
| ACTTCCAAATGGTGCTCAAA+AGG | - | chr1_4:3504425-3504444 | Msa0144060:intron | 40.0% | |
| TACTTTGCAGGTAGTAAGAG+AGG | - | chr1_4:3504846-3504865 | Msa0144060:intron | 40.0% | |
| ! | GAGAGGAGGTATGATTAAGA+AGG | - | chr1_4:3504863-3504882 | Msa0144060:intron | 40.0% |
| GACTTACCAAAGTATAGCCA+TGG | + | chr1_4:3504968-3504987 | None:intergenic | 40.0% | |
| GAACATGCCTATGAAAGTGA+AGG | - | chr1_4:3505220-3505239 | Msa0144060:intron | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | + | chr1_4:3505393-3505412 | None:intergenic | 40.0% |
| AGAAGGAAAAACCTTTGGCT+TGG | + | chr1_4:3505394-3505413 | None:intergenic | 40.0% | |
| ATGACAAGGTTATGAAGGAG+AGG | - | chr1_4:3505503-3505522 | Msa0144060:intron | 40.0% | |
| !! | TTATGAAGGAGAGGCATTGA+AGG | - | chr1_4:3505512-3505531 | Msa0144060:intron | 40.0% |
| CATTGTGTTTCAGCAGACTT+AGG | - | chr1_4:3505973-3505992 | Msa0144060:intron | 40.0% | |
| TGTGATGAAACCGATCACAA+TGG | - | chr1_4:3506002-3506021 | Msa0144060:intron | 40.0% | |
| ACACGAATCTCCATTGTGAT+CGG | + | chr1_4:3506015-3506034 | None:intergenic | 40.0% | |
| TCGTGTGAATTCTACTTACC+CGG | - | chr1_4:3506029-3506048 | Msa0144060:intron | 40.0% | |
| ATGATTATTGTCTGCTGCAG+AGG | - | chr1_4:3504343-3504362 | Msa0144060:intron | 40.0% | |
| TGATTATTGTCTGCTGCAGA+GGG | - | chr1_4:3504344-3504363 | Msa0144060:intron | 40.0% | |
| ACTTCCAAATGGTGCTCAAA+AGG | - | chr1_4:3504425-3504444 | Msa0144060:intron | 40.0% | |
| TACTTTGCAGGTAGTAAGAG+AGG | - | chr1_4:3504846-3504865 | Msa0144060:intron | 40.0% | |
| ! | GAGAGGAGGTATGATTAAGA+AGG | - | chr1_4:3504863-3504882 | Msa0144060:intron | 40.0% |
| GACTTACCAAAGTATAGCCA+TGG | + | chr1_4:3504968-3504987 | None:intergenic | 40.0% | |
| GAACATGCCTATGAAAGTGA+AGG | - | chr1_4:3505220-3505239 | Msa0144060:intron | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | + | chr1_4:3505393-3505412 | None:intergenic | 40.0% |
| AGAAGGAAAAACCTTTGGCT+TGG | + | chr1_4:3505394-3505413 | None:intergenic | 40.0% | |
| ATGACAAGGTTATGAAGGAG+AGG | - | chr1_4:3505503-3505522 | Msa0144060:intron | 40.0% | |
| !! | TTATGAAGGAGAGGCATTGA+AGG | - | chr1_4:3505512-3505531 | Msa0144060:intron | 40.0% |
| CATTGTGTTTCAGCAGACTT+AGG | - | chr1_4:3505973-3505992 | Msa0144060:intron | 40.0% | |
| TGTGATGAAACCGATCACAA+TGG | - | chr1_4:3506002-3506021 | Msa0144060:intron | 40.0% | |
| ACACGAATCTCCATTGTGAT+CGG | + | chr1_4:3506015-3506034 | None:intergenic | 40.0% | |
| TCGTGTGAATTCTACTTACC+CGG | - | chr1_4:3506029-3506048 | Msa0144060:intron | 40.0% | |
| GAGGGTTCCCAAGAAATTTG+TGG | - | chr1_4:3504362-3504381 | Msa0144060:intron | 45.0% | |
| !! | ATATTTTGGGTGGAGCGTGA+AGG | - | chr1_4:3504450-3504469 | Msa0144060:intron | 45.0% |
| TGGAGCGTGAAGGTGATATT+TGG | - | chr1_4:3504460-3504479 | Msa0144060:intron | 45.0% | |
| !! | ATAGTGCTGGCACATCTCAA+AGG | - | chr1_4:3504694-3504713 | Msa0144060:intron | 45.0% |
| TTTGCAGGTAGTAAGAGAGG+AGG | - | chr1_4:3504849-3504868 | Msa0144060:intron | 45.0% | |
| TTGTCACAATCTTACGCCCA+TGG | - | chr1_4:3504948-3504967 | Msa0144060:CDS | 45.0% | |
| TTACGCCCATGGCTATACTT+TGG | - | chr1_4:3504959-3504978 | Msa0144060:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | + | chr1_4:3505187-3505206 | None:intergenic | 45.0% | |
| AGAACTTGCATTGTGACCAG+TGG | - | chr1_4:3505269-3505288 | Msa0144060:intron | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | - | chr1_4:3505522-3505541 | Msa0144060:CDS | 45.0% |
| TGTGTTTCAGCAGACTTAGG+TGG | - | chr1_4:3505976-3505995 | Msa0144060:intron | 45.0% | |
| GTGAATTCTACTTACCCGGT+AGG | - | chr1_4:3506033-3506052 | Msa0144060:intron | 45.0% | |
| GAGGGTTCCCAAGAAATTTG+TGG | - | chr1_4:3504362-3504381 | Msa0144060:intron | 45.0% | |
| !! | ATATTTTGGGTGGAGCGTGA+AGG | - | chr1_4:3504450-3504469 | Msa0144060:intron | 45.0% |
| TGGAGCGTGAAGGTGATATT+TGG | - | chr1_4:3504460-3504479 | Msa0144060:intron | 45.0% | |
| !! | ATAGTGCTGGCACATCTCAA+AGG | - | chr1_4:3504694-3504713 | Msa0144060:intron | 45.0% |
| TTTGCAGGTAGTAAGAGAGG+AGG | - | chr1_4:3504849-3504868 | Msa0144060:intron | 45.0% | |
| TTGTCACAATCTTACGCCCA+TGG | - | chr1_4:3504948-3504967 | Msa0144060:CDS | 45.0% | |
| TTACGCCCATGGCTATACTT+TGG | - | chr1_4:3504959-3504978 | Msa0144060:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | + | chr1_4:3505187-3505206 | None:intergenic | 45.0% | |
| AGAACTTGCATTGTGACCAG+TGG | - | chr1_4:3505269-3505288 | Msa0144060:intron | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | - | chr1_4:3505522-3505541 | Msa0144060:CDS | 45.0% |
| TGTGTTTCAGCAGACTTAGG+TGG | - | chr1_4:3505976-3505995 | Msa0144060:intron | 45.0% | |
| GTGAATTCTACTTACCCGGT+AGG | - | chr1_4:3506033-3506052 | Msa0144060:intron | 45.0% | |
| !!! | TTTTATTAAAAATTATAACT+AGG | - | chr1_4:3505637-3505656 | Msa0144060:CDS | 5.0% |
| !!! | TTTTGAATTTATAATAATTT+AGG | - | chr1_4:3505713-3505732 | Msa0144060:CDS | 5.0% |
| !! | AAATAATTTATAATTTAAGA+GGG | + | chr1_4:3505768-3505787 | None:intergenic | 5.0% |
| !! | TAAATAATTTATAATTTAAG+AGG | + | chr1_4:3505769-3505788 | None:intergenic | 5.0% |
| !!! | TTTTATTAAAAATTATAACT+AGG | - | chr1_4:3505637-3505656 | Msa0144060:CDS | 5.0% |
| !!! | TTTTGAATTTATAATAATTT+AGG | - | chr1_4:3505713-3505732 | Msa0144060:CDS | 5.0% |
| !! | AAATAATTTATAATTTAAGA+GGG | + | chr1_4:3505768-3505787 | None:intergenic | 5.0% |
| !! | TAAATAATTTATAATTTAAG+AGG | + | chr1_4:3505769-3505788 | None:intergenic | 5.0% |
| CTTGCATTGTGACCAGTGGT+TGG | - | chr1_4:3505273-3505292 | Msa0144060:intron | 50.0% | |
| CTTGCATTGTGACCAGTGGT+TGG | - | chr1_4:3505273-3505292 | Msa0144060:intron | 50.0% | |
| GGCAAATGGCTTCCAACCAC+TGG | + | chr1_4:3505288-3505307 | None:intergenic | 55.0% | |
| GGCAAATGGCTTCCAACCAC+TGG | + | chr1_4:3505288-3505307 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 3504100 | 3506177 | 3504100 | ID=Msa0144060;Name=Msa0144060 |
| chr1_4 | mRNA | 3504100 | 3506177 | 3504100 | ID=Msa0144060-mRNA-1;Parent=Msa0144060;Name=Msa0144060-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.66|1|1|6|0|319 |
| chr1_4 | exon | 3506109 | 3506177 | 3506109 | ID=Msa0144060-mRNA-1:exon:1442;Parent=Msa0144060-mRNA-1 |
| chr1_4 | exon | 3505518 | 3505914 | 3505518 | ID=Msa0144060-mRNA-1:exon:1441;Parent=Msa0144060-mRNA-1 |
| chr1_4 | exon | 3505297 | 3505421 | 3505297 | ID=Msa0144060-mRNA-1:exon:1440;Parent=Msa0144060-mRNA-1 |
| chr1_4 | exon | 3504876 | 3505134 | 3504876 | ID=Msa0144060-mRNA-1:exon:1439;Parent=Msa0144060-mRNA-1 |
| chr1_4 | exon | 3504227 | 3504291 | 3504227 | ID=Msa0144060-mRNA-1:exon:1438;Parent=Msa0144060-mRNA-1 |
| chr1_4 | exon | 3504100 | 3504144 | 3504100 | ID=Msa0144060-mRNA-1:exon:1437;Parent=Msa0144060-mRNA-1 |
| chr1_4 | CDS | 3506109 | 3506177 | 3506109 | ID=Msa0144060-mRNA-1:cds;Parent=Msa0144060-mRNA-1 |
| chr1_4 | CDS | 3505518 | 3505914 | 3505518 | ID=Msa0144060-mRNA-1:cds;Parent=Msa0144060-mRNA-1 |
| chr1_4 | CDS | 3505297 | 3505421 | 3505297 | ID=Msa0144060-mRNA-1:cds;Parent=Msa0144060-mRNA-1 |
| chr1_4 | CDS | 3504876 | 3505134 | 3504876 | ID=Msa0144060-mRNA-1:cds;Parent=Msa0144060-mRNA-1 |
| chr1_4 | CDS | 3504227 | 3504291 | 3504227 | ID=Msa0144060-mRNA-1:cds;Parent=Msa0144060-mRNA-1 |
| chr1_4 | CDS | 3504100 | 3504144 | 3504100 | ID=Msa0144060-mRNA-1:cds;Parent=Msa0144060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
