Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145540 | XP_003589275.1 | 89.384 | 292 | 20 | 1 | 1 | 292 | 1 | 281 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145540 | sp|Q8RYD1|REM16_ARATH | 34.164 | 281 | 151 | 9 | 8 | 286 | 11 | 259 | 3.71e-41 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145540 | G7I4K9 | 89.384 | 292 | 20 | 1 | 1 | 292 | 1 | 281 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0145540 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145540 | MtrunA17_Chr1g0154151 | 89.883 | 257 | 15 | 1 | 36 | 292 | 19 | 264 | 8.36e-171 | 476 |
| Msa0145540 | MtrunA17_Chr1g0154191 | 71.000 | 300 | 70 | 7 | 1 | 292 | 1 | 291 | 3.04e-146 | 415 |
| Msa0145540 | MtrunA17_Chr1g0154171 | 70.569 | 299 | 70 | 6 | 2 | 292 | 3 | 291 | 2.15e-139 | 397 |
| Msa0145540 | MtrunA17_Chr1g0154211 | 58.824 | 323 | 95 | 5 | 3 | 291 | 4 | 322 | 3.83e-129 | 373 |
| Msa0145540 | MtrunA17_Chr1g0154161 | 62.585 | 294 | 57 | 4 | 3 | 292 | 11 | 255 | 2.63e-121 | 350 |
| Msa0145540 | MtrunA17_Chr1g0154131 | 60.839 | 286 | 72 | 6 | 7 | 291 | 169 | 415 | 5.91e-113 | 334 |
| Msa0145540 | MtrunA17_Chr1g0154131 | 69.565 | 161 | 49 | 0 | 4 | 164 | 8 | 168 | 3.51e-75 | 237 |
| Msa0145540 | MtrunA17_Chr1g0154111 | 59.150 | 306 | 95 | 8 | 7 | 292 | 11 | 306 | 5.05e-112 | 335 |
| Msa0145540 | MtrunA17_Chr1g0154111 | 55.869 | 213 | 73 | 9 | 36 | 231 | 368 | 576 | 2.32e-58 | 196 |
| Msa0145540 | MtrunA17_Chr1g0154101 | 48.698 | 384 | 93 | 7 | 7 | 291 | 169 | 547 | 9.01e-105 | 323 |
| Msa0145540 | MtrunA17_Chr1g0154101 | 71.605 | 162 | 45 | 1 | 4 | 164 | 7 | 168 | 3.96e-75 | 245 |
| Msa0145540 | MtrunA17_Chr1g0154101 | 27.915 | 283 | 182 | 7 | 19 | 292 | 503 | 772 | 3.93e-22 | 96.3 |
| Msa0145540 | MtrunA17_Chr1g0154241 | 60.618 | 259 | 66 | 3 | 1 | 226 | 1 | 256 | 6.96e-102 | 299 |
| Msa0145540 | MtrunA17_Chr1g0154071 | 52.980 | 302 | 107 | 6 | 10 | 291 | 145 | 431 | 2.32e-92 | 282 |
| Msa0145540 | MtrunA17_Chr1g0154071 | 69.925 | 133 | 40 | 0 | 4 | 136 | 10 | 142 | 1.46e-60 | 200 |
| Msa0145540 | MtrunA17_Chr1g0154251 | 56.504 | 246 | 61 | 4 | 7 | 206 | 12 | 257 | 1.01e-88 | 273 |
| Msa0145540 | MtrunA17_Chr1g0154041 | 32.414 | 290 | 169 | 6 | 21 | 291 | 15 | 296 | 4.07e-35 | 133 |
| Msa0145540 | MtrunA17_Chr1g0154041 | 26.897 | 290 | 181 | 7 | 19 | 292 | 252 | 526 | 4.90e-19 | 87.0 |
| Msa0145540 | MtrunA17_Chr7g0233561 | 25.448 | 279 | 156 | 5 | 22 | 291 | 19 | 254 | 3.35e-16 | 77.4 |
| Msa0145540 | MtrunA17_Chr3g0131891 | 35.870 | 92 | 58 | 1 | 20 | 110 | 17 | 108 | 2.48e-14 | 72.4 |
| Msa0145540 | MtrunA17_Chr7g0233571 | 32.990 | 97 | 64 | 1 | 15 | 110 | 3 | 99 | 2.24e-12 | 65.1 |
| Msa0145540 | MtrunA17_Chr4g0033961 | 38.824 | 85 | 52 | 0 | 26 | 110 | 11 | 95 | 2.95e-12 | 66.6 |
| Msa0145540 | MtrunA17_Chr7g0233531 | 38.667 | 75 | 46 | 0 | 37 | 111 | 2 | 76 | 3.51e-12 | 65.5 |
| Msa0145540 | MtrunA17_Chr1g0162441 | 39.744 | 78 | 47 | 0 | 33 | 110 | 19 | 96 | 6.70e-12 | 65.5 |
| Msa0145540 | MtrunA17_Chr3g0077451 | 38.158 | 76 | 47 | 0 | 35 | 110 | 10 | 85 | 9.96e-12 | 63.5 |
| Msa0145540 | MtrunA17_Chr7g0233541 | 35.443 | 79 | 51 | 0 | 37 | 115 | 2 | 80 | 1.42e-11 | 63.9 |
| Msa0145540 | MtrunA17_Chr1g0163221 | 26.937 | 271 | 148 | 9 | 20 | 285 | 9 | 234 | 1.75e-11 | 63.9 |
| Msa0145540 | MtrunA17_Chr4g0067431 | 27.925 | 265 | 148 | 11 | 20 | 276 | 13 | 242 | 3.87e-11 | 62.8 |
| Msa0145540 | MtrunA17_Chr3g0077411 | 34.021 | 97 | 62 | 2 | 20 | 114 | 260 | 356 | 6.49e-11 | 62.8 |
| Msa0145540 | MtrunA17_Chr1g0162411 | 38.095 | 84 | 52 | 0 | 28 | 111 | 14 | 97 | 7.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145540 | AT4G33280.1 | 34.164 | 281 | 151 | 9 | 8 | 286 | 11 | 259 | 3.77e-42 | 148 |
| Msa0145540 | AT4G33280.2 | 54.400 | 125 | 55 | 2 | 8 | 131 | 11 | 134 | 4.76e-42 | 146 |
| Msa0145540 | AT4G33280.3 | 54.400 | 125 | 55 | 2 | 8 | 131 | 11 | 134 | 7.19e-41 | 146 |
| Msa0145540 | AT4G34400.2 | 36.047 | 86 | 55 | 0 | 35 | 120 | 29 | 114 | 3.71e-17 | 81.3 |
| Msa0145540 | AT4G34400.1 | 36.047 | 86 | 55 | 0 | 35 | 120 | 29 | 114 | 3.71e-17 | 81.3 |
| Msa0145540 | AT3G18990.1 | 24.735 | 283 | 171 | 9 | 19 | 276 | 5 | 270 | 4.48e-14 | 72.0 |
| Msa0145540 | AT3G18990.2 | 25.442 | 283 | 169 | 10 | 19 | 276 | 5 | 270 | 7.21e-14 | 71.6 |
| Msa0145540 | AT5G66980.1 | 35.652 | 115 | 65 | 3 | 33 | 143 | 21 | 130 | 9.38e-13 | 68.2 |
| Msa0145540 | AT4G01580.1 | 36.458 | 96 | 60 | 1 | 22 | 117 | 31 | 125 | 4.86e-12 | 63.9 |
| Msa0145540 | AT3G18960.2 | 37.895 | 95 | 47 | 2 | 34 | 117 | 32 | 125 | 8.56e-12 | 63.5 |
| Msa0145540 | AT3G18960.1 | 37.895 | 95 | 47 | 2 | 34 | 117 | 32 | 125 | 1.02e-11 | 63.5 |
| Msa0145540 | AT5G60130.5 | 36.264 | 91 | 53 | 2 | 33 | 118 | 25 | 115 | 1.66e-11 | 63.5 |
| Msa0145540 | AT5G60130.3 | 37.079 | 89 | 51 | 2 | 35 | 118 | 1 | 89 | 2.55e-11 | 63.5 |
| Msa0145540 | AT1G49475.1 | 37.037 | 81 | 50 | 1 | 31 | 111 | 44 | 123 | 2.68e-11 | 62.0 |
| Msa0145540 | AT5G60130.2 | 37.079 | 89 | 51 | 2 | 35 | 118 | 27 | 115 | 3.38e-11 | 63.2 |
| Msa0145540 | AT5G60130.4 | 37.079 | 89 | 51 | 2 | 35 | 118 | 24 | 112 | 3.43e-11 | 63.2 |
| Msa0145540 | AT3G18960.3 | 39.506 | 81 | 47 | 1 | 30 | 110 | 4 | 82 | 3.48e-11 | 61.2 |
| Msa0145540 | AT5G60140.1 | 33.028 | 109 | 69 | 2 | 13 | 118 | 7 | 114 | 3.59e-11 | 63.2 |
| Msa0145540 | AT3G53310.1 | 38.462 | 78 | 48 | 0 | 33 | 110 | 22 | 99 | 3.70e-11 | 62.8 |
| Msa0145540 | AT5G60130.1 | 37.079 | 89 | 51 | 2 | 35 | 118 | 27 | 115 | 3.75e-11 | 63.2 |
| Msa0145540 | AT3G06220.1 | 29.412 | 85 | 59 | 1 | 34 | 118 | 22 | 105 | 5.67e-11 | 60.8 |
Find 59 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTATCATAACAAAATA+TGG | 0.179614 | 1_4:+5213426 | None:intergenic |
| CCAGAAAATGTGACACTTAA+AGG | 0.229513 | 1_4:-5214381 | Msa0145540:CDS |
| CTTGGGAAGAAGACATTTAC+TGG | 0.303398 | 1_4:-5215769 | Msa0145540:CDS |
| CCTCCCAATCAACCGGAAAA+AGG | 0.307148 | 1_4:-5214005 | Msa0145540:CDS |
| GTCTTCCTCGCTTCTTAGTC+TGG | 0.318640 | 1_4:+5213950 | None:intergenic |
| AAACTGAACAAGAAGGTATC+AGG | 0.326497 | 1_4:-5214137 | Msa0145540:CDS |
| TGCTTCCCCTGAGCAGTTCA+TGG | 0.329585 | 1_4:-5214052 | Msa0145540:CDS |
| CTCATCTTCCTTCCCACTGA+TGG | 0.337866 | 1_4:+5213482 | None:intergenic |
| TGGAAGATAGCAACGGATCT+TGG | 0.341483 | 1_4:-5215787 | Msa0145540:CDS |
| TTTAATGTTATAGTCTTTCA+AGG | 0.390683 | 1_4:-5214216 | Msa0145540:CDS |
| ACTGAGCGAAATGGATGAAC+TGG | 0.400729 | 1_4:+5215738 | None:intergenic |
| GGAAGATAGCAACGGATCTT+GGG | 0.407263 | 1_4:-5215786 | Msa0145540:CDS |
| ACAAGTGTGACCTCATTAAC+AGG | 0.432237 | 1_4:+5213973 | None:intergenic |
| GTCAATACTGTTCTTAATGC+TGG | 0.435062 | 1_4:-5214084 | Msa0145540:CDS |
| AGAAGCGCATGATTATGATT+TGG | 0.435948 | 1_4:-5213896 | Msa0145540:CDS |
| GCATCAGCCATGAACTGCTC+AGG | 0.438299 | 1_4:+5214045 | None:intergenic |
| ACGTGAACCACTGATATTGC+AGG | 0.449113 | 1_4:+5213401 | None:intergenic |
| CGAAATGGATGAACTGGAAA+TGG | 0.457630 | 1_4:+5215744 | None:intergenic |
| CGATAATACTGTTTACTTCG+TGG | 0.466991 | 1_4:-5214319 | Msa0145540:CDS |
| AAGCGTAACTTCTGTTCTGC+AGG | 0.476446 | 1_4:+5213183 | None:intergenic |
| GTGCTTCCCTCCCAATCAAC+CGG | 0.484567 | 1_4:-5214012 | Msa0145540:CDS |
| GTAACTTCTGTTCTGCAGGC+AGG | 0.484670 | 1_4:+5213187 | None:intergenic |
| TTCCTTGTCTTTAAATACAA+TGG | 0.493431 | 1_4:-5214249 | Msa0145540:CDS |
| CACCATTGTATTTAAAGACA+AGG | 0.497369 | 1_4:+5214247 | None:intergenic |
| GACCTCATTAACAGGCTGCT+TGG | 0.498736 | 1_4:+5213981 | None:intergenic |
| AGTGGAGTTGAATGGAATGT+AGG | 0.504585 | 1_4:-5214354 | Msa0145540:CDS |
| AAGGTCCTAGTGGAGTTGAA+TGG | 0.506877 | 1_4:-5214362 | Msa0145540:CDS |
| AGCGCATGATTATGATTTGG+TGG | 0.510205 | 1_4:-5213893 | Msa0145540:CDS |
| TATCAGTGGTTCACGTACTC+TGG | 0.518096 | 1_4:-5213394 | Msa0145540:intron |
| CATAACAAAATATGGAAAAG+AGG | 0.519268 | 1_4:+5213434 | None:intergenic |
| CATCAGCCATGAACTGCTCA+GGG | 0.531256 | 1_4:+5214046 | None:intergenic |
| CTGTTTACTTCGTGGACGGT+TGG | 0.535957 | 1_4:-5214311 | Msa0145540:CDS |
| TGTGGAGAAACTGAGCGAAA+TGG | 0.539521 | 1_4:+5215729 | None:intergenic |
| GACCAAGCAGCCTGTTAATG+AGG | 0.554220 | 1_4:-5213983 | Msa0145540:CDS |
| TAACTTCTGTTCTGCAGGCA+GGG | 0.567909 | 1_4:+5213188 | None:intergenic |
| AATACTGTTTACTTCGTGGA+CGG | 0.576994 | 1_4:-5214315 | Msa0145540:CDS |
| ACAAGAAGGTATCAGGGAGA+AGG | 0.587198 | 1_4:-5214130 | Msa0145540:CDS |
| AACTGAACAAGAAGGTATCA+GGG | 0.591490 | 1_4:-5214136 | Msa0145540:CDS |
| GTGGAGTTGAATGGAATGTA+GGG | 0.596552 | 1_4:-5214353 | Msa0145540:CDS |
| TGATTTGGTGGCTTGCAACA+AGG | 0.599399 | 1_4:-5213881 | Msa0145540:CDS |
| TCCACAGAGGCATCCATCAG+TGG | 0.602764 | 1_4:-5213495 | Msa0145540:intron |
| GAAAAGAGGAGGTAAATGAG+TGG | 0.607954 | 1_4:+5213448 | None:intergenic |
| GTGACACTTAAAGGTCCTAG+TGG | 0.610309 | 1_4:-5214372 | Msa0145540:CDS |
| CCACAGAGGCATCCATCAGT+GGG | 0.612133 | 1_4:-5213494 | Msa0145540:intron |
| AGAGGCATCCATCAGTGGGA+AGG | 0.619891 | 1_4:-5213490 | Msa0145540:CDS |
| TGTGTAGCAGAGAAATGACA+TGG | 0.620873 | 1_4:+5213214 | None:intergenic |
| AAGTTGCTGTTCAAAATCAG+TGG | 0.622618 | 1_4:+5215706 | None:intergenic |
| AACAAAATATGGAAAAGAGG+AGG | 0.626074 | 1_4:+5213437 | None:intergenic |
| AAAAGAGGAGGTAAATGAGT+GGG | 0.627707 | 1_4:+5213449 | None:intergenic |
| ACATTCCATTCAACTCCACT+AGG | 0.628309 | 1_4:+5214357 | None:intergenic |
| GTTACGCTTCGAAATGCAAG+AGG | 0.637695 | 1_4:-5213169 | Msa0145540:CDS |
| ATGAAATCCTGCAATATCAG+TGG | 0.639928 | 1_4:-5213408 | Msa0145540:CDS |
| AATGCTGAAACTGAACAAGA+AGG | 0.648105 | 1_4:-5214144 | Msa0145540:CDS |
| TTTCAAATGGAAGATAGCAA+CGG | 0.648669 | 1_4:-5215794 | None:intergenic |
| GCTTGCAACAAGGAACACTC+AGG | 0.676869 | 1_4:-5213871 | Msa0145540:intron |
| GCTGTTCAAAATCAGTGGTG+TGG | 0.691183 | 1_4:+5215711 | None:intergenic |
| CTTGTCCAGACTAAGAAGCG+AGG | 0.723376 | 1_4:-5213955 | Msa0145540:CDS |
| ATCAGCCATGAACTGCTCAG+GGG | 0.726483 | 1_4:+5214047 | None:intergenic |
| GTGTAGCAGAGAAATGACAT+GGG | 0.727177 | 1_4:+5213215 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTATTTTTATTTTTA+AGG | + | chr1_4:5213790-5213809 | None:intergenic | 0.0% |
| !!! | TTTATAAAGTTTTCATATGT+GGG | - | chr1_4:5213326-5213345 | Msa0145540:intron | 15.0% |
| !!! | TGTTTTTAAAATAATAGCTT+AGG | - | chr1_4:5213536-5213555 | Msa0145540:intron | 15.0% |
| !!! | AAAAAAGCATGAATTTATTA+GGG | + | chr1_4:5214146-5214165 | None:intergenic | 15.0% |
| !!! | AAAAAAAGCATGAATTTATT+AGG | + | chr1_4:5214147-5214166 | None:intergenic | 15.0% |
| !!! | TAATAAATTCATGCTTTTTT+TGG | - | chr1_4:5214146-5214165 | Msa0145540:CDS | 15.0% |
| !!! | GAAATTTATAATTTTATTGC+AGG | - | chr1_4:5214502-5214521 | Msa0145540:intron | 15.0% |
| !! | TTCATTATCATAACAAAATA+TGG | + | chr1_4:5215524-5215543 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTCATTTAGAACA+TGG | + | chr1_4:5213299-5213318 | None:intergenic | 20.0% |
| !!! | CTTTATAAAGTTTTCATATG+TGG | - | chr1_4:5213325-5213344 | Msa0145540:intron | 20.0% |
| !! | AGATGCAAAATTTAAAAGAT+GGG | + | chr1_4:5213434-5213453 | None:intergenic | 20.0% |
| !! | AAGATGCAAAATTTAAAAGA+TGG | + | chr1_4:5213435-5213454 | None:intergenic | 20.0% |
| !! | TAAAATAATAGCTTAGGAAT+AGG | - | chr1_4:5213542-5213561 | Msa0145540:intron | 20.0% |
| !!! | ACAATTTAAGAGTTTGTTTA+AGG | - | chr1_4:5213814-5213833 | Msa0145540:intron | 20.0% |
| !!! | CAATTTAAGAGTTTGTTTAA+GGG | - | chr1_4:5213815-5213834 | Msa0145540:intron | 20.0% |
| !! | TTTAATGTTATAGTCTTTCA+AGG | - | chr1_4:5214731-5214750 | Msa0145540:intron | 20.0% |
| !!! | TGTTTATGTTGATGATATTA+TGG | + | chr1_4:5215201-5215220 | None:intergenic | 20.0% |
| !!! | TAAAATAAAGCATCACAAAA+GGG | + | chr1_4:5215588-5215607 | None:intergenic | 20.0% |
| !! | GAGATAAAACAACATTATTT+GGG | + | chr1_4:5215613-5215632 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATTATT+TGG | + | chr1_4:5215614-5215633 | None:intergenic | 20.0% |
| !! | CATAAGTTACTTAAAGATAA+GGG | + | chr1_4:5215640-5215659 | None:intergenic | 20.0% |
| !! | ACATAAGTTACTTAAAGATA+AGG | + | chr1_4:5215641-5215660 | None:intergenic | 20.0% |
| ! | AGAAAAAAAAAATCTCAGCT+CGG | - | chr1_4:5213664-5213683 | Msa0145540:intron | 25.0% |
| ! | AAAAAAAATGTACCAAAACG+CGG | + | chr1_4:5213745-5213764 | None:intergenic | 25.0% |
| !!! | TAAGGGCTTTTTAATTTAAG+AGG | - | chr1_4:5213832-5213851 | Msa0145540:intron | 25.0% |
| !!! | GTAGTGTCGTTTTTAAATAA+TGG | - | chr1_4:5214194-5214213 | Msa0145540:CDS | 25.0% |
| !!! | TTGTCGAATTTTTTATGTCA+TGG | + | chr1_4:5214271-5214290 | None:intergenic | 25.0% |
| !! | AATTCGACAAAGTTTTACAT+TGG | - | chr1_4:5214281-5214300 | Msa0145540:CDS | 25.0% |
| ! | CAATGTATCATAATCTCAAA+TGG | - | chr1_4:5214480-5214499 | Msa0145540:intron | 25.0% |
| !! | AAATTGTCTGAGAATGTTTT+AGG | + | chr1_4:5214533-5214552 | None:intergenic | 25.0% |
| ! | TTCCTTGTCTTTAAATACAA+TGG | - | chr1_4:5214698-5214717 | Msa0145540:intron | 25.0% |
| !!! | ACAGAACAATTAGCTTTTTT+CGG | + | chr1_4:5215025-5215044 | None:intergenic | 25.0% |
| ! | TGAATATTTGAAGAAAAGAC+TGG | - | chr1_4:5215247-5215266 | Msa0145540:intron | 25.0% |
| ! | AGACTTAGAATGAAATCAAA+GGG | + | chr1_4:5215294-5215313 | None:intergenic | 25.0% |
| !! | TAAGCTCTGACATAAATATA+AGG | + | chr1_4:5215396-5215415 | None:intergenic | 25.0% |
| ! | CATAACAAAATATGGAAAAG+AGG | + | chr1_4:5215516-5215535 | None:intergenic | 25.0% |
| !! | GTAAAATAAAGCATCACAAA+AGG | + | chr1_4:5215589-5215608 | None:intergenic | 25.0% |
| ! | ATTCAATATTATACTCCAAC+TGG | + | chr1_4:5215691-5215710 | None:intergenic | 25.0% |
| ! | ATAAAGTTTTCATATGTGGG+TGG | - | chr1_4:5213329-5213348 | Msa0145540:intron | 30.0% |
| !!! | TCCGTGCTATATTTTGAAAT+CGG | - | chr1_4:5213936-5213955 | Msa0145540:CDS | 30.0% |
| AAACTTGAACCTAGTAAACT+TGG | - | chr1_4:5213962-5213981 | Msa0145540:CDS | 30.0% | |
| AACTTGAACCTAGTAAACTT+GGG | - | chr1_4:5213963-5213982 | Msa0145540:CDS | 30.0% | |
| CAAACACTAGAAAGATTGAA+AGG | + | chr1_4:5214095-5214114 | None:intergenic | 30.0% | |
| !!! | TCATGCTTTTTTTGGCTTAA+AGG | - | chr1_4:5214154-5214173 | Msa0145540:CDS | 30.0% |
| TGGCTTAAAGGAAATGAATA+AGG | - | chr1_4:5214166-5214185 | Msa0145540:CDS | 30.0% | |
| TAAACCCTAAACTCGATAAA+AGG | + | chr1_4:5214333-5214352 | None:intergenic | 30.0% | |
| !! | TTTTATCGAGTTTAGGGTTT+AGG | - | chr1_4:5214332-5214351 | Msa0145540:CDS | 30.0% |
| ! | CTTGTGATGATGATTAATAG+CGG | - | chr1_4:5214429-5214448 | Msa0145540:intron | 30.0% |
| CACCATTGTATTTAAAGACA+AGG | + | chr1_4:5214703-5214722 | None:intergenic | 30.0% | |
| ! | TCCTATTTTGTTGGAAAATG+TGG | - | chr1_4:5214779-5214798 | Msa0145540:intron | 30.0% |
| ! | CCTATTTTGTTGGAAAATGT+GGG | - | chr1_4:5214780-5214799 | Msa0145540:intron | 30.0% |
| ! | AACTTTTGCCATCTTGATTT+TGG | - | chr1_4:5215124-5215143 | Msa0145540:intron | 30.0% |
| !!! | ATTTTGGCTTTTCCCTTAAT+GGG | - | chr1_4:5215140-5215159 | Msa0145540:intron | 30.0% |
| AGTATAAAAGGACCCATTAA+GGG | + | chr1_4:5215155-5215174 | None:intergenic | 30.0% | |
| ! | TACTTGACTGAGAGTATAAA+AGG | + | chr1_4:5215167-5215186 | None:intergenic | 30.0% |
| TTCTTCAAATATTCAGAACG+AGG | + | chr1_4:5215242-5215261 | None:intergenic | 30.0% | |
| GAGACTTAGAATGAAATCAA+AGG | + | chr1_4:5215295-5215314 | None:intergenic | 30.0% | |
| CATTCTAAGTCTCAAAACTA+TGG | - | chr1_4:5215302-5215321 | Msa0145540:intron | 30.0% | |
| AACAAAATATGGAAAAGAGG+AGG | + | chr1_4:5215513-5215532 | None:intergenic | 30.0% | |
| AAGTTACTTAAAGATAAGGG+TGG | + | chr1_4:5215637-5215656 | None:intergenic | 30.0% | |
| ! | AAGTTGCTGTTCAAAATCAG+TGG | + | chr1_4:5213244-5213263 | None:intergenic | 35.0% |
| !!! | TCATGTTCATGCTACTTTTC+AGG | - | chr1_4:5213372-5213391 | Msa0145540:intron | 35.0% |
| TAATAGCTTAGGAATAGGCA+TGG | - | chr1_4:5213547-5213566 | Msa0145540:intron | 35.0% | |
| CCCGATTTCAAAATATAGCA+CGG | + | chr1_4:5213940-5213959 | None:intergenic | 35.0% | |
| !!! | CCGTGCTATATTTTGAAATC+GGG | - | chr1_4:5213937-5213956 | Msa0145540:CDS | 35.0% |
| GCAATAAAACATAAACCCGT+GGG | + | chr1_4:5214025-5214044 | None:intergenic | 35.0% | |
| TCACAGTTCTTAAGTAAGCA+TGG | + | chr1_4:5214047-5214066 | None:intergenic | 35.0% | |
| CTAAACTCGATAAAAGGAGA+GGG | + | chr1_4:5214327-5214346 | None:intergenic | 35.0% | |
| ! | CTCTCCTTTTATCGAGTTTA+GGG | - | chr1_4:5214326-5214345 | Msa0145540:CDS | 35.0% |
| ! | CCTTTAAGTGTCACATTTTC+TGG | + | chr1_4:5214569-5214588 | None:intergenic | 35.0% |
| CCAGAAAATGTGACACTTAA+AGG | - | chr1_4:5214566-5214585 | Msa0145540:intron | 35.0% | |
| CGATAATACTGTTTACTTCG+TGG | - | chr1_4:5214628-5214647 | Msa0145540:intron | 35.0% | |
| AATACTGTTTACTTCGTGGA+CGG | - | chr1_4:5214632-5214651 | Msa0145540:intron | 35.0% | |
| ! | AGAAAGCTTTTGTGAGAAAG+CGG | - | chr1_4:5214754-5214773 | Msa0145540:intron | 35.0% |
| ! | CCCACATTTTCCAACAAAAT+AGG | + | chr1_4:5214783-5214802 | None:intergenic | 35.0% |
| AATGCTGAAACTGAACAAGA+AGG | - | chr1_4:5214803-5214822 | Msa0145540:intron | 35.0% | |
| !! | AAACTGAACAAGAAGGTATC+AGG | - | chr1_4:5214810-5214829 | Msa0145540:intron | 35.0% |
| !! | AACTGAACAAGAAGGTATCA+GGG | - | chr1_4:5214811-5214830 | Msa0145540:intron | 35.0% |
| GTCAATACTGTTCTTAATGC+TGG | - | chr1_4:5214863-5214882 | Msa0145540:intron | 35.0% | |
| !!! | GAACAATTAGCTTTTTTCGG+TGG | + | chr1_4:5215022-5215041 | None:intergenic | 35.0% |
| ! | AGAAGCGCATGATTATGATT+TGG | - | chr1_4:5215051-5215070 | Msa0145540:intron | 35.0% |
| !!! | GATTTTGGCTTTTCCCTTAA+TGG | - | chr1_4:5215139-5215158 | Msa0145540:intron | 35.0% |
| GAGTATAAAAGGACCCATTA+AGG | + | chr1_4:5215156-5215175 | None:intergenic | 35.0% | |
| AAAAGAGGAGGTAAATGAGT+GGG | + | chr1_4:5215501-5215520 | None:intergenic | 35.0% | |
| ATGAAATCCTGCAATATCAG+TGG | - | chr1_4:5215539-5215558 | Msa0145540:intron | 35.0% | |
| CTTGGGAAGAAGACATTTAC+TGG | - | chr1_4:5213178-5213197 | Msa0145540:CDS | 40.0% | |
| CGAAATGGATGAACTGGAAA+TGG | + | chr1_4:5213206-5213225 | None:intergenic | 40.0% | |
| ATTGAAATCGTGGATGGCAA+AGG | + | chr1_4:5213636-5213655 | None:intergenic | 40.0% | |
| TTTGCCATCCACGATTTCAA+TGG | - | chr1_4:5213635-5213654 | Msa0145540:intron | 40.0% | |
| TTGCCATCCACGATTTCAAT+GGG | - | chr1_4:5213636-5213655 | Msa0145540:intron | 40.0% | |
| AATTTCGAGACAAGCAAGAC+AGG | - | chr1_4:5213864-5213883 | Msa0145540:intron | 40.0% | |
| TTCAAAATATAGCACGGACG+CGG | + | chr1_4:5213934-5213953 | None:intergenic | 40.0% | |
| GGCAATAAAACATAAACCCG+TGG | + | chr1_4:5214026-5214045 | None:intergenic | 40.0% | |
| CCTAAACTCGATAAAAGGAG+AGG | + | chr1_4:5214328-5214347 | None:intergenic | 40.0% | |
| ! | CCTCTCCTTTTATCGAGTTT+AGG | - | chr1_4:5214325-5214344 | Msa0145540:CDS | 40.0% |
| ACATTCCATTCAACTCCACT+AGG | + | chr1_4:5214593-5214612 | None:intergenic | 40.0% | |
| AGTGGAGTTGAATGGAATGT+AGG | - | chr1_4:5214593-5214612 | Msa0145540:intron | 40.0% | |
| GTGGAGTTGAATGGAATGTA+GGG | - | chr1_4:5214594-5214613 | Msa0145540:intron | 40.0% | |
| ! | AAAGCGGCTTCCTATTTTGT+TGG | - | chr1_4:5214770-5214789 | Msa0145540:intron | 40.0% |
| ACAAGTGTGACCTCATTAAC+AGG | + | chr1_4:5214977-5214996 | None:intergenic | 40.0% | |
| ! | AGCGCATGATTATGATTTGG+TGG | - | chr1_4:5215054-5215073 | Msa0145540:intron | 40.0% |
| GGGAAAAGCCAAAATCAAGA+TGG | + | chr1_4:5215135-5215154 | None:intergenic | 40.0% | |
| !! | ATACAAGTGTCGGTTTGCTA+GGG | + | chr1_4:5215348-5215367 | None:intergenic | 40.0% |
| !! | TATACAAGTGTCGGTTTGCT+AGG | + | chr1_4:5215349-5215368 | None:intergenic | 40.0% |
| TAGCAAACCGACACTTGTAT+AGG | - | chr1_4:5215348-5215367 | Msa0145540:intron | 40.0% | |
| AGCAAACCGACACTTGTATA+GGG | - | chr1_4:5215349-5215368 | Msa0145540:intron | 40.0% | |
| ACTCTTCCCTATACAAGTGT+CGG | + | chr1_4:5215358-5215377 | None:intergenic | 40.0% | |
| TGAACTGTTCAATTCCACAG+AGG | - | chr1_4:5215439-5215458 | Msa0145540:intron | 40.0% | |
| GAAAAGAGGAGGTAAATGAG+TGG | + | chr1_4:5215502-5215521 | None:intergenic | 40.0% | |
| GCTTGAGAAACTAATCCAGT+TGG | - | chr1_4:5215673-5215692 | Msa0145540:intron | 40.0% | |
| GTGTAGCAGAGAAATGACAT+GGG | + | chr1_4:5215735-5215754 | None:intergenic | 40.0% | |
| TGTGTAGCAGAGAAATGACA+TGG | + | chr1_4:5215736-5215755 | None:intergenic | 40.0% | |
| TGGAAGATAGCAACGGATCT+TGG | - | chr1_4:5213160-5213179 | Msa0145540:CDS | 45.0% | |
| GGAAGATAGCAACGGATCTT+GGG | - | chr1_4:5213161-5213180 | Msa0145540:CDS | 45.0% | |
| ACTGAGCGAAATGGATGAAC+TGG | + | chr1_4:5213212-5213231 | None:intergenic | 45.0% | |
| TGTGGAGAAACTGAGCGAAA+TGG | + | chr1_4:5213221-5213240 | None:intergenic | 45.0% | |
| GCTGTTCAAAATCAGTGGTG+TGG | + | chr1_4:5213239-5213258 | None:intergenic | 45.0% | |
| TTAGGAATAGGCATGGCAAC+AGG | - | chr1_4:5213554-5213573 | Msa0145540:intron | 45.0% | |
| TAGGAATAGGCATGGCAACA+GGG | - | chr1_4:5213555-5213574 | Msa0145540:intron | 45.0% | |
| TGCCATCCACGATTTCAATG+GGG | - | chr1_4:5213637-5213656 | Msa0145540:intron | 45.0% | |
| CTTTCACCCCATTGAAATCG+TGG | + | chr1_4:5213646-5213665 | None:intergenic | 45.0% | |
| GGGGATACTTGAACACTATC+AGG | + | chr1_4:5213692-5213711 | None:intergenic | 45.0% | |
| TTCATGTCAGGGTTGAGATG+AGG | + | chr1_4:5213716-5213735 | None:intergenic | 45.0% | |
| TCTCAACCCTGACATGAACT+TGG | - | chr1_4:5213718-5213737 | Msa0145540:intron | 45.0% | |
| TGGGGAAACCCAAGTTTACT+AGG | + | chr1_4:5213974-5213993 | None:intergenic | 45.0% | |
| TTGGGTTTCCCCATCTAAGT+CGG | - | chr1_4:5213981-5214000 | Msa0145540:CDS | 45.0% | |
| GATGATGCAGTCACGAACAT+AGG | - | chr1_4:5214360-5214379 | Msa0145540:CDS | 45.0% | |
| GTGACACTTAAAGGTCCTAG+TGG | - | chr1_4:5214575-5214594 | Msa0145540:intron | 45.0% | |
| AAGGTCCTAGTGGAGTTGAA+TGG | - | chr1_4:5214585-5214604 | Msa0145540:intron | 45.0% | |
| !! | ACAAGAAGGTATCAGGGAGA+AGG | - | chr1_4:5214817-5214836 | Msa0145540:intron | 45.0% |
| ! | CTTTTTCCGGTTGATTGGGA+GGG | + | chr1_4:5214944-5214963 | None:intergenic | 45.0% |
| ! | GGTCCTTTTTCCGGTTGATT+GGG | + | chr1_4:5214948-5214967 | None:intergenic | 45.0% |
| ! | TGGTCCTTTTTCCGGTTGAT+TGG | + | chr1_4:5214949-5214968 | None:intergenic | 45.0% |
| !! | TGATTTGGTGGCTTGCAACA+AGG | - | chr1_4:5215066-5215085 | Msa0145540:intron | 45.0% |
| ACGTGAACCACTGATATTGC+AGG | + | chr1_4:5215549-5215568 | None:intergenic | 45.0% | |
| TATCAGTGGTTCACGTACTC+TGG | - | chr1_4:5215553-5215572 | Msa0145540:intron | 45.0% | |
| TAACTTCTGTTCTGCAGGCA+GGG | + | chr1_4:5215762-5215781 | None:intergenic | 45.0% | |
| AAGCGTAACTTCTGTTCTGC+AGG | + | chr1_4:5215767-5215786 | None:intergenic | 45.0% | |
| GTTACGCTTCGAAATGCAAG+AGG | - | chr1_4:5215778-5215797 | Msa0145540:CDS | 45.0% | |
| ! | ACCCGAATCCCATCTGGTTT+GGG | + | chr1_4:5213604-5213623 | None:intergenic | 50.0% |
| AACCCGAATCCCATCTGGTT+TGG | + | chr1_4:5213605-5213624 | None:intergenic | 50.0% | |
| ! | ACCAGATGGGATTCGGGTTT+AGG | - | chr1_4:5213606-5213625 | Msa0145540:intron | 50.0% |
| ACCTAAACCCGAATCCCATC+TGG | + | chr1_4:5213610-5213629 | None:intergenic | 50.0% | |
| CACCCCATTGAAATCGTGGA+TGG | + | chr1_4:5213642-5213661 | None:intergenic | 50.0% | |
| ATGTCAGGGTTGAGATGAGG+CGG | + | chr1_4:5213713-5213732 | None:intergenic | 50.0% | |
| ! | CATGAACTTGGACCGCGTTT+TGG | - | chr1_4:5213730-5213749 | Msa0145540:intron | 50.0% |
| CGAGACAAGCAAGACAGGAT+CGG | - | chr1_4:5213869-5213888 | Msa0145540:intron | 50.0% | |
| GAGACAAGCAAGACAGGATC+GGG | - | chr1_4:5213870-5213889 | Msa0145540:intron | 50.0% | |
| AGACAAGCAAGACAGGATCG+GGG | - | chr1_4:5213871-5213890 | Msa0145540:intron | 50.0% | |
| AATATAGCACGGACGCGGAT+GGG | + | chr1_4:5213929-5213948 | None:intergenic | 50.0% | |
| AAATATAGCACGGACGCGGA+TGG | + | chr1_4:5213930-5213949 | None:intergenic | 50.0% | |
| TGGGTTTCCCCATCTAAGTC+GGG | - | chr1_4:5213982-5214001 | Msa0145540:CDS | 50.0% | |
| CTGTTTACTTCGTGGACGGT+TGG | - | chr1_4:5214636-5214655 | Msa0145540:intron | 50.0% | |
| ATCAGCCATGAACTGCTCAG+GGG | + | chr1_4:5214903-5214922 | None:intergenic | 50.0% | |
| CATCAGCCATGAACTGCTCA+GGG | + | chr1_4:5214904-5214923 | None:intergenic | 50.0% | |
| ! | CCTTTTTCCGGTTGATTGGG+AGG | + | chr1_4:5214945-5214964 | None:intergenic | 50.0% |
| CCTCCCAATCAACCGGAAAA+AGG | - | chr1_4:5214942-5214961 | Msa0145540:intron | 50.0% | |
| ! | AGGCTGCTTGGTCCTTTTTC+CGG | + | chr1_4:5214957-5214976 | None:intergenic | 50.0% |
| GACCAAGCAGCCTGTTAATG+AGG | - | chr1_4:5214964-5214983 | Msa0145540:intron | 50.0% | |
| GACCTCATTAACAGGCTGCT+TGG | + | chr1_4:5214969-5214988 | None:intergenic | 50.0% | |
| CTTGTCCAGACTAAGAAGCG+AGG | - | chr1_4:5214992-5215011 | Msa0145540:intron | 50.0% | |
| GTCTTCCTCGCTTCTTAGTC+TGG | + | chr1_4:5215000-5215019 | None:intergenic | 50.0% | |
| GCTTGCAACAAGGAACACTC+AGG | - | chr1_4:5215076-5215095 | Msa0145540:intron | 50.0% | |
| CTCATCTTCCTTCCCACTGA+TGG | + | chr1_4:5215468-5215487 | None:intergenic | 50.0% | |
| GTAACTTCTGTTCTGCAGGC+AGG | + | chr1_4:5215763-5215782 | None:intergenic | 50.0% | |
| GAATAGGCATGGCAACAGGG+TGG | - | chr1_4:5213558-5213577 | Msa0145540:intron | 55.0% | |
| CCTTTCCCCCCAAACCAGAT+GGG | - | chr1_4:5213593-5213612 | Msa0145540:intron | 55.0% | |
| !! | CGAATCCCATCTGGTTTGGG+GGG | + | chr1_4:5213601-5213620 | None:intergenic | 55.0% |
| !! | CCGAATCCCATCTGGTTTGG+GGG | + | chr1_4:5213602-5213621 | None:intergenic | 55.0% |
| CCCCCAAACCAGATGGGATT+CGG | - | chr1_4:5213599-5213618 | Msa0145540:intron | 55.0% | |
| ! | CCCGAATCCCATCTGGTTTG+GGG | + | chr1_4:5213603-5213622 | None:intergenic | 55.0% |
| CCCCAAACCAGATGGGATTC+GGG | - | chr1_4:5213600-5213619 | Msa0145540:intron | 55.0% | |
| TGTCAGGGTTGAGATGAGGC+GGG | + | chr1_4:5213712-5213731 | None:intergenic | 55.0% | |
| CGCGGTCCAAGTTCATGTCA+GGG | + | chr1_4:5213727-5213746 | None:intergenic | 55.0% | |
| ACGCGGTCCAAGTTCATGTC+AGG | + | chr1_4:5213728-5213747 | None:intergenic | 55.0% | |
| AAGCAAGACAGGATCGGGGA+TGG | - | chr1_4:5213875-5213894 | Msa0145540:CDS | 55.0% | |
| ! | ACAGGATCGGGGATGGATTC+AGG | - | chr1_4:5213882-5213901 | Msa0145540:CDS | 55.0% |
| ! | GATCGGGGATGGATTCAGGA+TGG | - | chr1_4:5213886-5213905 | Msa0145540:CDS | 55.0% |
| GGGTTTCCCCATCTAAGTCG+GGG | - | chr1_4:5213983-5214002 | Msa0145540:CDS | 55.0% | |
| TTTCCCCATCTAAGTCGGGG+CGG | - | chr1_4:5213986-5214005 | Msa0145540:CDS | 55.0% | |
| CGGGTTCATGTTGGTACCCA+CGG | - | chr1_4:5214006-5214025 | Msa0145540:CDS | 55.0% | |
| GGGTTCATGTTGGTACCCAC+GGG | - | chr1_4:5214007-5214026 | Msa0145540:CDS | 55.0% | |
| TGCTTCCCCTGAGCAGTTCA+TGG | - | chr1_4:5214895-5214914 | Msa0145540:intron | 55.0% | |
| GCATCAGCCATGAACTGCTC+AGG | + | chr1_4:5214905-5214924 | None:intergenic | 55.0% | |
| GTGCTTCCCTCCCAATCAAC+CGG | - | chr1_4:5214935-5214954 | Msa0145540:intron | 55.0% | |
| !! | TCCACAGAGGCATCCATCAG+TGG | - | chr1_4:5215452-5215471 | Msa0145540:intron | 55.0% |
| !! | CCACAGAGGCATCCATCAGT+GGG | - | chr1_4:5215453-5215472 | Msa0145540:intron | 55.0% |
| !! | AGAGGCATCCATCAGTGGGA+AGG | - | chr1_4:5215457-5215476 | Msa0145540:intron | 55.0% |
| GCATGGCAACAGGGTGGAGA+CGG | - | chr1_4:5213564-5213583 | Msa0145540:intron | 60.0% | |
| GCCTTTCCCCCCAAACCAGA+TGG | - | chr1_4:5213592-5213611 | Msa0145540:intron | 60.0% | |
| !! | CCCATCTGGTTTGGGGGGAA+AGG | + | chr1_4:5213596-5213615 | None:intergenic | 60.0% |
| GTCAGGGTTGAGATGAGGCG+GGG | + | chr1_4:5213711-5213730 | None:intergenic | 60.0% | |
| TTCCCCATCTAAGTCGGGGC+GGG | - | chr1_4:5213987-5214006 | Msa0145540:CDS | 60.0% | |
| AACCCGCCCCGACTTAGATG+GGG | + | chr1_4:5213992-5214011 | None:intergenic | 60.0% | |
| GAACCCGCCCCGACTTAGAT+GGG | + | chr1_4:5213993-5214012 | None:intergenic | 60.0% | |
| TGAACCCGCCCCGACTTAGA+TGG | + | chr1_4:5213994-5214013 | None:intergenic | 60.0% | |
| ! | AAGTCGGGGCGGGTTCATGT+TGG | - | chr1_4:5213997-5214016 | Msa0145540:CDS | 60.0% |
| ! | CCCACTGATGGATGCCTCTG+TGG | + | chr1_4:5215456-5215475 | None:intergenic | 60.0% |
| CACGGACGCGGATGGGTATG+GGG | + | chr1_4:5213922-5213941 | None:intergenic | 65.0% | |
| GCACGGACGCGGATGGGTAT+GGG | + | chr1_4:5213923-5213942 | None:intergenic | 65.0% | |
| AGCACGGACGCGGATGGGTA+TGG | + | chr1_4:5213924-5213943 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5213159 | 5215810 | 5213159 | ID=Msa0145540;Name=Msa0145540 |
| chr1_4 | mRNA | 5213159 | 5215810 | 5213159 | ID=Msa0145540-mRNA-1;Parent=Msa0145540;Name=Msa0145540-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|292 |
| chr1_4 | exon | 5215706 | 5215810 | 5215706 | ID=Msa0145540-mRNA-1:exon:2191;Parent=Msa0145540-mRNA-1 |
| chr1_4 | exon | 5213872 | 5214445 | 5213872 | ID=Msa0145540-mRNA-1:exon:2190;Parent=Msa0145540-mRNA-1 |
| chr1_4 | exon | 5213395 | 5213510 | 5213395 | ID=Msa0145540-mRNA-1:exon:2189;Parent=Msa0145540-mRNA-1 |
| chr1_4 | exon | 5213159 | 5213242 | 5213159 | ID=Msa0145540-mRNA-1:exon:2188;Parent=Msa0145540-mRNA-1 |
| chr1_4 | CDS | 5215706 | 5215810 | 5215706 | ID=Msa0145540-mRNA-1:cds;Parent=Msa0145540-mRNA-1 |
| chr1_4 | CDS | 5213872 | 5214445 | 5213872 | ID=Msa0145540-mRNA-1:cds;Parent=Msa0145540-mRNA-1 |
| chr1_4 | CDS | 5213395 | 5213510 | 5213395 | ID=Msa0145540-mRNA-1:cds;Parent=Msa0145540-mRNA-1 |
| chr1_4 | CDS | 5213159 | 5213242 | 5213159 | ID=Msa0145540-mRNA-1:cds;Parent=Msa0145540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
