Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145550 | XP_003589274.2 | 95.597 | 477 | 20 | 1 | 5 | 480 | 2 | 478 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145550 | sp|Q8RYD1|REM16_ARATH | 33.784 | 296 | 182 | 7 | 172 | 457 | 11 | 302 | 8.03e-48 | 171 |
| Msa0145550 | sp|Q8RYD1|REM16_ARATH | 32.323 | 297 | 147 | 8 | 14 | 261 | 11 | 302 | 3.70e-33 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145550 | G7I4K8 | 95.597 | 477 | 20 | 1 | 5 | 480 | 2 | 478 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0145550 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145550 | MtrunA17_Chr1g0154131 | 95.597 | 477 | 20 | 1 | 5 | 480 | 2 | 478 | 0.0 | 943 |
| Msa0145550 | MtrunA17_Chr1g0154071 | 57.803 | 519 | 144 | 8 | 1 | 474 | 1 | 489 | 0.0 | 561 |
| Msa0145550 | MtrunA17_Chr1g0154101 | 76.452 | 310 | 69 | 2 | 1 | 309 | 1 | 307 | 7.69e-171 | 502 |
| Msa0145550 | MtrunA17_Chr1g0154101 | 60.825 | 194 | 37 | 4 | 318 | 474 | 413 | 604 | 9.25e-65 | 224 |
| Msa0145550 | MtrunA17_Chr1g0154101 | 31.692 | 325 | 188 | 8 | 183 | 474 | 506 | 829 | 4.82e-37 | 145 |
| Msa0145550 | MtrunA17_Chr1g0154211 | 64.439 | 374 | 63 | 7 | 170 | 474 | 7 | 379 | 1.00e-160 | 461 |
| Msa0145550 | MtrunA17_Chr1g0154211 | 75.155 | 161 | 40 | 0 | 9 | 169 | 4 | 164 | 3.05e-81 | 257 |
| Msa0145550 | MtrunA17_Chr1g0154111 | 62.323 | 353 | 85 | 8 | 170 | 474 | 10 | 362 | 3.80e-143 | 423 |
| Msa0145550 | MtrunA17_Chr1g0154111 | 73.810 | 168 | 42 | 2 | 4 | 170 | 2 | 168 | 1.44e-78 | 256 |
| Msa0145550 | MtrunA17_Chr1g0154111 | 53.476 | 187 | 48 | 5 | 199 | 348 | 368 | 552 | 3.52e-46 | 169 |
| Msa0145550 | MtrunA17_Chr1g0154111 | 55.039 | 129 | 39 | 2 | 42 | 170 | 368 | 477 | 3.25e-32 | 129 |
| Msa0145550 | MtrunA17_Chr1g0154171 | 61.671 | 347 | 97 | 5 | 170 | 480 | 7 | 353 | 6.79e-141 | 409 |
| Msa0145550 | MtrunA17_Chr1g0154171 | 69.136 | 162 | 44 | 1 | 9 | 170 | 4 | 159 | 5.18e-69 | 224 |
| Msa0145550 | MtrunA17_Chr1g0154191 | 57.778 | 360 | 102 | 8 | 170 | 480 | 6 | 364 | 4.04e-132 | 387 |
| Msa0145550 | MtrunA17_Chr1g0154191 | 70.988 | 162 | 46 | 1 | 10 | 170 | 4 | 165 | 5.98e-73 | 235 |
| Msa0145550 | MtrunA17_Chr1g0154161 | 58.559 | 333 | 87 | 5 | 170 | 480 | 14 | 317 | 5.11e-128 | 374 |
| Msa0145550 | MtrunA17_Chr1g0154161 | 45.455 | 308 | 131 | 7 | 1 | 273 | 1 | 306 | 5.86e-71 | 228 |
| Msa0145550 | MtrunA17_Chr1g0154151 | 55.340 | 309 | 107 | 6 | 199 | 480 | 19 | 323 | 1.74e-105 | 317 |
| Msa0145550 | MtrunA17_Chr1g0154151 | 64.341 | 129 | 35 | 1 | 42 | 170 | 19 | 136 | 1.68e-47 | 167 |
| Msa0145550 | MtrunA17_Chr1g0154241 | 58.403 | 238 | 46 | 5 | 166 | 351 | 2 | 238 | 1.63e-81 | 253 |
| Msa0145550 | MtrunA17_Chr1g0154241 | 75.641 | 156 | 38 | 0 | 11 | 166 | 5 | 160 | 2.35e-80 | 251 |
| Msa0145550 | MtrunA17_Chr1g0154251 | 42.487 | 386 | 121 | 12 | 170 | 457 | 11 | 393 | 6.20e-77 | 249 |
| Msa0145550 | MtrunA17_Chr1g0154251 | 66.292 | 178 | 50 | 3 | 1 | 171 | 3 | 177 | 6.41e-70 | 231 |
| Msa0145550 | MtrunA17_Chr1g0154041 | 44.023 | 343 | 138 | 9 | 182 | 474 | 15 | 353 | 1.52e-76 | 251 |
| Msa0145550 | MtrunA17_Chr1g0154041 | 29.878 | 328 | 194 | 8 | 183 | 474 | 255 | 582 | 1.44e-34 | 136 |
| Msa0145550 | MtrunA17_Chr1g0154041 | 34.653 | 101 | 65 | 1 | 28 | 128 | 16 | 115 | 1.04e-12 | 70.5 |
| Msa0145550 | MtrunA17_Chr1g0154121 | 66.234 | 77 | 24 | 1 | 400 | 474 | 2 | 78 | 1.61e-28 | 108 |
| Msa0145550 | MtrunA17_Chr7g0233561 | 29.710 | 276 | 172 | 6 | 198 | 459 | 32 | 299 | 3.49e-26 | 108 |
| Msa0145550 | MtrunA17_Chr3g0131891 | 27.653 | 311 | 190 | 11 | 184 | 476 | 17 | 310 | 8.07e-24 | 102 |
| Msa0145550 | MtrunA17_Chr6g0464121 | 63.014 | 73 | 26 | 1 | 403 | 474 | 122 | 194 | 4.80e-23 | 100 |
| Msa0145550 | MtrunA17_Chr7g0233531 | 27.612 | 268 | 167 | 6 | 200 | 459 | 2 | 250 | 1.12e-21 | 94.7 |
| Msa0145550 | MtrunA17_Chr7g0233541 | 27.431 | 288 | 188 | 8 | 200 | 474 | 2 | 281 | 1.34e-21 | 95.1 |
| Msa0145550 | MtrunA17_Chr3g0103181 | 25.263 | 285 | 195 | 6 | 184 | 468 | 10 | 276 | 9.25e-19 | 86.3 |
| Msa0145550 | MtrunA17_Chr3g0103171 | 25.540 | 278 | 177 | 7 | 200 | 468 | 6 | 262 | 3.54e-18 | 84.3 |
| Msa0145550 | MtrunA17_Chr1g0208771 | 24.910 | 277 | 181 | 6 | 200 | 460 | 13 | 278 | 4.73e-18 | 86.7 |
| Msa0145550 | MtrunA17_Chr7g0233521 | 25.000 | 280 | 188 | 8 | 200 | 474 | 2 | 264 | 9.66e-18 | 83.6 |
| Msa0145550 | MtrunA17_Chr4g0067431 | 25.077 | 323 | 171 | 12 | 195 | 476 | 26 | 318 | 1.67e-17 | 83.6 |
| Msa0145550 | MtrunA17_Chr3g0077461 | 29.104 | 268 | 127 | 11 | 195 | 459 | 248 | 455 | 2.82e-15 | 78.2 |
| Msa0145550 | MtrunA17_Chr8g0390841 | 23.824 | 319 | 201 | 12 | 183 | 476 | 36 | 337 | 1.06e-14 | 76.3 |
| Msa0145550 | MtrunA17_Chr1g0163221 | 26.370 | 292 | 174 | 11 | 184 | 458 | 9 | 276 | 2.10e-14 | 74.7 |
| Msa0145550 | MtrunA17_Chr7g0233571 | 37.000 | 100 | 60 | 1 | 179 | 278 | 8 | 104 | 1.65e-12 | 67.0 |
| Msa0145550 | MtrunA17_Chr3g0103201 | 25.207 | 242 | 138 | 9 | 242 | 468 | 4 | 217 | 2.44e-11 | 63.5 |
| Msa0145550 | MtrunA17_Chr1g0163181 | 24.910 | 277 | 184 | 7 | 195 | 459 | 16 | 280 | 2.54e-11 | 65.5 |
| Msa0145550 | MtrunA17_Chr5g0419201 | 27.612 | 134 | 92 | 2 | 195 | 328 | 27 | 155 | 3.33e-11 | 62.4 |
| Msa0145550 | MtrunA17_Chr1g0162441 | 39.241 | 79 | 48 | 0 | 196 | 274 | 19 | 97 | 4.65e-11 | 64.7 |
| Msa0145550 | MtrunA17_Chr4g0033961 | 38.202 | 89 | 55 | 0 | 185 | 273 | 7 | 95 | 7.97e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145550 | AT4G33280.1 | 33.784 | 296 | 182 | 7 | 172 | 457 | 11 | 302 | 8.16e-49 | 171 |
| Msa0145550 | AT4G33280.1 | 32.323 | 297 | 147 | 8 | 14 | 261 | 11 | 302 | 3.76e-34 | 131 |
| Msa0145550 | AT4G33280.2 | 46.951 | 164 | 86 | 1 | 172 | 334 | 11 | 174 | 2.20e-45 | 160 |
| Msa0145550 | AT4G33280.2 | 48.837 | 129 | 64 | 2 | 14 | 141 | 11 | 138 | 1.81e-34 | 131 |
| Msa0145550 | AT4G33280.3 | 46.951 | 164 | 86 | 1 | 172 | 334 | 11 | 174 | 6.26e-44 | 159 |
| Msa0145550 | AT4G33280.3 | 48.837 | 129 | 64 | 2 | 14 | 141 | 11 | 138 | 1.17e-33 | 131 |
| Msa0145550 | AT3G18990.2 | 24.069 | 349 | 195 | 9 | 183 | 475 | 5 | 339 | 7.04e-18 | 85.5 |
| Msa0145550 | AT3G18990.2 | 33.721 | 86 | 57 | 0 | 32 | 117 | 11 | 96 | 3.04e-11 | 65.5 |
| Msa0145550 | AT3G18990.1 | 24.269 | 342 | 189 | 9 | 183 | 468 | 5 | 332 | 8.55e-18 | 85.1 |
| Msa0145550 | AT3G18990.1 | 33.721 | 86 | 57 | 0 | 32 | 117 | 11 | 96 | 2.21e-11 | 65.5 |
| Msa0145550 | AT4G34400.2 | 35.644 | 101 | 62 | 1 | 183 | 283 | 17 | 114 | 2.64e-17 | 84.3 |
| Msa0145550 | AT4G34400.2 | 34.000 | 100 | 63 | 2 | 28 | 126 | 17 | 114 | 5.39e-15 | 77.0 |
| Msa0145550 | AT4G34400.1 | 35.644 | 101 | 62 | 1 | 183 | 283 | 17 | 114 | 2.64e-17 | 84.3 |
| Msa0145550 | AT4G34400.1 | 34.000 | 100 | 63 | 2 | 28 | 126 | 17 | 114 | 5.39e-15 | 77.0 |
| Msa0145550 | AT5G18090.1 | 22.789 | 294 | 207 | 10 | 186 | 470 | 19 | 301 | 3.83e-15 | 76.6 |
| Msa0145550 | AT5G18000.2 | 25.475 | 263 | 178 | 8 | 216 | 470 | 19 | 271 | 4.07e-15 | 75.9 |
| Msa0145550 | AT5G18000.1 | 25.475 | 263 | 178 | 8 | 216 | 470 | 54 | 306 | 6.96e-15 | 75.9 |
| Msa0145550 | AT5G66980.1 | 25.497 | 302 | 184 | 10 | 186 | 459 | 11 | 299 | 2.48e-14 | 74.3 |
| Msa0145550 | AT3G06220.1 | 31.818 | 88 | 60 | 0 | 186 | 273 | 11 | 98 | 4.63e-14 | 70.9 |
| Msa0145550 | AT3G06220.1 | 28.319 | 113 | 72 | 3 | 28 | 140 | 11 | 114 | 1.52e-11 | 63.5 |
| Msa0145550 | AT5G60130.5 | 38.614 | 101 | 57 | 2 | 186 | 281 | 15 | 115 | 1.21e-13 | 71.2 |
| Msa0145550 | AT5G60130.2 | 38.614 | 101 | 57 | 2 | 186 | 281 | 15 | 115 | 2.45e-13 | 71.2 |
| Msa0145550 | AT5G60130.1 | 38.614 | 101 | 57 | 2 | 186 | 281 | 15 | 115 | 3.21e-13 | 71.2 |
| Msa0145550 | AT5G60130.4 | 38.614 | 101 | 57 | 2 | 186 | 281 | 12 | 112 | 3.37e-13 | 70.9 |
| Msa0145550 | AT5G60130.3 | 41.573 | 89 | 47 | 2 | 198 | 281 | 1 | 89 | 7.27e-13 | 69.7 |
| Msa0145550 | AT3G06160.1 | 32.955 | 88 | 59 | 0 | 186 | 273 | 26 | 113 | 8.06e-13 | 69.7 |
| Msa0145550 | AT3G06160.1 | 28.467 | 137 | 86 | 4 | 28 | 164 | 26 | 150 | 7.52e-11 | 63.9 |
| Msa0145550 | AT3G06160.5 | 32.955 | 88 | 59 | 0 | 186 | 273 | 11 | 98 | 8.61e-13 | 69.7 |
| Msa0145550 | AT3G06160.5 | 28.467 | 137 | 86 | 4 | 28 | 164 | 11 | 135 | 6.47e-11 | 63.9 |
| Msa0145550 | AT3G06160.4 | 32.955 | 88 | 59 | 0 | 186 | 273 | 11 | 98 | 8.61e-13 | 69.7 |
| Msa0145550 | AT3G06160.4 | 28.467 | 137 | 86 | 4 | 28 | 164 | 11 | 135 | 6.47e-11 | 63.9 |
| Msa0145550 | AT3G06160.3 | 32.955 | 88 | 59 | 0 | 186 | 273 | 11 | 98 | 8.61e-13 | 69.7 |
| Msa0145550 | AT3G06160.3 | 28.467 | 137 | 86 | 4 | 28 | 164 | 11 | 135 | 6.47e-11 | 63.9 |
| Msa0145550 | AT3G06160.2 | 32.955 | 88 | 59 | 0 | 186 | 273 | 70 | 157 | 1.41e-12 | 69.7 |
| Msa0145550 | AT3G06160.2 | 28.467 | 137 | 86 | 4 | 28 | 164 | 70 | 194 | 8.83e-11 | 63.9 |
| Msa0145550 | AT3G53310.1 | 34.831 | 89 | 58 | 0 | 186 | 274 | 12 | 100 | 1.32e-11 | 65.9 |
| Msa0145550 | AT3G53310.1 | 32.609 | 92 | 62 | 0 | 25 | 116 | 8 | 99 | 4.37e-11 | 64.3 |
| Msa0145550 | AT5G60140.1 | 31.481 | 108 | 71 | 1 | 177 | 281 | 7 | 114 | 3.02e-11 | 65.1 |
Find 104 sgRNAs with CRISPR-Local
Find 441 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCGGTGCTAAGAAAT+TGG | 0.174549 | 1_4:+5226522 | None:intergenic |
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 1_4:+5225809 | None:intergenic |
| AAACTCCACTAGGACCTTTA+AGG | 0.192051 | 1_4:+5226903 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_4:-5225823 | Msa0145550:CDS |
| CCAGCAAATGTGACCCTTAA+AGG | 0.268883 | 1_4:-5226917 | Msa0145550:CDS |
| AATGGGTGGTTTGAAGAAAT+TGG | 0.273959 | 1_4:+5228164 | None:intergenic |
| TGTTTCCCCTGAGCAGTTCA+TGG | 0.291888 | 1_4:-5225536 | Msa0145550:CDS |
| TCACAAGAATTACCTGCTTT+TGG | 0.303020 | 1_4:+5225421 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.303419 | 1_4:-5225796 | Msa0145550:CDS |
| CCTTTAAGGGTCACATTTGC+TGG | 0.308416 | 1_4:+5226917 | None:intergenic |
| TGTCGATGGTCCACGTATTC+TGG | 0.310730 | 1_4:-5223248 | Msa0145550:intron |
| TTCATTAACAGGCCTCTTCT+TGG | 0.313583 | 1_4:+5225477 | None:intergenic |
| ATTGGGCGAAATGGATGAAT+TGG | 0.319343 | 1_4:+5226540 | None:intergenic |
| AAGTTGGAAAAGATGATTCT+AGG | 0.330396 | 1_4:-5222100 | Msa0145550:CDS |
| ATTGGGTGAAACGGATGAAT+TGG | 0.330681 | 1_4:+5228182 | None:intergenic |
| CTTGGGAGGAAGACATTTAC+TGG | 0.335828 | 1_4:-5228213 | Msa0145550:CDS |
| GTCGTCTTCCTCGCTTAGTC+TGG | 0.342526 | 1_4:+5225443 | None:intergenic |
| CATGGGAGGAAGACATTTAC+TGG | 0.353390 | 1_4:-5226571 | Msa0145550:CDS |
| TCCCAAGACCTGCTGTTGTT+TGG | 0.371197 | 1_4:+5228229 | None:intergenic |
| CGAAATGGATGAATTGGAAA+TGG | 0.383704 | 1_4:+5226546 | None:intergenic |
| ATAATCTTTATCTTGCGGTT+TGG | 0.389622 | 1_4:+5222302 | None:intergenic |
| ATTTCTTCAAACCACCCATT+TGG | 0.389978 | 1_4:-5228161 | Msa0145550:CDS |
| GTGGAGTTGTGTGGAATATA+GGG | 0.394948 | 1_4:-5225795 | Msa0145550:CDS |
| TGCTAAGAAATTGGGCGAAA+TGG | 0.399475 | 1_4:+5226531 | None:intergenic |
| TTACAAGTTGTTGTTCCAAA+TGG | 0.406373 | 1_4:+5228146 | None:intergenic |
| CGTGTTCGCGTCGCTGAAGT+TGG | 0.409303 | 1_4:-5222116 | Msa0145550:CDS |
| CATTCAACACTGCCATTAGA+AGG | 0.411659 | 1_4:+5226611 | None:intergenic |
| GAAGATGTGCCTTTGAGAAT+TGG | 0.415199 | 1_4:+5222324 | None:intergenic |
| ACAGGCGTAACTTCATTAAC+AGG | 0.421710 | 1_4:+5225466 | None:intergenic |
| AACAAGTTGCTGTTCAAAAT+CGG | 0.433766 | 1_4:+5226508 | None:intergenic |
| GAAGTCAATACTCCTTCTAA+TGG | 0.437631 | 1_4:-5226623 | Msa0145550:CDS |
| CAATGGTGAATCACTCTTTG+AGG | 0.437853 | 1_4:-5226768 | Msa0145550:CDS |
| AGATGACACTGTTTACTTTG+TGG | 0.439617 | 1_4:-5225761 | Msa0145550:CDS |
| TACAAGTTGTTGTTCCAAAT+GGG | 0.455785 | 1_4:+5228147 | None:intergenic |
| CACCAAACAACAGCAGGTCT+TGG | 0.456135 | 1_4:-5228231 | Msa0145550:CDS |
| TTTAACAAAATAAGGAAAAG+AGG | 0.464646 | 1_4:+5223288 | None:intergenic |
| AAAATCGGTGCTAAGAAATT+GGG | 0.464992 | 1_4:+5226523 | None:intergenic |
| TGAAACGGATGAATTGGAAA+TGG | 0.465797 | 1_4:+5228188 | None:intergenic |
| GCATCAGCCATGAACTGCTC+AGG | 0.467203 | 1_4:+5225529 | None:intergenic |
| TGGAAAAGATGATTCTAGGT+TGG | 0.468489 | 1_4:-5222096 | Msa0145550:CDS |
| AAAAGAGGAGGTAAATGATT+CGG | 0.471467 | 1_4:+5223303 | None:intergenic |
| CCTCCCAAACAAACGGCAAA+AGG | 0.472266 | 1_4:-5225501 | Msa0145550:CDS |
| CTGTTTACTTTGTGGACGGT+TGG | 0.473892 | 1_4:-5225753 | Msa0145550:CDS |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 1_4:+5225810 | None:intergenic |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 1_4:+5226904 | None:intergenic |
| CAACGGTAAATCACTCTTTG+AGG | 0.482140 | 1_4:-5225674 | Msa0145550:CDS |
| CGTGGAAACAACATAAAAGT+TGG | 0.487501 | 1_4:-5222179 | Msa0145550:CDS |
| ACCAAACAACAGCAGGTCTT+GGG | 0.497486 | 1_4:-5228230 | Msa0145550:CDS |
| CTTCCTCGCTTAGTCTGGAC+AGG | 0.500517 | 1_4:+5225448 | None:intergenic |
| GATTATTCTTCATAATTTGA+AGG | 0.504582 | 1_4:-5222285 | Msa0145550:CDS |
| ATTCAAATGGGAGGAGGAGG+AGG | 0.510297 | 1_4:-5228256 | None:intergenic |
| ATTATTCTTCATAATTTGAA+GGG | 0.512712 | 1_4:-5222284 | Msa0145550:CDS |
| ATGGGTGGTTTGAAGAAATT+GGG | 0.514803 | 1_4:+5228165 | None:intergenic |
| GAAACGGATGAATTGGAAAT+GGG | 0.527388 | 1_4:+5228189 | None:intergenic |
| GAAGAATAATCTTTATCTTG+CGG | 0.531188 | 1_4:+5222297 | None:intergenic |
| GGGAATGCTCCAACCGAACA+AGG | 0.531697 | 1_4:-5225589 | Msa0145550:CDS |
| ATCACACTCTATGTGGAGGA+TGG | 0.534155 | 1_4:-5222214 | Msa0145550:CDS |
| GAAATGGATGAATTGGAAAT+GGG | 0.535378 | 1_4:+5226547 | None:intergenic |
| GCGGTTCCCTCCCAAACAAA+CGG | 0.536582 | 1_4:-5225508 | Msa0145550:CDS |
| TCTGTATTCACTCTAGTCGT+TGG | 0.546802 | 1_4:+5222236 | None:intergenic |
| TGGAGATAGTTTCTGTGAGA+AGG | 0.547709 | 1_4:-5225638 | Msa0145550:CDS |
| TTAATTCAAATGGGAGGAGG+AGG | 0.550035 | 1_4:-5228259 | None:intergenic |
| CACCATTGTACTTGACGACA+AGG | 0.556385 | 1_4:+5226783 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+CGG | 0.560047 | 1_4:-5225691 | Msa0145550:CDS |
| ATCAAAACGTTCAATGTCGA+TGG | 0.563766 | 1_4:-5223262 | Msa0145550:CDS |
| CGAGGAAGACGACCAAAAGC+AGG | 0.564365 | 1_4:-5225433 | Msa0145550:intron |
| ATAATTTGAAGGGAGAACAA+TGG | 0.564369 | 1_4:-5222274 | Msa0145550:CDS |
| CATCAGCCATGAACTGCTCA+GGG | 0.564547 | 1_4:+5225530 | None:intergenic |
| TTTGAAGAAATTGGGTGAAA+CGG | 0.566255 | 1_4:+5228173 | None:intergenic |
| GGACAAGCTCATACTGAACA+AGG | 0.566815 | 1_4:-5226683 | Msa0145550:CDS |
| GAGGAACACCAAACAACAGC+AGG | 0.571039 | 1_4:-5228237 | Msa0145550:CDS |
| TACCGTTGTACTTAAAGACA+AGG | 0.571756 | 1_4:+5225689 | None:intergenic |
| GATGTGCCTTTGAGAATTGG+TGG | 0.577072 | 1_4:+5222327 | None:intergenic |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1_4:+5225799 | None:intergenic |
| TCACACTCTATGTGGAGGAT+GGG | 0.578428 | 1_4:-5222213 | Msa0145550:CDS |
| CAGTTTACGCAACGAATGGT+TGG | 0.580667 | 1_4:-5226847 | Msa0145550:CDS |
| AAGTTGTTGTTCCAAATGGG+TGG | 0.583718 | 1_4:+5228150 | None:intergenic |
| TTCCTTGTCGTCAAGTACAA+TGG | 0.585995 | 1_4:-5226785 | Msa0145550:CDS |
| GATACAGTTTACGCAACGAA+TGG | 0.593716 | 1_4:-5226851 | Msa0145550:CDS |
| GTGTTAATTCAAATGGGAGG+AGG | 0.594747 | 1_4:-5228262 | None:intergenic |
| ATATCCCACAAAACTCCACT+AGG | 0.596255 | 1_4:+5226893 | None:intergenic |
| AATACAGATCACACTCTATG+TGG | 0.602462 | 1_4:-5222221 | Msa0145550:CDS |
| GACACTGTTTACTTTGTGGA+CGG | 0.610411 | 1_4:-5225757 | Msa0145550:CDS |
| GGAATGCTCCAACCGAACAA+GGG | 0.613217 | 1_4:-5225588 | Msa0145550:CDS |
| ACGGCAAAAGGACCAAGAAG+AGG | 0.615875 | 1_4:-5225489 | Msa0145550:CDS |
| AACAAAATAAGGAAAAGAGG+AGG | 0.617290 | 1_4:+5223291 | None:intergenic |
| ATGTGCCTTTGAGAATTGGT+GGG | 0.621597 | 1_4:+5222328 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_4:-5225804 | Msa0145550:CDS |
| AAACAACAGCAGGTCTTGGG+AGG | 0.625716 | 1_4:-5228227 | Msa0145550:CDS |
| TGAGCAGTTCATGGCTGATG+CGG | 0.629723 | 1_4:-5225527 | Msa0145550:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_4:-5225814 | Msa0145550:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_4:-5226908 | Msa0145550:CDS |
| ACAAGCTCATACTGAACAAG+GGG | 0.635406 | 1_4:-5226681 | Msa0145550:CDS |
| ACTGTGTTAATTCAAATGGG+AGG | 0.636224 | 1_4:-5228265 | None:intergenic |
| TCTAATGGCAGTGTTGAATG+CGG | 0.636629 | 1_4:-5226608 | Msa0145550:CDS |
| GAATGCTCCAACCGAACAAG+GGG | 0.636718 | 1_4:-5225587 | Msa0145550:CDS |
| ACGCCTGTCCAGACTAAGCG+AGG | 0.652299 | 1_4:-5225451 | Msa0145550:CDS |
| GACAAGCTCATACTGAACAA+GGG | 0.656331 | 1_4:-5226682 | Msa0145550:CDS |
| ACAGATCACACTCTATGTGG+AGG | 0.665620 | 1_4:-5222218 | Msa0145550:CDS |
| TGTACCCCACCAATTCTCAA+AGG | 0.668923 | 1_4:-5222333 | Msa0145550:CDS |
| TGTGCCTTTGAGAATTGGTG+GGG | 0.697237 | 1_4:+5222329 | None:intergenic |
| ATCAGCCATGAACTGCTCAG+GGG | 0.743763 | 1_4:+5225531 | None:intergenic |
| AATGCTCCAACCGAACAAGG+GGG | 0.772446 | 1_4:-5225586 | Msa0145550:CDS |
| CAAGCTCATACTGAACAAGG+GGG | 0.797539 | 1_4:-5226680 | Msa0145550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACAAAATTTAAAAAGT+GGG | + | chr1_4:5222327-5222346 | None:intergenic | 10.0% |
| !! | AATATACAAAATTTAAAAAG+TGG | + | chr1_4:5222328-5222347 | None:intergenic | 10.0% |
| !! | AGTTAAAATAATAAAGAAAA+AGG | + | chr1_4:5223950-5223969 | None:intergenic | 10.0% |
| !!! | GAAATTTATATTTTAATTTC+AGG | - | chr1_4:5224451-5224470 | Msa0145550:intron | 10.0% |
| !! | ATTAATATAGTAAAAGTTAA+TGG | + | chr1_4:5225002-5225021 | None:intergenic | 10.0% |
| !! | TTAAATAAAATAATAAGCTT+TGG | + | chr1_4:5226935-5226954 | None:intergenic | 10.0% |
| !! | TAGATAAAAAATTTAAAAGC+TGG | + | chr1_4:5223976-5223995 | None:intergenic | 15.0% |
| !!! | TTGTGTTTGTTTTTAAATAA+TGG | - | chr1_4:5224048-5224067 | Msa0145550:intron | 15.0% |
| !! | ATTGATTAAAGGAAAATAAA+AGG | - | chr1_4:5224198-5224217 | Msa0145550:intron | 15.0% |
| !! | TATATTAATTCTGAACTATT+TGG | - | chr1_4:5225013-5225032 | Msa0145550:intron | 15.0% |
| !! | GAAATTCATATATAATGTAT+CGG | - | chr1_4:5225393-5225412 | Msa0145550:intron | 15.0% |
| !!! | TTGATCATTTTAACAAAATA+AGG | + | chr1_4:5227061-5227080 | None:intergenic | 15.0% |
| !! | AAAATAGGAAATATTAAAGA+AGG | + | chr1_4:5227874-5227893 | None:intergenic | 15.0% |
| !!! | ATTTCCTATTTTAAGATTAT+TGG | - | chr1_4:5227882-5227901 | Msa0145550:intron | 15.0% |
| !! | ATTATTCTTCATAATTTGAA+GGG | - | chr1_4:5228054-5228073 | Msa0145550:intron | 15.0% |
| !! | AAGAATTAATTGCAGTTAAA+TGG | + | chr1_4:5222359-5222378 | None:intergenic | 20.0% |
| !!! | TACATAATTTTTGCAGAATA+AGG | + | chr1_4:5222541-5222560 | None:intergenic | 20.0% |
| !! | CTAAGATTGTTTATTTAGTT+CGG | + | chr1_4:5223004-5223023 | None:intergenic | 20.0% |
| !!! | GAAATTTATACTTTTATTGC+AGG | - | chr1_4:5223357-5223376 | Msa0145550:intron | 20.0% |
| !! | CATTTAAGTAGATTGATTAA+AGG | - | chr1_4:5224187-5224206 | Msa0145550:intron | 20.0% |
| !! | AAAATAAAAGGAAGTGAATA+AGG | - | chr1_4:5224210-5224229 | Msa0145550:intron | 20.0% |
| !!! | AAATAATTATGTTTTGCTCT+TGG | - | chr1_4:5224260-5224279 | Msa0145550:intron | 20.0% |
| !!! | TATTTATGTAATTTGTGAAC+TGG | - | chr1_4:5224314-5224333 | Msa0145550:intron | 20.0% |
| !! | ATTAGATGTTCTTATCAATT+GGG | + | chr1_4:5225219-5225238 | None:intergenic | 20.0% |
| !! | ATACAAATTTGACAAAAAAG+TGG | + | chr1_4:5225318-5225337 | None:intergenic | 20.0% |
| !!! | TTCTTTTGTCATTTGATTTA+TGG | - | chr1_4:5225350-5225369 | Msa0145550:intron | 20.0% |
| !!! | TCACATGTTTTTACTTAAAA+AGG | - | chr1_4:5225433-5225452 | Msa0145550:intron | 20.0% |
| !! | CACATTTCATTTGTAATTAT+AGG | - | chr1_4:5225756-5225775 | Msa0145550:CDS | 20.0% |
| !! | TTTCCTTTAATAAATGTGAT+AGG | - | chr1_4:5226025-5226044 | Msa0145550:intron | 20.0% |
| !!! | TCTATTTTACAATTTCTACT+GGG | + | chr1_4:5226597-5226616 | None:intergenic | 20.0% |
| !!! | TTCTATTTTACAATTTCTAC+TGG | + | chr1_4:5226598-5226617 | None:intergenic | 20.0% |
| !!! | AATTGCCTTTGATTTTATTT+TGG | - | chr1_4:5226813-5226832 | Msa0145550:CDS | 20.0% |
| !!! | ATTGCCTTTGATTTTATTTT+GGG | - | chr1_4:5226814-5226833 | Msa0145550:CDS | 20.0% |
| !! | TTTAACAAAATAAGGAAAAG+AGG | + | chr1_4:5227053-5227072 | None:intergenic | 20.0% |
| !! | GGAAAATTATGAATTACAAA+AGG | + | chr1_4:5227126-5227145 | None:intergenic | 20.0% |
| !! | TAAAAGGAGAAATACTAAAA+GGG | + | chr1_4:5227450-5227469 | None:intergenic | 20.0% |
| !! | ATAAAAGGAGAAATACTAAA+AGG | + | chr1_4:5227451-5227470 | None:intergenic | 20.0% |
| !! | GATTATTCTTCATAATTTGA+AGG | - | chr1_4:5228053-5228072 | Msa0145550:intron | 20.0% |
| ! | CAATACAAACTCAAAACAAA+GGG | + | chr1_4:5222434-5222453 | None:intergenic | 25.0% |
| ! | CTCTTTATCTTGTATGTATT+TGG | - | chr1_4:5223042-5223061 | Msa0145550:intron | 25.0% |
| !!! | TTTTGATTTGTATTACCCAT+AGG | - | chr1_4:5223073-5223092 | Msa0145550:intron | 25.0% |
| !! | AATAATTATGCTTAGCTCTT+AGG | - | chr1_4:5223273-5223292 | Msa0145550:CDS | 25.0% |
| !! | AAATTGCCTGAAAATGTTTT+AGG | + | chr1_4:5223388-5223407 | None:intergenic | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTCA+TGG | - | chr1_4:5223586-5223605 | Msa0145550:intron | 25.0% |
| !! | TCATATTTTATTCTTGAACG+TGG | - | chr1_4:5223634-5223653 | Msa0145550:intron | 25.0% |
| ! | AAAAAGGAAACAAGAATGAA+GGG | + | chr1_4:5223862-5223881 | None:intergenic | 25.0% |
| ! | ATTAACTGCAGTTAAAGAAA+TGG | + | chr1_4:5224003-5224022 | None:intergenic | 25.0% |
| ! | ATAAATAGTGTTTGCAGAAT+TGG | + | chr1_4:5224301-5224320 | None:intergenic | 25.0% |
| !! | ATGTATCTTTTAATCTCAGA+TGG | - | chr1_4:5224429-5224448 | Msa0145550:intron | 25.0% |
| !! | AAATTGTCTGAGAATGTTTT+AGG | + | chr1_4:5224482-5224501 | None:intergenic | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | - | chr1_4:5224680-5224699 | Msa0145550:intron | 25.0% |
| !!! | TCTTATTTTGTTGGAAAATG+TGG | - | chr1_4:5224728-5224747 | Msa0145550:intron | 25.0% |
| !!! | CTTATTTTGTTGGAAAATGT+GGG | - | chr1_4:5224729-5224748 | Msa0145550:intron | 25.0% |
| ! | AATAAAACTTTCTGATGTCA+TGG | - | chr1_4:5225038-5225057 | Msa0145550:intron | 25.0% |
| !!! | GTTTTTTCCGCTTTTTAAAA+TGG | - | chr1_4:5225139-5225158 | Msa0145550:intron | 25.0% |
| ! | CATTAGATGTTCTTATCAAT+TGG | + | chr1_4:5225220-5225239 | None:intergenic | 25.0% |
| ! | ATCAAATGACAAAAGAAAAG+TGG | + | chr1_4:5225347-5225366 | None:intergenic | 25.0% |
| !!! | AGAAGAATCATTGTTTTGTT+TGG | - | chr1_4:5225661-5225680 | Msa0145550:CDS | 25.0% |
| ! | TTGTAGGTTTGCAATAAATT+TGG | - | chr1_4:5225856-5225875 | Msa0145550:CDS | 25.0% |
| ! | ATTTCCATGATTAGAAGATT+TGG | + | chr1_4:5226262-5226281 | None:intergenic | 25.0% |
| ! | AAATCTTCTAATCATGGAAA+TGG | - | chr1_4:5226261-5226280 | Msa0145550:intron | 25.0% |
| ! | AATTGCAATATTGTTCAAGA+AGG | - | chr1_4:5226650-5226669 | Msa0145550:CDS | 25.0% |
| ! | TAGACCCAAAATAAAATCAA+AGG | + | chr1_4:5226821-5226840 | None:intergenic | 25.0% |
| !! | TAAGCTTTGGCATAAATATA+AGG | + | chr1_4:5226922-5226941 | None:intergenic | 25.0% |
| ! | ATAAAACAACATTATTTGGG+AGG | + | chr1_4:5227147-5227166 | None:intergenic | 25.0% |
| ! | GGGATAAAACAACATTATTT+GGG | + | chr1_4:5227150-5227169 | None:intergenic | 25.0% |
| ! | AGGGATAAAACAACATTATT+TGG | + | chr1_4:5227151-5227170 | None:intergenic | 25.0% |
| ! | GACAAGATAACAATAACAAT+TGG | + | chr1_4:5227800-5227819 | None:intergenic | 25.0% |
| ! | ACGACCAATAATCTTAAAAT+AGG | + | chr1_4:5227889-5227908 | None:intergenic | 25.0% |
| ! | GAAGAATAATCTTTATCTTG+CGG | + | chr1_4:5228044-5228063 | None:intergenic | 25.0% |
| TTTGAAGAAATTGGGTGAAA+CGG | + | chr1_4:5222168-5222187 | None:intergenic | 30.0% | |
| ! | TACAAGTTGTTGTTCCAAAT+GGG | + | chr1_4:5222194-5222213 | None:intergenic | 30.0% |
| ! | TTACAAGTTGTTGTTCCAAA+TGG | + | chr1_4:5222195-5222214 | None:intergenic | 30.0% |
| ! | AGTATCCTTTTCTTTCTAAG+CGG | - | chr1_4:5222214-5222233 | Msa0145550:CDS | 30.0% |
| TTTCTAAGCGGTTCATATTT+GGG | - | chr1_4:5222226-5222245 | Msa0145550:CDS | 30.0% | |
| GCAATACAAACTCAAAACAA+AGG | + | chr1_4:5222435-5222454 | None:intergenic | 30.0% | |
| GCAAAAGAATCATGCTAAAA+AGG | - | chr1_4:5222453-5222472 | Msa0145550:intron | 30.0% | |
| GAAAGTGAAAAAAGAGATTG+TGG | - | chr1_4:5222485-5222504 | Msa0145550:intron | 30.0% | |
| AAAAAAGAGATTGTGGTGTA+AGG | - | chr1_4:5222492-5222511 | Msa0145550:intron | 30.0% | |
| AAAAAGAGATTGTGGTGTAA+GGG | - | chr1_4:5222493-5222512 | Msa0145550:intron | 30.0% | |
| ATACAAGATAAAGAGAGAAG+AGG | + | chr1_4:5223037-5223056 | None:intergenic | 30.0% | |
| ! | AGAACAAATCTAGAACCTAT+GGG | + | chr1_4:5223091-5223110 | None:intergenic | 30.0% |
| ! | AAGAACAAATCTAGAACCTA+TGG | + | chr1_4:5223092-5223111 | None:intergenic | 30.0% |
| !! | ATAGGTTCTAGATTTGTTCT+TGG | - | chr1_4:5223091-5223110 | Msa0145550:intron | 30.0% |
| !! | TTGCTTAAGCTGTTTAGTTT+TGG | - | chr1_4:5223126-5223145 | Msa0145550:intron | 30.0% |
| !!! | TCATTGGTTTTTACAACAAG+TGG | - | chr1_4:5223161-5223180 | Msa0145550:intron | 30.0% |
| AAACCATAAAGCATGTACTT+GGG | - | chr1_4:5223193-5223212 | Msa0145550:intron | 30.0% | |
| CAATGTTTCATAGTCTCAAA+TGG | - | chr1_4:5223335-5223354 | Msa0145550:CDS | 30.0% | |
| GAAATGGATGAATTGGAAAT+GGG | + | chr1_4:5223794-5223813 | None:intergenic | 30.0% | |
| !! | AAAATCGGTGCTAAGAAATT+GGG | + | chr1_4:5223818-5223837 | None:intergenic | 30.0% |
| ! | AACAAGTTGCTGTTCAAAAT+CGG | + | chr1_4:5223833-5223852 | None:intergenic | 30.0% |
| GAAAAAGGAAACAAGAATGA+AGG | + | chr1_4:5223863-5223882 | None:intergenic | 30.0% | |
| ! | TTTCCTTTTTCTCTTTTCCT+TGG | - | chr1_4:5223872-5223891 | Msa0145550:intron | 30.0% |
| ! | TTCCTTTTTCTCTTTTCCTT+GGG | - | chr1_4:5223873-5223892 | Msa0145550:intron | 30.0% |
| TCAAAAGCAAACACTAGAAA+GGG | + | chr1_4:5224120-5224139 | None:intergenic | 30.0% | |
| TCTACTTAAATGTAGATGCA+TGG | + | chr1_4:5224179-5224198 | None:intergenic | 30.0% | |
| !!! | TTGATTAGTAGCTGTTTTTC+AGG | - | chr1_4:5224236-5224255 | Msa0145550:intron | 30.0% |
| ATATTCTACCAATATCTCGT+AGG | - | chr1_4:5224394-5224413 | Msa0145550:intron | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+CGG | - | chr1_4:5224647-5224666 | Msa0145550:intron | 30.0% | |
| !! | CTTAGGACCATTTTAAAAAG+CGG | + | chr1_4:5225149-5225168 | None:intergenic | 30.0% |
| ACATCTAATGTGTGTCTATT+TGG | - | chr1_4:5225230-5225249 | Msa0145550:intron | 30.0% | |
| TTTGGATATGTATCTCATCT+TGG | - | chr1_4:5225248-5225267 | Msa0145550:intron | 30.0% | |
| AATGACAAAAGAAAAGTGGT+TGG | + | chr1_4:5225343-5225362 | None:intergenic | 30.0% | |
| TTAACTTTAGCAGATGACTT+GGG | - | chr1_4:5225475-5225494 | Msa0145550:CDS | 30.0% | |
| AAGGGAATAAACTCAAAGTA+TGG | - | chr1_4:5225509-5225528 | Msa0145550:CDS | 30.0% | |
| AAGTATGGAGATTTCATGTA+AGG | - | chr1_4:5225524-5225543 | Msa0145550:CDS | 30.0% | |
| ! | ATTTGGGATTTGGTTATATG+AGG | - | chr1_4:5225608-5225627 | Msa0145550:CDS | 30.0% |
| ! | TTTCTTGTGATTTTGCTCAA+TGG | - | chr1_4:5225898-5225917 | Msa0145550:intron | 30.0% |
| ! | TTCTTGTGATTTTGCTCAAT+GGG | - | chr1_4:5225899-5225918 | Msa0145550:intron | 30.0% |
| AACACATATTGATCTCTCAA+AGG | + | chr1_4:5225985-5226004 | None:intergenic | 30.0% | |
| GGTCCTATCACATTTATTAA+AGG | + | chr1_4:5226031-5226050 | None:intergenic | 30.0% | |
| TGTTCCAAATCTTCTAATCA+TGG | - | chr1_4:5226255-5226274 | Msa0145550:intron | 30.0% | |
| TTTCACGTTAAAGATCCTAT+TGG | + | chr1_4:5226368-5226387 | None:intergenic | 30.0% | |
| !!! | GTTTTTGAGTCTCTATCAAT+TGG | + | chr1_4:5226463-5226482 | None:intergenic | 30.0% |
| ACAGACAACTGAAGATAAAA+AGG | - | chr1_4:5226619-5226638 | Msa0145550:CDS | 30.0% | |
| TTAGAAGATAAGCAAAGTCA+AGG | + | chr1_4:5226787-5226806 | None:intergenic | 30.0% | |
| AAAAGAGGAGGTAAATGATT+CGG | + | chr1_4:5227038-5227057 | None:intergenic | 30.0% | |
| AACAAAATAAGGAAAAGAGG+AGG | + | chr1_4:5227050-5227069 | None:intergenic | 30.0% | |
| ! | ACAGTATTTCTCCTTTTATG+AGG | - | chr1_4:5227254-5227273 | Msa0145550:intron | 30.0% |
| ! | CAGTATTTCTCCTTTTATGA+GGG | - | chr1_4:5227255-5227274 | Msa0145550:intron | 30.0% |
| ! | AGTATTTCTCCTTTTATGAG+GGG | - | chr1_4:5227256-5227275 | Msa0145550:intron | 30.0% |
| ! | AGTATTTCTCCTTTTATGTG+TGG | - | chr1_4:5227454-5227473 | Msa0145550:intron | 30.0% |
| !!! | TCACTGAGATCATTTTTTAC+TGG | + | chr1_4:5227566-5227585 | None:intergenic | 30.0% |
| ! | CCAAGATTGACTCATTAATT+AGG | + | chr1_4:5227622-5227641 | None:intergenic | 30.0% |
| CCTAATTAATGAGTCAATCT+TGG | - | chr1_4:5227619-5227638 | Msa0145550:intron | 30.0% | |
| ACTTGCACTTCAATGAATAT+TGG | - | chr1_4:5227662-5227681 | Msa0145550:intron | 30.0% | |
| CAATAACAATTGGTACTTCT+TGG | + | chr1_4:5227790-5227809 | None:intergenic | 30.0% | |
| AACAAGAGCTTCAATGTTAA+TGG | + | chr1_4:5227954-5227973 | None:intergenic | 30.0% | |
| ATAATCTTTATCTTGCGGTT+TGG | + | chr1_4:5228039-5228058 | None:intergenic | 30.0% | |
| ATAATTTGAAGGGAGAACAA+TGG | - | chr1_4:5228064-5228083 | Msa0145550:intron | 30.0% | |
| AAGTTGGAAAAGATGATTCT+AGG | - | chr1_4:5228238-5228257 | Msa0145550:CDS | 30.0% | |
| GAAACGGATGAATTGGAAAT+GGG | + | chr1_4:5222152-5222171 | None:intergenic | 35.0% | |
| TGAAACGGATGAATTGGAAA+TGG | + | chr1_4:5222153-5222172 | None:intergenic | 35.0% | |
| ATGGGTGGTTTGAAGAAATT+GGG | + | chr1_4:5222176-5222195 | None:intergenic | 35.0% | |
| AATGGGTGGTTTGAAGAAAT+TGG | + | chr1_4:5222177-5222196 | None:intergenic | 35.0% | |
| ATTTCTTCAAACCACCCATT+TGG | - | chr1_4:5222177-5222196 | Msa0145550:CDS | 35.0% | |
| ATGAACCGCTTAGAAAGAAA+AGG | + | chr1_4:5222222-5222241 | None:intergenic | 35.0% | |
| CTTTCTAAGCGGTTCATATT+TGG | - | chr1_4:5222225-5222244 | Msa0145550:CDS | 35.0% | |
| TTCTAAGCGGTTCATATTTG+GGG | - | chr1_4:5222227-5222246 | Msa0145550:CDS | 35.0% | |
| AGTGCCTTCAAATTAGTATC+TGG | - | chr1_4:5222573-5222592 | Msa0145550:intron | 35.0% | |
| GTGCCTTCAAATTAGTATCT+GGG | - | chr1_4:5222574-5222593 | Msa0145550:intron | 35.0% | |
| ATGCCCAGATACTAATTTGA+AGG | + | chr1_4:5222580-5222599 | None:intergenic | 35.0% | |
| CAAGAGTAAGAACCAAAAGA+GGG | - | chr1_4:5222801-5222820 | Msa0145550:intron | 35.0% | |
| AAGAGTAAGAACCAAAAGAG+GGG | - | chr1_4:5222802-5222821 | Msa0145550:intron | 35.0% | |
| GTAAAAACCAATGAGAACAG+TGG | + | chr1_4:5223155-5223174 | None:intergenic | 35.0% | |
| CAAACCATAAAGCATGTACT+TGG | - | chr1_4:5223192-5223211 | Msa0145550:intron | 35.0% | |
| CATGTACTTGGGATGATTAA+TGG | - | chr1_4:5223204-5223223 | Msa0145550:intron | 35.0% | |
| ! | GCACTTCCTAAAACATTTTC+AGG | - | chr1_4:5223379-5223398 | Msa0145550:intron | 35.0% |
| GAAGTCAATACTCCTTCTAA+TGG | - | chr1_4:5223715-5223734 | Msa0145550:intron | 35.0% | |
| CGAAATGGATGAATTGGAAA+TGG | + | chr1_4:5223795-5223814 | None:intergenic | 35.0% | |
| !! | CAAAATCGGTGCTAAGAAAT+TGG | + | chr1_4:5223819-5223838 | None:intergenic | 35.0% |
| CTCAAAAGCAAACACTAGAA+AGG | + | chr1_4:5224121-5224140 | None:intergenic | 35.0% | |
| AGATGACACTGTTTACTTTG+TGG | - | chr1_4:5224577-5224596 | Msa0145550:intron | 35.0% | |
| TACCGTTGTACTTAAAGACA+AGG | + | chr1_4:5224652-5224671 | None:intergenic | 35.0% | |
| !!! | AAGGCAGCTTCTTATTTTGT+TGG | - | chr1_4:5224719-5224738 | Msa0145550:intron | 35.0% |
| ! | TCACAAGAATTACCTGCTTT+TGG | + | chr1_4:5224920-5224939 | None:intergenic | 35.0% |
| GATACGAGTCCTAATTAACA+AGG | - | chr1_4:5224948-5224967 | Msa0145550:intron | 35.0% | |
| TCCTAATTAACAAGGAACAC+TGG | - | chr1_4:5224956-5224975 | Msa0145550:intron | 35.0% | |
| ACCAGTGTTCCTTGTTAATT+AGG | + | chr1_4:5224960-5224979 | None:intergenic | 35.0% | |
| !!! | TTTTAAAATGGTCCTAAGCG+TGG | - | chr1_4:5225151-5225170 | Msa0145550:intron | 35.0% |
| TGGTTGTCTACTCTAAGTTT+AGG | + | chr1_4:5225298-5225317 | None:intergenic | 35.0% | |
| CAAGTCATCTGCTAAAGTTA+AGG | + | chr1_4:5225476-5225495 | None:intergenic | 35.0% | |
| CTTAACTTTAGCAGATGACT+TGG | - | chr1_4:5225474-5225493 | Msa0145550:CDS | 35.0% | |
| CTACAAAAGAGAGAACAATG+AGG | - | chr1_4:5225552-5225571 | Msa0145550:CDS | 35.0% | |
| TGAGAGTTAGTTGGGTAATT+TGG | - | chr1_4:5225591-5225610 | Msa0145550:CDS | 35.0% | |
| GAGAGTTAGTTGGGTAATTT+GGG | - | chr1_4:5225592-5225611 | Msa0145550:CDS | 35.0% | |
| ! | TAGTTGGGTAATTTGGGATT+TGG | - | chr1_4:5225598-5225617 | Msa0145550:CDS | 35.0% |
| !! | TTTCTTGCCTCTGTTATTTC+TGG | - | chr1_4:5225790-5225809 | Msa0145550:CDS | 35.0% |
| TTGCAAACCAGAAATAACAG+AGG | + | chr1_4:5225800-5225819 | None:intergenic | 35.0% | |
| GATTAGTGGAAAGGAATTGT+AGG | - | chr1_4:5225840-5225859 | Msa0145550:CDS | 35.0% | |
| ! | ATTAGTGTTTGACCTTTTGC+AGG | + | chr1_4:5225960-5225979 | None:intergenic | 35.0% |
| AAATGTGATAGGACCCATTA+AGG | - | chr1_4:5226036-5226055 | Msa0145550:intron | 35.0% | |
| AATGTGATAGGACCCATTAA+GGG | - | chr1_4:5226037-5226056 | Msa0145550:intron | 35.0% | |
| ATTTGGACCTTTCCCTTAAT+GGG | + | chr1_4:5226052-5226071 | None:intergenic | 35.0% | |
| AGAGAAATACACATGGAAGA+GGG | - | chr1_4:5226114-5226133 | Msa0145550:intron | 35.0% | |
| ! | GATTAGAAGATTTGGAACAC+AGG | + | chr1_4:5226254-5226273 | None:intergenic | 35.0% |
| CGTTAAAGATCCTATTGGAT+GGG | + | chr1_4:5226363-5226382 | None:intergenic | 35.0% | |
| ACGTTAAAGATCCTATTGGA+TGG | + | chr1_4:5226364-5226383 | None:intergenic | 35.0% | |
| AGGATCTTTAACGTGAAATC+CGG | - | chr1_4:5226370-5226389 | Msa0145550:intron | 35.0% | |
| ! | TTTGCTCTATGGATTATAGG+AGG | + | chr1_4:5226541-5226560 | None:intergenic | 35.0% |
| ! | AGCTTTGCTCTATGGATTAT+AGG | + | chr1_4:5226544-5226563 | None:intergenic | 35.0% |
| ! | CTTTTCTTCAAGCATTCACA+AGG | + | chr1_4:5226754-5226773 | None:intergenic | 35.0% |
| !! | AGACAAGTATCAGTTTGCTA+GGG | + | chr1_4:5226874-5226893 | None:intergenic | 35.0% |
| ! | TAGACAAGTATCAGTTTGCT+AGG | + | chr1_4:5226875-5226894 | None:intergenic | 35.0% |
| TAGCAAACTGATACTTGTCT+AGG | - | chr1_4:5226874-5226893 | Msa0145550:CDS | 35.0% | |
| ATCAAAACGTTCAATGTCGA+TGG | - | chr1_4:5227076-5227095 | Msa0145550:intron | 35.0% | |
| AGGTTACTTAAAGATAAGGG+CGG | + | chr1_4:5227174-5227193 | None:intergenic | 35.0% | |
| CCCAGGTTACTTAAAGATAA+GGG | + | chr1_4:5227177-5227196 | None:intergenic | 35.0% | |
| CCCTTATCTTTAAGTAACCT+GGG | - | chr1_4:5227174-5227193 | Msa0145550:intron | 35.0% | |
| ACCCAGGTTACTTAAAGATA+AGG | + | chr1_4:5227178-5227197 | None:intergenic | 35.0% | |
| GCTTGACAAACTGATATTGT+TGG | - | chr1_4:5227210-5227229 | Msa0145550:intron | 35.0% | |
| ! | GTATTTCTCCTTTTATGAGG+GGG | - | chr1_4:5227257-5227276 | Msa0145550:intron | 35.0% |
| ! | ATTTCTCCTTTTATGTGTGG+AGG | - | chr1_4:5227457-5227476 | Msa0145550:intron | 35.0% |
| TATCACTATGGAATTGTGGA+TGG | + | chr1_4:5227594-5227613 | None:intergenic | 35.0% | |
| AATTAGGACTCGTATCACTA+TGG | + | chr1_4:5227606-5227625 | None:intergenic | 35.0% | |
| AATACAGATCACACTCTATG+TGG | - | chr1_4:5228117-5228136 | Msa0145550:intron | 35.0% | |
| CGTGGAAACAACATAAAAGT+TGG | - | chr1_4:5228159-5228178 | Msa0145550:CDS | 35.0% | |
| TGGAAAAGATGATTCTAGGT+TGG | - | chr1_4:5228242-5228261 | Msa0145550:CDS | 35.0% | |
| ATTGGGTGAAACGGATGAAT+TGG | + | chr1_4:5222159-5222178 | None:intergenic | 40.0% | |
| ! | AAGTTGTTGTTCCAAATGGG+TGG | + | chr1_4:5222191-5222210 | None:intergenic | 40.0% |
| ATTGTGGTGTAAGGGTTTCT+TGG | - | chr1_4:5222501-5222520 | Msa0145550:intron | 40.0% | |
| !!! | CCTCTTTTGGTTCTTACTCT+TGG | + | chr1_4:5222803-5222822 | None:intergenic | 40.0% |
| CCAAGAGTAAGAACCAAAAG+AGG | - | chr1_4:5222800-5222819 | Msa0145550:intron | 40.0% | |
| ! | ATTTCACTCTACCCCTCTTT+TGG | + | chr1_4:5222816-5222835 | None:intergenic | 40.0% |
| AAGAGGGGTAGAGTGAAATT+AGG | - | chr1_4:5222817-5222836 | Msa0145550:intron | 40.0% | |
| AGAGGGGTAGAGTGAAATTA+GGG | - | chr1_4:5222818-5222837 | Msa0145550:intron | 40.0% | |
| ! | ACCAAATTGACTTACGTCTG+GGG | + | chr1_4:5222981-5223000 | None:intergenic | 40.0% |
| ! | GACCAAATTGACTTACGTCT+GGG | + | chr1_4:5222982-5223001 | None:intergenic | 40.0% |
| CATCCCAAGTACATGCTTTA+TGG | + | chr1_4:5223199-5223218 | None:intergenic | 40.0% | |
| ! | AGCTGAAGAATCTGAGATGT+TGG | + | chr1_4:5223315-5223334 | None:intergenic | 40.0% |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_4:5223437-5223456 | None:intergenic | 40.0% | |
| AAACTCCACTAGGACCTTTA+AGG | + | chr1_4:5223438-5223457 | None:intergenic | 40.0% | |
| ATATCCCACAAAACTCCACT+AGG | + | chr1_4:5223448-5223467 | None:intergenic | 40.0% | |
| !! | AGTGGAGTTTTGTGGGATAT+AGG | - | chr1_4:5223448-5223467 | Msa0145550:intron | 40.0% |
| !! | GTGGAGTTTTGTGGGATATA+GGG | - | chr1_4:5223449-5223468 | Msa0145550:intron | 40.0% |
| GATACAGTTTACGCAACGAA+TGG | - | chr1_4:5223487-5223506 | Msa0145550:intron | 40.0% | |
| TTCCTTGTCGTCAAGTACAA+TGG | - | chr1_4:5223553-5223572 | Msa0145550:intron | 40.0% | |
| CAATGGTGAATCACTCTTTG+AGG | - | chr1_4:5223570-5223589 | Msa0145550:intron | 40.0% | |
| GACAAGCTCATACTGAACAA+GGG | - | chr1_4:5223656-5223675 | Msa0145550:intron | 40.0% | |
| ACAAGCTCATACTGAACAAG+GGG | - | chr1_4:5223657-5223676 | Msa0145550:intron | 40.0% | |
| CATTCAACACTGCCATTAGA+AGG | + | chr1_4:5223730-5223749 | None:intergenic | 40.0% | |
| ! | TCTAATGGCAGTGTTGAATG+CGG | - | chr1_4:5223730-5223749 | Msa0145550:intron | 40.0% |
| CGGTTTGCCTGAAAAATCAT+GGG | - | chr1_4:5223750-5223769 | Msa0145550:intron | 40.0% | |
| TTTGCCTGAAAAATCATGGG+AGG | - | chr1_4:5223753-5223772 | Msa0145550:intron | 40.0% | |
| ! | TCTTCCTCCCATGATTTTTC+AGG | + | chr1_4:5223760-5223779 | None:intergenic | 40.0% |
| ATTGGGCGAAATGGATGAAT+TGG | + | chr1_4:5223801-5223820 | None:intergenic | 40.0% | |
| TGCTAAGAAATTGGGCGAAA+TGG | + | chr1_4:5223810-5223829 | None:intergenic | 40.0% | |
| CACCCAAGGAAAAGAGAAAA+AGG | + | chr1_4:5223878-5223897 | None:intergenic | 40.0% | |
| AAAGCAAACACTAGAAAGGG+AGG | + | chr1_4:5224117-5224136 | None:intergenic | 40.0% | |
| TTGAGCTTGCATTGCAATAG+AGG | - | chr1_4:5224151-5224170 | Msa0145550:intron | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_4:5224518-5224537 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_4:5224515-5224534 | Msa0145550:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_4:5223437-5223456 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr1_4:5224542-5224561 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr1_4:5224542-5224561 | Msa0145550:intron | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | - | chr1_4:5224543-5224562 | Msa0145550:intron | 40.0% | |
| GACACTGTTTACTTTGTGGA+CGG | - | chr1_4:5224581-5224600 | Msa0145550:intron | 40.0% | |
| CAACGGTAAATCACTCTTTG+AGG | - | chr1_4:5224664-5224683 | Msa0145550:intron | 40.0% | |
| TGGAGATAGTTTCTGTGAGA+AGG | - | chr1_4:5224700-5224719 | Msa0145550:intron | 40.0% | |
| TTCATTAACAGGCCTCTTCT+TGG | + | chr1_4:5224864-5224883 | None:intergenic | 40.0% | |
| ACAGGCGTAACTTCATTAAC+AGG | + | chr1_4:5224875-5224894 | None:intergenic | 40.0% | |
| GATACTCATAAACCACGCTT+AGG | + | chr1_4:5225166-5225185 | None:intergenic | 40.0% | |
| CAAAAGAGAGAACAATGAGG+TGG | - | chr1_4:5225555-5225574 | Msa0145550:CDS | 40.0% | |
| AGGGAAAGTGAGAGTTAGTT+GGG | - | chr1_4:5225583-5225602 | Msa0145550:CDS | 40.0% | |
| ! | TGGGATTTGGTTATATGAGG+TGG | - | chr1_4:5225611-5225630 | Msa0145550:CDS | 40.0% |
| GTTATATGAGGTGGTAGTTG+TGG | - | chr1_4:5225620-5225639 | Msa0145550:CDS | 40.0% | |
| AGCATTGCTCTGTGTAGTTA+GGG | - | chr1_4:5225713-5225732 | Msa0145550:CDS | 40.0% | |
| AACAAATTAGTCCGACCTTC+TGG | - | chr1_4:5225818-5225837 | Msa0145550:CDS | 40.0% | |
| TTTCCACTAATCCAGAAGGT+CGG | + | chr1_4:5225832-5225851 | None:intergenic | 40.0% | |
| TTCCTTTCCACTAATCCAGA+AGG | + | chr1_4:5225836-5225855 | None:intergenic | 40.0% | |
| TCACAAGAAAAGCTATGACG+AGG | + | chr1_4:5225888-5225907 | None:intergenic | 40.0% | |
| ! | TTTGACCTTTTGCAGGAAAC+AGG | + | chr1_4:5225953-5225972 | None:intergenic | 40.0% |
| CATTTGGACCTTTCCCTTAA+TGG | + | chr1_4:5226053-5226072 | None:intergenic | 40.0% | |
| CATTAAGGGAAAGGTCCAAA+TGG | - | chr1_4:5226051-5226070 | Msa0145550:intron | 40.0% | |
| TTGTCAACTTAGTTGGAGAG+AGG | - | chr1_4:5226090-5226109 | Msa0145550:intron | 40.0% | |
| TGTCAACTTAGTTGGAGAGA+GGG | - | chr1_4:5226091-5226110 | Msa0145550:intron | 40.0% | |
| GAGAGAAATACACATGGAAG+AGG | - | chr1_4:5226113-5226132 | Msa0145550:intron | 40.0% | |
| GAGAAATACACATGGAAGAG+GGG | - | chr1_4:5226115-5226134 | Msa0145550:intron | 40.0% | |
| GAAGAGGGGAATATTTAGAG+AGG | - | chr1_4:5226129-5226148 | Msa0145550:intron | 40.0% | |
| ! | AGAAGATTTGGAACACAGGT+GGG | + | chr1_4:5226250-5226269 | None:intergenic | 40.0% |
| ! | TAGAAGATTTGGAACACAGG+TGG | + | chr1_4:5226251-5226270 | None:intergenic | 40.0% |
| !!! | GGTGAAGCTGGTCTTATTTT+TGG | + | chr1_4:5226324-5226343 | None:intergenic | 40.0% |
| !! | ATGGGTTGAAAGAGCATCAA+GGG | + | chr1_4:5226345-5226364 | None:intergenic | 40.0% |
| ! | ACTGGTTTCCCTCTTATATC+CGG | - | chr1_4:5226430-5226449 | Msa0145550:intron | 40.0% |
| TCTGAAAGAGCTTTGCTCTA+TGG | + | chr1_4:5226552-5226571 | None:intergenic | 40.0% | |
| ATAGAGCAAAGCTCTTTCAG+AGG | - | chr1_4:5226551-5226570 | Msa0145550:CDS | 40.0% | |
| TACAATTTCTACTGGGCAGA+GGG | + | chr1_4:5226590-5226609 | None:intergenic | 40.0% | |
| TTACAATTTCTACTGGGCAG+AGG | + | chr1_4:5226591-5226610 | None:intergenic | 40.0% | |
| TTCTTCAAGCATTCACAAGG+AGG | + | chr1_4:5226751-5226770 | None:intergenic | 40.0% | |
| AACTGTTCAATACCACACAG+AGG | - | chr1_4:5226967-5226986 | Msa0145550:intron | 40.0% | |
| AAAAAGCTCACCAGAATACG+TGG | + | chr1_4:5227103-5227122 | None:intergenic | 40.0% | |
| TACTTAAAGATAAGGGCGGA+GGG | + | chr1_4:5227170-5227189 | None:intergenic | 40.0% | |
| TTACTTAAAGATAAGGGCGG+AGG | + | chr1_4:5227171-5227190 | None:intergenic | 40.0% | |
| GCCCTTATCTTTAAGTAACC+TGG | - | chr1_4:5227173-5227192 | Msa0145550:intron | 40.0% | |
| AAGCAAATGAAACACTACCC+AGG | + | chr1_4:5227194-5227213 | None:intergenic | 40.0% | |
| GTTGTTGTGATGTGACTGAA+AGG | - | chr1_4:5227301-5227320 | Msa0145550:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1_4:5227376-5227395 | Msa0145550:intron | 40.0% | |
| GAAATACTAAAAGGGCAACC+CGG | + | chr1_4:5227442-5227461 | None:intergenic | 40.0% | |
| TACCATCCTCCACACATAAA+AGG | + | chr1_4:5227466-5227485 | None:intergenic | 40.0% | |
| CTCGTATCACTATGGAATTG+TGG | + | chr1_4:5227598-5227617 | None:intergenic | 40.0% | |
| TAATGGCAAGCACAGTGAAT+AGG | + | chr1_4:5227937-5227956 | None:intergenic | 40.0% | |
| ! | ATGTGCCTTTGAGAATTGGT+GGG | + | chr1_4:5228013-5228032 | None:intergenic | 40.0% |
| ! | GAAGATGTGCCTTTGAGAAT+TGG | + | chr1_4:5228017-5228036 | None:intergenic | 40.0% |
| TCTGTATTCACTCTAGTCGT+TGG | + | chr1_4:5228105-5228124 | None:intergenic | 40.0% | |
| ACCAAACAACAGCAGGTCTT+GGG | - | chr1_4:5222108-5222127 | Msa0145550:CDS | 45.0% | |
| CTTGGGAGGAAGACATTTAC+TGG | - | chr1_4:5222125-5222144 | Msa0145550:CDS | 45.0% | |
| ATTGCGTGTTGAGTCTGTCT+TGG | - | chr1_4:5222708-5222727 | Msa0145550:intron | 45.0% | |
| TTGCGTGTTGAGTCTGTCTT+GGG | - | chr1_4:5222709-5222728 | Msa0145550:intron | 45.0% | |
| TTGTAGCTCTCGTGAGAGAA+AGG | - | chr1_4:5222858-5222877 | Msa0145550:intron | 45.0% | |
| TGTAGCTCTCGTGAGAGAAA+GGG | - | chr1_4:5222859-5222878 | Msa0145550:intron | 45.0% | |
| ! | CAAATTGACTTACGTCTGGG+GGG | + | chr1_4:5222979-5222998 | None:intergenic | 45.0% |
| ! | CCAAATTGACTTACGTCTGG+GGG | + | chr1_4:5222980-5222999 | None:intergenic | 45.0% |
| ! | GGACCAAATTGACTTACGTC+TGG | + | chr1_4:5222983-5223002 | None:intergenic | 45.0% |
| TTGGTTGCCACTGTTCTCAT+TGG | - | chr1_4:5223145-5223164 | Msa0145550:intron | 45.0% | |
| ! | CCTTTAAGGGTCACATTTGC+TGG | + | chr1_4:5223424-5223443 | None:intergenic | 45.0% |
| CCAGCAAATGTGACCCTTAA+AGG | - | chr1_4:5223421-5223440 | Msa0145550:intron | 45.0% | |
| ! | AAGGTCCTAGTGGAGTTTTG+TGG | - | chr1_4:5223440-5223459 | Msa0145550:intron | 45.0% |
| !! | AGGTCCTAGTGGAGTTTTGT+GGG | - | chr1_4:5223441-5223460 | Msa0145550:intron | 45.0% |
| CAGTTTACGCAACGAATGGT+TGG | - | chr1_4:5223491-5223510 | Msa0145550:intron | 45.0% | |
| CACCATTGTACTTGACGACA+AGG | + | chr1_4:5223558-5223577 | None:intergenic | 45.0% | |
| GGACAAGCTCATACTGAACA+AGG | - | chr1_4:5223655-5223674 | Msa0145550:intron | 45.0% | |
| CAAGCTCATACTGAACAAGG+GGG | - | chr1_4:5223658-5223677 | Msa0145550:intron | 45.0% | |
| GCGGTTTGCCTGAAAAATCA+TGG | - | chr1_4:5223749-5223768 | Msa0145550:intron | 45.0% | |
| CATGGGAGGAAGACATTTAC+TGG | - | chr1_4:5223767-5223786 | Msa0145550:intron | 45.0% | |
| CAAACACTAGAAAGGGAGGA+AGG | + | chr1_4:5224113-5224132 | None:intergenic | 45.0% | |
| CTGAAGAGCCTACGAGATAT+TGG | + | chr1_4:5224405-5224424 | None:intergenic | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_4:5224532-5224551 | None:intergenic | 45.0% | |
| CTGTTTACTTTGTGGACGGT+TGG | - | chr1_4:5224585-5224604 | Msa0145550:intron | 45.0% | |
| !! | CTTTTGCCGTTTGTTTGGGA+GGG | + | chr1_4:5224839-5224858 | None:intergenic | 45.0% |
| !! | GGTCCTTTTGCCGTTTGTTT+GGG | + | chr1_4:5224843-5224862 | None:intergenic | 45.0% |
| !! | TGGTCCTTTTGCCGTTTGTT+TGG | + | chr1_4:5224844-5224863 | None:intergenic | 45.0% |
| TCTTTGCGCTACACATGCTT+TGG | - | chr1_4:5225063-5225082 | Msa0145550:intron | 45.0% | |
| ACTTGGGCTTGAGTGACAAA+GGG | - | chr1_4:5225491-5225510 | Msa0145550:CDS | 45.0% | |
| GAGGGAAAGTGAGAGTTAGT+TGG | - | chr1_4:5225582-5225601 | Msa0145550:CDS | 45.0% | |
| TGGTAGTTGTGGAGAGATAG+AGG | - | chr1_4:5225631-5225650 | Msa0145550:CDS | 45.0% | |
| GGTAGTTGTGGAGAGATAGA+GGG | - | chr1_4:5225632-5225651 | Msa0145550:CDS | 45.0% | |
| ! | GAGCATTGCTCTGTGTAGTT+AGG | - | chr1_4:5225712-5225731 | Msa0145550:CDS | 45.0% |
| !! | GACCTTCTGGATTAGTGGAA+AGG | - | chr1_4:5225831-5225850 | Msa0145550:CDS | 45.0% |
| GCTTACCTGTTTCCTGCAAA+AGG | - | chr1_4:5225945-5225964 | Msa0145550:intron | 45.0% | |
| GATAGGACCCATTAAGGGAA+AGG | - | chr1_4:5226042-5226061 | Msa0145550:intron | 45.0% | |
| GAGAGGGAGAGAAATACACA+TGG | - | chr1_4:5226107-5226126 | Msa0145550:intron | 45.0% | |
| TTTAGAGAGGCAGTGTCATG+AGG | - | chr1_4:5226142-5226161 | Msa0145550:intron | 45.0% | |
| CTCAGTTGAACAGCTAATGC+TGG | + | chr1_4:5226225-5226244 | None:intergenic | 45.0% | |
| !! | GATGGGTTGAAAGAGCATCA+AGG | + | chr1_4:5226346-5226365 | None:intergenic | 45.0% |
| GCTCTTTCAACCCATCCAAT+AGG | - | chr1_4:5226350-5226369 | Msa0145550:intron | 45.0% | |
| AGTGACGATGGACAACATGT+GGG | + | chr1_4:5226413-5226432 | None:intergenic | 45.0% | |
| TCTATCAATTGGTCACCTGC+CGG | + | chr1_4:5226452-5226471 | None:intergenic | 45.0% | |
| CAACTTTATCAGTTGCGCCA+AGG | + | chr1_4:5227285-5227304 | None:intergenic | 45.0% | |
| GTGATGTGACTGAAAGGTCA+CGG | - | chr1_4:5227307-5227326 | Msa0145550:intron | 45.0% | |
| TGATGTGACTGAAAGGTCAC+GGG | - | chr1_4:5227308-5227327 | Msa0145550:intron | 45.0% | |
| AACAGCCTCTTGTGGAAAAC+AGG | - | chr1_4:5227344-5227363 | Msa0145550:intron | 45.0% | |
| ACAGCCTCTTGTGGAAAACA+GGG | - | chr1_4:5227345-5227364 | Msa0145550:intron | 45.0% | |
| ! | CTTACCCTGTTTTCCACAAG+AGG | + | chr1_4:5227352-5227371 | None:intergenic | 45.0% |
| CTCTTGTGGAAAACAGGGTA+AGG | - | chr1_4:5227350-5227369 | Msa0145550:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_4:5227372-5227391 | Msa0145550:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_4:5227375-5227394 | Msa0145550:intron | 45.0% | |
| ! | CTCCTTTTATGTGTGGAGGA+TGG | - | chr1_4:5227461-5227480 | Msa0145550:intron | 45.0% |
| ATGTGTGGAGGATGGTAACT+TGG | - | chr1_4:5227469-5227488 | Msa0145550:intron | 45.0% | |
| TGTACCCCACCAATTCTCAA+AGG | - | chr1_4:5228005-5228024 | Msa0145550:intron | 45.0% | |
| ! | TGTGCCTTTGAGAATTGGTG+GGG | + | chr1_4:5228012-5228031 | None:intergenic | 45.0% |
| ! | GATGTGCCTTTGAGAATTGG+TGG | + | chr1_4:5228014-5228033 | None:intergenic | 45.0% |
| ACAGATCACACTCTATGTGG+AGG | - | chr1_4:5228120-5228139 | Msa0145550:intron | 45.0% | |
| ATCACACTCTATGTGGAGGA+TGG | - | chr1_4:5228124-5228143 | Msa0145550:intron | 45.0% | |
| TCACACTCTATGTGGAGGAT+GGG | - | chr1_4:5228125-5228144 | Msa0145550:intron | 45.0% | |
| ! | GGATGGGTGAATTTTGTTCG+TGG | - | chr1_4:5228141-5228160 | Msa0145550:intron | 45.0% |
| GAGGAACACCAAACAACAGC+AGG | - | chr1_4:5222101-5222120 | Msa0145550:CDS | 50.0% | |
| CACCAAACAACAGCAGGTCT+TGG | - | chr1_4:5222107-5222126 | Msa0145550:CDS | 50.0% | |
| TCCCAAGACCTGCTGTTGTT+TGG | + | chr1_4:5222112-5222131 | None:intergenic | 50.0% | |
| AAACAACAGCAGGTCTTGGG+AGG | - | chr1_4:5222111-5222130 | Msa0145550:CDS | 50.0% | |
| CAGGAGTTTGACAGCAGCAT+GGG | - | chr1_4:5222627-5222646 | Msa0145550:intron | 50.0% | |
| AGTTTGACAGCAGCATGGGA+TGG | - | chr1_4:5222631-5222650 | Msa0145550:intron | 50.0% | |
| AATTTGCGCCATGCTGTGCT+GGG | - | chr1_4:5222666-5222685 | Msa0145550:intron | 50.0% | |
| GTAGCTCTCGTGAGAGAAAG+GGG | - | chr1_4:5222860-5222879 | Msa0145550:intron | 50.0% | |
| TCTCGTGAGAGAAAGGGGAA+AGG | - | chr1_4:5222865-5222884 | Msa0145550:intron | 50.0% | |
| CCCCCAGACGTAAGTCAATT+TGG | - | chr1_4:5222977-5222996 | Msa0145550:intron | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_4:5223430-5223449 | Msa0145550:intron | 50.0% | |
| GTGCATGTACTCAACACCCA+AGG | + | chr1_4:5223892-5223911 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_4:5223430-5223449 | Msa0145550:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_4:5224534-5224553 | Msa0145550:intron | 50.0% | |
| GGAATGCTCCAACCGAACAA+GGG | - | chr1_4:5224750-5224769 | Msa0145550:intron | 50.0% | |
| GAATGCTCCAACCGAACAAG+GGG | - | chr1_4:5224751-5224770 | Msa0145550:intron | 50.0% | |
| AATGCTCCAACCGAACAAGG+GGG | - | chr1_4:5224752-5224771 | Msa0145550:intron | 50.0% | |
| TTTCTACCCCCTTGTTCGGT+TGG | + | chr1_4:5224761-5224780 | None:intergenic | 50.0% | |
| AACCGAACAAGGGGGTAGAA+AGG | - | chr1_4:5224760-5224779 | Msa0145550:intron | 50.0% | |
| TGCCTTTCTACCCCCTTGTT+CGG | + | chr1_4:5224765-5224784 | None:intergenic | 50.0% | |
| TGTTTCCCCTGAGCAGTTCA+TGG | - | chr1_4:5224802-5224821 | Msa0145550:intron | 50.0% | |
| ATCAGCCATGAACTGCTCAG+GGG | + | chr1_4:5224810-5224829 | None:intergenic | 50.0% | |
| CATCAGCCATGAACTGCTCA+GGG | + | chr1_4:5224811-5224830 | None:intergenic | 50.0% | |
| TGAGCAGTTCATGGCTGATG+CGG | - | chr1_4:5224811-5224830 | Msa0145550:intron | 50.0% | |
| !! | CCTTTTGCCGTTTGTTTGGG+AGG | + | chr1_4:5224840-5224859 | None:intergenic | 50.0% |
| CCTCCCAAACAAACGGCAAA+AGG | - | chr1_4:5224837-5224856 | Msa0145550:intron | 50.0% | |
| ACGGCAAAAGGACCAAGAAG+AGG | - | chr1_4:5224849-5224868 | Msa0145550:intron | 50.0% | |
| GACTTGGGCTTGAGTGACAA+AGG | - | chr1_4:5225490-5225509 | Msa0145550:CDS | 50.0% | |
| GAGAGAACAATGAGGTGGCA+AGG | - | chr1_4:5225560-5225579 | Msa0145550:CDS | 50.0% | |
| AGAACAATGAGGTGGCAAGG+AGG | - | chr1_4:5225563-5225582 | Msa0145550:CDS | 50.0% | |
| GAACAATGAGGTGGCAAGGA+GGG | - | chr1_4:5225564-5225583 | Msa0145550:CDS | 50.0% | |
| ! | AGTCCGACCTTCTGGATTAG+TGG | - | chr1_4:5225826-5225845 | Msa0145550:CDS | 50.0% |
| AGGGAAAGGTCCAAATGGAG+AGG | - | chr1_4:5226056-5226075 | Msa0145550:intron | 50.0% | |
| !! | AAGAGCATCAAGGGTGAAGC+TGG | + | chr1_4:5226336-5226355 | None:intergenic | 50.0% |
| CAGTGACGATGGACAACATG+TGG | + | chr1_4:5226414-5226433 | None:intergenic | 50.0% | |
| CACATGTTGTCCATCGTCAC+TGG | - | chr1_4:5226412-5226431 | Msa0145550:intron | 50.0% | |
| AAGAGGGAAACCAGTGACGA+TGG | + | chr1_4:5226425-5226444 | None:intergenic | 50.0% | |
| GTTTCCCTCTTATATCCGGC+AGG | - | chr1_4:5226434-5226453 | Msa0145550:intron | 50.0% | |
| GTCACCTGCCGGATATAAGA+GGG | + | chr1_4:5226441-5226460 | None:intergenic | 50.0% | |
| ! | TTCTACTGGGCAGAGGGTAT+TGG | + | chr1_4:5226584-5226603 | None:intergenic | 50.0% |
| TGTCGATGGTCCACGTATTC+TGG | - | chr1_4:5227090-5227109 | Msa0145550:intron | 50.0% | |
| CCAAGGTTCCCCCTCATAAA+AGG | + | chr1_4:5227268-5227287 | None:intergenic | 50.0% | |
| ! | CCTTTTATGAGGGGGAACCT+TGG | - | chr1_4:5227265-5227284 | Msa0145550:intron | 50.0% |
| ! | TTCCACAAGAGGCTGTTTCC+AGG | + | chr1_4:5227341-5227360 | None:intergenic | 50.0% |
| CCATGCTGCTGTCAAACTCC+TGG | + | chr1_4:5222629-5222648 | None:intergenic | 55.0% | |
| CCAGGAGTTTGACAGCAGCA+TGG | - | chr1_4:5222626-5222645 | Msa0145550:intron | 55.0% | |
| ACAGCAGCATGGGATGGCTT+GGG | - | chr1_4:5222637-5222656 | Msa0145550:intron | 55.0% | |
| CAGCACAGCATGGCGCAAAT+TGG | + | chr1_4:5222667-5222686 | None:intergenic | 55.0% | |
| CAATTTGCGCCATGCTGTGC+TGG | - | chr1_4:5222665-5222684 | Msa0145550:intron | 55.0% | |
| AAAACACGCCCAGCACAGCA+TGG | + | chr1_4:5222677-5222696 | None:intergenic | 55.0% | |
| ! | ATGCTGTGCTGGGCGTGTTT+TGG | - | chr1_4:5222676-5222695 | Msa0145550:intron | 55.0% |
| TACTGAACAAGGGGGTCGCA+AGG | - | chr1_4:5223666-5223685 | Msa0145550:intron | 55.0% | |
| GGGAATGCTCCAACCGAACA+AGG | - | chr1_4:5224749-5224768 | Msa0145550:intron | 55.0% | |
| GCATCAGCCATGAACTGCTC+AGG | + | chr1_4:5224812-5224831 | None:intergenic | 55.0% | |
| GCGGTTCCCTCCCAAACAAA+CGG | - | chr1_4:5224830-5224849 | Msa0145550:intron | 55.0% | |
| CTTCCTCGCTTAGTCTGGAC+AGG | + | chr1_4:5224893-5224912 | None:intergenic | 55.0% | |
| GTCGTCTTCCTCGCTTAGTC+TGG | + | chr1_4:5224898-5224917 | None:intergenic | 55.0% | |
| CGAGGAAGACGACCAAAAGC+AGG | - | chr1_4:5224905-5224924 | Msa0145550:intron | 55.0% | |
| AGAGAGGCAGTGTCATGAGG+AGG | - | chr1_4:5226145-5226164 | Msa0145550:intron | 55.0% | |
| GGCTACGATGGTAGAGTCAC+CGG | + | chr1_4:5226392-5226411 | None:intergenic | 55.0% | |
| ! | GGACAACATGTGGGCTACGA+TGG | + | chr1_4:5226404-5226423 | None:intergenic | 55.0% |
| GGTCACCTGCCGGATATAAG+AGG | + | chr1_4:5226442-5226461 | None:intergenic | 55.0% | |
| TTGACAGTGCTGCCTCTGTG+TGG | + | chr1_4:5226982-5227001 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_4:5227320-5227339 | Msa0145550:intron | 55.0% | |
| GTCCTGGAAACAGCCTCTTG+TGG | - | chr1_4:5227336-5227355 | Msa0145550:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr1_4:5227415-5227434 | None:intergenic | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr1_4:5227416-5227435 | None:intergenic | 55.0% | |
| GCATCCTGCCAGATTGCGCT+AGG | - | chr1_4:5222596-5222615 | Msa0145550:intron | 60.0% | |
| GACAGCAGCATGGGATGGCT+TGG | - | chr1_4:5222636-5222655 | Msa0145550:intron | 60.0% | |
| CAGCAGCATGGGATGGCTTG+GGG | - | chr1_4:5222638-5222657 | Msa0145550:intron | 60.0% | |
| ! | ATGCGCCATGTGCTGGTGTG+CGG | - | chr1_4:5222750-5222769 | Msa0145550:intron | 60.0% |
| CAGATCCGCACACCAGCACA+TGG | + | chr1_4:5222758-5222777 | None:intergenic | 60.0% | |
| ! | CATGTGCTGGTGTGCGGATC+TGG | - | chr1_4:5222756-5222775 | Msa0145550:intron | 60.0% |
| ACAAGGGGGTCGCAAGGCAA+AGG | - | chr1_4:5223672-5223691 | Msa0145550:intron | 60.0% | |
| ACGCCTGTCCAGACTAAGCG+AGG | - | chr1_4:5224887-5224906 | Msa0145550:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_4:5227388-5227407 | Msa0145550:intron | 60.0% |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr1_4:5227403-5227422 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr1_4:5227404-5227423 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr1_4:5227403-5227422 | Msa0145550:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr1_4:5227404-5227423 | Msa0145550:intron | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | - | chr1_4:5227420-5227439 | Msa0145550:intron | 60.0% |
| CGTGTTCGCGTCGCTGAAGT+TGG | - | chr1_4:5228222-5228241 | Msa0145550:CDS | 60.0% | |
| TGCGCCTAGCGCAATCTGGC+AGG | + | chr1_4:5222603-5222622 | None:intergenic | 65.0% | |
| GCGTTGCGCCTAGCGCAATC+TGG | + | chr1_4:5222607-5222626 | None:intergenic | 65.0% | |
| ATTGCGCTAGGCGCAACGCC+AGG | - | chr1_4:5222608-5222627 | Msa0145550:intron | 65.0% | |
| !!! | TGGGCGTGTTTTGGCTGCGC+AGG | - | chr1_4:5222685-5222704 | Msa0145550:intron | 65.0% |
| TCTTGGGTGCCAGACGCTCC+AGG | - | chr1_4:5222725-5222744 | Msa0145550:intron | 65.0% | |
| GCACACCAGCACATGGCGCA+TGG | + | chr1_4:5222751-5222770 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_4:5227390-5227409 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr1_4:5227405-5227424 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr1_4:5227409-5227428 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr1_4:5227410-5227429 | None:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | - | chr1_4:5227421-5227440 | Msa0145550:intron | 65.0% |
| CCAGCACATGGCGCATGGCC+TGG | + | chr1_4:5222746-5222765 | None:intergenic | 70.0% | |
| CCAGGCCATGCGCCATGTGC+TGG | - | chr1_4:5222743-5222762 | Msa0145550:intron | 70.0% | |
| ! | GGCGCATGGCCTGGAGCGTC+TGG | + | chr1_4:5222737-5222756 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5222088 | 5228272 | 5222088 | ID=Msa0145550;Name=Msa0145550 |
| chr1_4 | mRNA | 5222088 | 5228272 | 5222088 | ID=Msa0145550-mRNA-1;Parent=Msa0145550;Name=Msa0145550-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|5|0|480 |
| chr1_4 | exon | 5228150 | 5228272 | 5228150 | ID=Msa0145550-mRNA-1:exon:2183;Parent=Msa0145550-mRNA-1 |
| chr1_4 | exon | 5226511 | 5226981 | 5226511 | ID=Msa0145550-mRNA-1:exon:2182;Parent=Msa0145550-mRNA-1 |
| chr1_4 | exon | 5225434 | 5225887 | 5225434 | ID=Msa0145550-mRNA-1:exon:2181;Parent=Msa0145550-mRNA-1 |
| chr1_4 | exon | 5223249 | 5223373 | 5223249 | ID=Msa0145550-mRNA-1:exon:2180;Parent=Msa0145550-mRNA-1 |
| chr1_4 | exon | 5222088 | 5222357 | 5222088 | ID=Msa0145550-mRNA-1:exon:2179;Parent=Msa0145550-mRNA-1 |
| chr1_4 | CDS | 5228150 | 5228272 | 5228150 | ID=Msa0145550-mRNA-1:cds;Parent=Msa0145550-mRNA-1 |
| chr1_4 | CDS | 5226511 | 5226981 | 5226511 | ID=Msa0145550-mRNA-1:cds;Parent=Msa0145550-mRNA-1 |
| chr1_4 | CDS | 5225434 | 5225887 | 5225434 | ID=Msa0145550-mRNA-1:cds;Parent=Msa0145550-mRNA-1 |
| chr1_4 | CDS | 5223249 | 5223373 | 5223249 | ID=Msa0145550-mRNA-1:cds;Parent=Msa0145550-mRNA-1 |
| chr1_4 | CDS | 5222088 | 5222357 | 5222088 | ID=Msa0145550-mRNA-1:cds;Parent=Msa0145550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
