AlfalfaGEDB | Msa0146060

M. sativa cultivar zhongmu-4 / Msa0146060

KEGG: -
GO: GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146060	XP_003589071.2	91.218	353	26	3	1	352	1	349	0.0	599

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146060	sp\|Q7XHI9\|BH084_ARATH	86.316	95	13	0	271	365	231	325	7.35e-53	181

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146060	G7ICC1	91.218	353	26	3	1	352	1	349	0.0	599

TFs/TRs:

Gene ID	Type	Classification
Msa0146060	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146060	MtrunA17_Chr1g0152651	91.218	353	26	3	1	352	1	349	0.0	599
Msa0146060	MtrunA17_Chr3g0134741	49.737	380	119	12	1	368	1	320	1.35e-97	293
Msa0146060	MtrunA17_Chr5g0393721	52.821	195	78	5	179	363	120	310	4.17e-51	173
Msa0146060	MtrunA17_Chr1g0207301	50.532	188	74	4	189	363	193	374	2.08e-48	167
Msa0146060	MtrunA17_Chr1g0207311	51.124	178	81	3	190	365	111	284	5.57e-47	161
Msa0146060	MtrunA17_Chr5g0435021	65.000	60	21	0	286	345	227	286	1.50e-22	96.7
Msa0146060	MtrunA17_Chr4g0074161	52.564	78	37	0	263	340	192	269	1.09e-19	89.7
Msa0146060	MtrunA17_Chr8g0384141	66.071	56	19	0	286	341	123	178	8.19e-19	85.1
Msa0146060	MtrunA17_Chr3g0134001	62.963	54	20	0	286	339	180	233	6.85e-18	82.8
Msa0146060	MtrunA17_Chr7g0243041	56.364	55	24	0	284	338	33	87	7.53e-17	77.0
Msa0146060	MtrunA17_Chr1g0190731	56.923	65	28	0	276	340	192	256	8.09e-17	80.9
Msa0146060	MtrunA17_Chr4g0035101	40.517	116	62	3	230	340	94	207	3.89e-15	75.9
Msa0146060	MtrunA17_Chr4g0014771	57.576	66	27	1	276	340	117	182	2.87e-14	70.9
Msa0146060	MtrunA17_Chr3g0144641	38.136	118	67	3	226	340	141	255	7.79e-14	72.4
Msa0146060	MtrunA17_Chr5g0415291	34.307	137	70	3	224	340	40	176	4.87e-13	68.2
Msa0146060	MtrunA17_Chr1g0153241	35.354	99	59	1	261	354	64	162	6.29e-13	68.2
Msa0146060	MtrunA17_Chr5g0421111	35.915	142	75	4	215	340	288	429	1.01e-12	69.3
Msa0146060	MtrunA17_Chr6g0484271	50.769	65	31	1	277	340	155	219	1.16e-12	67.8
Msa0146060	MtrunA17_Chr8g0365941	34.247	146	81	4	201	340	233	369	1.32e-12	68.9
Msa0146060	MtrunA17_Chr8g0339091	52.308	65	30	1	277	340	291	355	1.36e-12	68.9
Msa0146060	MtrunA17_Chr1g0193321	45.455	66	36	0	275	340	460	525	1.43e-12	68.9
Msa0146060	MtrunA17_Chr7g0234761	53.125	64	29	1	278	340	318	381	1.59e-12	68.6
Msa0146060	MtrunA17_Chr8g0363921	49.231	65	32	1	277	340	151	215	1.88e-12	67.0
Msa0146060	MtrunA17_Chr1g0152131	50.769	65	31	1	277	340	260	324	2.07e-12	68.2
Msa0146060	MtrunA17_Chr3g0095391	36.364	99	50	3	279	369	311	404	2.84e-12	67.8
Msa0146060	MtrunA17_Chr1g0174271	54.545	66	29	1	276	340	297	362	2.85e-12	67.4
Msa0146060	MtrunA17_Chr1g0182791	39.506	81	47	1	275	355	315	393	3.43e-12	67.8
Msa0146060	MtrunA17_Chr3g0131771	52.308	65	30	1	277	340	147	211	6.45e-12	65.9
Msa0146060	MtrunA17_Chr4g0032951	53.030	66	30	1	276	340	354	419	6.57e-12	66.6
Msa0146060	MtrunA17_Chr8g0385911	49.231	65	32	1	277	340	145	209	1.43e-11	65.1
Msa0146060	MtrunA17_Chr7g0258181	53.846	65	29	1	278	341	244	308	1.78e-11	64.7
Msa0146060	MtrunA17_Chr1g0213791	50.000	68	33	1	276	342	264	331	2.20e-11	64.3
Msa0146060	MtrunA17_Chr5g0402031	42.188	64	37	0	290	353	118	181	2.58e-11	64.3
Msa0146060	MtrunA17_Chr7g0258161	42.308	78	44	1	264	340	160	237	6.47e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146060	AT2G14760.1	86.316	95	13	0	271	365	231	325	7.47e-54	181
Msa0146060	AT1G27740.1	63.514	148	45	3	220	367	119	257	9.52e-54	178
Msa0146060	AT4G33880.1	79.612	103	21	0	258	360	247	349	4.07e-53	179
Msa0146060	AT2G14760.3	75.926	108	13	1	271	365	231	338	4.00e-50	171
Msa0146060	AT5G43175.1	56.463	147	63	1	221	367	77	222	1.34e-46	159
Msa0146060	AT1G66470.1	54.255	94	38	2	253	345	174	263	5.70e-25	103
Msa0146060	AT5G37800.1	56.667	90	34	2	257	345	184	269	7.90e-25	103
Msa0146060	AT2G24260.2	56.410	78	31	1	266	340	21	98	8.78e-21	90.9
Msa0146060	AT4G30980.1	46.465	99	47	2	244	340	99	193	1.52e-20	91.3
Msa0146060	AT4G30980.2	46.465	99	47	2	244	340	147	241	2.17e-20	91.7
Msa0146060	AT2G24260.1	56.410	78	31	1	266	340	124	201	2.99e-20	91.3
Msa0146060	AT3G21330.1	62.500	56	21	0	284	339	276	331	6.92e-18	84.7
Msa0146060	AT5G58010.1	56.923	65	28	0	276	340	98	162	1.29e-17	82.8
Msa0146060	AT5G01305.1	51.515	66	29	1	274	336	31	96	9.38e-17	77.8
Msa0146060	AT4G00120.1	46.970	66	34	1	286	351	121	185	9.63e-16	75.5
Msa0146060	AT5G50915.3	51.724	87	38	4	278	361	137	222	4.56e-15	75.1
Msa0146060	AT5G50915.4	51.724	87	38	4	278	361	137	222	4.56e-15	75.1
Msa0146060	AT5G50915.1	51.724	87	38	4	278	361	137	222	4.58e-15	75.1
Msa0146060	AT5G50915.2	51.724	87	38	4	278	361	137	222	4.58e-15	75.1
Msa0146060	AT1G18400.2	53.846	65	29	1	277	340	145	209	7.33e-14	71.2
Msa0146060	AT1G18400.1	54.688	64	28	1	278	340	146	209	1.29e-13	70.5
Msa0146060	AT2G18300.2	31.875	160	92	4	185	340	103	249	1.64e-13	71.2
Msa0146060	AT2G18300.1	31.875	160	92	4	185	340	103	249	1.95e-13	70.9
Msa0146060	AT1G26260.3	36.364	132	74	3	212	340	112	236	2.00e-13	70.9
Msa0146060	AT1G35460.1	54.545	66	29	1	276	340	180	245	2.24e-13	70.1
Msa0146060	AT1G26260.5	36.424	151	86	4	195	340	120	265	2.25e-13	71.2
Msa0146060	AT1G26260.4	36.424	151	86	4	195	340	142	287	2.37e-13	71.2
Msa0146060	AT1G26260.1	36.424	151	86	4	195	340	142	287	2.37e-13	71.2
Msa0146060	AT1G26260.6	36.424	151	86	4	195	340	142	287	2.37e-13	71.2
Msa0146060	AT1G26260.2	36.424	151	86	4	195	340	142	287	2.37e-13	71.2
Msa0146060	AT2G18300.3	31.875	160	92	4	185	340	103	249	2.65e-13	70.9
Msa0146060	AT1G25330.1	46.341	82	43	1	277	357	104	185	4.36e-13	68.6
Msa0146060	AT4G09180.1	52.941	68	31	1	276	342	183	250	4.43e-13	68.9
Msa0146060	AT3G07340.2	34.337	166	83	5	189	340	169	322	4.55e-13	70.5
Msa0146060	AT1G73830.2	40.187	107	60	2	247	352	117	220	4.80e-13	68.9
Msa0146060	AT1G73830.1	40.187	107	60	2	247	352	117	220	4.86e-13	68.9
Msa0146060	AT3G07340.1	34.337	166	83	5	189	340	169	322	4.91e-13	70.5
Msa0146060	AT2G42280.1	55.385	65	28	1	276	339	278	342	2.23e-12	68.2
Msa0146060	AT1G59640.1	49.231	65	32	1	277	340	136	200	2.53e-12	67.0
Msa0146060	AT3G23690.1	37.168	113	54	2	245	340	143	255	2.81e-12	67.8
Msa0146060	AT1G09530.3	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa0146060	AT1G09530.2	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa0146060	AT1G09530.5	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa0146060	AT1G09530.1	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa0146060	AT1G09530.4	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa0146060	AT1G09530.6	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa0146060	AT1G51140.1	52.308	65	30	1	276	339	303	367	3.89e-12	67.4
Msa0146060	AT5G48560.1	52.308	65	30	1	277	340	301	365	3.92e-12	67.8
Msa0146060	AT5G48560.2	53.125	64	29	1	278	340	302	365	4.47e-12	67.4
Msa0146060	AT4G34530.1	50.769	65	31	1	277	340	172	236	5.64e-12	66.6
Msa0146060	AT1G10120.2	51.562	64	30	1	278	340	207	270	5.79e-12	67.0
Msa0146060	AT1G10120.1	51.562	64	30	1	278	340	207	270	5.79e-12	67.0
Msa0146060	AT1G59640.2	49.231	65	32	1	277	340	136	200	7.17e-12	66.2
Msa0146060	AT4G00050.2	41.463	82	43	2	263	344	96	172	1.06e-11	65.5
Msa0146060	AT2G42280.3	54.688	64	28	1	276	338	278	341	1.36e-11	65.5
Msa0146060	AT1G68920.3	50.769	65	31	1	277	340	302	366	1.63e-11	65.9
Msa0146060	AT1G68920.1	50.769	65	31	1	277	340	303	367	1.65e-11	65.9
Msa0146060	AT1G68920.4	50.769	65	31	1	277	340	303	367	1.65e-11	65.9
Msa0146060	AT1G68920.2	50.769	65	31	1	277	340	303	367	1.65e-11	65.9
Msa0146060	AT4G00050.1	41.463	82	43	2	263	344	198	274	2.10e-11	65.5
Msa0146060	AT4G00050.3	41.463	82	43	2	263	344	198	274	2.19e-11	65.1
Msa0146060	AT2G20180.4	46.875	64	34	0	277	340	278	341	3.48e-11	64.7
Msa0146060	AT2G20180.6	46.875	64	34	0	277	340	278	341	3.48e-11	64.7
Msa0146060	AT2G20180.2	46.875	64	34	0	277	340	278	341	3.48e-11	64.7
Msa0146060	AT2G20180.3	46.875	64	34	0	277	340	278	341	3.48e-11	64.7
Msa0146060	AT4G36540.1	47.692	65	33	1	277	340	141	205	3.84e-11	63.9
Msa0146060	AT4G28790.1	39.560	91	52	2	264	354	260	347	3.91e-11	64.7
Msa0146060	AT4G36540.2	47.692	65	33	1	277	340	141	205	3.93e-11	63.9
Msa0146060	AT2G20180.7	46.875	64	34	0	277	340	207	270	4.20e-11	64.3
Msa0146060	AT2G20180.1	46.875	64	34	0	277	340	207	270	4.20e-11	64.3
Msa0146060	AT2G20180.5	46.875	64	34	0	277	340	207	270	4.20e-11	64.3
Msa0146060	AT2G46970.1	32.967	91	56	1	276	361	222	312	5.65e-11	63.9
Msa0146060	AT2G46970.2	32.967	91	56	1	276	361	191	281	5.94e-11	63.9
Msa0146060	AT2G46970.3	32.967	91	56	1	276	361	200	290	6.57e-11	63.9
Msa0146060	AT4G36930.1	39.189	74	45	0	284	357	198	271	7.00e-11	63.5

Find 52 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCCATTACAATCTCATTA+AGG	0.173245	1_4:-5787269	None:intergenic
TGCAAGTGATGATCATATTT+TGG	0.179137	1_4:+5787317	Msa0146060:CDS
GATCAAAATTCACTTCTTCT+AGG	0.206106	1_4:+5786967	Msa0146060:CDS
GAGAAATATAGTTAGAGTTT+TGG	0.293615	1_4:-5787089	None:intergenic
TACCCTTGCATATAGACTTT+GGG	0.321694	1_4:-5787877	None:intergenic
AAGAAATCCCATTCTCCTTC+AGG	0.327986	1_4:-5786892	None:intergenic
TTCCATTACAATCTCATTAA+GGG	0.348435	1_4:-5787268	None:intergenic
TATGCACCACTTGCTTATAA+TGG	0.352026	1_4:+5788431	Msa0146060:CDS
TGGTTATAATACTCAAATAA+TGG	0.360333	1_4:+5787347	Msa0146060:CDS
ATCAAAATTCACTTCTTCTA+GGG	0.385839	1_4:+5786968	Msa0146060:CDS
ATTAATAATAGAGGATCAAA+TGG	0.401696	1_4:+5787738	Msa0146060:CDS
CCTTCAGGGAAAGTACCTAT+AGG	0.408509	1_4:-5786877	None:intergenic
GGAACTACTCTCAACTCAAA+TGG	0.413988	1_4:+5787819	Msa0146060:CDS
TTACCCTTGCATATAGACTT+TGG	0.415798	1_4:-5787878	None:intergenic
TACTTTCCCTGAAGGAGAAT+GGG	0.424302	1_4:+5786885	Msa0146060:CDS
TGCTTGGTGTGAAGATCAAC+AGG	0.425932	1_4:-5787372	None:intergenic
TTATTTACTAGTACTTGATC+AGG	0.442578	1_4:-5787180	None:intergenic
AGTTGCAAATGCAGCTCAAA+AGG	0.443724	1_4:+5787397	Msa0146060:CDS
AATATTACCTTTGTTCCGTT+CGG	0.447590	1_4:-5788070	None:intergenic
CTGCATTTGCAACTCATGCT+TGG	0.451532	1_4:-5787388	None:intergenic
ATCCCTTAATGAGATTGTAA+TGG	0.463322	1_4:+5787266	Msa0146060:CDS
CTTCTTCTAGGGGAAAATGA+TGG	0.464779	1_4:+5786979	Msa0146060:CDS
ACAGAAGAGATTAATAATAG+AGG	0.477922	1_4:+5787729	Msa0146060:CDS
GAACTACTCTCAACTCAAAT+GGG	0.480885	1_4:+5787820	Msa0146060:CDS
GCTTATAATGGACTTGACCT+TGG	0.488445	1_4:+5788443	Msa0146060:CDS
AATGCTTCTCAAGAAAATAG+TGG	0.493032	1_4:+5787795	Msa0146060:CDS
GTACTTTCCCTGAAGGAGAA+TGG	0.496433	1_4:+5786884	Msa0146060:CDS
TTATAGAATATGGAACCTAT+AGG	0.524720	1_4:+5786862	None:intergenic
ACCCTTGCATATAGACTTTG+GGG	0.534775	1_4:-5787876	None:intergenic
ATCCCCAAAGTCTATATGCA+AGG	0.542852	1_4:+5787874	Msa0146060:CDS
AGAAATCCCATTCTCCTTCA+GGG	0.544452	1_4:-5786891	None:intergenic
ATTTCAATTATATAGGGCCA+AGG	0.547971	1_4:+5787645	Msa0146060:intron
TCAAAATTCACTTCTTCTAG+GGG	0.551527	1_4:+5786969	Msa0146060:CDS
TGAGGTTGAGATTGAGTCCA+AGG	0.556070	1_4:-5788460	None:intergenic
GAAAGTTGCTAACAATGAAG+AGG	0.569015	1_4:+5787701	Msa0146060:CDS
ATTACAATCTCATTAAGGGA+TGG	0.572980	1_4:-5787264	None:intergenic
GAAACTTGATGTGATAGAAG+TGG	0.575721	1_4:+5787419	Msa0146060:CDS
TATAAGTACAATGCTTGAAG+AGG	0.587398	1_4:+5788212	Msa0146060:CDS
TATATCTTTGAAGCTCATAG+TGG	0.590762	1_4:-5788494	None:intergenic
GAAAATGATGGATTGAACAA+TGG	0.593371	1_4:+5786991	Msa0146060:CDS
TCCCCAAAGTCTATATGCAA+GGG	0.597305	1_4:+5787875	Msa0146060:CDS
TCTTGTACCGAACGGAACAA+AGG	0.602216	1_4:+5788063	Msa0146060:CDS
CTCTAGTAGCAACATTTCTG+AGG	0.611763	1_4:+5787767	Msa0146060:CDS
CCTATAGGTACTTTCCCTGA+AGG	0.620831	1_4:+5786877	Msa0146060:CDS
AATTTCAGCAGTGCAAAATG+TGG	0.624595	1_4:-5787022	None:intergenic
TTACAAAATCTTGTACCGAA+CGG	0.632772	1_4:+5788055	Msa0146060:CDS
AAGGATGCATGAAAATTGCA+AGG	0.634976	1_4:+5787664	Msa0146060:CDS
ACTTGATGTGATAGAAGTGG+AGG	0.635683	1_4:+5787422	Msa0146060:CDS
GGGAAGACAAGAGCTAGTAG+AGG	0.635890	1_4:+5787840	Msa0146060:CDS
TCAAGTCCATTATAAGCAAG+TGG	0.638289	1_4:-5788437	None:intergenic
GCTTCTCAAGAAAATAGTGG+AGG	0.669375	1_4:+5787798	Msa0146060:CDS
ATAGTGGTAGAGAACTGTTG+AGG	0.720764	1_4:-5788478	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATGATACTTTTTTTATT+TGG	+	chr1_4:5787987-5788006	Msa0146060:intron	10.0%
!!!	TTTTGTTTTAATATTGAAAT+TGG	+	chr1_4:5788107-5788126	Msa0146060:intron	10.0%
!!!	TTTATGATACTTTTTTTATT+TGG	+	chr1_4:5787987-5788006	Msa0146060:intron	10.0%
!!!	TTTTGTTTTAATATTGAAAT+TGG	+	chr1_4:5788107-5788126	Msa0146060:intron	10.0%
!!	TGGTTATAATACTCAAATAA+TGG	+	chr1_4:5787347-5787366	Msa0146060:CDS	20.0%
!!!	TTGTTAATTTTTTCTTCAAC+AGG	-	chr1_4:5787450-5787469	None:intergenic	20.0%
!!!	GTCGTTATTTCAATTATATA+GGG	+	chr1_4:5787639-5787658	Msa0146060:intron	20.0%
!!	ATTAATAATAGAGGATCAAA+TGG	+	chr1_4:5787738-5787757	Msa0146060:CDS	20.0%
!!!	TGTTTTAATATTGAAATTGG+TGG	+	chr1_4:5788110-5788129	Msa0146060:intron	20.0%
!!	TGGTTATAATACTCAAATAA+TGG	+	chr1_4:5787347-5787366	Msa0146060:CDS	20.0%
!!!	TTGTTAATTTTTTCTTCAAC+AGG	-	chr1_4:5787450-5787469	None:intergenic	20.0%
!!!	GTCGTTATTTCAATTATATA+GGG	+	chr1_4:5787639-5787658	Msa0146060:intron	20.0%
!!	ATTAATAATAGAGGATCAAA+TGG	+	chr1_4:5787738-5787757	Msa0146060:CDS	20.0%
!!!	TGTTTTAATATTGAAATTGG+TGG	+	chr1_4:5788110-5788129	Msa0146060:intron	20.0%
!	ATCAAAATTCACTTCTTCTA+GGG	+	chr1_4:5786968-5786987	Msa0146060:CDS	25.0%
!!	GAGAAATATAGTTAGAGTTT+TGG	-	chr1_4:5787092-5787111	None:intergenic	25.0%
!	TTATTTACTAGTACTTGATC+AGG	-	chr1_4:5787183-5787202	None:intergenic	25.0%
!!	TATATCCAATGATTTTTGCA+TGG	+	chr1_4:5787215-5787234	Msa0146060:CDS	25.0%
!	TTCCATTACAATCTCATTAA+GGG	-	chr1_4:5787271-5787290	None:intergenic	25.0%
!!!	GATCATATTTTGGAGAAAAA+TGG	+	chr1_4:5787327-5787346	Msa0146060:CDS	25.0%
!!	ATTTTGTTGCTAGTAAGATT+AGG	-	chr1_4:5787533-5787552	None:intergenic	25.0%
!	ATAAAATTGATCACCATATC+CGG	-	chr1_4:5787601-5787620	None:intergenic	25.0%
!!	CGTCGTTATTTCAATTATAT+AGG	+	chr1_4:5787638-5787657	Msa0146060:intron	25.0%
!	ACAGAAGAGATTAATAATAG+AGG	+	chr1_4:5787729-5787748	Msa0146060:CDS	25.0%
!	GTACAAGAGAATTAATTTCA+TGG	+	chr1_4:5788171-5788190	Msa0146060:intron	25.0%
!	AAGAGAATTAATTTCATGGA+TGG	+	chr1_4:5788175-5788194	Msa0146060:intron	25.0%
!!	ATTTTTACAGACTCAAATCA+AGG	+	chr1_4:5788251-5788270	Msa0146060:CDS	25.0%
!	ACAATAGGAGACATTATATA+TGG	+	chr1_4:5788280-5788299	Msa0146060:intron	25.0%
!	ATCAAAATTCACTTCTTCTA+GGG	+	chr1_4:5786968-5786987	Msa0146060:CDS	25.0%
!!	GAGAAATATAGTTAGAGTTT+TGG	-	chr1_4:5787092-5787111	None:intergenic	25.0%
!	TTATTTACTAGTACTTGATC+AGG	-	chr1_4:5787183-5787202	None:intergenic	25.0%
!!	TATATCCAATGATTTTTGCA+TGG	+	chr1_4:5787215-5787234	Msa0146060:CDS	25.0%
!	TTCCATTACAATCTCATTAA+GGG	-	chr1_4:5787271-5787290	None:intergenic	25.0%
!!!	GATCATATTTTGGAGAAAAA+TGG	+	chr1_4:5787327-5787346	Msa0146060:CDS	25.0%
!!	ATTTTGTTGCTAGTAAGATT+AGG	-	chr1_4:5787533-5787552	None:intergenic	25.0%
!	ATAAAATTGATCACCATATC+CGG	-	chr1_4:5787601-5787620	None:intergenic	25.0%
!!	CGTCGTTATTTCAATTATAT+AGG	+	chr1_4:5787638-5787657	Msa0146060:intron	25.0%
!	ACAGAAGAGATTAATAATAG+AGG	+	chr1_4:5787729-5787748	Msa0146060:CDS	25.0%
!	GTACAAGAGAATTAATTTCA+TGG	+	chr1_4:5788171-5788190	Msa0146060:intron	25.0%
!	AAGAGAATTAATTTCATGGA+TGG	+	chr1_4:5788175-5788194	Msa0146060:intron	25.0%
!!	ATTTTTACAGACTCAAATCA+AGG	+	chr1_4:5788251-5788270	Msa0146060:CDS	25.0%
!	ACAATAGGAGACATTATATA+TGG	+	chr1_4:5788280-5788299	Msa0146060:intron	25.0%
	GATCAAAATTCACTTCTTCT+AGG	+	chr1_4:5786967-5786986	Msa0146060:CDS	30.0%
	TCAAAATTCACTTCTTCTAG+GGG	+	chr1_4:5786969-5786988	Msa0146060:CDS	30.0%
!!	GAAAATGATGGATTGAACAA+TGG	+	chr1_4:5786991-5787010	Msa0146060:CDS	30.0%
	ATTACAATCTCATTAAGGGA+TGG	-	chr1_4:5787267-5787286	None:intergenic	30.0%
	ATCCCTTAATGAGATTGTAA+TGG	+	chr1_4:5787266-5787285	Msa0146060:CDS	30.0%
	CTTCCATTACAATCTCATTA+AGG	-	chr1_4:5787272-5787291	None:intergenic	30.0%
!	TGCAAGTGATGATCATATTT+TGG	+	chr1_4:5787317-5787336	Msa0146060:CDS	30.0%
	ATTTCAATTATATAGGGCCA+AGG	+	chr1_4:5787645-5787664	Msa0146060:intron	30.0%
	AATGCTTCTCAAGAAAATAG+TGG	+	chr1_4:5787795-5787814	Msa0146060:CDS	30.0%
	TTACAAAATCTTGTACCGAA+CGG	+	chr1_4:5788055-5788074	Msa0146060:CDS	30.0%
	AATATTACCTTTGTTCCGTT+CGG	-	chr1_4:5788073-5788092	None:intergenic	30.0%
!	TTTTCATGCGACAAATTCAT+TGG	+	chr1_4:5788135-5788154	Msa0146060:intron	30.0%
	TATAAGTACAATGCTTGAAG+AGG	+	chr1_4:5788212-5788231	Msa0146060:CDS	30.0%
	AAATCAAGGTAAAGCACAAT+AGG	+	chr1_4:5788265-5788284	Msa0146060:intron	30.0%
	GATCAAAATTCACTTCTTCT+AGG	+	chr1_4:5786967-5786986	Msa0146060:CDS	30.0%
	TCAAAATTCACTTCTTCTAG+GGG	+	chr1_4:5786969-5786988	Msa0146060:CDS	30.0%
!!	GAAAATGATGGATTGAACAA+TGG	+	chr1_4:5786991-5787010	Msa0146060:CDS	30.0%
	ATTACAATCTCATTAAGGGA+TGG	-	chr1_4:5787267-5787286	None:intergenic	30.0%
	ATCCCTTAATGAGATTGTAA+TGG	+	chr1_4:5787266-5787285	Msa0146060:CDS	30.0%
	CTTCCATTACAATCTCATTA+AGG	-	chr1_4:5787272-5787291	None:intergenic	30.0%
!	TGCAAGTGATGATCATATTT+TGG	+	chr1_4:5787317-5787336	Msa0146060:CDS	30.0%
	ATTTCAATTATATAGGGCCA+AGG	+	chr1_4:5787645-5787664	Msa0146060:intron	30.0%
	AATGCTTCTCAAGAAAATAG+TGG	+	chr1_4:5787795-5787814	Msa0146060:CDS	30.0%
	TTACAAAATCTTGTACCGAA+CGG	+	chr1_4:5788055-5788074	Msa0146060:CDS	30.0%
	AATATTACCTTTGTTCCGTT+CGG	-	chr1_4:5788073-5788092	None:intergenic	30.0%
!	TTTTCATGCGACAAATTCAT+TGG	+	chr1_4:5788135-5788154	Msa0146060:intron	30.0%
	TATAAGTACAATGCTTGAAG+AGG	+	chr1_4:5788212-5788231	Msa0146060:CDS	30.0%
	AAATCAAGGTAAAGCACAAT+AGG	+	chr1_4:5788265-5788284	Msa0146060:intron	30.0%
	AATTTCAGCAGTGCAAAATG+TGG	-	chr1_4:5787025-5787044	None:intergenic	35.0%
!	ACATTTTGCACTGCTGAAAT+TGG	+	chr1_4:5787024-5787043	Msa0146060:CDS	35.0%
	CTCATCCATGCAAAAATCAT+TGG	-	chr1_4:5787223-5787242	None:intergenic	35.0%
	GAAACTTGATGTGATAGAAG+TGG	+	chr1_4:5787419-5787438	Msa0146060:CDS	35.0%
!!!	GAAATGCGAGGTTTTTTCTT+CGG	-	chr1_4:5787486-5787505	None:intergenic	35.0%
!!!	CTTACATCTTTTGAAATGCG+AGG	-	chr1_4:5787498-5787517	None:intergenic	35.0%
	CTAAAAAGCGGAATTAGAGA+CGG	-	chr1_4:5787567-5787586	None:intergenic	35.0%
	GCATCTTCAACACTAAAAAG+CGG	-	chr1_4:5787579-5787598	None:intergenic	35.0%
!!	CTTTTTAGTGTTGAAGATGC+CGG	+	chr1_4:5787579-5787598	Msa0146060:intron	35.0%
!	TTGCAATTTTCATGCATCCT+TGG	-	chr1_4:5787665-5787684	None:intergenic	35.0%
	AAGGATGCATGAAAATTGCA+AGG	+	chr1_4:5787664-5787683	Msa0146060:CDS	35.0%
	GAAAGTTGCTAACAATGAAG+AGG	+	chr1_4:5787701-5787720	Msa0146060:CDS	35.0%
	GAACTACTCTCAACTCAAAT+GGG	+	chr1_4:5787820-5787839	Msa0146060:CDS	35.0%
	TACCCTTGCATATAGACTTT+GGG	-	chr1_4:5787880-5787899	None:intergenic	35.0%
	TTACCCTTGCATATAGACTT+TGG	-	chr1_4:5787881-5787900	None:intergenic	35.0%
	ATTTCATGGATGGTTTATGC+AGG	+	chr1_4:5788185-5788204	Msa0146060:intron	35.0%
!!	TTTTGAGCTCTGATGATATG+TGG	+	chr1_4:5788405-5788424	Msa0146060:CDS	35.0%
	TATGCACCACTTGCTTATAA+TGG	+	chr1_4:5788431-5788450	Msa0146060:CDS	35.0%
	TCAAGTCCATTATAAGCAAG+TGG	-	chr1_4:5788440-5788459	None:intergenic	35.0%
	AATTTCAGCAGTGCAAAATG+TGG	-	chr1_4:5787025-5787044	None:intergenic	35.0%
!	ACATTTTGCACTGCTGAAAT+TGG	+	chr1_4:5787024-5787043	Msa0146060:CDS	35.0%
	CTCATCCATGCAAAAATCAT+TGG	-	chr1_4:5787223-5787242	None:intergenic	35.0%
	GAAACTTGATGTGATAGAAG+TGG	+	chr1_4:5787419-5787438	Msa0146060:CDS	35.0%
!!!	GAAATGCGAGGTTTTTTCTT+CGG	-	chr1_4:5787486-5787505	None:intergenic	35.0%
!!!	CTTACATCTTTTGAAATGCG+AGG	-	chr1_4:5787498-5787517	None:intergenic	35.0%
	CTAAAAAGCGGAATTAGAGA+CGG	-	chr1_4:5787567-5787586	None:intergenic	35.0%
	GCATCTTCAACACTAAAAAG+CGG	-	chr1_4:5787579-5787598	None:intergenic	35.0%
!!	CTTTTTAGTGTTGAAGATGC+CGG	+	chr1_4:5787579-5787598	Msa0146060:intron	35.0%
!	TTGCAATTTTCATGCATCCT+TGG	-	chr1_4:5787665-5787684	None:intergenic	35.0%
	AAGGATGCATGAAAATTGCA+AGG	+	chr1_4:5787664-5787683	Msa0146060:CDS	35.0%
	GAAAGTTGCTAACAATGAAG+AGG	+	chr1_4:5787701-5787720	Msa0146060:CDS	35.0%
	GAACTACTCTCAACTCAAAT+GGG	+	chr1_4:5787820-5787839	Msa0146060:CDS	35.0%
	TACCCTTGCATATAGACTTT+GGG	-	chr1_4:5787880-5787899	None:intergenic	35.0%
	TTACCCTTGCATATAGACTT+TGG	-	chr1_4:5787881-5787900	None:intergenic	35.0%
	ATTTCATGGATGGTTTATGC+AGG	+	chr1_4:5788185-5788204	Msa0146060:intron	35.0%
!!	TTTTGAGCTCTGATGATATG+TGG	+	chr1_4:5788405-5788424	Msa0146060:CDS	35.0%
	TATGCACCACTTGCTTATAA+TGG	+	chr1_4:5788431-5788450	Msa0146060:CDS	35.0%
	TCAAGTCCATTATAAGCAAG+TGG	-	chr1_4:5788440-5788459	None:intergenic	35.0%
	TACTTTCCCTGAAGGAGAAT+GGG	+	chr1_4:5786885-5786904	Msa0146060:CDS	40.0%
	AGAAATCCCATTCTCCTTCA+GGG	-	chr1_4:5786894-5786913	None:intergenic	40.0%
	AAGAAATCCCATTCTCCTTC+AGG	-	chr1_4:5786895-5786914	None:intergenic	40.0%
!	CTTCTTCTAGGGGAAAATGA+TGG	+	chr1_4:5786979-5786998	Msa0146060:CDS	40.0%
	AGTTGCAAATGCAGCTCAAA+AGG	+	chr1_4:5787397-5787416	Msa0146060:CDS	40.0%
	ACTTGATGTGATAGAAGTGG+AGG	+	chr1_4:5787422-5787441	Msa0146060:CDS	40.0%
	CTCTAGTAGCAACATTTCTG+AGG	+	chr1_4:5787767-5787786	Msa0146060:CDS	40.0%
	GCTTCTCAAGAAAATAGTGG+AGG	+	chr1_4:5787798-5787817	Msa0146060:CDS	40.0%
	GGAACTACTCTCAACTCAAA+TGG	+	chr1_4:5787819-5787838	Msa0146060:CDS	40.0%
	ATCCCCAAAGTCTATATGCA+AGG	+	chr1_4:5787874-5787893	Msa0146060:CDS	40.0%
	TCCCCAAAGTCTATATGCAA+GGG	+	chr1_4:5787875-5787894	Msa0146060:CDS	40.0%
	ACCCTTGCATATAGACTTTG+GGG	-	chr1_4:5787879-5787898	None:intergenic	40.0%
!!	GCTTATAATGGACTTGACCT+TGG	+	chr1_4:5788443-5788462	Msa0146060:CDS	40.0%
	ATAGTGGTAGAGAACTGTTG+AGG	-	chr1_4:5788481-5788500	None:intergenic	40.0%
	TACTTTCCCTGAAGGAGAAT+GGG	+	chr1_4:5786885-5786904	Msa0146060:CDS	40.0%
	AGAAATCCCATTCTCCTTCA+GGG	-	chr1_4:5786894-5786913	None:intergenic	40.0%
	AAGAAATCCCATTCTCCTTC+AGG	-	chr1_4:5786895-5786914	None:intergenic	40.0%
!	CTTCTTCTAGGGGAAAATGA+TGG	+	chr1_4:5786979-5786998	Msa0146060:CDS	40.0%
	AGTTGCAAATGCAGCTCAAA+AGG	+	chr1_4:5787397-5787416	Msa0146060:CDS	40.0%
	ACTTGATGTGATAGAAGTGG+AGG	+	chr1_4:5787422-5787441	Msa0146060:CDS	40.0%
	CTCTAGTAGCAACATTTCTG+AGG	+	chr1_4:5787767-5787786	Msa0146060:CDS	40.0%
	GCTTCTCAAGAAAATAGTGG+AGG	+	chr1_4:5787798-5787817	Msa0146060:CDS	40.0%
	GGAACTACTCTCAACTCAAA+TGG	+	chr1_4:5787819-5787838	Msa0146060:CDS	40.0%
	ATCCCCAAAGTCTATATGCA+AGG	+	chr1_4:5787874-5787893	Msa0146060:CDS	40.0%
	TCCCCAAAGTCTATATGCAA+GGG	+	chr1_4:5787875-5787894	Msa0146060:CDS	40.0%
	ACCCTTGCATATAGACTTTG+GGG	-	chr1_4:5787879-5787898	None:intergenic	40.0%
!!	GCTTATAATGGACTTGACCT+TGG	+	chr1_4:5788443-5788462	Msa0146060:CDS	40.0%
	ATAGTGGTAGAGAACTGTTG+AGG	-	chr1_4:5788481-5788500	None:intergenic	40.0%
!!	CCTTCAGGGAAAGTACCTAT+AGG	-	chr1_4:5786880-5786899	None:intergenic	45.0%
	CCTATAGGTACTTTCCCTGA+AGG	+	chr1_4:5786877-5786896	Msa0146060:CDS	45.0%
	GTACTTTCCCTGAAGGAGAA+TGG	+	chr1_4:5786884-5786903	Msa0146060:CDS	45.0%
!!	TGCTTGGTGTGAAGATCAAC+AGG	-	chr1_4:5787375-5787394	None:intergenic	45.0%
	CTGCATTTGCAACTCATGCT+TGG	-	chr1_4:5787391-5787410	None:intergenic	45.0%
!	AGTGTTGAAGATGCCGGATA+TGG	+	chr1_4:5787585-5787604	Msa0146060:intron	45.0%
	TCTTGTACCGAACGGAACAA+AGG	+	chr1_4:5788063-5788082	Msa0146060:CDS	45.0%
	TGAGGTTGAGATTGAGTCCA+AGG	-	chr1_4:5788463-5788482	None:intergenic	45.0%
!!	CCTTCAGGGAAAGTACCTAT+AGG	-	chr1_4:5786880-5786899	None:intergenic	45.0%
	CCTATAGGTACTTTCCCTGA+AGG	+	chr1_4:5786877-5786896	Msa0146060:CDS	45.0%
	GTACTTTCCCTGAAGGAGAA+TGG	+	chr1_4:5786884-5786903	Msa0146060:CDS	45.0%
!!	TGCTTGGTGTGAAGATCAAC+AGG	-	chr1_4:5787375-5787394	None:intergenic	45.0%
	CTGCATTTGCAACTCATGCT+TGG	-	chr1_4:5787391-5787410	None:intergenic	45.0%
!	AGTGTTGAAGATGCCGGATA+TGG	+	chr1_4:5787585-5787604	Msa0146060:intron	45.0%
	TCTTGTACCGAACGGAACAA+AGG	+	chr1_4:5788063-5788082	Msa0146060:CDS	45.0%
	TGAGGTTGAGATTGAGTCCA+AGG	-	chr1_4:5788463-5788482	None:intergenic	45.0%
!!	ATCTTATATTAAAAAAAAAA+AGG	-	chr1_4:5788323-5788342	None:intergenic	5.0%
!!	ATCTTATATTAAAAAAAAAA+AGG	-	chr1_4:5788323-5788342	None:intergenic	5.0%
	GGGAAGACAAGAGCTAGTAG+AGG	+	chr1_4:5787840-5787859	Msa0146060:CDS	50.0%
	GGGAAGACAAGAGCTAGTAG+AGG	+	chr1_4:5787840-5787859	Msa0146060:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	5786871	5788502	5786871	ID=Msa0146060;Name=Msa0146060
chr1_4	mRNA	5786871	5788502	5786871	ID=Msa0146060-mRNA-1;Parent=Msa0146060;Name=Msa0146060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|5\|0\|369
chr1_4	exon	5786871	5787512	5786871	ID=Msa0146060-mRNA-1:exon:2405;Parent=Msa0146060-mRNA-1
chr1_4	exon	5787660	5787896	5787660	ID=Msa0146060-mRNA-1:exon:2406;Parent=Msa0146060-mRNA-1
chr1_4	exon	5788019	5788084	5788019	ID=Msa0146060-mRNA-1:exon:2407;Parent=Msa0146060-mRNA-1
chr1_4	exon	5788207	5788272	5788207	ID=Msa0146060-mRNA-1:exon:2408;Parent=Msa0146060-mRNA-1
chr1_4	exon	5788404	5788502	5788404	ID=Msa0146060-mRNA-1:exon:2409;Parent=Msa0146060-mRNA-1
chr1_4	CDS	5786871	5787512	5786871	ID=Msa0146060-mRNA-1:cds;Parent=Msa0146060-mRNA-1
chr1_4	CDS	5787660	5787896	5787660	ID=Msa0146060-mRNA-1:cds;Parent=Msa0146060-mRNA-1
chr1_4	CDS	5788019	5788084	5788019	ID=Msa0146060-mRNA-1:cds;Parent=Msa0146060-mRNA-1
chr1_4	CDS	5788207	5788272	5788207	ID=Msa0146060-mRNA-1:cds;Parent=Msa0146060-mRNA-1
chr1_4	CDS	5788404	5788502	5788404	ID=Msa0146060-mRNA-1:cds;Parent=Msa0146060-mRNA-1

Gene Sequence

>Msa0146060

ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAAATGATGGATTGAACAATGGAACACAGTCCACATTTTGCACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGTAAATAATATTAATAATTGTATATCCAATGATTTTTGCATGGATGAGAATTTGTTTGCTTCTTCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCAAGTGATGATCATATTTTGGAGAAAAATGGTTATAATACTCAAATAATGGAACCTGTTGATCTTCACACCAAGCATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTGATAGAAGTGGAGGTTCCTGTTGAAGAAAAAATTAACAACAAATCAGAGAATCCGAAGAAAAAACCTCGCATTTCAAAAGATGGCCAAGGATGCATGAAAATTGCAAGGTCAAAGAAGAATAAGAAAGTTGCTAACAATGAAGAGGAGATTACAGAAGAGATTAATAATAGAGGATCAAATGGAAATAGCTCTAGTAGCAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAGTCTTACAAAATCTTGTACCGAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCACTATGA

Protein sequence

>Msa0146060

MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDGLNNGTQSTFCTAEIGENERMFYSFDHAHIQNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLVNNINNCISNDFCMDENLFASSVPSLNEIVMEENVRMNEDSASDDHILEKNGYNTQIMEPVDLHTKHELQMQLKRKLDVIEVEVPVEEKINNKSENPKKKPRISKDGQGCMKIARSKKNKKVANNEEEITEEINNRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL*