Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146690 | XP_003589349.4 | 96.450 | 338 | 9 | 2 | 1 | 335 | 1 | 338 | 0.0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146690 | sp|Q9LQZ5|SRS5_ARATH | 45.179 | 363 | 154 | 12 | 1 | 335 | 1 | 346 | 4.69e-79 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146690 | A0A396JLJ5 | 96.450 | 338 | 9 | 2 | 1 | 335 | 1 | 338 | 0.0 | 666 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0146690 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146690 | MtrunA17_Chr1g0155791 | 96.450 | 338 | 9 | 2 | 1 | 335 | 1 | 338 | 0.0 | 666 |
| Msa0146690 | MtrunA17_Chr3g0142171 | 52.226 | 337 | 109 | 16 | 1 | 332 | 1 | 290 | 5.77e-86 | 261 |
| Msa0146690 | MtrunA17_Chr5g0404781 | 45.763 | 354 | 142 | 13 | 1 | 335 | 1 | 323 | 6.38e-69 | 218 |
| Msa0146690 | MtrunA17_Chr8g0372461 | 42.450 | 351 | 166 | 10 | 1 | 335 | 1 | 331 | 2.39e-68 | 217 |
| Msa0146690 | MtrunA17_Chr5g0441921 | 44.444 | 162 | 83 | 3 | 119 | 273 | 124 | 285 | 8.29e-37 | 135 |
| Msa0146690 | MtrunA17_Chr3g0082511 | 36.279 | 215 | 112 | 6 | 93 | 286 | 107 | 317 | 2.57e-35 | 130 |
| Msa0146690 | MtrunA17_Chr4g0035591 | 41.611 | 149 | 62 | 2 | 116 | 264 | 17 | 140 | 3.43e-34 | 124 |
| Msa0146690 | MtrunA17_Chr8g0353111 | 37.850 | 214 | 106 | 7 | 119 | 318 | 124 | 324 | 1.24e-31 | 121 |
| Msa0146690 | MtrunA17_Chr0c01g0489181 | 59.459 | 37 | 15 | 0 | 117 | 153 | 65 | 101 | 1.68e-13 | 66.2 |
| Msa0146690 | MtrunA17_Chr2g0281741 | 63.158 | 38 | 14 | 0 | 116 | 153 | 147 | 184 | 1.13e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146690 | AT1G75520.1 | 45.179 | 363 | 154 | 12 | 1 | 335 | 1 | 346 | 4.76e-80 | 248 |
| Msa0146690 | AT1G19790.2 | 44.444 | 351 | 171 | 11 | 1 | 334 | 1 | 344 | 2.58e-78 | 243 |
| Msa0146690 | AT1G19790.1 | 44.444 | 351 | 171 | 11 | 1 | 334 | 1 | 344 | 2.58e-78 | 243 |
| Msa0146690 | AT3G51060.1 | 46.129 | 310 | 141 | 8 | 44 | 335 | 69 | 370 | 2.52e-74 | 234 |
| Msa0146690 | AT5G66350.1 | 41.504 | 359 | 158 | 11 | 1 | 335 | 1 | 331 | 1.58e-66 | 213 |
| Msa0146690 | AT5G66350.3 | 41.096 | 365 | 141 | 12 | 1 | 330 | 1 | 326 | 2.64e-64 | 207 |
| Msa0146690 | AT5G66350.2 | 41.092 | 348 | 153 | 11 | 1 | 324 | 1 | 320 | 5.66e-63 | 203 |
| Msa0146690 | AT2G21400.2 | 41.935 | 217 | 84 | 6 | 116 | 329 | 7 | 184 | 9.60e-46 | 154 |
| Msa0146690 | AT2G21400.4 | 41.935 | 217 | 84 | 6 | 116 | 329 | 6 | 183 | 9.62e-46 | 154 |
| Msa0146690 | AT4G36260.1 | 40.948 | 232 | 94 | 8 | 45 | 266 | 48 | 246 | 2.00e-45 | 157 |
| Msa0146690 | AT2G21400.3 | 41.121 | 214 | 75 | 6 | 116 | 329 | 7 | 169 | 7.66e-44 | 149 |
| Msa0146690 | AT2G21400.1 | 41.121 | 214 | 75 | 6 | 116 | 329 | 6 | 168 | 8.27e-44 | 149 |
| Msa0146690 | AT2G18120.1 | 39.738 | 229 | 86 | 6 | 67 | 266 | 1 | 206 | 3.37e-43 | 149 |
| Msa0146690 | AT2G18120.2 | 40.179 | 224 | 90 | 5 | 67 | 266 | 1 | 204 | 8.35e-41 | 142 |
| Msa0146690 | AT5G12330.1 | 45.000 | 160 | 76 | 3 | 119 | 266 | 112 | 271 | 3.51e-36 | 133 |
| Msa0146690 | AT5G12330.2 | 45.000 | 160 | 76 | 3 | 119 | 266 | 112 | 271 | 3.51e-36 | 133 |
| Msa0146690 | AT5G12330.4 | 45.000 | 160 | 76 | 3 | 119 | 266 | 199 | 358 | 4.27e-36 | 135 |
| Msa0146690 | AT5G33210.2 | 61.538 | 91 | 31 | 2 | 117 | 207 | 15 | 101 | 1.24e-30 | 112 |
| Msa0146690 | AT5G33210.1 | 61.538 | 91 | 31 | 2 | 117 | 207 | 50 | 136 | 1.57e-30 | 114 |
| Msa0146690 | AT3G54430.1 | 35.185 | 162 | 81 | 4 | 115 | 272 | 37 | 178 | 1.27e-22 | 93.6 |
| Msa0146690 | AT5G12330.3 | 82.609 | 46 | 8 | 0 | 119 | 164 | 112 | 157 | 4.99e-21 | 90.5 |
Find 71 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATCCCTCTGGAGCTTC+TGG | 0.278538 | 1_4:-6391829 | Msa0146690:CDS |
| TCCGATGAATCAACAAGATT+TGG | 0.294425 | 1_4:-6392123 | Msa0146690:CDS |
| AGCTCCTCTTAATGCTTTCA+TGG | 0.295162 | 1_4:-6390964 | Msa0146690:CDS |
| TGAATTCACCGGCGGTGTTC+AGG | 0.312818 | 1_4:-6391250 | Msa0146690:CDS |
| GGTACGTCTCTTTAGGATCT+TGG | 0.326433 | 1_4:+6390918 | None:intergenic |
| TATATACCTGTGGTAGTAAT+AGG | 0.332609 | 1_4:+6391784 | None:intergenic |
| AGGTCTTCAAGTGGTGGTTT+AGG | 0.350386 | 1_4:-6392087 | Msa0146690:CDS |
| GGTGGTGGCGAGGGTTCTTC+CGG | 0.367254 | 1_4:-6391086 | Msa0146690:CDS |
| CCACCACCAGCAGCAGCATT+TGG | 0.395059 | 1_4:+6391101 | None:intergenic |
| CGTTCGCGGCGTTTAGCAGC+TGG | 0.397352 | 1_4:+6391937 | None:intergenic |
| CCTCTTAATGCTTTCATGGC+TGG | 0.408461 | 1_4:-6390960 | Msa0146690:CDS |
| GTGGACAATCTTTCTTAGCT+TGG | 0.415642 | 1_4:+6392031 | None:intergenic |
| TGAGTTGTTGCTGCCGTTCG+CGG | 0.429437 | 1_4:+6391923 | None:intergenic |
| GGCGAGGGTTCTTCCGGTGG+TGG | 0.430350 | 1_4:-6391080 | Msa0146690:CDS |
| ACCAAATCTTGTTGATTCAT+CGG | 0.431484 | 1_4:+6392122 | None:intergenic |
| CCAAATGCTGCTGCTGGTGG+TGG | 0.431906 | 1_4:-6391101 | Msa0146690:CDS |
| TTGAAATTAGGGTTGGAGTT+GGG | 0.437119 | 1_4:-6391290 | Msa0146690:intron |
| AGTGGTGGTTTAGGTGGTGG+TGG | 0.442865 | 1_4:-6392078 | Msa0146690:CDS |
| GGTTCTTCCGGTGGTGGCAG+CGG | 0.446891 | 1_4:-6391074 | Msa0146690:CDS |
| AAACTCATGTGAAAAGTACT+TGG | 0.464467 | 1_4:-6391963 | Msa0146690:CDS |
| TGCTGCTGCTGGTGGTGGCG+AGG | 0.465038 | 1_4:-6391096 | Msa0146690:CDS |
| TTGTATGATCAAGGACTTGA+AGG | 0.474373 | 1_4:-6391137 | Msa0146690:CDS |
| GAAAATCAAAATGATCCCTC+TGG | 0.474468 | 1_4:-6391838 | Msa0146690:CDS |
| GGCAGCGGTGGCAGTGGCGA+AGG | 0.486928 | 1_4:-6391059 | Msa0146690:CDS |
| TCTTCCGGTGGTGGCAGCGG+TGG | 0.487385 | 1_4:-6391071 | Msa0146690:CDS |
| GCTGCTGCTGGTGGTGGCGA+GGG | 0.489260 | 1_4:-6391095 | Msa0146690:CDS |
| TATAGTGAAGAATACTCAAA+TGG | 0.492700 | 1_4:+6390990 | None:intergenic |
| TCAAGTGGTGGTTTAGGTGG+TGG | 0.495997 | 1_4:-6392081 | Msa0146690:CDS |
| TCTCTTTAGGATCTTGGAGG+TGG | 0.496689 | 1_4:+6390924 | None:intergenic |
| ATGAAAGCATTAAGAGGAGC+TGG | 0.499046 | 1_4:+6390966 | None:intergenic |
| CCTGTGGTAGTAATAGGTAC+TGG | 0.504192 | 1_4:+6391790 | None:intergenic |
| TTCTCTCTAAGCAGTGGAAG+AGG | 0.504749 | 1_4:-6392390 | Msa0146690:CDS |
| ATTGTTAACATTTGTTGTGG+TGG | 0.506186 | 1_4:+6391013 | None:intergenic |
| ACTGCCACCGCTGCCACCAC+CGG | 0.508214 | 1_4:+6391067 | None:intergenic |
| GTGTTACAAAACAACATGGC+TGG | 0.510933 | 1_4:-6392417 | None:intergenic |
| GGTGGTGGCAGCGGTGGCAG+TGG | 0.516306 | 1_4:-6391065 | Msa0146690:CDS |
| TCTTCAAGTGGTGGTTTAGG+TGG | 0.516785 | 1_4:-6392084 | Msa0146690:CDS |
| AGTAATAGGTACTGGAGTAC+AGG | 0.518362 | 1_4:+6391798 | None:intergenic |
| CCAGCCATGAAAGCATTAAG+AGG | 0.523927 | 1_4:+6390960 | None:intergenic |
| TTTGAAATTAGGGTTGGAGT+TGG | 0.534737 | 1_4:-6391291 | Msa0146690:intron |
| ACGTCTCTTTAGGATCTTGG+AGG | 0.540027 | 1_4:+6390921 | None:intergenic |
| ACTGGTCCAAATGCTGCTGC+TGG | 0.540060 | 1_4:-6391107 | Msa0146690:CDS |
| AACGAAGAGATCTACAACAA+AGG | 0.541118 | 1_4:-6392297 | Msa0146690:CDS |
| GGTCCAAATGCTGCTGCTGG+TGG | 0.541152 | 1_4:-6391104 | Msa0146690:CDS |
| GGTTTCTTCTCTCTAAGCAG+TGG | 0.547720 | 1_4:-6392396 | Msa0146690:CDS |
| TTTACACACCTGAACACCGC+CGG | 0.552531 | 1_4:+6391242 | None:intergenic |
| CTCTTTAGGATCTTGGAGGT+GGG | 0.554102 | 1_4:+6390925 | None:intergenic |
| GAAGATTGTTGATGTTGTTG+TGG | 0.555117 | 1_4:+6392261 | None:intergenic |
| TCCACCGGAGCTGAATTCAC+CGG | 0.555263 | 1_4:-6391261 | Msa0146690:CDS |
| GAACTTGTTGCAAGAGTCGA+GGG | 0.557726 | 1_4:-6391996 | Msa0146690:CDS |
| CAGCTGCTAAACGCCGCGAA+CGG | 0.557914 | 1_4:-6391936 | Msa0146690:CDS |
| CCAGTACCTATTACTACCAC+AGG | 0.564967 | 1_4:-6391790 | Msa0146690:intron |
| CAAACTGCTGTGAACATAGG+AGG | 0.565014 | 1_4:-6391179 | Msa0146690:CDS |
| GCCGGTGAATTCAGCTCCGG+TGG | 0.569608 | 1_4:+6391260 | None:intergenic |
| TATCAAACTGCTGTGAACAT+AGG | 0.572121 | 1_4:-6391182 | Msa0146690:CDS |
| GGTGGCGAGGGTTCTTCCGG+TGG | 0.572206 | 1_4:-6391083 | Msa0146690:CDS |
| ACCGCCGGTGAATTCAGCTC+CGG | 0.574562 | 1_4:+6391257 | None:intergenic |
| TAGAGAACCAGAAGCTCCAG+AGG | 0.578477 | 1_4:+6391822 | None:intergenic |
| AACTCATGTGAAAAGTACTT+GGG | 0.591492 | 1_4:-6391962 | Msa0146690:CDS |
| GGACTTGAAGGTAGCTACAC+TGG | 0.595629 | 1_4:-6391125 | Msa0146690:CDS |
| TGGATTGTTAACATTTGTTG+TGG | 0.600855 | 1_4:+6391010 | None:intergenic |
| AGAACTTGTTGCAAGAGTCG+AGG | 0.603647 | 1_4:-6391997 | Msa0146690:CDS |
| GTGATGAGGTCTTCAAGTGG+TGG | 0.621009 | 1_4:-6392093 | Msa0146690:CDS |
| GATTTGGTTTAACAGTGATG+AGG | 0.626557 | 1_4:-6392107 | Msa0146690:CDS |
| CAAGTTCTACATCTAAGATG+TGG | 0.632750 | 1_4:+6392012 | None:intergenic |
| GAAGAAAATAACAACAACAG+TGG | 0.647698 | 1_4:-6392345 | Msa0146690:CDS |
| GGAATGAACTGTCAAGATTG+TGG | 0.658447 | 1_4:-6392057 | Msa0146690:CDS |
| ACCGGAGCTGAATTCACCGG+CGG | 0.668533 | 1_4:-6391258 | Msa0146690:CDS |
| AGAGAACCAGAAGCTCCAGA+GGG | 0.671479 | 1_4:+6391823 | None:intergenic |
| GTGTGTAAAAGTGAGTGCAA+TGG | 0.678715 | 1_4:-6391228 | Msa0146690:CDS |
| ACAGTGATGAGGTCTTCAAG+TGG | 0.705760 | 1_4:-6392096 | Msa0146690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTGATTTGAAATT+AGG | - | chr1_4:6392029-6392048 | Msa0146690:CDS | 10.0% |
| !!! | TTTTATTTGATTTGAAATTA+GGG | - | chr1_4:6392030-6392049 | Msa0146690:CDS | 10.0% |
| !!! | TTTTTATTTGATTTGAAATT+AGG | - | chr1_4:6392029-6392048 | Msa0146690:CDS | 10.0% |
| !!! | TTTTATTTGATTTGAAATTA+GGG | - | chr1_4:6392030-6392049 | Msa0146690:CDS | 10.0% |
| !!! | ATTAACAATTTTTACTCTTT+TGG | - | chr1_4:6391127-6391146 | Msa0146690:CDS | 15.0% |
| !!! | TAATTTTTTGATATATAGCT+AGG | - | chr1_4:6391703-6391722 | Msa0146690:intron | 15.0% |
| !! | ATAGAATATATAGACTAATT+AGG | + | chr1_4:6391817-6391836 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | - | chr1_4:6391995-6392014 | Msa0146690:CDS | 15.0% |
| !!! | ATTAACAATTTTTACTCTTT+TGG | - | chr1_4:6391127-6391146 | Msa0146690:CDS | 15.0% |
| !!! | TAATTTTTTGATATATAGCT+AGG | - | chr1_4:6391703-6391722 | Msa0146690:intron | 15.0% |
| !! | ATAGAATATATAGACTAATT+AGG | + | chr1_4:6391817-6391836 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | - | chr1_4:6391995-6392014 | Msa0146690:CDS | 15.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | - | chr1_4:6391663-6391682 | Msa0146690:intron | 20.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | - | chr1_4:6391664-6391683 | Msa0146690:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | - | chr1_4:6391788-6391807 | Msa0146690:intron | 20.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | - | chr1_4:6391663-6391682 | Msa0146690:intron | 20.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | - | chr1_4:6391664-6391683 | Msa0146690:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | - | chr1_4:6391788-6391807 | Msa0146690:intron | 20.0% |
| !!! | AATTTTTACTCTTTTGGTGT+TGG | - | chr1_4:6391133-6391152 | Msa0146690:CDS | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | + | chr1_4:6391560-6391579 | None:intergenic | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | - | chr1_4:6391911-6391930 | Msa0146690:CDS | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | - | chr1_4:6391918-6391937 | Msa0146690:CDS | 25.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | - | chr1_4:6391970-6391989 | Msa0146690:CDS | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | - | chr1_4:6392034-6392053 | Msa0146690:CDS | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | + | chr1_4:6392344-6392363 | None:intergenic | 25.0% |
| !!! | AATTTTTACTCTTTTGGTGT+TGG | - | chr1_4:6391133-6391152 | Msa0146690:CDS | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | + | chr1_4:6391560-6391579 | None:intergenic | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | - | chr1_4:6391911-6391930 | Msa0146690:CDS | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | - | chr1_4:6391918-6391937 | Msa0146690:CDS | 25.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | - | chr1_4:6391970-6391989 | Msa0146690:CDS | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | - | chr1_4:6392034-6392053 | Msa0146690:CDS | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | + | chr1_4:6392344-6392363 | None:intergenic | 25.0% |
| GAAGAAAATAACAACAACAG+TGG | - | chr1_4:6390986-6391005 | Msa0146690:CDS | 30.0% | |
| !!! | ACAACAAAGGTTTTGAGATA+TGG | - | chr1_4:6391047-6391066 | Msa0146690:CDS | 30.0% |
| !! | ACCAAATCTTGTTGATTCAT+CGG | + | chr1_4:6391212-6391231 | None:intergenic | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | - | chr1_4:6391368-6391387 | Msa0146690:intron | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | - | chr1_4:6391369-6391388 | Msa0146690:intron | 30.0% |
| TATATACCTGTGGTAGTAAT+AGG | + | chr1_4:6391550-6391569 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | + | chr1_4:6391844-6391863 | None:intergenic | 30.0% | |
| !! | CTAAGTTGATAGAGTATGAA+AGG | + | chr1_4:6391849-6391868 | None:intergenic | 30.0% |
| ! | TTCTCTTTCTTTTCTTCTGA+AGG | - | chr1_4:6391894-6391913 | Msa0146690:CDS | 30.0% |
| ! | AAGGGAATTTTGTATGATCA+AGG | - | chr1_4:6392185-6392204 | Msa0146690:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTGG+TGG | + | chr1_4:6392321-6392340 | None:intergenic | 30.0% |
| ! | TGGATTGTTAACATTTGTTG+TGG | + | chr1_4:6392324-6392343 | None:intergenic | 30.0% |
| GAAGAAAATAACAACAACAG+TGG | - | chr1_4:6390986-6391005 | Msa0146690:CDS | 30.0% | |
| !!! | ACAACAAAGGTTTTGAGATA+TGG | - | chr1_4:6391047-6391066 | Msa0146690:CDS | 30.0% |
| !! | ACCAAATCTTGTTGATTCAT+CGG | + | chr1_4:6391212-6391231 | None:intergenic | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | - | chr1_4:6391368-6391387 | Msa0146690:intron | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | - | chr1_4:6391369-6391388 | Msa0146690:intron | 30.0% |
| TATATACCTGTGGTAGTAAT+AGG | + | chr1_4:6391550-6391569 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | + | chr1_4:6391844-6391863 | None:intergenic | 30.0% | |
| !! | CTAAGTTGATAGAGTATGAA+AGG | + | chr1_4:6391849-6391868 | None:intergenic | 30.0% |
| ! | TTCTCTTTCTTTTCTTCTGA+AGG | - | chr1_4:6391894-6391913 | Msa0146690:CDS | 30.0% |
| ! | AAGGGAATTTTGTATGATCA+AGG | - | chr1_4:6392185-6392204 | Msa0146690:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTGG+TGG | + | chr1_4:6392321-6392340 | None:intergenic | 30.0% |
| ! | TGGATTGTTAACATTTGTTG+TGG | + | chr1_4:6392324-6392343 | None:intergenic | 30.0% |
| AACGAAGAGATCTACAACAA+AGG | - | chr1_4:6391034-6391053 | Msa0146690:CDS | 35.0% | |
| GAAGATTGTTGATGTTGTTG+TGG | + | chr1_4:6391073-6391092 | None:intergenic | 35.0% | |
| TCCGATGAATCAACAAGATT+TGG | - | chr1_4:6391208-6391227 | Msa0146690:CDS | 35.0% | |
| ! | GATTTGGTTTAACAGTGATG+AGG | - | chr1_4:6391224-6391243 | Msa0146690:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | + | chr1_4:6391322-6391341 | None:intergenic | 35.0% |
| GAAAATCAAAATGATCCCTC+TGG | - | chr1_4:6391493-6391512 | Msa0146690:intron | 35.0% | |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | - | chr1_4:6392040-6392059 | Msa0146690:CDS | 35.0% |
| TTGAAATTAGGGTTGGAGTT+GGG | - | chr1_4:6392041-6392060 | Msa0146690:CDS | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | - | chr1_4:6392149-6392168 | Msa0146690:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | - | chr1_4:6392167-6392186 | Msa0146690:CDS | 35.0% |
| TTGTATGATCAAGGACTTGA+AGG | - | chr1_4:6392194-6392213 | Msa0146690:CDS | 35.0% | |
| AACGAAGAGATCTACAACAA+AGG | - | chr1_4:6391034-6391053 | Msa0146690:CDS | 35.0% | |
| GAAGATTGTTGATGTTGTTG+TGG | + | chr1_4:6391073-6391092 | None:intergenic | 35.0% | |
| TCCGATGAATCAACAAGATT+TGG | - | chr1_4:6391208-6391227 | Msa0146690:CDS | 35.0% | |
| ! | GATTTGGTTTAACAGTGATG+AGG | - | chr1_4:6391224-6391243 | Msa0146690:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | + | chr1_4:6391322-6391341 | None:intergenic | 35.0% |
| GAAAATCAAAATGATCCCTC+TGG | - | chr1_4:6391493-6391512 | Msa0146690:intron | 35.0% | |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | - | chr1_4:6392040-6392059 | Msa0146690:CDS | 35.0% |
| TTGAAATTAGGGTTGGAGTT+GGG | - | chr1_4:6392041-6392060 | Msa0146690:CDS | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | - | chr1_4:6392149-6392168 | Msa0146690:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | - | chr1_4:6392167-6392186 | Msa0146690:CDS | 35.0% |
| TTGTATGATCAAGGACTTGA+AGG | - | chr1_4:6392194-6392213 | Msa0146690:CDS | 35.0% | |
| GGAATGAACTGTCAAGATTG+TGG | - | chr1_4:6391274-6391293 | Msa0146690:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | + | chr1_4:6391303-6391322 | None:intergenic | 40.0% | |
| !! | AGTAATAGGTACTGGAGTAC+AGG | + | chr1_4:6391536-6391555 | None:intergenic | 40.0% |
| GTGTGTAAAAGTGAGTGCAA+TGG | - | chr1_4:6392103-6392122 | Msa0146690:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | - | chr1_4:6392166-6392185 | Msa0146690:CDS | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | + | chr1_4:6392368-6392387 | None:intergenic | 40.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | - | chr1_4:6392367-6392386 | Msa0146690:CDS | 40.0% | |
| GGAATGAACTGTCAAGATTG+TGG | - | chr1_4:6391274-6391293 | Msa0146690:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | + | chr1_4:6391303-6391322 | None:intergenic | 40.0% | |
| !! | AGTAATAGGTACTGGAGTAC+AGG | + | chr1_4:6391536-6391555 | None:intergenic | 40.0% |
| GTGTGTAAAAGTGAGTGCAA+TGG | - | chr1_4:6392103-6392122 | Msa0146690:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | - | chr1_4:6392166-6392185 | Msa0146690:CDS | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | + | chr1_4:6392368-6392387 | None:intergenic | 40.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | - | chr1_4:6392367-6392386 | Msa0146690:CDS | 40.0% | |
| GGTTTCTTCTCTCTAAGCAG+TGG | - | chr1_4:6390935-6390954 | Msa0146690:CDS | 45.0% | |
| TTCTCTCTAAGCAGTGGAAG+AGG | - | chr1_4:6390941-6390960 | Msa0146690:CDS | 45.0% | |
| ACAGTGATGAGGTCTTCAAG+TGG | - | chr1_4:6391235-6391254 | Msa0146690:CDS | 45.0% | |
| AGGTCTTCAAGTGGTGGTTT+AGG | - | chr1_4:6391244-6391263 | Msa0146690:CDS | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | - | chr1_4:6391247-6391266 | Msa0146690:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | - | chr1_4:6391334-6391353 | Msa0146690:intron | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | - | chr1_4:6391335-6391354 | Msa0146690:intron | 45.0% |
| CCTGTGGTAGTAATAGGTAC+TGG | + | chr1_4:6391544-6391563 | None:intergenic | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | - | chr1_4:6391541-6391560 | Msa0146690:intron | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | - | chr1_4:6391752-6391771 | Msa0146690:intron | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | - | chr1_4:6392055-6392074 | Msa0146690:CDS | 45.0% |
| CAAACTGCTGTGAACATAGG+AGG | - | chr1_4:6392152-6392171 | Msa0146690:CDS | 45.0% | |
| !! | CCAGCCATGAAAGCATTAAG+AGG | + | chr1_4:6392374-6392393 | None:intergenic | 45.0% |
| CCTCTTAATGCTTTCATGGC+TGG | - | chr1_4:6392371-6392390 | Msa0146690:CDS | 45.0% | |
| GGTTTCTTCTCTCTAAGCAG+TGG | - | chr1_4:6390935-6390954 | Msa0146690:CDS | 45.0% | |
| TTCTCTCTAAGCAGTGGAAG+AGG | - | chr1_4:6390941-6390960 | Msa0146690:CDS | 45.0% | |
| ACAGTGATGAGGTCTTCAAG+TGG | - | chr1_4:6391235-6391254 | Msa0146690:CDS | 45.0% | |
| AGGTCTTCAAGTGGTGGTTT+AGG | - | chr1_4:6391244-6391263 | Msa0146690:CDS | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | - | chr1_4:6391247-6391266 | Msa0146690:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | - | chr1_4:6391334-6391353 | Msa0146690:intron | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | - | chr1_4:6391335-6391354 | Msa0146690:intron | 45.0% |
| CCTGTGGTAGTAATAGGTAC+TGG | + | chr1_4:6391544-6391563 | None:intergenic | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | - | chr1_4:6391541-6391560 | Msa0146690:intron | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | - | chr1_4:6391752-6391771 | Msa0146690:intron | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | - | chr1_4:6392055-6392074 | Msa0146690:CDS | 45.0% |
| CAAACTGCTGTGAACATAGG+AGG | - | chr1_4:6392152-6392171 | Msa0146690:CDS | 45.0% | |
| !! | CCAGCCATGAAAGCATTAAG+AGG | + | chr1_4:6392374-6392393 | None:intergenic | 45.0% |
| CCTCTTAATGCTTTCATGGC+TGG | - | chr1_4:6392371-6392390 | Msa0146690:CDS | 45.0% | |
| GTGATGAGGTCTTCAAGTGG+TGG | - | chr1_4:6391238-6391257 | Msa0146690:CDS | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | - | chr1_4:6391250-6391269 | Msa0146690:CDS | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | - | chr1_4:6391502-6391521 | Msa0146690:intron | 50.0% |
| AGAGAACCAGAAGCTCCAGA+GGG | + | chr1_4:6391511-6391530 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | + | chr1_4:6391512-6391531 | None:intergenic | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | + | chr1_4:6392092-6392111 | None:intergenic | 50.0% | |
| GGACTTGAAGGTAGCTACAC+TGG | - | chr1_4:6392206-6392225 | Msa0146690:CDS | 50.0% | |
| GTGATGAGGTCTTCAAGTGG+TGG | - | chr1_4:6391238-6391257 | Msa0146690:CDS | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | - | chr1_4:6391250-6391269 | Msa0146690:CDS | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | - | chr1_4:6391502-6391521 | Msa0146690:intron | 50.0% |
| AGAGAACCAGAAGCTCCAGA+GGG | + | chr1_4:6391511-6391530 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | + | chr1_4:6391512-6391531 | None:intergenic | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | + | chr1_4:6392092-6392111 | None:intergenic | 50.0% | |
| GGACTTGAAGGTAGCTACAC+TGG | - | chr1_4:6392206-6392225 | Msa0146690:CDS | 50.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | - | chr1_4:6391253-6391272 | Msa0146690:CDS | 55.0% |
| TGAGTTGTTGCTGCCGTTCG+CGG | + | chr1_4:6391411-6391430 | None:intergenic | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | - | chr1_4:6392070-6392089 | Msa0146690:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | - | chr1_4:6392081-6392100 | Msa0146690:CDS | 55.0% | |
| ACTGGTCCAAATGCTGCTGC+TGG | - | chr1_4:6392224-6392243 | Msa0146690:CDS | 55.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | - | chr1_4:6391253-6391272 | Msa0146690:CDS | 55.0% |
| TGAGTTGTTGCTGCCGTTCG+CGG | + | chr1_4:6391411-6391430 | None:intergenic | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | - | chr1_4:6392070-6392089 | Msa0146690:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | - | chr1_4:6392081-6392100 | Msa0146690:CDS | 55.0% | |
| ACTGGTCCAAATGCTGCTGC+TGG | - | chr1_4:6392224-6392243 | Msa0146690:CDS | 55.0% | |
| CAGCTGCTAAACGCCGCGAA+CGG | - | chr1_4:6391395-6391414 | Msa0146690:intron | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | - | chr1_4:6392073-6392092 | Msa0146690:CDS | 60.0% | |
| ACCGCCGGTGAATTCAGCTC+CGG | + | chr1_4:6392077-6392096 | None:intergenic | 60.0% | |
| GGTCCAAATGCTGCTGCTGG+TGG | - | chr1_4:6392227-6392246 | Msa0146690:CDS | 60.0% | |
| CCACCACCAGCAGCAGCATT+TGG | + | chr1_4:6392233-6392252 | None:intergenic | 60.0% | |
| CCAAATGCTGCTGCTGGTGG+TGG | - | chr1_4:6392230-6392249 | Msa0146690:CDS | 60.0% | |
| CAGCTGCTAAACGCCGCGAA+CGG | - | chr1_4:6391395-6391414 | Msa0146690:intron | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | - | chr1_4:6392073-6392092 | Msa0146690:CDS | 60.0% | |
| ACCGCCGGTGAATTCAGCTC+CGG | + | chr1_4:6392077-6392096 | None:intergenic | 60.0% | |
| GGTCCAAATGCTGCTGCTGG+TGG | - | chr1_4:6392227-6392246 | Msa0146690:CDS | 60.0% | |
| CCACCACCAGCAGCAGCATT+TGG | + | chr1_4:6392233-6392252 | None:intergenic | 60.0% | |
| CCAAATGCTGCTGCTGGTGG+TGG | - | chr1_4:6392230-6392249 | Msa0146690:CDS | 60.0% | |
| CGTTCGCGGCGTTTAGCAGC+TGG | + | chr1_4:6391397-6391416 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | + | chr1_4:6392074-6392093 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | - | chr1_4:6392245-6392264 | Msa0146690:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | - | chr1_4:6392257-6392276 | Msa0146690:CDS | 65.0% |
| CGTTCGCGGCGTTTAGCAGC+TGG | + | chr1_4:6391397-6391416 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | + | chr1_4:6392074-6392093 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | - | chr1_4:6392245-6392264 | Msa0146690:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | - | chr1_4:6392257-6392276 | Msa0146690:CDS | 65.0% |
| !! | TGCTGCTGCTGGTGGTGGCG+AGG | - | chr1_4:6392235-6392254 | Msa0146690:CDS | 70.0% |
| !! | GCTGCTGCTGGTGGTGGCGA+GGG | - | chr1_4:6392236-6392255 | Msa0146690:CDS | 70.0% |
| GGTGGCGAGGGTTCTTCCGG+TGG | - | chr1_4:6392248-6392267 | Msa0146690:CDS | 70.0% | |
| GGCGAGGGTTCTTCCGGTGG+TGG | - | chr1_4:6392251-6392270 | Msa0146690:CDS | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | - | chr1_4:6392260-6392279 | Msa0146690:CDS | 70.0% |
| ACTGCCACCGCTGCCACCAC+CGG | + | chr1_4:6392267-6392286 | None:intergenic | 70.0% | |
| !! | TGCTGCTGCTGGTGGTGGCG+AGG | - | chr1_4:6392235-6392254 | Msa0146690:CDS | 70.0% |
| !! | GCTGCTGCTGGTGGTGGCGA+GGG | - | chr1_4:6392236-6392255 | Msa0146690:CDS | 70.0% |
| GGTGGCGAGGGTTCTTCCGG+TGG | - | chr1_4:6392248-6392267 | Msa0146690:CDS | 70.0% | |
| GGCGAGGGTTCTTCCGGTGG+TGG | - | chr1_4:6392251-6392270 | Msa0146690:CDS | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | - | chr1_4:6392260-6392279 | Msa0146690:CDS | 70.0% |
| ACTGCCACCGCTGCCACCAC+CGG | + | chr1_4:6392267-6392286 | None:intergenic | 70.0% | |
| ! | GGTGGTGGCAGCGGTGGCAG+TGG | - | chr1_4:6392266-6392285 | Msa0146690:CDS | 75.0% |
| GGCAGCGGTGGCAGTGGCGA+AGG | - | chr1_4:6392272-6392291 | Msa0146690:CDS | 75.0% | |
| ! | GGTGGTGGCAGCGGTGGCAG+TGG | - | chr1_4:6392266-6392285 | Msa0146690:CDS | 75.0% |
| GGCAGCGGTGGCAGTGGCGA+AGG | - | chr1_4:6392272-6392291 | Msa0146690:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6390929 | 6392424 | 6390929 | ID=Msa0146690;Name=Msa0146690 |
| chr1_4 | mRNA | 6390929 | 6392424 | 6390929 | ID=Msa0146690-mRNA-1;Parent=Msa0146690;Name=Msa0146690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0|1|1|1|2|0|335 |
| chr1_4 | exon | 6391791 | 6392424 | 6391791 | ID=Msa0146690-mRNA-1:exon:2827;Parent=Msa0146690-mRNA-1 |
| chr1_4 | exon | 6390929 | 6391302 | 6390929 | ID=Msa0146690-mRNA-1:exon:2826;Parent=Msa0146690-mRNA-1 |
| chr1_4 | CDS | 6391791 | 6392424 | 6391791 | ID=Msa0146690-mRNA-1:cds;Parent=Msa0146690-mRNA-1 |
| chr1_4 | CDS | 6390929 | 6391302 | 6390929 | ID=Msa0146690-mRNA-1:cds;Parent=Msa0146690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
