Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146710 | sp|Q9LQZ7|BBX21_ARATH | 43.188 | 345 | 127 | 13 | 1 | 290 | 1 | 331 | 6.99e-70 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146710 | B7FII1 | 90.690 | 290 | 10 | 2 | 1 | 290 | 1 | 273 | 1.04e-176 | 498 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0146710 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146710 | MtrunA17_Chr1g0155811 | 90.690 | 290 | 10 | 2 | 1 | 290 | 1 | 273 | 1.99e-180 | 498 |
| Msa0146710 | MtrunA17_Chr3g0142221 | 45.161 | 279 | 93 | 9 | 1 | 278 | 1 | 220 | 6.93e-64 | 200 |
| Msa0146710 | MtrunA17_Chr3g0145061 | 48.276 | 203 | 94 | 3 | 1 | 192 | 1 | 203 | 4.83e-60 | 191 |
| Msa0146710 | MtrunA17_Chr4g0035651 | 50.820 | 183 | 83 | 2 | 1 | 178 | 1 | 181 | 5.71e-60 | 190 |
| Msa0146710 | MtrunA17_Chr4g0033641 | 35.125 | 279 | 141 | 8 | 1 | 278 | 1 | 240 | 7.12e-41 | 142 |
| Msa0146710 | MtrunA17_Chr2g0314671 | 39.175 | 194 | 92 | 4 | 1 | 171 | 1 | 191 | 2.04e-37 | 134 |
| Msa0146710 | MtrunA17_Chr2g0329511 | 42.775 | 173 | 78 | 3 | 1 | 173 | 1 | 152 | 2.14e-37 | 132 |
| Msa0146710 | MtrunA17_Chr5g0405151 | 34.503 | 171 | 98 | 4 | 1 | 161 | 1 | 167 | 5.41e-24 | 95.9 |
| Msa0146710 | MtrunA17_Chr1g0150471 | 46.392 | 97 | 42 | 1 | 5 | 101 | 6 | 92 | 2.91e-23 | 97.1 |
| Msa0146710 | MtrunA17_Chr4g0072871 | 45.161 | 93 | 41 | 1 | 5 | 97 | 22 | 104 | 2.38e-20 | 89.7 |
| Msa0146710 | MtrunA17_Chr3g0136701 | 41.818 | 110 | 54 | 1 | 5 | 114 | 6 | 105 | 6.29e-19 | 84.7 |
| Msa0146710 | MtrunA17_Chr7g0220721 | 41.935 | 93 | 44 | 1 | 5 | 97 | 26 | 108 | 8.27e-18 | 82.8 |
| Msa0146710 | MtrunA17_Chr7g0268691 | 37.755 | 98 | 50 | 3 | 5 | 102 | 20 | 106 | 3.32e-13 | 69.3 |
| Msa0146710 | MtrunA17_Chr5g0429341 | 32.990 | 97 | 55 | 1 | 1 | 97 | 1 | 87 | 1.15e-12 | 67.8 |
| Msa0146710 | MtrunA17_Chr3g0120711 | 34.021 | 97 | 53 | 2 | 1 | 97 | 1 | 86 | 4.96e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146710 | AT1G75540.1 | 43.188 | 345 | 127 | 13 | 1 | 290 | 1 | 331 | 7.11e-71 | 222 |
| Msa0146710 | AT4G39070.1 | 49.261 | 203 | 76 | 3 | 1 | 176 | 1 | 203 | 1.14e-51 | 170 |
| Msa0146710 | AT1G06040.1 | 37.801 | 291 | 125 | 13 | 1 | 278 | 1 | 248 | 2.30e-41 | 143 |
| Msa0146710 | AT1G06040.2 | 44.199 | 181 | 79 | 4 | 1 | 177 | 1 | 163 | 4.57e-40 | 138 |
| Msa0146710 | AT2G31380.1 | 33.935 | 277 | 143 | 8 | 1 | 277 | 1 | 237 | 8.29e-38 | 134 |
| Msa0146710 | AT1G78600.1 | 36.364 | 220 | 128 | 6 | 1 | 219 | 1 | 209 | 1.34e-36 | 132 |
| Msa0146710 | AT1G78600.2 | 36.364 | 220 | 128 | 6 | 1 | 219 | 1 | 209 | 1.65e-36 | 132 |
| Msa0146710 | AT4G10240.1 | 49.612 | 129 | 52 | 3 | 1 | 120 | 1 | 125 | 2.85e-35 | 125 |
| Msa0146710 | AT2G24790.1 | 43.750 | 112 | 53 | 1 | 5 | 116 | 8 | 109 | 7.81e-23 | 95.9 |
| Msa0146710 | AT4G38960.1 | 46.226 | 106 | 53 | 2 | 1 | 106 | 1 | 102 | 8.31e-23 | 93.2 |
| Msa0146710 | AT4G38960.6 | 46.226 | 106 | 53 | 2 | 1 | 106 | 1 | 102 | 8.31e-23 | 93.2 |
| Msa0146710 | AT2G24790.2 | 43.750 | 112 | 53 | 1 | 5 | 116 | 8 | 109 | 1.00e-22 | 94.0 |
| Msa0146710 | AT2G21320.1 | 34.756 | 164 | 88 | 3 | 1 | 149 | 1 | 160 | 1.52e-22 | 92.0 |
| Msa0146710 | AT5G24930.1 | 43.299 | 97 | 45 | 1 | 5 | 101 | 6 | 92 | 2.55e-20 | 90.1 |
| Msa0146710 | AT5G15840.1 | 34.459 | 148 | 74 | 3 | 5 | 152 | 20 | 144 | 8.94e-19 | 85.9 |
| Msa0146710 | AT5G15840.2 | 34.459 | 148 | 74 | 3 | 5 | 152 | 20 | 144 | 2.14e-18 | 83.2 |
| Msa0146710 | AT3G02380.1 | 38.333 | 120 | 58 | 2 | 5 | 124 | 16 | 119 | 6.44e-18 | 83.2 |
| Msa0146710 | AT5G15850.1 | 34.400 | 125 | 72 | 1 | 5 | 129 | 12 | 126 | 1.91e-17 | 81.6 |
| Msa0146710 | AT5G57660.1 | 32.117 | 137 | 73 | 4 | 5 | 141 | 22 | 138 | 5.86e-15 | 74.7 |
| Msa0146710 | AT1G28050.1 | 36.634 | 101 | 54 | 1 | 2 | 102 | 6 | 96 | 1.35e-13 | 70.9 |
| Msa0146710 | AT2G33500.1 | 35.000 | 100 | 55 | 1 | 3 | 102 | 10 | 99 | 4.46e-13 | 69.3 |
| Msa0146710 | AT2G33500.2 | 35.000 | 100 | 55 | 1 | 3 | 102 | 10 | 99 | 4.88e-13 | 69.3 |
| Msa0146710 | AT2G47890.3 | 40.000 | 85 | 41 | 2 | 5 | 89 | 13 | 87 | 7.56e-12 | 65.1 |
| Msa0146710 | AT2G47890.1 | 40.000 | 85 | 41 | 2 | 5 | 89 | 13 | 87 | 9.40e-12 | 65.1 |
| Msa0146710 | AT2G47890.2 | 40.000 | 85 | 41 | 2 | 5 | 89 | 13 | 87 | 9.92e-12 | 63.9 |
| Msa0146710 | AT3G07650.3 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 7.13e-11 | 62.8 |
| Msa0146710 | AT3G07650.2 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 7.13e-11 | 62.8 |
| Msa0146710 | AT3G07650.4 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 7.13e-11 | 62.8 |
| Msa0146710 | AT3G07650.1 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 7.13e-11 | 62.8 |
Find 66 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGATCCCCATATTATTAT+TGG | 0.137675 | 1_4:-6480090 | None:intergenic |
| ATTCTTTCCCAATAATAATA+TGG | 0.175250 | 1_4:+6480082 | Msa0146710:CDS |
| TCGGACCGCTTTGTAGATTA+TGG | 0.291781 | 1_4:-6479923 | None:intergenic |
| GTTCTCTTGGAATTGGTAAC+AGG | 0.317083 | 1_4:-6480278 | None:intergenic |
| TTCTTTCCCAATAATAATAT+GGG | 0.326545 | 1_4:+6480083 | Msa0146710:CDS |
| ATATCTTGTTCTCTTGGAAT+TGG | 0.326830 | 1_4:-6480285 | None:intergenic |
| GAGGGTGTTGTTTAGGAGTT+GGG | 0.330083 | 1_4:-6479222 | None:intergenic |
| TACTCCTTCACCAACATCTA+TGG | 0.332309 | 1_4:+6479620 | Msa0146710:CDS |
| CAGATCCCCATATTATTATT+GGG | 0.334863 | 1_4:-6480089 | None:intergenic |
| AGAGGGTGTTGTTTAGGAGT+TGG | 0.337165 | 1_4:-6479223 | None:intergenic |
| CCAATAATAATATGGGGATC+TGG | 0.340677 | 1_4:+6480090 | Msa0146710:CDS |
| AAGAGAGAGACGGTGGTGTT+TGG | 0.342293 | 1_4:-6479194 | None:intergenic |
| TCGCAGAGAGGGTGTTGTTT+AGG | 0.344263 | 1_4:-6479229 | None:intergenic |
| CCATAGATATCTTGTTCTCT+TGG | 0.347739 | 1_4:-6480291 | None:intergenic |
| CCAAGAGAACAAGATATCTA+TGG | 0.390568 | 1_4:+6480291 | Msa0146710:CDS |
| AAAATCATCAACTTGCCAAC+CGG | 0.412069 | 1_4:-6479694 | None:intergenic |
| TTCATCTTCACAAATAATGA+TGG | 0.443338 | 1_4:+6480142 | Msa0146710:CDS |
| ACAAATCAAGGTTGAGGTTG+AGG | 0.454986 | 1_4:+6480213 | Msa0146710:CDS |
| CCCTCTCTGCGATATTTGTC+AGG | 0.457199 | 1_4:+6479240 | Msa0146710:CDS |
| TGTTCCCTTTGCTTTCTCCA+AGG | 0.478253 | 1_4:+6479731 | Msa0146710:CDS |
| CAATAATAATATGGGGATCT+GGG | 0.478272 | 1_4:+6480091 | Msa0146710:CDS |
| GGTGATGAATTGTTTAATGT+TGG | 0.482718 | 1_4:+6480038 | Msa0146710:CDS |
| GTGTTTGGAAGCTAGTTTGT+TGG | 0.489476 | 1_4:-6479179 | None:intergenic |
| CAAATCAAGGTTGAGGTTGA+GGG | 0.494528 | 1_4:+6480214 | Msa0146710:CDS |
| CATGATAGGTTTCTTCTCAC+TGG | 0.500831 | 1_4:+6479486 | Msa0146710:CDS |
| GATACATAAGGCGGCTTCAT+CGG | 0.502006 | 1_4:-6479131 | None:intergenic |
| CTTCCTTCTTCCATAGATGT+TGG | 0.505484 | 1_4:-6479630 | None:intergenic |
| AACTTACACAGAAACATGAT+AGG | 0.518542 | 1_4:+6479472 | Msa0146710:CDS |
| TCATCTTCACAAATAATGAT+GGG | 0.520250 | 1_4:+6480143 | Msa0146710:CDS |
| AAAGCAGCATCAACAAATCA+AGG | 0.524782 | 1_4:+6480201 | Msa0146710:CDS |
| CAGAGTGAGACAACAAAGAA+GGG | 0.529375 | 1_4:+6480167 | Msa0146710:CDS |
| GCAGAGTGAGACAACAAAGA+AGG | 0.531335 | 1_4:+6480166 | Msa0146710:CDS |
| GACTTGGCAGTAGCTGAAGA+AGG | 0.535465 | 1_4:-6479558 | None:intergenic |
| AGAAGGAACAAGATTTGACT+TGG | 0.537330 | 1_4:-6479574 | None:intergenic |
| AGAGAAGGTGGTGGTGCTTG+AGG | 0.542822 | 1_4:-6480116 | None:intergenic |
| TCACCAACATCTATGGAAGA+AGG | 0.545672 | 1_4:+6479627 | Msa0146710:CDS |
| GTTTGTTGGCGTGGTGGACA+CGG | 0.547515 | 1_4:-6479165 | None:intergenic |
| AAAACCTTGGAGAAAGCAAA+GGG | 0.550319 | 1_4:-6479735 | None:intergenic |
| AAATCATCAACTTGCCAACC+GGG | 0.556383 | 1_4:-6479693 | None:intergenic |
| GTGGTCGCAGTCGATACATA+AGG | 0.557663 | 1_4:-6479143 | None:intergenic |
| GAAAACCTTGGAGAAAGCAA+AGG | 0.575554 | 1_4:-6479736 | None:intergenic |
| TGATTGAAACTCTACCCGGT+TGG | 0.584818 | 1_4:+6479679 | Msa0146710:CDS |
| GCATCAACAAATCAAGGTTG+AGG | 0.588705 | 1_4:+6480207 | Msa0146710:CDS |
| TACTTGATTGAAACTCTACC+CGG | 0.593207 | 1_4:+6479675 | Msa0146710:CDS |
| ACATCTATGGAAGAAGGAAG+TGG | 0.599359 | 1_4:+6479633 | Msa0146710:CDS |
| TGTGAAGATGAATATAGAGA+AGG | 0.600444 | 1_4:-6480131 | None:intergenic |
| GAAGATGAATATAGAGAAGG+TGG | 0.603622 | 1_4:-6480128 | None:intergenic |
| TTGGGTTATGAAGAGAGAGA+CGG | 0.603803 | 1_4:-6479204 | None:intergenic |
| TCTTCCATAGATGTTGGTGA+AGG | 0.607403 | 1_4:-6479624 | None:intergenic |
| AAATTCAGCTAATACAGCCT+CGG | 0.614001 | 1_4:+6479897 | Msa0146710:CDS |
| CCTGACAAATATCGCAGAGA+GGG | 0.617757 | 1_4:-6479240 | None:intergenic |
| TCTTTCCCAATAATAATATG+GGG | 0.620377 | 1_4:+6480084 | Msa0146710:CDS |
| TGGAAGCTAGTTTGTTGGCG+TGG | 0.623271 | 1_4:-6479174 | None:intergenic |
| ACATAAGGCGGCTTCATCGG+CGG | 0.633059 | 1_4:-6479128 | None:intergenic |
| AAGCTAGTTTGTTGGCGTGG+TGG | 0.634687 | 1_4:-6479171 | None:intergenic |
| TTTGTAGATTATGGCGACCG+AGG | 0.641272 | 1_4:-6479914 | None:intergenic |
| TTGGTAACAGGACTAATCTG+TGG | 0.644385 | 1_4:-6480266 | None:intergenic |
| GGTTATGAAGAGAGAGACGG+TGG | 0.649053 | 1_4:-6479201 | None:intergenic |
| CATCTTCACAAATAATGATG+GGG | 0.650089 | 1_4:+6480144 | Msa0146710:CDS |
| GATGAATATAGAGAAGGTGG+TGG | 0.651333 | 1_4:-6480125 | None:intergenic |
| TCTATGGAAGAAGGAAGTGG+TGG | 0.656402 | 1_4:+6479636 | Msa0146710:CDS |
| AGAGTGAGACAACAAAGAAG+GGG | 0.664318 | 1_4:+6480168 | Msa0146710:CDS |
| ACCTGACAAATATCGCAGAG+AGG | 0.707817 | 1_4:-6479241 | None:intergenic |
| GTCGCAGTCGATACATAAGG+CGG | 0.712422 | 1_4:-6479140 | None:intergenic |
| GGTCGCCATAATCTACAAAG+CGG | 0.718055 | 1_4:+6479918 | Msa0146710:CDS |
| TGTTGGCGTGGTGGACACGG+TGG | 0.747579 | 1_4:-6479162 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTTTAAATATAATTGAT+TGG | + | chr1_4:6479980-6479999 | Msa0146710:intron | 10.0% |
| !! | TAAGTTTAAATATAATTGAT+TGG | + | chr1_4:6479980-6479999 | Msa0146710:intron | 10.0% |
| !! | ACAAAATATAAGAGAAAGTT+AGG | - | chr1_4:6479285-6479304 | None:intergenic | 20.0% |
| !! | TAATATCAAAGATTGTAACA+CGG | - | chr1_4:6479863-6479882 | None:intergenic | 20.0% |
| !! | ATTCTTTCCCAATAATAATA+TGG | + | chr1_4:6480082-6480101 | Msa0146710:CDS | 20.0% |
| !! | TTCTTTCCCAATAATAATAT+GGG | + | chr1_4:6480083-6480102 | Msa0146710:CDS | 20.0% |
| !! | ACAAAATATAAGAGAAAGTT+AGG | - | chr1_4:6479285-6479304 | None:intergenic | 20.0% |
| !! | TAATATCAAAGATTGTAACA+CGG | - | chr1_4:6479863-6479882 | None:intergenic | 20.0% |
| !! | ATTCTTTCCCAATAATAATA+TGG | + | chr1_4:6480082-6480101 | Msa0146710:CDS | 20.0% |
| !! | TTCTTTCCCAATAATAATAT+GGG | + | chr1_4:6480083-6480102 | Msa0146710:CDS | 20.0% |
| !! | TTTTCAATCAAAGAAGAAGA+AGG | - | chr1_4:6479594-6479613 | None:intergenic | 25.0% |
| ! | ATTAATATTGAGTAAGAGAG+AGG | - | chr1_4:6479772-6479791 | None:intergenic | 25.0% |
| ! | TCTTTCCCAATAATAATATG+GGG | + | chr1_4:6480084-6480103 | Msa0146710:CDS | 25.0% |
| ! | TTCATCTTCACAAATAATGA+TGG | + | chr1_4:6480142-6480161 | Msa0146710:CDS | 25.0% |
| ! | TCATCTTCACAAATAATGAT+GGG | + | chr1_4:6480143-6480162 | Msa0146710:CDS | 25.0% |
| !! | TTTTCAATCAAAGAAGAAGA+AGG | - | chr1_4:6479594-6479613 | None:intergenic | 25.0% |
| ! | ATTAATATTGAGTAAGAGAG+AGG | - | chr1_4:6479772-6479791 | None:intergenic | 25.0% |
| ! | TCTTTCCCAATAATAATATG+GGG | + | chr1_4:6480084-6480103 | Msa0146710:CDS | 25.0% |
| ! | TTCATCTTCACAAATAATGA+TGG | + | chr1_4:6480142-6480161 | Msa0146710:CDS | 25.0% |
| ! | TCATCTTCACAAATAATGAT+GGG | + | chr1_4:6480143-6480162 | Msa0146710:CDS | 25.0% |
| TGATGTATGCTACAAAAATG+AGG | + | chr1_4:6479090-6479109 | Msa0146710:CDS | 30.0% | |
| !!! | ATGTTGACTTTTTTTCCATG+TGG | + | chr1_4:6479364-6479383 | Msa0146710:intron | 30.0% |
| AACTTACACAGAAACATGAT+AGG | + | chr1_4:6479472-6479491 | Msa0146710:CDS | 30.0% | |
| !! | TTGATTGGTTTGTTTGTGAT+TGG | + | chr1_4:6479995-6480014 | Msa0146710:intron | 30.0% |
| GGTGATGAATTGTTTAATGT+TGG | + | chr1_4:6480038-6480057 | Msa0146710:CDS | 30.0% | |
| CAGATCCCCATATTATTATT+GGG | - | chr1_4:6480092-6480111 | None:intergenic | 30.0% | |
| CAATAATAATATGGGGATCT+GGG | + | chr1_4:6480091-6480110 | Msa0146710:CDS | 30.0% | |
| TGTGAAGATGAATATAGAGA+AGG | - | chr1_4:6480134-6480153 | None:intergenic | 30.0% | |
| CATCTTCACAAATAATGATG+GGG | + | chr1_4:6480144-6480163 | Msa0146710:CDS | 30.0% | |
| ATATCTTGTTCTCTTGGAAT+TGG | - | chr1_4:6480288-6480307 | None:intergenic | 30.0% | |
| TGATGTATGCTACAAAAATG+AGG | + | chr1_4:6479090-6479109 | Msa0146710:CDS | 30.0% | |
| !!! | ATGTTGACTTTTTTTCCATG+TGG | + | chr1_4:6479364-6479383 | Msa0146710:intron | 30.0% |
| AACTTACACAGAAACATGAT+AGG | + | chr1_4:6479472-6479491 | Msa0146710:CDS | 30.0% | |
| !! | TTGATTGGTTTGTTTGTGAT+TGG | + | chr1_4:6479995-6480014 | Msa0146710:intron | 30.0% |
| GGTGATGAATTGTTTAATGT+TGG | + | chr1_4:6480038-6480057 | Msa0146710:CDS | 30.0% | |
| CAGATCCCCATATTATTATT+GGG | - | chr1_4:6480092-6480111 | None:intergenic | 30.0% | |
| CAATAATAATATGGGGATCT+GGG | + | chr1_4:6480091-6480110 | Msa0146710:CDS | 30.0% | |
| TGTGAAGATGAATATAGAGA+AGG | - | chr1_4:6480134-6480153 | None:intergenic | 30.0% | |
| CATCTTCACAAATAATGATG+GGG | + | chr1_4:6480144-6480163 | Msa0146710:CDS | 30.0% | |
| ATATCTTGTTCTCTTGGAAT+TGG | - | chr1_4:6480288-6480307 | None:intergenic | 30.0% | |
| ! | TTTTGTAGCATACATCACAC+TGG | - | chr1_4:6479087-6479106 | None:intergenic | 35.0% |
| !!! | TGACTTTTTTTCCATGTGGT+AGG | + | chr1_4:6479368-6479387 | Msa0146710:intron | 35.0% |
| AGAAGGAACAAGATTTGACT+TGG | - | chr1_4:6479577-6479596 | None:intergenic | 35.0% | |
| TACTTGATTGAAACTCTACC+CGG | + | chr1_4:6479675-6479694 | Msa0146710:CDS | 35.0% | |
| AAAATCATCAACTTGCCAAC+CGG | - | chr1_4:6479697-6479716 | None:intergenic | 35.0% | |
| AAAACCTTGGAGAAAGCAAA+GGG | - | chr1_4:6479738-6479757 | None:intergenic | 35.0% | |
| GGTAGAAAATAGGAAAACCT+TGG | - | chr1_4:6479751-6479770 | None:intergenic | 35.0% | |
| GTAAGAGAGAGGTAGAAAAT+AGG | - | chr1_4:6479761-6479780 | None:intergenic | 35.0% | |
| AAATTCAGCTAATACAGCCT+CGG | + | chr1_4:6479897-6479916 | Msa0146710:CDS | 35.0% | |
| CCAGATCCCCATATTATTAT+TGG | - | chr1_4:6480093-6480112 | None:intergenic | 35.0% | |
| CCAATAATAATATGGGGATC+TGG | + | chr1_4:6480090-6480109 | Msa0146710:CDS | 35.0% | |
| GAAGATGAATATAGAGAAGG+TGG | - | chr1_4:6480131-6480150 | None:intergenic | 35.0% | |
| AAAGCAGCATCAACAAATCA+AGG | + | chr1_4:6480201-6480220 | Msa0146710:CDS | 35.0% | |
| CCATAGATATCTTGTTCTCT+TGG | - | chr1_4:6480294-6480313 | None:intergenic | 35.0% | |
| CCAAGAGAACAAGATATCTA+TGG | + | chr1_4:6480291-6480310 | Msa0146710:CDS | 35.0% | |
| ! | TTTTGTAGCATACATCACAC+TGG | - | chr1_4:6479087-6479106 | None:intergenic | 35.0% |
| !!! | TGACTTTTTTTCCATGTGGT+AGG | + | chr1_4:6479368-6479387 | Msa0146710:intron | 35.0% |
| AGAAGGAACAAGATTTGACT+TGG | - | chr1_4:6479577-6479596 | None:intergenic | 35.0% | |
| TACTTGATTGAAACTCTACC+CGG | + | chr1_4:6479675-6479694 | Msa0146710:CDS | 35.0% | |
| AAAATCATCAACTTGCCAAC+CGG | - | chr1_4:6479697-6479716 | None:intergenic | 35.0% | |
| AAAACCTTGGAGAAAGCAAA+GGG | - | chr1_4:6479738-6479757 | None:intergenic | 35.0% | |
| GGTAGAAAATAGGAAAACCT+TGG | - | chr1_4:6479751-6479770 | None:intergenic | 35.0% | |
| GTAAGAGAGAGGTAGAAAAT+AGG | - | chr1_4:6479761-6479780 | None:intergenic | 35.0% | |
| AAATTCAGCTAATACAGCCT+CGG | + | chr1_4:6479897-6479916 | Msa0146710:CDS | 35.0% | |
| CCAGATCCCCATATTATTAT+TGG | - | chr1_4:6480093-6480112 | None:intergenic | 35.0% | |
| CCAATAATAATATGGGGATC+TGG | + | chr1_4:6480090-6480109 | Msa0146710:CDS | 35.0% | |
| GAAGATGAATATAGAGAAGG+TGG | - | chr1_4:6480131-6480150 | None:intergenic | 35.0% | |
| AAAGCAGCATCAACAAATCA+AGG | + | chr1_4:6480201-6480220 | Msa0146710:CDS | 35.0% | |
| CCATAGATATCTTGTTCTCT+TGG | - | chr1_4:6480294-6480313 | None:intergenic | 35.0% | |
| CCAAGAGAACAAGATATCTA+TGG | + | chr1_4:6480291-6480310 | Msa0146710:CDS | 35.0% | |
| ! | GTGTTTGGAAGCTAGTTTGT+TGG | - | chr1_4:6479182-6479201 | None:intergenic | 40.0% |
| TTGGGTTATGAAGAGAGAGA+CGG | - | chr1_4:6479207-6479226 | None:intergenic | 40.0% | |
| CATGATAGGTTTCTTCTCAC+TGG | + | chr1_4:6479486-6479505 | Msa0146710:CDS | 40.0% | |
| TACTCCTTCACCAACATCTA+TGG | + | chr1_4:6479620-6479639 | Msa0146710:CDS | 40.0% | |
| ! | TCTTCCATAGATGTTGGTGA+AGG | - | chr1_4:6479627-6479646 | None:intergenic | 40.0% |
| TCACCAACATCTATGGAAGA+AGG | + | chr1_4:6479627-6479646 | Msa0146710:CDS | 40.0% | |
| CTTCCTTCTTCCATAGATGT+TGG | - | chr1_4:6479633-6479652 | None:intergenic | 40.0% | |
| ACATCTATGGAAGAAGGAAG+TGG | + | chr1_4:6479633-6479652 | Msa0146710:CDS | 40.0% | |
| AAATCATCAACTTGCCAACC+GGG | - | chr1_4:6479696-6479715 | None:intergenic | 40.0% | |
| GAAAACCTTGGAGAAAGCAA+AGG | - | chr1_4:6479739-6479758 | None:intergenic | 40.0% | |
| ! | GGTTTGTTTGTGATTGGATC+TGG | + | chr1_4:6480001-6480020 | Msa0146710:intron | 40.0% |
| GATCTGGTGTATGAAATGCA+GGG | + | chr1_4:6480017-6480036 | Msa0146710:intron | 40.0% | |
| GATGAATATAGAGAAGGTGG+TGG | - | chr1_4:6480128-6480147 | None:intergenic | 40.0% | |
| CAGAGTGAGACAACAAAGAA+GGG | + | chr1_4:6480167-6480186 | Msa0146710:CDS | 40.0% | |
| AGAGTGAGACAACAAAGAAG+GGG | + | chr1_4:6480168-6480187 | Msa0146710:CDS | 40.0% | |
| GCATCAACAAATCAAGGTTG+AGG | + | chr1_4:6480207-6480226 | Msa0146710:CDS | 40.0% | |
| ACAAATCAAGGTTGAGGTTG+AGG | + | chr1_4:6480213-6480232 | Msa0146710:CDS | 40.0% | |
| CAAATCAAGGTTGAGGTTGA+GGG | + | chr1_4:6480214-6480233 | Msa0146710:CDS | 40.0% | |
| ! | TTGGTAACAGGACTAATCTG+TGG | - | chr1_4:6480269-6480288 | None:intergenic | 40.0% |
| ! | GTTCTCTTGGAATTGGTAAC+AGG | - | chr1_4:6480281-6480300 | None:intergenic | 40.0% |
| ! | GTGTTTGGAAGCTAGTTTGT+TGG | - | chr1_4:6479182-6479201 | None:intergenic | 40.0% |
| TTGGGTTATGAAGAGAGAGA+CGG | - | chr1_4:6479207-6479226 | None:intergenic | 40.0% | |
| CATGATAGGTTTCTTCTCAC+TGG | + | chr1_4:6479486-6479505 | Msa0146710:CDS | 40.0% | |
| TACTCCTTCACCAACATCTA+TGG | + | chr1_4:6479620-6479639 | Msa0146710:CDS | 40.0% | |
| ! | TCTTCCATAGATGTTGGTGA+AGG | - | chr1_4:6479627-6479646 | None:intergenic | 40.0% |
| TCACCAACATCTATGGAAGA+AGG | + | chr1_4:6479627-6479646 | Msa0146710:CDS | 40.0% | |
| CTTCCTTCTTCCATAGATGT+TGG | - | chr1_4:6479633-6479652 | None:intergenic | 40.0% | |
| ACATCTATGGAAGAAGGAAG+TGG | + | chr1_4:6479633-6479652 | Msa0146710:CDS | 40.0% | |
| AAATCATCAACTTGCCAACC+GGG | - | chr1_4:6479696-6479715 | None:intergenic | 40.0% | |
| GAAAACCTTGGAGAAAGCAA+AGG | - | chr1_4:6479739-6479758 | None:intergenic | 40.0% | |
| ! | GGTTTGTTTGTGATTGGATC+TGG | + | chr1_4:6480001-6480020 | Msa0146710:intron | 40.0% |
| GATCTGGTGTATGAAATGCA+GGG | + | chr1_4:6480017-6480036 | Msa0146710:intron | 40.0% | |
| GATGAATATAGAGAAGGTGG+TGG | - | chr1_4:6480128-6480147 | None:intergenic | 40.0% | |
| CAGAGTGAGACAACAAAGAA+GGG | + | chr1_4:6480167-6480186 | Msa0146710:CDS | 40.0% | |
| AGAGTGAGACAACAAAGAAG+GGG | + | chr1_4:6480168-6480187 | Msa0146710:CDS | 40.0% | |
| GCATCAACAAATCAAGGTTG+AGG | + | chr1_4:6480207-6480226 | Msa0146710:CDS | 40.0% | |
| ACAAATCAAGGTTGAGGTTG+AGG | + | chr1_4:6480213-6480232 | Msa0146710:CDS | 40.0% | |
| CAAATCAAGGTTGAGGTTGA+GGG | + | chr1_4:6480214-6480233 | Msa0146710:CDS | 40.0% | |
| ! | TTGGTAACAGGACTAATCTG+TGG | - | chr1_4:6480269-6480288 | None:intergenic | 40.0% |
| ! | GTTCTCTTGGAATTGGTAAC+AGG | - | chr1_4:6480281-6480300 | None:intergenic | 40.0% |
| GATACATAAGGCGGCTTCAT+CGG | - | chr1_4:6479134-6479153 | None:intergenic | 45.0% | |
| !! | GAGGGTGTTGTTTAGGAGTT+GGG | - | chr1_4:6479225-6479244 | None:intergenic | 45.0% |
| !! | AGAGGGTGTTGTTTAGGAGT+TGG | - | chr1_4:6479226-6479245 | None:intergenic | 45.0% |
| CCTGACAAATATCGCAGAGA+GGG | - | chr1_4:6479243-6479262 | None:intergenic | 45.0% | |
| ACCTGACAAATATCGCAGAG+AGG | - | chr1_4:6479244-6479263 | None:intergenic | 45.0% | |
| TCTATGGAAGAAGGAAGTGG+TGG | + | chr1_4:6479636-6479655 | Msa0146710:CDS | 45.0% | |
| TGATTGAAACTCTACCCGGT+TGG | + | chr1_4:6479679-6479698 | Msa0146710:CDS | 45.0% | |
| TGTTCCCTTTGCTTTCTCCA+AGG | + | chr1_4:6479731-6479750 | Msa0146710:CDS | 45.0% | |
| TTTGTAGATTATGGCGACCG+AGG | - | chr1_4:6479917-6479936 | None:intergenic | 45.0% | |
| GGTCGCCATAATCTACAAAG+CGG | + | chr1_4:6479918-6479937 | Msa0146710:CDS | 45.0% | |
| TCGGACCGCTTTGTAGATTA+TGG | - | chr1_4:6479926-6479945 | None:intergenic | 45.0% | |
| ATAATCTACAAAGCGGTCCG+AGG | + | chr1_4:6479925-6479944 | Msa0146710:intron | 45.0% | |
| GGATCTGGTGTATGAAATGC+AGG | + | chr1_4:6480016-6480035 | Msa0146710:intron | 45.0% | |
| GCAGAGTGAGACAACAAAGA+AGG | + | chr1_4:6480166-6480185 | Msa0146710:CDS | 45.0% | |
| GATACATAAGGCGGCTTCAT+CGG | - | chr1_4:6479134-6479153 | None:intergenic | 45.0% | |
| !! | GAGGGTGTTGTTTAGGAGTT+GGG | - | chr1_4:6479225-6479244 | None:intergenic | 45.0% |
| !! | AGAGGGTGTTGTTTAGGAGT+TGG | - | chr1_4:6479226-6479245 | None:intergenic | 45.0% |
| CCTGACAAATATCGCAGAGA+GGG | - | chr1_4:6479243-6479262 | None:intergenic | 45.0% | |
| ACCTGACAAATATCGCAGAG+AGG | - | chr1_4:6479244-6479263 | None:intergenic | 45.0% | |
| TCTATGGAAGAAGGAAGTGG+TGG | + | chr1_4:6479636-6479655 | Msa0146710:CDS | 45.0% | |
| TGATTGAAACTCTACCCGGT+TGG | + | chr1_4:6479679-6479698 | Msa0146710:CDS | 45.0% | |
| TGTTCCCTTTGCTTTCTCCA+AGG | + | chr1_4:6479731-6479750 | Msa0146710:CDS | 45.0% | |
| TTTGTAGATTATGGCGACCG+AGG | - | chr1_4:6479917-6479936 | None:intergenic | 45.0% | |
| GGTCGCCATAATCTACAAAG+CGG | + | chr1_4:6479918-6479937 | Msa0146710:CDS | 45.0% | |
| TCGGACCGCTTTGTAGATTA+TGG | - | chr1_4:6479926-6479945 | None:intergenic | 45.0% | |
| ATAATCTACAAAGCGGTCCG+AGG | + | chr1_4:6479925-6479944 | Msa0146710:intron | 45.0% | |
| GGATCTGGTGTATGAAATGC+AGG | + | chr1_4:6480016-6480035 | Msa0146710:intron | 45.0% | |
| GCAGAGTGAGACAACAAAGA+AGG | + | chr1_4:6480166-6480185 | Msa0146710:CDS | 45.0% | |
| GTCGCAGTCGATACATAAGG+CGG | - | chr1_4:6479143-6479162 | None:intergenic | 50.0% | |
| GTGGTCGCAGTCGATACATA+AGG | - | chr1_4:6479146-6479165 | None:intergenic | 50.0% | |
| !! | AAGCTAGTTTGTTGGCGTGG+TGG | - | chr1_4:6479174-6479193 | None:intergenic | 50.0% |
| !! | TGGAAGCTAGTTTGTTGGCG+TGG | - | chr1_4:6479177-6479196 | None:intergenic | 50.0% |
| AAGAGAGAGACGGTGGTGTT+TGG | - | chr1_4:6479197-6479216 | None:intergenic | 50.0% | |
| GGTTATGAAGAGAGAGACGG+TGG | - | chr1_4:6479204-6479223 | None:intergenic | 50.0% | |
| !! | TCGCAGAGAGGGTGTTGTTT+AGG | - | chr1_4:6479232-6479251 | None:intergenic | 50.0% |
| CCCTCTCTGCGATATTTGTC+AGG | + | chr1_4:6479240-6479259 | Msa0146710:CDS | 50.0% | |
| AGCTCTTCTCTCCTACCACA+TGG | - | chr1_4:6479382-6479401 | None:intergenic | 50.0% | |
| GACTTGGCAGTAGCTGAAGA+AGG | - | chr1_4:6479561-6479580 | None:intergenic | 50.0% | |
| ACATGCAGCTGATACAGCCT+CGG | - | chr1_4:6479945-6479964 | None:intergenic | 50.0% | |
| GTCGCAGTCGATACATAAGG+CGG | - | chr1_4:6479143-6479162 | None:intergenic | 50.0% | |
| GTGGTCGCAGTCGATACATA+AGG | - | chr1_4:6479146-6479165 | None:intergenic | 50.0% | |
| !! | AAGCTAGTTTGTTGGCGTGG+TGG | - | chr1_4:6479174-6479193 | None:intergenic | 50.0% |
| !! | TGGAAGCTAGTTTGTTGGCG+TGG | - | chr1_4:6479177-6479196 | None:intergenic | 50.0% |
| AAGAGAGAGACGGTGGTGTT+TGG | - | chr1_4:6479197-6479216 | None:intergenic | 50.0% | |
| GGTTATGAAGAGAGAGACGG+TGG | - | chr1_4:6479204-6479223 | None:intergenic | 50.0% | |
| !! | TCGCAGAGAGGGTGTTGTTT+AGG | - | chr1_4:6479232-6479251 | None:intergenic | 50.0% |
| CCCTCTCTGCGATATTTGTC+AGG | + | chr1_4:6479240-6479259 | Msa0146710:CDS | 50.0% | |
| AGCTCTTCTCTCCTACCACA+TGG | - | chr1_4:6479382-6479401 | None:intergenic | 50.0% | |
| GACTTGGCAGTAGCTGAAGA+AGG | - | chr1_4:6479561-6479580 | None:intergenic | 50.0% | |
| ACATGCAGCTGATACAGCCT+CGG | - | chr1_4:6479945-6479964 | None:intergenic | 50.0% | |
| ACATAAGGCGGCTTCATCGG+CGG | - | chr1_4:6479131-6479150 | None:intergenic | 55.0% | |
| !! | GTTTGTTGGCGTGGTGGACA+CGG | - | chr1_4:6479168-6479187 | None:intergenic | 55.0% |
| ! | AGAGAAGGTGGTGGTGCTTG+AGG | - | chr1_4:6480119-6480138 | None:intergenic | 55.0% |
| ACATAAGGCGGCTTCATCGG+CGG | - | chr1_4:6479131-6479150 | None:intergenic | 55.0% | |
| !! | GTTTGTTGGCGTGGTGGACA+CGG | - | chr1_4:6479168-6479187 | None:intergenic | 55.0% |
| ! | AGAGAAGGTGGTGGTGCTTG+AGG | - | chr1_4:6480119-6480138 | None:intergenic | 55.0% |
| !! | TGTTGGCGTGGTGGACACGG+TGG | - | chr1_4:6479165-6479184 | None:intergenic | 65.0% |
| !! | TGTTGGCGTGGTGGACACGG+TGG | - | chr1_4:6479165-6479184 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6479076 | 6480316 | 6479076 | ID=Msa0146710;Name=Msa0146710 |
| chr1_4 | mRNA | 6479076 | 6480316 | 6479076 | ID=Msa0146710-mRNA-1;Parent=Msa0146710;Name=Msa0146710-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|0.75|1|1|4|0|290 |
| chr1_4 | exon | 6479076 | 6479261 | 6479076 | ID=Msa0146710-mRNA-1:exon:2820;Parent=Msa0146710-mRNA-1 |
| chr1_4 | exon | 6479390 | 6479752 | 6479390 | ID=Msa0146710-mRNA-1:exon:2821;Parent=Msa0146710-mRNA-1 |
| chr1_4 | exon | 6479895 | 6479939 | 6479895 | ID=Msa0146710-mRNA-1:exon:2822;Parent=Msa0146710-mRNA-1 |
| chr1_4 | exon | 6480038 | 6480316 | 6480038 | ID=Msa0146710-mRNA-1:exon:2823;Parent=Msa0146710-mRNA-1 |
| chr1_4 | CDS | 6479076 | 6479261 | 6479076 | ID=Msa0146710-mRNA-1:cds;Parent=Msa0146710-mRNA-1 |
| chr1_4 | CDS | 6479390 | 6479752 | 6479390 | ID=Msa0146710-mRNA-1:cds;Parent=Msa0146710-mRNA-1 |
| chr1_4 | CDS | 6479895 | 6479939 | 6479895 | ID=Msa0146710-mRNA-1:cds;Parent=Msa0146710-mRNA-1 |
| chr1_4 | CDS | 6480038 | 6480316 | 6480038 | ID=Msa0146710-mRNA-1:cds;Parent=Msa0146710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
