AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146850 MtrunA17_Chr1g0156051 97.297 555 13 1 1 553 1 555 0.0 1101
Msa0146850 MtrunA17_Chr4g0036071 48.967 484 181 18 42 504 41 479 1.30e-109 337
Msa0146850 MtrunA17_Chr6g0463571 47.964 221 94 8 301 513 74 281 3.33e-44 159
Msa0146850 MtrunA17_Chr2g0329551 60.000 140 53 2 340 477 175 313 2.92e-41 154
Msa0146850 MtrunA17_Chr3g0128781 54.777 157 67 2 368 521 91 246 2.25e-40 148
Msa0146850 MtrunA17_Chr5g0432701 56.944 144 52 2 340 483 124 257 2.44e-39 147
Msa0146850 MtrunA17_Chr3g0107491 52.486 181 78 4 340 518 138 312 3.95e-39 147
Msa0146850 MtrunA17_Chr2g0316551 51.546 97 43 2 383 477 206 300 8.08e-19 88.2
Msa0146850 MtrunA17_Chr4g0040891 50.000 98 45 2 384 479 193 288 2.65e-18 86.3
Msa0146850 MtrunA17_Chr2g0325131 51.020 98 44 2 384 479 190 285 2.71e-18 86.7
Msa0146850 MtrunA17_Chr2g0306581 71.429 49 14 0 373 421 1 49 4.00e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146850 AT4G38900.2 45.028 533 199 25 19 505 27 511 4.14e-101 316
Msa0146850 AT4G38900.3 45.028 533 199 25 19 505 27 511 4.14e-101 316
Msa0146850 AT4G38900.1 44.527 539 199 26 19 505 27 517 1.84e-98 310
Msa0146850 AT2G21230.4 41.649 461 207 15 79 510 74 501 4.02e-81 263
Msa0146850 AT2G21230.1 41.649 461 207 15 79 510 74 501 4.02e-81 263
Msa0146850 AT2G21230.3 40.899 467 208 16 79 510 74 507 5.74e-78 255
Msa0146850 AT2G21230.2 42.195 410 181 14 79 465 74 450 1.75e-73 241
Msa0146850 AT1G43700.1 47.549 204 87 6 300 483 89 292 2.89e-42 155
Msa0146850 AT2G31370.5 53.529 170 75 1 340 509 156 321 7.69e-41 152
Msa0146850 AT2G40620.1 49.505 202 77 4 337 525 112 301 2.06e-40 150
Msa0146850 AT2G31370.2 53.529 170 75 1 340 509 156 321 2.17e-40 151
Msa0146850 AT2G31370.4 53.529 170 75 1 340 509 156 321 2.17e-40 151
Msa0146850 AT2G31370.1 53.529 170 75 1 340 509 156 321 2.17e-40 151
Msa0146850 AT2G31370.7 53.529 170 75 1 340 509 156 321 2.17e-40 151
Msa0146850 AT2G31370.3 53.529 170 75 1 340 509 156 321 2.17e-40 151
Msa0146850 AT2G31370.6 53.529 170 75 1 340 509 156 321 2.17e-40 151
Msa0146850 AT1G06070.1 56.494 154 56 3 334 477 150 302 8.64e-40 150
Msa0146850 AT1G06850.1 51.634 153 72 1 356 506 117 269 4.80e-38 143
Msa0146850 AT2G13150.1 36.788 193 111 5 298 488 71 254 1.07e-28 115
Msa0146850 AT2G12940.1 35.676 185 110 4 296 480 68 243 5.66e-28 114
Msa0146850 AT2G12900.1 38.760 129 71 1 357 477 80 208 4.14e-23 99.4
Msa0146850 AT1G06850.2 60.241 83 31 1 356 436 117 199 1.58e-21 94.0
Msa0146850 AT3G58120.1 51.546 97 43 2 385 479 202 296 8.93e-19 88.2
Msa0146850 AT2G42380.2 50.515 97 44 2 385 479 186 280 3.81e-18 86.3
Msa0146850 AT2G42380.5 51.190 84 37 2 385 466 186 267 1.07e-15 77.8
Msa0146850 AT3G58120.2 52.439 82 35 2 385 464 202 281 2.32e-15 77.0
Msa0146850 AT2G21235.1 32.995 197 90 5 382 542 356 546 4.82e-15 78.6
Msa0146850 AT2G42380.1 46.392 97 37 3 385 479 186 269 1.83e-12 68.9
Msa0146850 AT1G58110.1 43.158 95 49 1 383 477 232 321 8.18e-11 64.3
Msa0146850 AT1G58110.2 43.158 95 49 1 383 477 232 321 8.18e-11 64.3

Find 189 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACTCCATGCTGATTTC+TGG 0.095023 1_4:+6592218 None:intergenic
TGAATTCTCTTCTAGGATTT+TGG 0.159961 1_4:-6592008 Msa0146850:intron
AGGTGTTCTCTATTATAATT+TGG 0.176237 1_4:-6590042 None:intergenic
TTAGGTGATAAACTGGTATT+AGG 0.185148 1_4:+6593109 None:intergenic
ATTTGATTAATTTGATTAAT+AGG 0.196865 1_4:+6593190 None:intergenic
GTTTAGTGCTTACATGAATT+TGG 0.199161 1_4:-6592570 Msa0146850:CDS
GATCGTCGGAATTTGGTTTC+TGG 0.214069 1_4:-6592719 Msa0146850:CDS
ATGGAGGATGGCTTGGGTTT+TGG 0.216775 1_4:-6592908 Msa0146850:CDS
TGCATAATGTTTGCAGTAAA+TGG 0.227238 1_4:-6590397 Msa0146850:exon
TCTAGCAGTGATTCGCCTTT+AGG 0.230921 1_4:-6592803 Msa0146850:CDS
GAGATTGTGGAGGCATAAAT+TGG 0.250520 1_4:+6593068 None:intergenic
GGCATAGGATTCAATTGAAT+TGG 0.265815 1_4:+6593211 None:intergenic
GATGATACGCACCTGTAATT+TGG 0.269495 1_4:+6591871 None:intergenic
CCTGAAAATCACAAAAGTTC+TGG 0.271067 1_4:-6593160 Msa0146850:CDS
ACTAAATATATTCTTTGAAT+TGG 0.283736 1_4:-6590328 Msa0146850:three_prime_UTR
ATCATGCACCTTCGCCTAAC+CGG 0.284416 1_4:-6592880 Msa0146850:CDS
GTCTGCCCTCTCAGGTCTTA+TGG 0.290824 1_4:-6590595 Msa0146850:CDS
TTTCATGTTAGTTTACCTTT+TGG 0.294896 1_4:-6590154 Msa0146850:three_prime_UTR
AATCACAAAAGTTCTGGTTT+TGG 0.303027 1_4:-6593154 Msa0146850:CDS
TGTCAGTGATCGTCGGAATT+TGG 0.310184 1_4:-6592726 Msa0146850:CDS
TTGGCTGCTGATGCTGCGCC+TGG 0.311111 1_4:+6590541 None:intergenic
CTAGCAGTGATTCGCCTTTA+GGG 0.324253 1_4:-6592802 Msa0146850:CDS
GATGAAATACATTTCTGAAT+TGG 0.329479 1_4:-6591948 Msa0146850:CDS
GACTGTGTTGATGGGTTTAG+AGG 0.332730 1_4:-6592644 Msa0146850:CDS
TACTCAGTTTACCAAATTAC+AGG 0.335238 1_4:-6591882 Msa0146850:intron
GATAAACTGGTATTAGGGTT+AGG 0.348576 1_4:+6593115 None:intergenic
TATTAATCAAATTAATCAAA+TGG 0.352253 1_4:-6593188 Msa0146850:CDS
CCAGAAATCAGCATGGAGTT+TGG 0.352422 1_4:-6592218 Msa0146850:CDS
CATCAATAATTTGCAGTTTG+AGG 0.353920 1_4:-6593381 Msa0146850:five_prime_UTR
GGGTTCGAAAGATGTTTCTA+TGG 0.354897 1_4:-6592927 Msa0146850:CDS
ATACATCAGTTGGCCTATAT+AGG 0.356707 1_4:-6590259 Msa0146850:three_prime_UTR
GGTGTTCTCTATTATAATTT+GGG 0.360691 1_4:-6590041 None:intergenic
CAAATTGAGGCTTCAATCCT+TGG 0.361103 1_4:-6591694 Msa0146850:CDS
TACATCAGTTGGCCTATATA+GGG 0.365254 1_4:-6590258 Msa0146850:three_prime_UTR
GATAATGAACAGCCCTATAT+AGG 0.366574 1_4:+6590246 None:intergenic
ATATAAGCAATTGATGATAT+TGG 0.371773 1_4:-6590373 Msa0146850:three_prime_UTR
ATAGAGAACACCTTCATAAA+TGG 0.372030 1_4:+6590052 None:intergenic
GCATAGGATTCAATTGAATT+GGG 0.375101 1_4:+6593212 None:intergenic
TAGTTTCTGTCTGAAGAGTT+TGG 0.377481 1_4:+6591915 None:intergenic
GTTTCTATGGAGGATGGCTT+GGG 0.385643 1_4:-6592914 Msa0146850:CDS
TGATGGTTTAGGTGATAAAC+TGG 0.388036 1_4:+6593102 None:intergenic
CACAATCTCAAACTCATTCC+AGG 0.390554 1_4:-6593054 Msa0146850:CDS
AAGGATAGGGACTGTGTTGA+TGG 0.391348 1_4:-6592653 Msa0146850:CDS
TGGAAATTTCTAAGCTGGTT+TGG 0.392467 1_4:+6590522 None:intergenic
GGATAAGGAGATGATGGTTT+AGG 0.394908 1_4:+6593091 None:intergenic
GCCGATTCAGTTGGTGTTGA+AGG 0.397394 1_4:-6592672 Msa0146850:CDS
GGGTTTGAACTTACATGATA+AGG 0.398012 1_4:+6592962 None:intergenic
CGTGTAAATGTGAAAGGAAT+AGG 0.399807 1_4:-6592455 Msa0146850:CDS
TTCTTACCTCTTTGCACGCT+TGG 0.401343 1_4:+6592118 None:intergenic
ACAGGAGATGAAGAAAATAA+TGG 0.405735 1_4:-6592177 Msa0146850:CDS
TCTTACCTCTTTGCACGCTT+GGG 0.408680 1_4:+6592119 None:intergenic
GGTTTGAACTTACATGATAA+GGG 0.413641 1_4:+6592963 None:intergenic
TTCGAACCCAATTCCGAAAA+GGG 0.415405 1_4:+6592941 None:intergenic
AGATTGTGGAGGCATAAATT+GGG 0.419988 1_4:+6593069 None:intergenic
TATTAACCAACAAATGTTCC+AGG 0.420194 1_4:-6590559 Msa0146850:CDS
AGAGAATGATGGAGCTGAAA+TGG 0.422683 1_4:-6592600 Msa0146850:CDS
TGATTCGCCTTTAGGGATAT+CGG 0.426575 1_4:-6592795 Msa0146850:CDS
ATTAATCAAATTAATCAAAT+GGG 0.434941 1_4:-6593187 Msa0146850:CDS
ATTGTCTTCCGCCTCGTAAA+GGG 0.438192 1_4:-6592835 Msa0146850:CDS
CATAAGCTTCCTCCTTTACA+AGG 0.439342 1_4:-6592290 Msa0146850:CDS
TGCCATTCTGATGCTTCGAT+TGG 0.443341 1_4:+6590427 None:intergenic
TTTAGAGGAGAGAGTTTCGA+TGG 0.447218 1_4:-6592629 Msa0146850:CDS
GCTGCGCCTGGAACATTTGT+TGG 0.447847 1_4:+6590553 None:intergenic
CTTCGTTCTCCCATGTGCAC+TGG 0.450136 1_4:-6590186 Msa0146850:three_prime_UTR
GAGGAGAGAGTTTCGATGGG+AGG 0.451918 1_4:-6592625 Msa0146850:CDS
TGTTTCTATGGAGGATGGCT+TGG 0.451973 1_4:-6592915 Msa0146850:CDS
TCATGCACCTTCGCCTAACC+GGG 0.454902 1_4:-6592879 Msa0146850:CDS
AGAGGAGGGAAGGGGTCAAG+AGG 0.455292 1_4:-6592400 Msa0146850:CDS
GGCGGAGAGTCTGCCCTCTC+AGG 0.456637 1_4:-6590603 Msa0146850:CDS
GCCGCAAAACAGCGTCTCTC+AGG 0.456659 1_4:-6590499 Msa0146850:CDS
TAGGTGATAAACTGGTATTA+GGG 0.460276 1_4:+6593110 None:intergenic
GGAGGCATAAATTGGGGATA+AGG 0.460553 1_4:+6593076 None:intergenic
TTCAACCGTCTTCGAACCAC+TGG 0.466140 1_4:+6592502 None:intergenic
GATTATTTGCTTAATTATTG+TGG 0.467966 1_4:-6593338 Msa0146850:five_prime_UTR
TTTCGAACCCAATTCCGAAA+AGG 0.468294 1_4:+6592940 None:intergenic
TCCTTCAACACCAACTGAAT+CGG 0.468786 1_4:+6592671 None:intergenic
TCAGCTGGTGACGCCTCAGC+TGG 0.470371 1_4:-6592753 Msa0146850:CDS
GCGGCTGGAAATTTCTAAGC+TGG 0.471848 1_4:+6590517 None:intergenic
CAGTTGGGACTGTTGTTCCA+AGG 0.474662 1_4:+6591677 None:intergenic
CATTGTCTTCCGCCTCGTAA+AGG 0.477811 1_4:-6592836 Msa0146850:CDS
CTACCATCCATTGAATTGCT+AGG 0.480737 1_4:+6592248 None:intergenic
ATTCTCTTCTTCACCACCGT+TGG 0.483471 1_4:-6593609 Msa0146850:five_prime_UTR
AATTGGGGATAAGGAGATGA+TGG 0.483937 1_4:+6593085 None:intergenic
ATAAACTGGTATTAGGGTTA+GGG 0.484174 1_4:+6593116 None:intergenic
TGTTAACTCTGTGCCTCAGC+TGG 0.484237 1_4:-6592768 Msa0146850:CDS
ATCAGCATGGAGTTTGGAAA+TGG 0.484264 1_4:-6592212 Msa0146850:CDS
CAATAATTAAGCAAATAATC+AGG 0.484866 1_4:+6593341 None:intergenic
TATATTCTTTGAATTGGAGC+TGG 0.486665 1_4:-6590322 Msa0146850:three_prime_UTR
TAATATGACCAATGACCAAA+AGG 0.486998 1_4:+6590139 None:intergenic
TTCTCCCATGTGCACTGGGA+AGG 0.490464 1_4:-6590181 Msa0146850:three_prime_UTR
TTGCTAGGCGAGTGTTGACC+AGG 0.493979 1_4:+6592263 None:intergenic
GTTCAGATGAGAGGAGGGAA+GGG 0.496537 1_4:-6592409 Msa0146850:CDS
GGGGTCAAGAGGAGTTCTAA+TGG 0.499431 1_4:-6592389 Msa0146850:CDS
AGACTTTGAATGGCGAAGTC+CGG 0.501336 1_4:-6590653 Msa0146850:CDS
GAAGGGGAGGGACTCAATGG+TGG 0.501514 1_4:+6592986 None:intergenic
CTTCTCCTATGTCGACCACT+AGG 0.503610 1_4:+6592356 None:intergenic
TTCAGTTGGTGTTGAAGGAT+AGG 0.505836 1_4:-6592667 Msa0146850:CDS
GGGGAAGGGGAGGGACTCAA+TGG 0.509840 1_4:+6592983 None:intergenic
ATGCATACCATCTTTCAGTT+GGG 0.510205 1_4:+6591662 None:intergenic
ACATAGGAGAAGTTACTCAT+TGG 0.510819 1_4:-6592345 Msa0146850:CDS
TTAGAGGAGAGAGTTTCGAT+GGG 0.511374 1_4:-6592628 Msa0146850:CDS
AAAATCCTTCCCAGTGCACA+TGG 0.517816 1_4:+6590176 None:intergenic
CTGGAATGAGTTTGAGATTG+TGG 0.518906 1_4:+6593055 None:intergenic
TTCGTTCTCCCATGTGCACT+GGG 0.523035 1_4:-6590185 Msa0146850:three_prime_UTR
TGTGAAAGGAATAGGTGCTA+AGG 0.524307 1_4:-6592447 Msa0146850:CDS
CATTTCTGAATTGGAGCAGA+AGG 0.526293 1_4:-6591939 Msa0146850:CDS
ATTCTTTGAATTGGAGCTGG+TGG 0.526808 1_4:-6590319 Msa0146850:three_prime_UTR
AGACACACTGTAGCAGAACT+AGG 0.526862 1_4:-6590624 Msa0146850:CDS
TTCTCCTATGTCGACCACTA+GGG 0.527249 1_4:+6592357 None:intergenic
GGTTAGGCGAAGGTGCATGA+TGG 0.527473 1_4:+6592882 None:intergenic
GTTAGGCGAAGGTGCATGAT+GGG 0.530280 1_4:+6592883 None:intergenic
CATGCATACCATCTTTCAGT+TGG 0.532496 1_4:+6591661 None:intergenic
TCAGTTGGTGTTGAAGGATA+GGG 0.533089 1_4:-6592666 Msa0146850:CDS
CATAGGATTCAATTGAATTG+GGG 0.534542 1_4:+6593213 None:intergenic
GTATTAGGGTTAGGGTATGA+AGG 0.535303 1_4:+6593124 None:intergenic
ACAAATTCCGATATCCCTAA+AGG 0.537853 1_4:+6592788 None:intergenic
AACTTACATGATAAGGGGAA+GGG 0.538780 1_4:+6592969 None:intergenic
AAAGATGTTTCTATGGAGGA+TGG 0.538942 1_4:-6592920 Msa0146850:CDS
ACACTCGCCTAGCAATTCAA+TGG 0.545737 1_4:-6592255 Msa0146850:CDS
CGTCGGAATTTGGTTTCTGG+AGG 0.548514 1_4:-6592716 Msa0146850:CDS
TGTTCAGATGAGAGGAGGGA+AGG 0.549074 1_4:-6592410 Msa0146850:CDS
TGAATTAATGCATGAACGAA+TGG 0.549104 1_4:-6593281 Msa0146850:exon
TTAATTTGATTAATAGGCAT+AGG 0.556871 1_4:+6593196 None:intergenic
AGCTGAGGCGTCACCAGCTG+AGG 0.557169 1_4:+6592755 None:intergenic
CCTCCTTTACAAGGTCGACC+TGG 0.557576 1_4:-6592281 Msa0146850:CDS
CAACAGTCCCAACTGAAAGA+TGG 0.557734 1_4:-6591669 Msa0146850:intron
TCAATCAGCTGCTCGCTCAA+AGG 0.558910 1_4:-6591978 Msa0146850:CDS
GAACTTACATGATAAGGGGA+AGG 0.561647 1_4:+6592968 None:intergenic
AGGATAGGGACTGTGTTGAT+GGG 0.565060 1_4:-6592652 Msa0146850:CDS
GCTCTGAATGAGACTTTGAA+TGG 0.567061 1_4:-6590663 Msa0146850:CDS
CTACAGTGTGTCTTAAGCGC+CGG 0.567559 1_4:+6590634 None:intergenic
TTCCAATCGAAGCATCAGAA+TGG 0.567958 1_4:-6590429 Msa0146850:CDS
GATTGTGGAGGCATAAATTG+GGG 0.570685 1_4:+6593070 None:intergenic
TTCAGATGAGAGGAGGGAAG+GGG 0.573694 1_4:-6592408 Msa0146850:CDS
GAGAGTCGTGTAAATGTGAA+AGG 0.575120 1_4:-6592461 Msa0146850:CDS
AGAATAAAGAGTACAAATTG+AGG 0.575659 1_4:-6591707 Msa0146850:CDS
GCATGACCCCGGTTAGGCGA+AGG 0.575829 1_4:+6592872 None:intergenic
GTTTCTGGAGGAGAGAAACC+TGG 0.577894 1_4:-6592704 Msa0146850:CDS
TCGAACCCAATTCCGAAAAG+GGG 0.579453 1_4:+6592942 None:intergenic
TGACCAGGTCGACCTTGTAA+AGG 0.581765 1_4:+6592278 None:intergenic
GATGGGAGGAAAGAGAATGA+TGG 0.583007 1_4:-6592611 Msa0146850:CDS
TTAGGGTTAGGGTATGAAGG+TGG 0.584414 1_4:+6593127 None:intergenic
TACATGATAAGGGGAAGGGG+AGG 0.586718 1_4:+6592973 None:intergenic
TTCCGCCTCGTAAAGGGCAT+AGG 0.587282 1_4:-6592829 Msa0146850:CDS
AACGGTGGTGAAGAAGAGAA+TGG 0.588296 1_4:+6593611 None:intergenic
GTGAAAGGAATAGGTGCTAA+GGG 0.589966 1_4:-6592446 Msa0146850:CDS
CAAGCTGTTCAGATGAGAGG+AGG 0.595367 1_4:-6592415 Msa0146850:CDS
TTGCCCCTAGTGGTCGACAT+AGG 0.596540 1_4:-6592361 Msa0146850:CDS
CGGGGTCATGCTGTTCAGCA+TGG 0.596899 1_4:-6592860 Msa0146850:CDS
CGCCTCGTAAAGGGCATAGG+CGG 0.597353 1_4:-6592826 Msa0146850:CDS
ACATGATAAGGGGAAGGGGA+GGG 0.597516 1_4:+6592974 None:intergenic
AGTAGGTTGTGACAAAGACC+TGG 0.598554 1_4:+6593036 None:intergenic
TTCGAAAGATGTTTCTATGG+AGG 0.599907 1_4:-6592924 Msa0146850:CDS
AAGCTGTTCAGATGAGAGGA+GGG 0.600858 1_4:-6592414 Msa0146850:CDS
TCGCCTAGCAATTCAATGGA+TGG 0.602631 1_4:-6592251 Msa0146850:CDS
TGAACAGCATGACCCCGGTT+AGG 0.603837 1_4:+6592866 None:intergenic
AAATGGTGAATTCAGCTCAC+AGG 0.605226 1_4:-6592195 Msa0146850:CDS
ACTTACATGATAAGGGGAAG+GGG 0.606066 1_4:+6592970 None:intergenic
TTATGAGAAGCCGATTCAGT+TGG 0.606692 1_4:-6592681 Msa0146850:CDS
AGTGAACTACATACATCAGT+TGG 0.608879 1_4:-6590269 Msa0146850:three_prime_UTR
TGAATCGGCTTCTCATAACC+AGG 0.610622 1_4:+6592686 None:intergenic
GTTTGAACTTACATGATAAG+GGG 0.611900 1_4:+6592964 None:intergenic
CAGCTGCTCGCTCAAAGGAG+CGG 0.613324 1_4:-6591973 Msa0146850:CDS
GTTCAAGCTGTTCAGATGAG+AGG 0.616595 1_4:-6592418 Msa0146850:CDS
TCGAGCCATAAGACCTGAGA+GGG 0.619641 1_4:+6590590 None:intergenic
CCATGGTGGACCATTTATGA+AGG 0.620965 1_4:-6590062 Msa0146850:three_prime_UTR
CCAGGTCGACCTTGTAAAGG+AGG 0.621909 1_4:+6592281 None:intergenic
TGGTGAGTGTCAGTGATCGT+CGG 0.625242 1_4:-6592733 Msa0146850:CDS
CAGAACCAGTGGTTCGAAGA+CGG 0.626425 1_4:-6592507 Msa0146850:CDS
ATAGGATTCAATTGAATTGG+GGG 0.630004 1_4:+6593214 None:intergenic
TCTCCTATGTCGACCACTAG+GGG 0.630562 1_4:+6592358 None:intergenic
TTACTGCAAACATTATGCAG+TGG 0.632905 1_4:+6590401 None:intergenic
TCACTGACACTCACCAGCTG+AGG 0.634783 1_4:+6592740 None:intergenic
AATGGAGATATTGCCCCTAG+TGG 0.653222 1_4:-6592371 Msa0146850:CDS
TAAAACACCAGAAATCAGCA+TGG 0.660292 1_4:-6592225 Msa0146850:CDS
CATGCTGAACAGCATGACCC+CGG 0.663495 1_4:+6592861 None:intergenic
CGCCTATGCCCTTTACGAGG+CGG 0.666230 1_4:+6592827 None:intergenic
ATGGAAGATAGCAGAACCAG+TGG 0.676860 1_4:-6592518 Msa0146850:CDS
GACCGCCTATGCCCTTTACG+AGG 0.680484 1_4:+6592824 None:intergenic
AAATCCTTCCCAGTGCACAT+GGG 0.681944 1_4:+6590177 None:intergenic
CTGATCCCAAGCGTGCAAAG+AGG 0.685194 1_4:-6592124 Msa0146850:intron
TAAACTTGCTGAAATTGCTG+CGG 0.696854 1_4:-6592147 Msa0146850:CDS
TCATATTATGAACACAACCT+CGG 0.697255 1_4:-6590124 Msa0146850:three_prime_UTR
CCTTCATAAATGGTCCACCA+TGG 0.698805 1_4:+6590062 None:intergenic
GAATGAGTTTGAGATTGTGG+AGG 0.705083 1_4:+6593058 None:intergenic
GTCGAGCCATAAGACCTGAG+AGG 0.706228 1_4:+6590589 None:intergenic
CATGCACCTTCGCCTAACCG+GGG 0.710407 1_4:-6592878 Msa0146850:CDS
CACACTGTAGCAGAACTAGG+CGG 0.776415 1_4:-6590621 Msa0146850:CDS
ACTTCAGTATGACAACACCG+AGG 0.833481 1_4:+6590107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATTAATTTGATTAAT+AGG + chr1_4:6590485-6590504 None:intergenic 10.0%
!! TATTAATCAAATTAATCAAA+TGG - chr1_4:6590484-6590503 Msa0146850:CDS 10.0%
!! ATTAATCAAATTAATCAAAT+GGG - chr1_4:6590485-6590504 Msa0146850:CDS 10.0%
!!! TTCAATATTAAAATTTTCAA+TGG + chr1_4:6591359-6591378 None:intergenic 10.0%
!!! GAATATAGTAATTCAAATTT+TGG - chr1_4:6592248-6592267 Msa0146850:CDS 15.0%
!! ACTAAATATATTCTTTGAAT+TGG - chr1_4:6593344-6593363 Msa0146850:five_prime_UTR 15.0%
!!! GTTTTAAACATTTTAAGTAT+TGG - chr1_4:6593586-6593605 Msa0146850:intron 15.0%
!! AGAGTTGAAAAATGATTAAA+AGG + chr1_4:6590226-6590245 None:intergenic 20.0%
!! CAATAATTAAGCAAATAATC+AGG + chr1_4:6590334-6590353 None:intergenic 20.0%
!! GATTATTTGCTTAATTATTG+TGG - chr1_4:6590334-6590353 Msa0146850:three_prime_UTR 20.0%
!!! TTAATTTGATTAATAGGCAT+AGG + chr1_4:6590479-6590498 None:intergenic 20.0%
!! GAATCAATAGATAAAAAAGT+AGG + chr1_4:6590656-6590675 None:intergenic 20.0%
!! AATTCACAAACTTAAGAAAA+AGG + chr1_4:6591844-6591863 None:intergenic 20.0%
!! TAACTAGAACATAAAGTAAA+AGG + chr1_4:6592045-6592064 None:intergenic 20.0%
!!! TGTGATTTTCTATATTTAGA+TGG - chr1_4:6592170-6592189 Msa0146850:CDS 20.0%
!!! ATATTTAGATGGATTTTATG+CGG - chr1_4:6592181-6592200 Msa0146850:CDS 20.0%
!!! ATATACTGTATGACAAATTT+TGG - chr1_4:6592220-6592239 Msa0146850:CDS 20.0%
!! CAAACTGTTTAAATGTAATA+TGG - chr1_4:6592420-6592439 Msa0146850:CDS 20.0%
!! CTTAATACATGATACTAAAA+TGG + chr1_4:6592537-6592556 None:intergenic 20.0%
!! TGAATACATAGCTAAATATT+TGG + chr1_4:6592969-6592988 None:intergenic 20.0%
!!! ATATAAGCAATTGATGATAT+TGG - chr1_4:6593299-6593318 Msa0146850:five_prime_UTR 20.0%
! ATCACTAATTAATCTTGTAG+AGG + chr1_4:6590159-6590178 None:intergenic 25.0%
!! TCTTTATCATTTTGCAAGAT+AGG - chr1_4:6590182-6590201 Msa0146850:three_prime_UTR 25.0%
!! CTTTATCATTTTGCAAGATA+GGG - chr1_4:6590183-6590202 Msa0146850:three_prime_UTR 25.0%
!! TATGCACAATATGAGTTTTT+CGG - chr1_4:6591129-6591148 Msa0146850:intron 25.0%
!!! TTTTTTCCAAAAGAAAGACA+CGG + chr1_4:6591603-6591622 None:intergenic 25.0%
! TAAATGTTGAATTCTCTTCT+AGG - chr1_4:6591657-6591676 Msa0146850:intron 25.0%
! GATGAAATACATTTCTGAAT+TGG - chr1_4:6591724-6591743 Msa0146850:CDS 25.0%
!!! CTTTACTTTTTTATTGCACT+TGG - chr1_4:6591911-6591930 Msa0146850:CDS 25.0%
!! AGAATAAAGAGTACAAATTG+AGG - chr1_4:6591965-6591984 Msa0146850:CDS 25.0%
!!! TTCCTTGCAAACTATTTTTT+TGG - chr1_4:6592075-6592094 Msa0146850:intron 25.0%
!! TTCCAAAAAAATAGTTTGCA+AGG + chr1_4:6592080-6592099 None:intergenic 25.0%
!!! AAAAACCAAAAGTACTATGT+AGG + chr1_4:6592332-6592351 None:intergenic 25.0%
!!! TTGTATATGCAGTTTTAAAG+AGG + chr1_4:6592403-6592422 None:intergenic 25.0%
! AAGATCAAAAAATATGTTGC+TGG + chr1_4:6592856-6592875 None:intergenic 25.0%
!!! TTTCATGTTAGTTTACCTTT+TGG - chr1_4:6593518-6593537 Msa0146850:intron 25.0%
ACATAAGCAGAAAAATCCAA+CGG + chr1_4:6590082-6590101 None:intergenic 30.0%
! CATCAATAATTTGCAGTTTG+AGG - chr1_4:6590291-6590310 Msa0146850:three_prime_UTR 30.0%
TGAATTAATGCATGAACGAA+TGG - chr1_4:6590391-6590410 Msa0146850:three_prime_UTR 30.0%
CAGAAAAAAGTTCATGCATT+TGG - chr1_4:6590425-6590444 Msa0146850:CDS 30.0%
ATAGGATTCAATTGAATTGG+GGG + chr1_4:6590461-6590480 None:intergenic 30.0%
CATAGGATTCAATTGAATTG+GGG + chr1_4:6590462-6590481 None:intergenic 30.0%
GCATAGGATTCAATTGAATT+GGG + chr1_4:6590463-6590482 None:intergenic 30.0%
!!! AATCACAAAAGTTCTGGTTT+TGG - chr1_4:6590518-6590537 Msa0146850:CDS 30.0%
ATAAACTGGTATTAGGGTTA+GGG + chr1_4:6590559-6590578 None:intergenic 30.0%
TAGGTGATAAACTGGTATTA+GGG + chr1_4:6590565-6590584 None:intergenic 30.0%
TTAGGTGATAAACTGGTATT+AGG + chr1_4:6590566-6590585 None:intergenic 30.0%
GTTTGAACTTACATGATAAG+GGG + chr1_4:6590711-6590730 None:intergenic 30.0%
GGTTTGAACTTACATGATAA+GGG + chr1_4:6590712-6590731 None:intergenic 30.0%
GTTTAGTGCTTACATGAATT+TGG - chr1_4:6591102-6591121 Msa0146850:intron 30.0%
! ATGCACAATATGAGTTTTTC+GGG - chr1_4:6591130-6591149 Msa0146850:intron 30.0%
ACAGGAGATGAAGAAAATAA+TGG - chr1_4:6591495-6591514 Msa0146850:intron 30.0%
AAAGAAAGACACGGAAATAT+GGG + chr1_4:6591594-6591613 None:intergenic 30.0%
AAAAGAAAGACACGGAAATA+TGG + chr1_4:6591595-6591614 None:intergenic 30.0%
! ATATTTCCGTGTCTTTCTTT+TGG - chr1_4:6591594-6591613 Msa0146850:intron 30.0%
!!! TGAATTCTCTTCTAGGATTT+TGG - chr1_4:6591664-6591683 Msa0146850:intron 30.0%
TACTCAGTTTACCAAATTAC+AGG - chr1_4:6591790-6591809 Msa0146850:intron 30.0%
ATAGCAGCATACATGATATA+TGG + chr1_4:6591878-6591897 None:intergenic 30.0%
! TCTATAAAGTTGATCCCATA+AGG + chr1_4:6592494-6592513 None:intergenic 30.0%
ATGCTGATAAAGAGATTCAT+AGG + chr1_4:6592771-6592790 None:intergenic 30.0%
TATTAACCAACAAATGTTCC+AGG - chr1_4:6593113-6593132 Msa0146850:CDS 30.0%
TGCATAATGTTTGCAGTAAA+TGG - chr1_4:6593275-6593294 Msa0146850:CDS 30.0%
TATATTCTTTGAATTGGAGC+TGG - chr1_4:6593350-6593369 Msa0146850:five_prime_UTR 30.0%
! TTAGTTTACCTTTTGGTCAT+TGG - chr1_4:6593525-6593544 Msa0146850:intron 30.0%
TAATATGACCAATGACCAAA+AGG + chr1_4:6593536-6593555 None:intergenic 30.0%
TCATATTATGAACACAACCT+CGG - chr1_4:6593548-6593567 Msa0146850:intron 30.0%
!!! ACATTTTAAGTATTGGTCCA+TGG - chr1_4:6593593-6593612 Msa0146850:intron 30.0%
ATAGAGAACACCTTCATAAA+TGG + chr1_4:6593623-6593642 None:intergenic 30.0%
TTCAACTCTTAACTATGACC+AGG - chr1_4:6590237-6590256 Msa0146850:three_prime_UTR 35.0%
ATTACAGTAGATTATGCACC+TGG + chr1_4:6590258-6590277 None:intergenic 35.0%
! TTCAATTGAATTGGGGGTTT+TGG + chr1_4:6590455-6590474 None:intergenic 35.0%
GGCATAGGATTCAATTGAAT+TGG + chr1_4:6590464-6590483 None:intergenic 35.0%
! CCAGAACTTTTGTGATTTTC+AGG + chr1_4:6590515-6590534 None:intergenic 35.0%
CCTGAAAATCACAAAAGTTC+TGG - chr1_4:6590512-6590531 Msa0146850:CDS 35.0%
GATAAACTGGTATTAGGGTT+AGG + chr1_4:6590560-6590579 None:intergenic 35.0%
TGATGGTTTAGGTGATAAAC+TGG + chr1_4:6590573-6590592 None:intergenic 35.0%
! AGATTGTGGAGGCATAAATT+GGG + chr1_4:6590606-6590625 None:intergenic 35.0%
AACTTACATGATAAGGGGAA+GGG + chr1_4:6590706-6590725 None:intergenic 35.0%
GGGTTTGAACTTACATGATA+AGG + chr1_4:6590713-6590732 None:intergenic 35.0%
! TGTAAGTTCAAACCCCTTTT+CGG - chr1_4:6590718-6590737 Msa0146850:intron 35.0%
! TTCGAAAGATGTTTCTATGG+AGG - chr1_4:6590748-6590767 Msa0146850:intron 35.0%
! AAAGATGTTTCTATGGAGGA+TGG - chr1_4:6590752-6590771 Msa0146850:intron 35.0%
ACAAATTCCGATATCCCTAA+AGG + chr1_4:6590887-6590906 None:intergenic 35.0%
!!! CAATATGAGTTTTTCGGGTA+TGG - chr1_4:6591135-6591154 Msa0146850:intron 35.0%
CGTGTAAATGTGAAAGGAAT+AGG - chr1_4:6591217-6591236 Msa0146850:intron 35.0%
ACATAGGAGAAGTTACTCAT+TGG - chr1_4:6591327-6591346 Msa0146850:intron 35.0%
TAAAACACCAGAAATCAGCA+TGG - chr1_4:6591447-6591466 Msa0146850:intron 35.0%
!! TAAACTTGCTGAAATTGCTG+CGG - chr1_4:6591525-6591544 Msa0146850:intron 35.0%
TAGTTTCTGTCTGAAGAGTT+TGG + chr1_4:6591760-6591779 None:intergenic 35.0%
ATGCATACCATCTTTCAGTT+GGG + chr1_4:6592013-6592032 None:intergenic 35.0%
CAGAGATCATTGAACAAGAT+TGG + chr1_4:6592282-6592301 None:intergenic 35.0%
! TGTAGGCAGGAAGATTTTAA+AGG + chr1_4:6592315-6592334 None:intergenic 35.0%
TTCAGTACAATACGGTACTT+GGG + chr1_4:6592359-6592378 None:intergenic 35.0%
ATTCAGTACAATACGGTACT+TGG + chr1_4:6592360-6592379 None:intergenic 35.0%
CCAAGAGATTCAGTACAATA+CGG + chr1_4:6592367-6592386 None:intergenic 35.0%
ATTCTGCTATGCTATAGTGT+CGG - chr1_4:6592726-6592745 Msa0146850:CDS 35.0%
! ATTACAGTGCTTCTGAAGAA+GGG + chr1_4:6592908-6592927 None:intergenic 35.0%
! AATTACAGTGCTTCTGAAGA+AGG + chr1_4:6592909-6592928 None:intergenic 35.0%
TCAATTGCAGCACAAAATCA+AGG + chr1_4:6592932-6592951 None:intergenic 35.0%
TGGAAATTTCTAAGCTGGTT+TGG + chr1_4:6593153-6593172 None:intergenic 35.0%
TTACTGCAAACATTATGCAG+TGG + chr1_4:6593274-6593293 None:intergenic 35.0%
AGTGAACTACATACATCAGT+TGG - chr1_4:6593403-6593422 Msa0146850:five_prime_UTR 35.0%
! ATACATCAGTTGGCCTATAT+AGG - chr1_4:6593413-6593432 Msa0146850:five_prime_UTR 35.0%
! TACATCAGTTGGCCTATATA+GGG - chr1_4:6593414-6593433 Msa0146850:five_prime_UTR 35.0%
GATAATGAACAGCCCTATAT+AGG + chr1_4:6593429-6593448 None:intergenic 35.0%
!!! TTTTAAGTATTGGTCCATGG+TGG - chr1_4:6593596-6593615 Msa0146850:five_prime_UTR 35.0%
TAAGCAGAAAAATCCAACGG+TGG + chr1_4:6590079-6590098 None:intergenic 40.0%
GTATTAGGGTTAGGGTATGA+AGG + chr1_4:6590551-6590570 None:intergenic 40.0%
! GGATAAGGAGATGATGGTTT+AGG + chr1_4:6590584-6590603 None:intergenic 40.0%
AATTGGGGATAAGGAGATGA+TGG + chr1_4:6590590-6590609 None:intergenic 40.0%
! GATTGTGGAGGCATAAATTG+GGG + chr1_4:6590605-6590624 None:intergenic 40.0%
! GAGATTGTGGAGGCATAAAT+TGG + chr1_4:6590607-6590626 None:intergenic 40.0%
! GAATGAGTTTGAGATTGTGG+AGG + chr1_4:6590617-6590636 None:intergenic 40.0%
! CTGGAATGAGTTTGAGATTG+TGG + chr1_4:6590620-6590639 None:intergenic 40.0%
CACAATCTCAAACTCATTCC+AGG - chr1_4:6590618-6590637 Msa0146850:CDS 40.0%
ACTTACATGATAAGGGGAAG+GGG + chr1_4:6590705-6590724 None:intergenic 40.0%
GAACTTACATGATAAGGGGA+AGG + chr1_4:6590707-6590726 None:intergenic 40.0%
! TTCAAACCCCTTTTCGGAAT+TGG - chr1_4:6590724-6590743 Msa0146850:intron 40.0%
! TCAAACCCCTTTTCGGAATT+GGG - chr1_4:6590725-6590744 Msa0146850:intron 40.0%
TTCGAACCCAATTCCGAAAA+GGG + chr1_4:6590734-6590753 None:intergenic 40.0%
TTTCGAACCCAATTCCGAAA+AGG + chr1_4:6590735-6590754 None:intergenic 40.0%
! GGGTTCGAAAGATGTTTCTA+TGG - chr1_4:6590745-6590764 Msa0146850:intron 40.0%
! TGATTCGCCTTTAGGGATAT+CGG - chr1_4:6590877-6590896 Msa0146850:intron 40.0%
! TTATGAGAAGCCGATTCAGT+TGG - chr1_4:6590991-6591010 Msa0146850:intron 40.0%
TCCTTCAACACCAACTGAAT+CGG + chr1_4:6591004-6591023 None:intergenic 40.0%
!! TTCAGTTGGTGTTGAAGGAT+AGG - chr1_4:6591005-6591024 Msa0146850:intron 40.0%
!! TCAGTTGGTGTTGAAGGATA+GGG - chr1_4:6591006-6591025 Msa0146850:intron 40.0%
TTTAGAGGAGAGAGTTTCGA+TGG - chr1_4:6591043-6591062 Msa0146850:intron 40.0%
TTAGAGGAGAGAGTTTCGAT+GGG - chr1_4:6591044-6591063 Msa0146850:intron 40.0%
! AGAGAATGATGGAGCTGAAA+TGG - chr1_4:6591072-6591091 Msa0146850:intron 40.0%
GAGAGTCGTGTAAATGTGAA+AGG - chr1_4:6591211-6591230 Msa0146850:intron 40.0%
TGTGAAAGGAATAGGTGCTA+AGG - chr1_4:6591225-6591244 Msa0146850:intron 40.0%
GTGAAAGGAATAGGTGCTAA+GGG - chr1_4:6591226-6591245 Msa0146850:intron 40.0%
CATAAGCTTCCTCCTTTACA+AGG - chr1_4:6591382-6591401 Msa0146850:intron 40.0%
CTACCATCCATTGAATTGCT+AGG + chr1_4:6591427-6591446 None:intergenic 40.0%
ATCAGCATGGAGTTTGGAAA+TGG - chr1_4:6591460-6591479 Msa0146850:intron 40.0%
AAATGGTGAATTCAGCTCAC+AGG - chr1_4:6591477-6591496 Msa0146850:intron 40.0%
CATTTCTGAATTGGAGCAGA+AGG - chr1_4:6591733-6591752 Msa0146850:CDS 40.0%
GATGATACGCACCTGTAATT+TGG + chr1_4:6591804-6591823 None:intergenic 40.0%
TTATTGCACTTGGCTACAGA+TGG - chr1_4:6591921-6591940 Msa0146850:CDS 40.0%
CAAATTGAGGCTTCAATCCT+TGG - chr1_4:6591978-6591997 Msa0146850:CDS 40.0%
CATGCATACCATCTTTCAGT+TGG + chr1_4:6592014-6592033 None:intergenic 40.0%
! TCCTGCCTACATAGTACTTT+TGG - chr1_4:6592324-6592343 Msa0146850:CDS 40.0%
!! ACCAAAAGTACTATGTAGGC+AGG + chr1_4:6592328-6592347 None:intergenic 40.0%
CCGTATTGTACTGAATCTCT+TGG - chr1_4:6592364-6592383 Msa0146850:CDS 40.0%
CAAGCCTTAGTCTACCTTAT+GGG - chr1_4:6592477-6592496 Msa0146850:CDS 40.0%
TGATCCCATAAGGTAGACTA+AGG + chr1_4:6592484-6592503 None:intergenic 40.0%
TTCAGTGTTGTCAATCACAG+CGG - chr1_4:6592576-6592595 Msa0146850:CDS 40.0%
TACTATAGCCGCTATTTGAC+AGG - chr1_4:6592646-6592665 Msa0146850:CDS 40.0%
ACTATAGCCGCTATTTGACA+GGG - chr1_4:6592647-6592666 Msa0146850:CDS 40.0%
ATATTGCCCCTGTCAAATAG+CGG + chr1_4:6592657-6592676 None:intergenic 40.0%
! GCTCTGAATGAGACTTTGAA+TGG - chr1_4:6593009-6593028 Msa0146850:CDS 40.0%
! TTCCAATCGAAGCATCAGAA+TGG - chr1_4:6593243-6593262 Msa0146850:CDS 40.0%
ATTCTTTGAATTGGAGCTGG+TGG - chr1_4:6593353-6593372 Msa0146850:five_prime_UTR 40.0%
AACGGTGGTGAAGAAGAGAA+TGG + chr1_4:6590064-6590083 None:intergenic 45.0%
ATTCTCTTCTTCACCACCGT+TGG - chr1_4:6590063-6590082 Msa0146850:three_prime_UTR 45.0%
TTAGGGTTAGGGTATGAAGG+TGG + chr1_4:6590548-6590567 None:intergenic 45.0%
! GGAGGCATAAATTGGGGATA+AGG + chr1_4:6590599-6590618 None:intergenic 45.0%
AGTAGGTTGTGACAAAGACC+TGG + chr1_4:6590639-6590658 None:intergenic 45.0%
TCGAACCCAATTCCGAAAAG+GGG + chr1_4:6590733-6590752 None:intergenic 45.0%
! TGTTTCTATGGAGGATGGCT+TGG - chr1_4:6590757-6590776 Msa0146850:intron 45.0%
GTTTCTATGGAGGATGGCTT+GGG - chr1_4:6590758-6590777 Msa0146850:intron 45.0%
ATTGTCTTCCGCCTCGTAAA+GGG - chr1_4:6590837-6590856 Msa0146850:intron 45.0%
TCTAGCAGTGATTCGCCTTT+AGG - chr1_4:6590869-6590888 Msa0146850:intron 45.0%
CTAGCAGTGATTCGCCTTTA+GGG - chr1_4:6590870-6590889 Msa0146850:intron 45.0%
TGTCAGTGATCGTCGGAATT+TGG - chr1_4:6590946-6590965 Msa0146850:intron 45.0%
! GATCGTCGGAATTTGGTTTC+TGG - chr1_4:6590953-6590972 Msa0146850:intron 45.0%
! TGAATCGGCTTCTCATAACC+AGG + chr1_4:6590989-6591008 None:intergenic 45.0%
AAGGATAGGGACTGTGTTGA+TGG - chr1_4:6591019-6591038 Msa0146850:intron 45.0%
! AGGATAGGGACTGTGTTGAT+GGG - chr1_4:6591020-6591039 Msa0146850:intron 45.0%
!! GACTGTGTTGATGGGTTTAG+AGG - chr1_4:6591028-6591047 Msa0146850:intron 45.0%
GATGGGAGGAAAGAGAATGA+TGG - chr1_4:6591061-6591080 Msa0146850:intron 45.0%
ATGGAAGATAGCAGAACCAG+TGG - chr1_4:6591154-6591173 Msa0146850:intron 45.0%
GTTCAAGCTGTTCAGATGAG+AGG - chr1_4:6591254-6591273 Msa0146850:intron 45.0%
AAGCTGTTCAGATGAGAGGA+GGG - chr1_4:6591258-6591277 Msa0146850:intron 45.0%
AATGGAGATATTGCCCCTAG+TGG - chr1_4:6591301-6591320 Msa0146850:intron 45.0%
TTCTCCTATGTCGACCACTA+GGG + chr1_4:6591318-6591337 None:intergenic 45.0%
ACACTCGCCTAGCAATTCAA+TGG - chr1_4:6591417-6591436 Msa0146850:intron 45.0%
TCGCCTAGCAATTCAATGGA+TGG - chr1_4:6591421-6591440 Msa0146850:intron 45.0%
!! CCAAACTCCATGCTGATTTC+TGG + chr1_4:6591457-6591476 None:intergenic 45.0%
CCAGAAATCAGCATGGAGTT+TGG - chr1_4:6591454-6591473 Msa0146850:intron 45.0%
TCTTACCTCTTTGCACGCTT+GGG + chr1_4:6591556-6591575 None:intergenic 45.0%
TTCTTACCTCTTTGCACGCT+TGG + chr1_4:6591557-6591576 None:intergenic 45.0%
CAACAGTCCCAACTGAAAGA+TGG - chr1_4:6592003-6592022 Msa0146850:intron 45.0%
CCATAAGGTAGACTAAGGCT+TGG + chr1_4:6592479-6592498 None:intergenic 45.0%
CCAAGCCTTAGTCTACCTTA+TGG - chr1_4:6592476-6592495 Msa0146850:CDS 45.0%
GCTGTGATTGACAACACTGA+AGG + chr1_4:6592577-6592596 None:intergenic 45.0%
TCAATCACAGCGGAAAGTAG+TGG - chr1_4:6592586-6592605 Msa0146850:CDS 45.0%
CAATCACAGCGGAAAGTAGT+GGG - chr1_4:6592587-6592606 Msa0146850:CDS 45.0%
CCTATAGCACTGTAGCATAG+CGG + chr1_4:6592624-6592643 None:intergenic 45.0%
CGCTATGCTACAGTGCTATA+GGG - chr1_4:6592622-6592641 Msa0146850:CDS 45.0%
CTATAGCCGCTATTTGACAG+GGG - chr1_4:6592648-6592667 Msa0146850:CDS 45.0%
AGACTTTGAATGGCGAAGTC+CGG - chr1_4:6593019-6593038 Msa0146850:CDS 45.0%
AGACACACTGTAGCAGAACT+AGG - chr1_4:6593048-6593067 Msa0146850:CDS 45.0%
TGCCATTCTGATGCTTCGAT+TGG + chr1_4:6593248-6593267 None:intergenic 45.0%
AAATCCTTCCCAGTGCACAT+GGG + chr1_4:6593498-6593517 None:intergenic 45.0%
AAAATCCTTCCCAGTGCACA+TGG + chr1_4:6593499-6593518 None:intergenic 45.0%
ACTTCAGTATGACAACACCG+AGG + chr1_4:6593568-6593587 None:intergenic 45.0%
CCTTCATAAATGGTCCACCA+TGG + chr1_4:6593613-6593632 None:intergenic 45.0%
!! CCATGGTGGACCATTTATGA+AGG - chr1_4:6593610-6593629 Msa0146850:five_prime_UTR 45.0%
ACATGATAAGGGGAAGGGGA+GGG + chr1_4:6590701-6590720 None:intergenic 50.0%
TACATGATAAGGGGAAGGGG+AGG + chr1_4:6590702-6590721 None:intergenic 50.0%
!! ATGGAGGATGGCTTGGGTTT+TGG - chr1_4:6590764-6590783 Msa0146850:intron 50.0%
! GTTAGGCGAAGGTGCATGAT+GGG + chr1_4:6590792-6590811 None:intergenic 50.0%
ATCATGCACCTTCGCCTAAC+CGG - chr1_4:6590792-6590811 Msa0146850:intron 50.0%
CATTGTCTTCCGCCTCGTAA+AGG - chr1_4:6590836-6590855 Msa0146850:intron 50.0%
TGTTAACTCTGTGCCTCAGC+TGG - chr1_4:6590904-6590923 Msa0146850:intron 50.0%
TGGTGAGTGTCAGTGATCGT+CGG - chr1_4:6590939-6590958 Msa0146850:intron 50.0%
! CGTCGGAATTTGGTTTCTGG+AGG - chr1_4:6590956-6590975 Msa0146850:intron 50.0%
! GTTTCTGGAGGAGAGAAACC+TGG - chr1_4:6590968-6590987 Msa0146850:intron 50.0%
!! GCCGATTCAGTTGGTGTTGA+AGG - chr1_4:6591000-6591019 Msa0146850:intron 50.0%
CAGAACCAGTGGTTCGAAGA+CGG - chr1_4:6591165-6591184 Msa0146850:intron 50.0%
TTCAACCGTCTTCGAACCAC+TGG + chr1_4:6591173-6591192 None:intergenic 50.0%
CAAGCTGTTCAGATGAGAGG+AGG - chr1_4:6591257-6591276 Msa0146850:intron 50.0%
TGTTCAGATGAGAGGAGGGA+AGG - chr1_4:6591262-6591281 Msa0146850:intron 50.0%
GTTCAGATGAGAGGAGGGAA+GGG - chr1_4:6591263-6591282 Msa0146850:intron 50.0%
TTCAGATGAGAGGAGGGAAG+GGG - chr1_4:6591264-6591283 Msa0146850:intron 50.0%
! GGGGTCAAGAGGAGTTCTAA+TGG - chr1_4:6591283-6591302 Msa0146850:intron 50.0%
TCTCCTATGTCGACCACTAG+GGG + chr1_4:6591317-6591336 None:intergenic 50.0%
CTTCTCCTATGTCGACCACT+AGG + chr1_4:6591319-6591338 None:intergenic 50.0%
TGACCAGGTCGACCTTGTAA+AGG + chr1_4:6591397-6591416 None:intergenic 50.0%
TCAATCAGCTGCTCGCTCAA+AGG - chr1_4:6591694-6591713 Msa0146850:CDS 50.0%
CAGTTGGGACTGTTGTTCCA+AGG + chr1_4:6591998-6592017 None:intergenic 50.0%
! GCACTGTAGCATAGCGGAAT+TGG + chr1_4:6592618-6592637 None:intergenic 50.0%
CCGCTATGCTACAGTGCTAT+AGG - chr1_4:6592621-6592640 Msa0146850:CDS 50.0%
! TTCTGAAGAAGGGATGGTGG+TGG + chr1_4:6592898-6592917 None:intergenic 50.0%
! TGCTTCTGAAGAAGGGATGG+TGG + chr1_4:6592901-6592920 None:intergenic 50.0%
! CAGTGCTTCTGAAGAAGGGA+TGG + chr1_4:6592904-6592923 None:intergenic 50.0%
CTACAGTGTGTCTTAAGCGC+CGG + chr1_4:6593041-6593060 None:intergenic 50.0%
CACACTGTAGCAGAACTAGG+CGG - chr1_4:6593051-6593070 Msa0146850:CDS 50.0%
TCGAGCCATAAGACCTGAGA+GGG + chr1_4:6593085-6593104 None:intergenic 50.0%
GCGGCTGGAAATTTCTAAGC+TGG + chr1_4:6593158-6593177 None:intergenic 50.0%
!! TCCTGAGAGACGCTGTTTTG+CGG + chr1_4:6593177-6593196 None:intergenic 50.0%
TTCGTTCTCCCATGTGCACT+GGG - chr1_4:6593487-6593506 Msa0146850:intron 50.0%
! GGTTAGGCGAAGGTGCATGA+TGG + chr1_4:6590793-6590812 None:intergenic 55.0%
TCATGCACCTTCGCCTAACC+GGG - chr1_4:6590793-6590812 Msa0146850:intron 55.0%
TGAACAGCATGACCCCGGTT+AGG + chr1_4:6590809-6590828 None:intergenic 55.0%
CATGCTGAACAGCATGACCC+CGG + chr1_4:6590814-6590833 None:intergenic 55.0%
! TTCCGCCTCGTAAAGGGCAT+AGG - chr1_4:6590843-6590862 Msa0146850:intron 55.0%
TCACTGACACTCACCAGCTG+AGG + chr1_4:6590935-6590954 None:intergenic 55.0%
GAGGAGAGAGTTTCGATGGG+AGG - chr1_4:6591047-6591066 Msa0146850:intron 55.0%
TTGCCCCTAGTGGTCGACAT+AGG - chr1_4:6591311-6591330 Msa0146850:intron 55.0%
CCAGGTCGACCTTGTAAAGG+AGG + chr1_4:6591394-6591413 None:intergenic 55.0%
CCTCCTTTACAAGGTCGACC+TGG - chr1_4:6591391-6591410 Msa0146850:intron 55.0%
!! TTGCTAGGCGAGTGTTGACC+AGG + chr1_4:6591412-6591431 None:intergenic 55.0%
CTGATCCCAAGCGTGCAAAG+AGG - chr1_4:6591548-6591567 Msa0146850:intron 55.0%
GTCTGCCCTCTCAGGTCTTA+TGG - chr1_4:6593077-6593096 Msa0146850:CDS 55.0%
GTCGAGCCATAAGACCTGAG+AGG + chr1_4:6593086-6593105 None:intergenic 55.0%
GCTGCGCCTGGAACATTTGT+TGG + chr1_4:6593122-6593141 None:intergenic 55.0%
CTTCGTTCTCCCATGTGCAC+TGG - chr1_4:6593486-6593505 Msa0146850:intron 55.0%
TTCTCCCATGTGCACTGGGA+AGG - chr1_4:6593491-6593510 Msa0146850:intron 55.0%
GAAGGGGAGGGACTCAATGG+TGG + chr1_4:6590689-6590708 None:intergenic 60.0%
CATGCACCTTCGCCTAACCG+GGG - chr1_4:6590794-6590813 Msa0146850:intron 60.0%
CGGGGTCATGCTGTTCAGCA+TGG - chr1_4:6590812-6590831 Msa0146850:intron 60.0%
CGCCTATGCCCTTTACGAGG+CGG + chr1_4:6590848-6590867 None:intergenic 60.0%
! CGCCTCGTAAAGGGCATAGG+CGG - chr1_4:6590846-6590865 Msa0146850:intron 60.0%
GACCGCCTATGCCCTTTACG+AGG + chr1_4:6590851-6590870 None:intergenic 60.0%
AGAGGAGGGAAGGGGTCAAG+AGG - chr1_4:6591272-6591291 Msa0146850:intron 60.0%
CAGCTGCTCGCTCAAAGGAG+CGG - chr1_4:6591699-6591718 Msa0146850:CDS 60.0%
!! GAGAGACGCTGTTTTGCGGC+TGG + chr1_4:6593173-6593192 None:intergenic 60.0%
GCCGCAAAACAGCGTCTCTC+AGG - chr1_4:6593173-6593192 Msa0146850:CDS 60.0%
GGGGAAGGGGAGGGACTCAA+TGG + chr1_4:6590692-6590711 None:intergenic 65.0%
GCATGACCCCGGTTAGGCGA+AGG + chr1_4:6590803-6590822 None:intergenic 65.0%
! AGCTGAGGCGTCACCAGCTG+AGG + chr1_4:6590920-6590939 None:intergenic 65.0%
! TCAGCTGGTGACGCCTCAGC+TGG - chr1_4:6590919-6590938 Msa0146850:intron 65.0%
TTGGCTGCTGATGCTGCGCC+TGG + chr1_4:6593134-6593153 None:intergenic 65.0%
GGCGGAGAGTCTGCCCTCTC+AGG - chr1_4:6593069-6593088 Msa0146850:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6590043 6593651 6590043 ID=Msa0146850;Name=Msa0146850
chr1_4 mRNA 6590043 6593651 6590043 ID=Msa0146850-mRNA-1;Parent=Msa0146850;Name=Msa0146850-mRNA-1;_AED=0.03;_eAED=0.03;_QI=196|1|1|1|0.75|0.6|5|370|553
chr1_4 exon 6590043 6590684 6590043 ID=Msa0146850-mRNA-1:exon:2899;Parent=Msa0146850-mRNA-1
chr1_4 exon 6591670 6591754 6591670 ID=Msa0146850-mRNA-1:exon:2898;Parent=Msa0146850-mRNA-1
chr1_4 exon 6591883 6592015 6591883 ID=Msa0146850-mRNA-1:exon:2897;Parent=Msa0146850-mRNA-1
chr1_4 exon 6592125 6593435 6592125 ID=Msa0146850-mRNA-1:exon:2896;Parent=Msa0146850-mRNA-1
chr1_4 exon 6593595 6593651 6593595 ID=Msa0146850-mRNA-1:exon:2895;Parent=Msa0146850-mRNA-1
chr1_4 five_prime_UTR 6593595 6593651 6593595 ID=Msa0146850-mRNA-1:five_prime_utr;Parent=Msa0146850-mRNA-1
chr1_4 five_prime_UTR 6593297 6593435 6593297 ID=Msa0146850-mRNA-1:five_prime_utr;Parent=Msa0146850-mRNA-1
chr1_4 CDS 6592125 6593296 6592125 ID=Msa0146850-mRNA-1:cds;Parent=Msa0146850-mRNA-1
chr1_4 CDS 6591883 6592015 6591883 ID=Msa0146850-mRNA-1:cds;Parent=Msa0146850-mRNA-1
chr1_4 CDS 6591670 6591754 6591670 ID=Msa0146850-mRNA-1:cds;Parent=Msa0146850-mRNA-1
chr1_4 CDS 6590413 6590684 6590413 ID=Msa0146850-mRNA-1:cds;Parent=Msa0146850-mRNA-1
chr1_4 three_prime_UTR 6590043 6590412 6590043 ID=Msa0146850-mRNA-1:three_prime_utr;Parent=Msa0146850-mRNA-1
Gene Sequence

>Msa0146850

ATGCATGAACGAATGGAGCGTTTTGATCAGAAAAAAGTTCATGCATTTGGTTCTCCAAAACCCCCAATTCAATTGAATCCTATGCCTATTAATCAAATTAATCAAATGGGTTTTCCTGAAAATCACAAAAGTTCTGGTTTTGGTATTCCACCTTCATACCCTAACCCTAATACCAGTTTATCACCTAAACCATCATCTCCTTATCCCCAATTTATGCCTCCACAATCTCAAACTCATTCCAGGTCTTTGTCACAACCTACTTTTTTATCTATTGATTCATTTTCTTTGCCACCATTGAGTCCCTCCCCTTCCCCTTATCATGTAAGTTCAAACCCCTTTTCGGAATTGGGTTCGAAAGATGTTTCTATGGAGGATGGCTTGGGTTTTGGTGCCCATCATGCACCTTCGCCTAACCGGGGTCATGCTGTTCAGCATGGTCATTGTCTTCCGCCTCGTAAAGGGCATAGGCGGTCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTTGTTAACTCTGTGCCTCAGCTGGTGACGCCTCAGCTGGTGAGTGTCAGTGATCGTCGGAATTTGGTTTCTGGAGGAGAGAAACCTGGTTATGAGAAGCCGATTCAGTTGGTGTTGAAGGATAGGGACTGTGTTGATGGGTTTAGAGGAGAGAGTTTCGATGGGAGGAAAGAGAATGATGGAGCTGAAATGGATGATTTGTTTAGTGCTTACATGAATTTGGAGAATATGCACAATATGAGTTTTTCGGGTATGGAAGATAGCAGAACCAGTGGTTCGAAGACGGTTGAAAGCAGCGATAATGAAGCTGAGAGTCGTGTAAATGTGAAAGGAATAGGTGCTAAGGGTGCGAGTTCAAGCTGTTCAGATGAGAGGAGGGAAGGGGTCAAGAGGAGTTCTAATGGAGATATTGCCCCTAGTGGTCGACATAGGAGAAGTTACTCATTGGATAGTTCCATTGAAAATTTTAATATTGAAGATCATAAGCTTCCTCCTTTACAAGGTCGACCTGGTCAACACTCGCCTAGCAATTCAATGGATGGTAGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATGAAGAAAATAATGGAAAATGATAAACTTGCTGAAATTGCTGCGGCTGATCCCAAGCGTGCAAAGAGGATTTTGGCTAATCGTCAATCAGCTGCTCGCTCAAAGGAGCGGAAGATGAAATACATTTCTGAATTGGAGCAGAAGGTCCAAACTCTTCAGACAGAAACTACTACTTTGTCTACTCAGTTTACCAAATTACAGATGGATCATCAAGAGCTTAAAAGTGAGAATAAAGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAGTCCCAACTGAAAGATGCTCTGAATGAGACTTTGAATGGCGAAGTCCGGCGCTTAAGACACACTGTAGCAGAACTAGGCGGAGAGTCTGCCCTCTCAGGTCTTATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGGCGCAGCATCAGCAGCCAAACCAGCTTAGAAATTTCCAGCCGCAAAACAGCGTCTCTCAGGAAGAAACACAGACTCAGTCGCAGCAGCATATTCAACGCAATCATGAATTCCAATCGAAGCATCAGAATGGCAAAACCACTGCATAA
Protein sequence

>Msa0146850

MHERMERFDQKKVHAFGSPKPPIQLNPMPINQINQMGFPENHKSSGFGIPPSYPNPNTSLSPKPSSPYPQFMPPQSQTHSRSLSQPTFLSIDSFSLPPLSPSPSPYHVSSNPFSELGSKDVSMEDGLGFGAHHAPSPNRGHAVQHGHCLPPRKGHRRSSSDSPLGISEFVNSVPQLVTPQLVSVSDRRNLVSGGEKPGYEKPIQLVLKDRDCVDGFRGESFDGRKENDGAEMDDLFSAYMNLENMHNMSFSGMEDSRTSGSKTVESSDNEAESRVNVKGIGAKGASSSCSDERREGVKRSSNGDIAPSGRHRRSYSLDSSIENFNIEDHKLPPLQGRPGQHSPSNSMDGSKTPEISMEFGNGEFSSQEMKKIMENDKLAEIAAADPKRAKRILANRQSAARSKERKMKYISELEQKVQTLQTETTTLSTQFTKLQMDHQELKSENKEYKLRLQSLEQQSQLKDALNETLNGEVRRLRHTVAELGGESALSGLMARQLAINQQMFQAQHQQPNQLRNFQPQNSVSQEETQTQSQQHIQRNHEFQSKHQNGKTTA*